@jbrowse/core 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (204) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +20 -4
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -558
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -473
  4. package/BaseFeatureWidget/index.d.ts +2 -2
  5. package/BaseFeatureWidget/index.js +88 -124
  6. package/BaseFeatureWidget/types.d.ts +1 -0
  7. package/BaseFeatureWidget/types.js +1 -4
  8. package/BaseFeatureWidget/util.js +40 -75
  9. package/CorePlugin.js +55 -94
  10. package/Plugin.js +9 -34
  11. package/PluginLoader.js +153 -422
  12. package/PluginManager.d.ts +84 -117
  13. package/PluginManager.js +377 -666
  14. package/ReExports/Attributes.d.ts +2 -0
  15. package/ReExports/Attributes.js +5 -0
  16. package/ReExports/BaseCard.d.ts +2 -0
  17. package/ReExports/BaseCard.js +5 -0
  18. package/ReExports/DataGrid.d.ts +2 -0
  19. package/ReExports/DataGrid.js +6 -0
  20. package/ReExports/FeatureDetails.d.ts +2 -0
  21. package/ReExports/FeatureDetails.js +5 -0
  22. package/ReExports/index.js +6 -12
  23. package/ReExports/list.d.ts +5 -0
  24. package/ReExports/list.js +271 -7
  25. package/ReExports/material-ui-colors.d.ts +1 -19
  26. package/ReExports/material-ui-colors.js +16 -158
  27. package/ReExports/modules.d.ts +68 -109
  28. package/ReExports/modules.js +455 -244
  29. package/TextSearch/BaseResults.js +51 -123
  30. package/TextSearch/TextSearchManager.d.ts +3 -1
  31. package/TextSearch/TextSearchManager.js +66 -144
  32. package/assemblyManager/assembly.js +280 -554
  33. package/assemblyManager/assemblyConfigSchema.js +47 -64
  34. package/assemblyManager/assemblyManager.d.ts +12 -10
  35. package/assemblyManager/assemblyManager.js +126 -270
  36. package/assemblyManager/index.js +9 -22
  37. package/configuration/configurationSchema.js +167 -203
  38. package/configuration/configurationSlot.js +248 -326
  39. package/configuration/index.js +19 -35
  40. package/configuration/util.d.ts +1 -1
  41. package/configuration/util.js +131 -173
  42. package/data_adapters/BaseAdapter.d.ts +2 -2
  43. package/data_adapters/BaseAdapter.js +132 -521
  44. package/data_adapters/CytobandAdapter.js +40 -126
  45. package/data_adapters/dataAdapterCache.js +77 -158
  46. package/package.json +16 -18
  47. package/pluggableElementTypes/AdapterType.js +24 -79
  48. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  49. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  50. package/pluggableElementTypes/ConnectionType.js +22 -65
  51. package/pluggableElementTypes/DisplayType.js +35 -82
  52. package/pluggableElementTypes/InternetAccountType.js +23 -64
  53. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  54. package/pluggableElementTypes/RpcMethodType.js +85 -427
  55. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  56. package/pluggableElementTypes/TrackType.js +26 -70
  57. package/pluggableElementTypes/ViewType.js +21 -63
  58. package/pluggableElementTypes/WidgetType.js +21 -64
  59. package/pluggableElementTypes/index.d.ts +4 -3
  60. package/pluggableElementTypes/index.js +42 -125
  61. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  62. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +10 -10
  63. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  64. package/pluggableElementTypes/models/BaseTrackModel.d.ts +1 -1
  65. package/pluggableElementTypes/models/BaseTrackModel.js +139 -200
  66. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  67. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  68. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  69. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  70. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  71. package/pluggableElementTypes/models/index.js +21 -70
  72. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  73. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  74. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  75. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  76. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  77. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  78. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  79. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +2 -2
  80. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  81. package/pluggableElementTypes/renderers/index.js +19 -62
  82. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  83. package/rpc/BaseRpcDriver.js +169 -405
  84. package/rpc/MainThreadRpcDriver.js +27 -150
  85. package/rpc/RpcManager.js +58 -159
  86. package/rpc/WebWorkerRpcDriver.js +54 -171
  87. package/rpc/configSchema.js +25 -49
  88. package/rpc/coreRpcMethods.d.ts +1 -3
  89. package/rpc/coreRpcMethods.js +221 -959
  90. package/rpc/remoteAbortSignals.js +46 -70
  91. package/tsconfig.build.tsbuildinfo +1 -1
  92. package/ui/AboutDialog.js +107 -158
  93. package/ui/App.js +157 -261
  94. package/ui/AssemblySelector.d.ts +1 -1
  95. package/ui/AssemblySelector.js +59 -115
  96. package/ui/CascadingMenu.js +100 -199
  97. package/ui/ColorPicker.d.ts +16 -0
  98. package/ui/ColorPicker.js +97 -0
  99. package/ui/Drawer.js +28 -58
  100. package/ui/DrawerWidget.js +109 -209
  101. package/ui/DropDownMenu.d.ts +0 -8
  102. package/ui/DropDownMenu.js +60 -97
  103. package/ui/EditableTypography.d.ts +1 -1
  104. package/ui/EditableTypography.js +87 -155
  105. package/ui/ErrorMessage.js +41 -66
  106. package/ui/FactoryResetDialog.js +24 -57
  107. package/ui/FatalErrorDialog.js +59 -91
  108. package/ui/FileSelector/FileSelector.js +123 -189
  109. package/ui/FileSelector/LocalFileChooser.js +44 -71
  110. package/ui/FileSelector/UrlChooser.js +17 -38
  111. package/ui/FileSelector/index.js +6 -12
  112. package/ui/Icons.d.ts +1 -1
  113. package/ui/Icons.js +45 -69
  114. package/ui/Logo.js +57 -110
  115. package/ui/Menu.d.ts +1 -1
  116. package/ui/Menu.js +232 -355
  117. package/ui/PrerenderedCanvas.js +63 -78
  118. package/ui/ResizeHandle.js +87 -114
  119. package/ui/ReturnToImportFormDialog.js +32 -59
  120. package/ui/SanitizedHTML.js +63 -52
  121. package/ui/Snackbar.js +74 -99
  122. package/ui/SnackbarModel.js +37 -51
  123. package/ui/Tooltip.d.ts +3 -1
  124. package/ui/Tooltip.js +49 -74
  125. package/ui/ViewContainer.js +113 -183
  126. package/ui/colors.d.ts +10 -0
  127. package/ui/colors.js +78 -0
  128. package/ui/index.js +51 -181
  129. package/ui/react-colorful.d.ts +17 -0
  130. package/ui/react-colorful.js +455 -0
  131. package/ui/theme.d.ts +279 -131
  132. package/ui/theme.js +197 -225
  133. package/util/Base1DUtils.d.ts +32 -0
  134. package/util/Base1DUtils.js +174 -0
  135. package/util/Base1DViewModel.d.ts +16 -37
  136. package/util/Base1DViewModel.js +116 -295
  137. package/util/QuickLRU.js +84 -332
  138. package/util/TimeTraveller.d.ts +19 -0
  139. package/util/TimeTraveller.js +86 -0
  140. package/util/aborting.js +49 -127
  141. package/util/analytics.js +91 -154
  142. package/util/blockTypes.js +106 -240
  143. package/util/calculateDynamicBlocks.js +98 -128
  144. package/util/calculateStaticBlocks.js +105 -125
  145. package/util/color/cssColorsLevel4.js +156 -160
  146. package/util/color/index.js +33 -55
  147. package/util/compositeMap.js +49 -333
  148. package/util/formatFastaStrings.js +9 -14
  149. package/util/idMaker.js +18 -31
  150. package/util/index.d.ts +18 -39
  151. package/util/index.js +743 -1236
  152. package/util/io/RemoteFileWithRangeCache.js +88 -257
  153. package/util/io/index.js +95 -169
  154. package/util/jexl.js +60 -115
  155. package/util/jexlStrings.js +24 -29
  156. package/util/layouts/BaseLayout.js +1 -4
  157. package/util/layouts/GranularRectLayout.js +388 -557
  158. package/util/layouts/MultiLayout.js +41 -109
  159. package/util/layouts/PrecomputedLayout.js +56 -114
  160. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  161. package/util/layouts/SceneGraph.js +127 -197
  162. package/util/layouts/index.js +29 -66
  163. package/util/mst-reflection.js +55 -71
  164. package/util/offscreenCanvasPonyfill.js +66 -134
  165. package/util/offscreenCanvasUtils.d.ts +2 -7
  166. package/util/offscreenCanvasUtils.js +49 -146
  167. package/util/range.js +29 -40
  168. package/util/rxjs.js +20 -27
  169. package/util/simpleFeature.js +88 -152
  170. package/util/stats.js +91 -151
  171. package/util/tracks.js +130 -171
  172. package/util/types/index.d.ts +3 -3
  173. package/util/types/index.js +110 -179
  174. package/util/types/mst.d.ts +3 -3
  175. package/util/types/mst.js +91 -142
  176. package/util/types/util.js +1 -4
  177. package/util/when.js +54 -101
  178. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  179. package/BaseFeatureWidget/index.test.js +0 -51
  180. package/TextSearch/BaseResults.test.js +0 -42
  181. package/configuration/configurationSchema.test.js +0 -266
  182. package/configuration/configurationSlot.test.js +0 -69
  183. package/configuration/util.test.js +0 -39
  184. package/data_adapters/BaseAdapter.test.js +0 -200
  185. package/declare.d.js +0 -1
  186. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  187. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  188. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  189. package/rpc/BaseRpcDriver.test.js +0 -540
  190. package/rpc/declaration.d.js +0 -1
  191. package/ui/FatalErrorDialog.test.js +0 -82
  192. package/ui/SanitizedHTML.test.js +0 -36
  193. package/ui/theme.test.js +0 -111
  194. package/util/Base1DViewModel.test.js +0 -130
  195. package/util/calculateDynamicBlocks.test.js +0 -74
  196. package/util/calculateStaticBlocks.test.js +0 -297
  197. package/util/declare.d.js +0 -1
  198. package/util/formatFastaStrings.test.js +0 -40
  199. package/util/index.test.js +0 -213
  200. package/util/jexlStrings.test.js +0 -48
  201. package/util/layouts/GranularRectLayout.test.js +0 -99
  202. package/util/range.test.js +0 -64
  203. package/util/simpleFeature.test.js +0 -34
  204. package/util/stats.test.js +0 -172
@@ -1,86 +1,71 @@
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof = require("@babel/runtime/helpers/typeof");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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  });
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- exports.default = void 0;
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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-
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- var _propTypes = _interopRequireDefault(require("prop-types"));
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-
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- var _react = _interopRequireWildcard(require("react"));
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-
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- var _offscreenCanvasPonyfill = require("../util/offscreenCanvasPonyfill");
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-
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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-
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ /* eslint-disable @typescript-eslint/no-explicit-any */
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+ const prop_types_1 = __importDefault(require("prop-types"));
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+ const react_1 = __importStar(require("react"));
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+ const offscreenCanvasPonyfill_1 = require("../util/offscreenCanvasPonyfill");
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  function PrerenderedCanvas(props) {
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- var width = props.width,
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- height = props.height,
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- highResolutionScaling = props.highResolutionScaling,
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- style = props.style,
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- imageData = props.imageData,
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- blockKey = props.blockKey,
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- showSoftClip = props.showSoftClip;
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- var featureCanvas = (0, _react.useRef)(null);
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- (0, _react.useEffect)(function () {
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- if (!imageData) {
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- return;
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- }
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- if (!canvas) {
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- return;
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- }
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- return;
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- }
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-
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- (0, _offscreenCanvasPonyfill.drawImageOntoCanvasContext)(imageData, context);
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- }, [imageData]);
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- var softClipString = showSoftClip ? '_softclipped' : '';
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- var blockKeyStr = blockKey ? '_' + blockKey : '';
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- var testId = "prerendered_canvas".concat(softClipString).concat(blockKeyStr);
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- return /*#__PURE__*/_react.default.createElement("canvas", {
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- "data-testid": testId,
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- ref: featureCanvas,
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- width: width * highResolutionScaling,
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- height: height * highResolutionScaling,
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- style: _objectSpread({
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- width: width,
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- height: height
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- }, style)
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- });
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+ const { width, height, highResolutionScaling, style, imageData, blockKey, showSoftClip, } = props;
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+ const [done, setDone] = (0, react_1.useState)(false);
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+ const featureCanvas = (0, react_1.useRef)(null);
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+ (0, react_1.useEffect)(() => {
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+ if (!imageData) {
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+ return;
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+ }
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+ const canvas = featureCanvas.current;
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+ if (!canvas) {
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+ return;
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+ }
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+ const context = canvas.getContext('2d');
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+ if (!context) {
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+ return;
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+ }
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+ (0, offscreenCanvasPonyfill_1.drawImageOntoCanvasContext)(imageData, context);
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+ setDone(true);
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+ }, [imageData]);
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+ const softClipString = showSoftClip ? '_softclipped' : '';
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+ const blockKeyStr = blockKey ? '_' + blockKey : '';
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+ const testId = `prerendered_canvas${softClipString}${blockKeyStr}${done ? '_done' : ''}`;
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+ return (react_1.default.createElement("canvas", { "data-testid": testId, ref: featureCanvas, width: width * highResolutionScaling, height: height * highResolutionScaling, style: { width, height, ...style } }));
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  }
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- highResolutionScaling: _propTypes.default.number,
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- style: _propTypes.default.objectOf(_propTypes.default.any),
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- imageData: _propTypes.default.any // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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+ height: prop_types_1.default.number.isRequired,
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+ width: prop_types_1.default.number.isRequired,
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+ highResolutionScaling: prop_types_1.default.number,
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+ style: prop_types_1.default.objectOf(prop_types_1.default.any),
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+ imageData: prop_types_1.default.any,
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+ // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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- highResolutionScaling: 1,
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- style: {} // config: {},
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+ highResolutionScaling: 1,
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+ style: {},
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+ // config: {},
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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- horizontalHandle: {
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- cursor: 'row-resize',
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- width: '100%'
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- },
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- verticalHandle: {
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- cursor: 'col-resize',
37
- height: '100%'
38
- },
39
- flexbox_verticalHandle: {
40
- cursor: 'col-resize',
41
- alignSelf: 'stretch' // the height: 100% is actually unable to function inside flexbox
42
-
43
- },
44
- flexbox_horizontalHandle: {
45
- cursor: 'row-resize',
46
- alignSelf: 'stretch' // similar to above
47
-
48
- }
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ Object.defineProperty(exports, "__esModule", { value: true });
26
+ const react_1 = __importStar(require("react"));
27
+ const mui_1 = require("tss-react/mui");
28
+ const useStyles = (0, mui_1.makeStyles)()({
29
+ horizontalHandle: {
30
+ cursor: 'row-resize',
31
+ width: '100%',
32
+ },
33
+ verticalHandle: {
34
+ cursor: 'col-resize',
35
+ height: '100%',
36
+ },
37
+ flexbox_verticalHandle: {
38
+ cursor: 'col-resize',
39
+ alignSelf: 'stretch', // the height: 100% is actually unable to function inside flexbox
40
+ },
41
+ flexbox_horizontalHandle: {
42
+ cursor: 'row-resize',
43
+ alignSelf: 'stretch', // similar to above
44
+ },
49
45
  });
50
-
51
- function ResizeHandle(_ref) {
52
- var onDrag = _ref.onDrag,
53
- _ref$vertical = _ref.vertical,
54
- vertical = _ref$vertical === void 0 ? false : _ref$vertical,
55
- _ref$flexbox = _ref.flexbox,
56
- flexbox = _ref$flexbox === void 0 ? false : _ref$flexbox,
57
- originalClassName = _ref.className,
58
- props = (0, _objectWithoutProperties2.default)(_ref, _excluded);
59
-
60
- var _useState = (0, _react.useState)(false),
61
- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
62
- mouseDragging = _useState2[0],
63
- setMouseDragging = _useState2[1];
64
-
65
- var prevPos = (0, _react.useRef)(0);
66
- var classes = useStyles();
67
- (0, _react.useEffect)(function () {
68
- function mouseMove(event) {
69
- event.preventDefault();
70
- var pos = vertical ? event.clientX : event.clientY;
71
- var distance = pos - prevPos.current;
72
-
73
- if (distance) {
74
- onDrag(distance);
75
- prevPos.current = pos;
76
- }
77
- }
78
-
79
- function mouseUp() {
80
- setMouseDragging(false);
46
+ function ResizeHandle({ onDrag, vertical = false, flexbox = false, className: originalClassName, ...props }) {
47
+ const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
48
+ const prevPos = (0, react_1.useRef)(0);
49
+ const { classes, cx } = useStyles();
50
+ (0, react_1.useEffect)(() => {
51
+ function mouseMove(event) {
52
+ event.preventDefault();
53
+ const pos = vertical ? event.clientX : event.clientY;
54
+ const distance = pos - prevPos.current;
55
+ if (distance) {
56
+ onDrag(distance);
57
+ prevPos.current = pos;
58
+ }
59
+ }
60
+ function mouseUp() {
61
+ setMouseDragging(false);
62
+ }
63
+ if (mouseDragging) {
64
+ window.addEventListener('mousemove', mouseMove, true);
65
+ window.addEventListener('mouseup', mouseUp, true);
66
+ return () => {
67
+ window.removeEventListener('mousemove', mouseMove, true);
68
+ window.removeEventListener('mouseup', mouseUp, true);
69
+ };
70
+ }
71
+ return () => { };
72
+ }, [mouseDragging, onDrag, vertical]);
73
+ let className;
74
+ if (flexbox) {
75
+ if (vertical) {
76
+ className = classes.flexbox_verticalHandle;
77
+ }
78
+ else {
79
+ className = classes.flexbox_horizontalHandle;
80
+ }
81
81
  }
82
-
83
- if (mouseDragging) {
84
- window.addEventListener('mousemove', mouseMove, true);
85
- window.addEventListener('mouseup', mouseUp, true);
86
- return function () {
87
- window.removeEventListener('mousemove', mouseMove, true);
88
- window.removeEventListener('mouseup', mouseUp, true);
89
- };
82
+ else if (vertical) {
83
+ className = classes.verticalHandle;
90
84
  }
91
-
92
- return function () {};
93
- }, [mouseDragging, onDrag, vertical]);
94
- var className;
95
-
96
- if (flexbox) {
97
- if (vertical) {
98
- className = classes.flexbox_verticalHandle;
99
- } else {
100
- className = classes.flexbox_horizontalHandle;
85
+ else {
86
+ className = classes.horizontalHandle;
101
87
  }
102
- } else if (vertical) {
103
- className = classes.verticalHandle;
104
- } else {
105
- className = classes.horizontalHandle;
106
- }
107
-
108
- return /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
109
- "data-resizer": "true",
110
- onMouseDown: function onMouseDown(event) {
111
- event.preventDefault();
112
- prevPos.current = vertical ? event.clientX : event.clientY;
113
- setMouseDragging(true);
114
- },
115
- role: "presentation",
116
- className: (0, _clsx.default)(className, originalClassName)
117
- }, props));
88
+ return (react_1.default.createElement("div", { "data-resizer": "true", onMouseDown: event => {
89
+ event.preventDefault();
90
+ prevPos.current = vertical ? event.clientX : event.clientY;
91
+ setMouseDragging(true);
92
+ }, role: "presentation", className: cx(className, originalClassName), ...props }));
118
93
  }
119
-
120
- var _default = ResizeHandle;
121
- exports.default = _default;
94
+ exports.default = ResizeHandle;
@@ -1,63 +1,36 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = void 0;
9
-
10
- var _react = _interopRequireDefault(require("react"));
11
-
12
- var _mobxReact = require("mobx-react");
13
-
14
- var _styles = require("@material-ui/core/styles");
15
-
16
- var _core = require("@material-ui/core");
17
-
18
- var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
19
-
20
- var useStyles = (0, _styles.makeStyles)(function (theme) {
21
- return {
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const mobx_react_1 = require("mobx-react");
8
+ const material_1 = require("@mui/material");
9
+ const mui_1 = require("tss-react/mui");
10
+ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
11
+ const useStyles = (0, mui_1.makeStyles)()(theme => ({
22
12
  closeButton: {
23
- position: 'absolute',
24
- right: theme.spacing(1),
25
- top: theme.spacing(1),
26
- color: theme.palette.grey[500]
27
- }
28
- };
29
- });
30
-
31
- function ReturnToImportFormDialog(_ref) {
32
- var model = _ref.model,
33
- handleClose = _ref.handleClose;
34
- var classes = useStyles();
35
- return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
36
- maxWidth: "xl",
37
- open: true,
38
- onClose: handleClose
39
- }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
40
- className: classes.closeButton,
41
- onClick: function onClick() {
42
- return handleClose();
43
- }
44
- }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
45
- onClick: function onClick() {
46
- model.clearView();
47
- handleClose();
13
+ position: 'absolute',
14
+ right: theme.spacing(1),
15
+ top: theme.spacing(1),
16
+ color: theme.palette.grey[500],
48
17
  },
49
- variant: "contained",
50
- color: "primary",
51
- autoFocus: true
52
- }, "OK"), /*#__PURE__*/_react.default.createElement(_core.Button, {
53
- onClick: function onClick() {
54
- return handleClose();
55
- },
56
- color: "secondary",
57
- variant: "contained"
58
- }, "Cancel")));
18
+ }));
19
+ function ReturnToImportFormDialog({ model, handleClose, }) {
20
+ const { classes } = useStyles();
21
+ return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
22
+ react_1.default.createElement(material_1.DialogTitle, null,
23
+ "Reference sequence",
24
+ handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
25
+ react_1.default.createElement(Close_1.default, null))) : null),
26
+ react_1.default.createElement(material_1.Divider, null),
27
+ react_1.default.createElement(material_1.DialogContent, null,
28
+ react_1.default.createElement(material_1.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")),
29
+ react_1.default.createElement(material_1.DialogActions, null,
30
+ react_1.default.createElement(material_1.Button, { onClick: () => {
31
+ model.clearView();
32
+ handleClose();
33
+ }, variant: "contained", color: "primary", autoFocus: true }, "OK"),
34
+ react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "secondary", variant: "contained" }, "Cancel"))));
59
35
  }
60
-
61
- var _default = (0, _mobxReact.observer)(ReturnToImportFormDialog);
62
-
63
- exports.default = _default;
36
+ exports.default = (0, mobx_react_1.observer)(ReturnToImportFormDialog);
@@ -1,63 +1,74 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _typeof = require("@babel/runtime/helpers/typeof");
6
-
7
- Object.defineProperty(exports, "__esModule", {
8
- value: true
9
- });
10
- exports.default = SanitizedHTML;
11
- exports.isHTML = isHTML;
12
-
13
- var _react = _interopRequireWildcard(require("react"));
14
-
15
- var _escapeHtml = _interopRequireDefault(require("escape-html"));
16
-
17
- var _dompurify = _interopRequireDefault(require("dompurify"));
18
-
19
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
20
-
21
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
22
-
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.isHTML = void 0;
7
+ const react_1 = __importDefault(require("react"));
8
+ const escape_html_1 = __importDefault(require("escape-html"));
9
+ const dompurify_1 = __importDefault(require("dompurify"));
23
10
  // source https://github.com/sindresorhus/html-tags/blob/master/html-tags.json
24
11
  // with some random uncommon ones removed. note: we just use this to run the content
25
12
  // through dompurify without escaping if we see an htmlTag from this list
26
13
  // otherwise we escape angle brackets and things prematurely because it might be
27
14
  // something like <TRA> in VCF. Ref #657
28
- var htmlTags = ['a', 'b', 'br', 'code', 'div', 'em', 'h1', 'h2', 'h3', 'h4', 'h5', 'h6', 'i', 'img', 'li', 'p', 'pre', 'span', 'small', 'strong', 'table', 'tbody', 'td', 'tfoot', 'th', 'thead', 'tr', 'u', 'ul'];
29
- var added = false; // adapted from is-html
15
+ const htmlTags = [
16
+ 'a',
17
+ 'b',
18
+ 'br',
19
+ 'code',
20
+ 'div',
21
+ 'em',
22
+ 'h1',
23
+ 'h2',
24
+ 'h3',
25
+ 'h4',
26
+ 'h5',
27
+ 'h6',
28
+ 'i',
29
+ 'img',
30
+ 'li',
31
+ 'p',
32
+ 'pre',
33
+ 'span',
34
+ 'small',
35
+ 'strong',
36
+ 'table',
37
+ 'tbody',
38
+ 'td',
39
+ 'tfoot',
40
+ 'th',
41
+ 'thead',
42
+ 'tr',
43
+ 'u',
44
+ 'ul',
45
+ ];
46
+ let added = false;
47
+ // adapted from is-html
30
48
  // https://github.com/sindresorhus/is-html/blob/master/index.js
31
-
32
- var full = new RegExp(htmlTags.map(function (tag) {
33
- return "<".concat(tag, "\\b[^>]*>");
34
- }).join('|'), 'i');
35
-
49
+ const full = new RegExp(htmlTags.map(tag => `<${tag}\\b[^>]*>`).join('|'), 'i');
36
50
  function isHTML(str) {
37
- return full.test(str);
51
+ return full.test(str);
38
52
  }
39
-
40
- function SanitizedHTML(_ref) {
41
- var html = _ref.html;
42
- var value = isHTML(html) ? html : (0, _escapeHtml.default)(html);
43
- (0, _react.useEffect)(function () {
53
+ exports.isHTML = isHTML;
54
+ function SanitizedHTML({ html }) {
55
+ const value = isHTML(html) ? html : (0, escape_html_1.default)(html);
44
56
  if (!added) {
45
- added = true; // see https://github.com/cure53/DOMPurify/issues/317
46
- // only have to add this once, and can't do it globally because dompurify
47
- // not yet initialized at global scope
48
-
49
- _dompurify.default.addHook('afterSanitizeAttributes', function (node) {
50
- if (node.tagName === 'A') {
51
- node.setAttribute('rel', 'noopener noreferrer');
52
- node.setAttribute('target', '_blank');
53
- }
54
- });
57
+ added = true;
58
+ // see https://github.com/cure53/DOMPurify/issues/317
59
+ // only have to add this once, and can't do it globally because dompurify
60
+ // not yet initialized at global scope
61
+ dompurify_1.default.addHook('afterSanitizeAttributes', node => {
62
+ if (node.tagName === 'A') {
63
+ node.setAttribute('rel', 'noopener noreferrer');
64
+ node.setAttribute('target', '_blank');
65
+ }
66
+ });
55
67
  }
56
- }, []);
57
- return /*#__PURE__*/_react.default.createElement("div", {
58
- // eslint-disable-next-line react/no-danger
59
- dangerouslySetInnerHTML: {
60
- __html: _dompurify.default.sanitize(value)
61
- }
62
- });
63
- }
68
+ return (react_1.default.createElement("div", {
69
+ // eslint-disable-next-line react/no-danger
70
+ dangerouslySetInnerHTML: {
71
+ __html: dompurify_1.default.sanitize(value),
72
+ } }));
73
+ }
74
+ exports.default = SanitizedHTML;