@jbrowse/core 1.7.11 → 2.1.0

package/configuration/configurationSlot.test.js

@@ -1,69 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
-
-test('can convert a string slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
-    type: 'string',
-    defaultValue: 'foo'
-  });
-  var instance = model.create();
-  expect(instance.value).toBe('foo');
-  expect(instance.expr.evalSync()).toBe('foo');
-  instance.convertToCallback();
-  expect(instance.value).toBe('jexl:"foo"');
-  expect(instance.expr.evalSync()).toBe('foo');
-  instance.convertToValue();
-  expect(instance.value).toBe('foo');
-  expect(instance.expr.evalSync()).toBe('foo');
-});
-test('can convert a numeric slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
-    type: 'number',
-    defaultValue: 12,
-    contextVariable: ['something']
-  });
-  var instance = model.create();
-  expect(instance.value).toBe(12);
-  expect(instance.expr.evalSync()).toBe(12);
-  instance.convertToCallback();
-  expect(instance.value).toBe('jexl:12');
-  expect(instance.expr.evalSync()).toBe(12);
-});
-test('can convert a stringArray slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
-    type: 'stringArray',
-    defaultValue: ['foo', 'bar']
-  });
-  var instance = model.create();
-  expect(instance.value).toEqual(['foo', 'bar']);
-  expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
-  instance.convertToCallback();
-  expect(instance.value).toContain('jexl:');
-  expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
-  instance.convertToValue();
-  expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
-  expect(instance.value).toEqual(['foo', 'bar']);
-});
-test('can convert a slot with a default function value to a scalar value', function () {
-  var model = (0, _configurationSlot.default)('tester', {
-    type: 'string',
-    defaultValue: 'jexl:get(feature,"foo")'
-  });
-  var instance = model.create();
-  expect(instance.value).toBe('jexl:get(feature,"foo")');
-  expect(function () {
-    return instance.expr.evalSync();
-  }).toThrow();
-  instance.convertToCallback();
-  expect(instance.value).toBe('jexl:get(feature,"foo")');
-  expect(function () {
-    return instance.expr.evalSync();
-  }).toThrow();
-  instance.convertToValue();
-  expect(instance.value).not.toContain('jexl:');
-  expect(instance.value).toBe('');
-  expect(instance.expr.evalSync()).toEqual('');
-});

package/configuration/util.test.js

@@ -1,39 +0,0 @@
-"use strict";
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _configurationSchema = require("./configurationSchema");
-
-var _util = require("./util");
-
-describe('getTypeNamesFromExplicitlyTypedUnion', function () {
-  test('regular config schemas', function () {
-    var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
-      explicitlyTyped: true
-    });
-    var two = (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
-      explicitlyTyped: true
-    });
-
-    var u = _mobxStateTree.types.union(one, two);
-
-    var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
-    expect(names).toEqual(['One', 'Two']);
-  });
-  test('late config schemas', function () {
-    var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
-      explicitlyTyped: true
-    });
-
-    var two = _mobxStateTree.types.late(function () {
-      return (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
-        explicitlyTyped: true
-      });
-    });
-
-    var u = _mobxStateTree.types.union(one, two);
-
-    var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
-    expect(names).toEqual(['One', 'Two']);
-  });
-});

package/data_adapters/BaseAdapter.test.js

@@ -1,200 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _operators = require("rxjs/operators");
-
-var _BaseAdapter = require("./BaseAdapter");
-
-var _rxjs = require("../util/rxjs");
-
-var _simpleFeature = _interopRequireDefault(require("../util/simpleFeature"));
-
-var _configurationSchema = require("../configuration/configurationSchema");
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-describe('base data adapter', function () {
-  it('properly propagates errors in feature fetching', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-    var Adapter, adapter, features, featuresArray;
-    return _regenerator.default.wrap(function _callee2$(_context2) {
-      while (1) {
-        switch (_context2.prev = _context2.next) {
-          case 0:
-            Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-              (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt);
-
-              var _super = _createSuper(Adapter);
-
-              function Adapter() {
-                (0, _classCallCheck2.default)(this, Adapter);
-                return _super.apply(this, arguments);
-              }
-
-              (0, _createClass2.default)(Adapter, [{
-                key: "getRefNames",
-                value: function () {
-                  var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-                    return _regenerator.default.wrap(function _callee$(_context) {
-                      while (1) {
-                        switch (_context.prev = _context.next) {
-                          case 0:
-                            return _context.abrupt("return", ['ctgA', 'ctgB']);
-
-                          case 1:
-                          case "end":
-                            return _context.stop();
-                        }
-                      }
-                    }, _callee);
-                  }));
-
-                  function getRefNames() {
-                    return _getRefNames.apply(this, arguments);
-                  }
-
-                  return getRefNames;
-                }()
-              }, {
-                key: "getFeatures",
-                value: function getFeatures(_region) {
-                  return (0, _rxjs.ObservableCreate)(function () {
-                    return Promise.reject(new Error('something blew up'));
-                  });
-                }
-              }, {
-                key: "freeResources",
-                value: function freeResources() {}
-              }]);
-              return Adapter;
-            }(_BaseAdapter.BaseFeatureDataAdapter);
-
-            adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
-            features = adapter.getFeatures({
-              assemblyName: 'volvox',
-              refName: 'ctgA',
-              start: 0,
-              end: 20000
-            });
-            featuresArray = features.pipe((0, _operators.toArray)()).toPromise();
-            expect(featuresArray).rejects.toThrow(/something blew up/);
-
-          case 5:
-          case "end":
-            return _context2.stop();
-        }
-      }
-    }, _callee2);
-  })));
-  it('retrieves features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
-    var Adapter, adapter, features, featuresArray, features2, featuresArray2;
-    return _regenerator.default.wrap(function _callee4$(_context4) {
-      while (1) {
-        switch (_context4.prev = _context4.next) {
-          case 0:
-            Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt2) {
-              (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt2);
-
-              var _super2 = _createSuper(Adapter);
-
-              function Adapter() {
-                (0, _classCallCheck2.default)(this, Adapter);
-                return _super2.apply(this, arguments);
-              }
-
-              (0, _createClass2.default)(Adapter, [{
-                key: "getRefNames",
-                value: function () {
-                  var _getRefNames2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-                    return _regenerator.default.wrap(function _callee3$(_context3) {
-                      while (1) {
-                        switch (_context3.prev = _context3.next) {
-                          case 0:
-                            return _context3.abrupt("return", ['ctgA', 'ctgB']);
-
-                          case 1:
-                          case "end":
-                            return _context3.stop();
-                        }
-                      }
-                    }, _callee3);
-                  }));
-
-                  function getRefNames() {
-                    return _getRefNames2.apply(this, arguments);
-                  }
-
-                  return getRefNames;
-                }()
-              }, {
-                key: "getFeatures",
-                value: function getFeatures(region) {
-                  return (0, _rxjs.ObservableCreate)(function (observer) {
-                    if (region.refName === 'ctgA') {
-                      observer.next(new _simpleFeature.default({
-                        uniqueId: 'testFeature',
-                        start: 100,
-                        end: 200
-                      }));
-                    }
-
-                    observer.complete();
-                  });
-                }
-              }, {
-                key: "freeResources",
-                value: function freeResources() {}
-              }]);
-              return Adapter;
-            }(_BaseAdapter.BaseFeatureDataAdapter);
-
-            adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
-            features = adapter.getFeatures({
-              assemblyName: 'volvox',
-              refName: 'ctgA',
-              start: 0,
-              end: 20000
-            });
-            _context4.next = 5;
-            return features.pipe((0, _operators.toArray)()).toPromise();
-
-          case 5:
-            featuresArray = _context4.sent;
-            expect(featuresArray).toMatchInlineSnapshot("\n      Array [\n        Object {\n          \"end\": 200,\n          \"start\": 100,\n          \"uniqueId\": \"testFeature\",\n        },\n      ]\n    ");
-            features2 = adapter.getFeatures({
-              assemblyName: 'volvox',
-              refName: 'ctgC',
-              start: 0,
-              end: 20000
-            });
-            _context4.next = 10;
-            return features2.pipe((0, _operators.toArray)()).toPromise();
-
-          case 10:
-            featuresArray2 = _context4.sent;
-            expect(featuresArray2).toMatchInlineSnapshot('Array []');
-
-          case 12:
-          case "end":
-            return _context4.stop();
-        }
-      }
-    }, _callee4);
-  })));
-});

package/declare.d.js

@@ -1 +0,0 @@
-"use strict";

package/pluggableElementTypes/RpcMethodType.test.js

@@ -1,118 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.MockRpcMethodType = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _PluginManager = _interopRequireDefault(require("../PluginManager"));
-
-var _RpcMethodType2 = _interopRequireDefault(require("./RpcMethodType"));
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var pluginManager = new _PluginManager.default();
-
-var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
-  (0, _inherits2.default)(MockRpcMethodType, _RpcMethodType);
-
-  var _super = _createSuper(MockRpcMethodType);
-
-  function MockRpcMethodType() {
-    (0, _classCallCheck2.default)(this, MockRpcMethodType);
-    return _super.apply(this, arguments);
-  }
-
-  (0, _createClass2.default)(MockRpcMethodType, [{
-    key: "execute",
-    value: function () {
-      var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
-              case "end":
-                return _context.stop();
-            }
-          }
-        }, _callee);
-      }));
-
-      function execute() {
-        return _execute.apply(this, arguments);
-      }
-
-      return execute;
-    }()
-  }]);
-  return MockRpcMethodType;
-}(_RpcMethodType2.default);
-
-exports.MockRpcMethodType = MockRpcMethodType;
-test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-  var mockRpc, locationInAdapter, deeplyNestedLocation;
-  return _regenerator.default.wrap(function _callee2$(_context2) {
-    while (1) {
-      switch (_context2.prev = _context2.next) {
-        case 0:
-          mockRpc = new MockRpcMethodType(pluginManager);
-          mockRpc.serializeNewAuthArguments = jest.fn().mockReturnValue({
-            locationType: 'UriLocation',
-            uri: 'test',
-            internetAccountId: 'HTTPBasicInternetAccount-test'
-          });
-          locationInAdapter = {
-            locationType: 'UriLocation',
-            uri: 'test',
-            internetAccountId: 'HTTPBasicInternetAccount-test'
-          };
-          deeplyNestedLocation = {
-            locationType: 'UriLocation',
-            uri: 'test2',
-            internetAccountId: 'HTTPBasicInternetAccount-test2'
-          };
-          _context2.next = 6;
-          return mockRpc.serializeArguments({
-            adapter: {
-              testLocation: locationInAdapter
-            },
-            filters: [],
-            signal: 'teststring',
-            randomProperty: 'randomstring',
-            parentObject: {
-              nestedObject: {
-                arrayInNestedObject: [deeplyNestedLocation]
-              }
-            }
-          }, '');
-
-        case 6:
-          expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledTimes(2);
-          expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(locationInAdapter);
-          expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(deeplyNestedLocation);
-
-        case 9:
-        case "end":
-          return _context2.stop();
-      }
-    }
-  }, _callee2);
-})));

package/pluggableElementTypes/renderers/declare.d.js

@@ -1 +0,0 @@
-"use strict";

package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js

@@ -1,20 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _serializableFilterChain = _interopRequireDefault(require("./serializableFilterChain"));
-
-test('one', function () {
-  var c = new _serializableFilterChain.default({
-    filters: ["jexl:feature.y == 2"]
-  });
-  expect(c.passes({
-    y: 1
-  })).toBe(false);
-  expect(c.passes({
-    y: 2
-  })).toBe(true);
-  expect(c.toJSON()).toEqual({
-    filters: ['jexl:feature.y == 2']
-  });
-});