@jbrowse/core 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (204) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +20 -4
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -558
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -473
  4. package/BaseFeatureWidget/index.d.ts +2 -2
  5. package/BaseFeatureWidget/index.js +88 -124
  6. package/BaseFeatureWidget/types.d.ts +1 -0
  7. package/BaseFeatureWidget/types.js +1 -4
  8. package/BaseFeatureWidget/util.js +40 -75
  9. package/CorePlugin.js +55 -94
  10. package/Plugin.js +9 -34
  11. package/PluginLoader.js +153 -422
  12. package/PluginManager.d.ts +84 -117
  13. package/PluginManager.js +377 -666
  14. package/ReExports/Attributes.d.ts +2 -0
  15. package/ReExports/Attributes.js +5 -0
  16. package/ReExports/BaseCard.d.ts +2 -0
  17. package/ReExports/BaseCard.js +5 -0
  18. package/ReExports/DataGrid.d.ts +2 -0
  19. package/ReExports/DataGrid.js +6 -0
  20. package/ReExports/FeatureDetails.d.ts +2 -0
  21. package/ReExports/FeatureDetails.js +5 -0
  22. package/ReExports/index.js +6 -12
  23. package/ReExports/list.d.ts +5 -0
  24. package/ReExports/list.js +271 -7
  25. package/ReExports/material-ui-colors.d.ts +1 -19
  26. package/ReExports/material-ui-colors.js +16 -158
  27. package/ReExports/modules.d.ts +68 -109
  28. package/ReExports/modules.js +455 -244
  29. package/TextSearch/BaseResults.js +51 -123
  30. package/TextSearch/TextSearchManager.d.ts +3 -1
  31. package/TextSearch/TextSearchManager.js +66 -144
  32. package/assemblyManager/assembly.js +280 -554
  33. package/assemblyManager/assemblyConfigSchema.js +47 -64
  34. package/assemblyManager/assemblyManager.d.ts +12 -10
  35. package/assemblyManager/assemblyManager.js +126 -270
  36. package/assemblyManager/index.js +9 -22
  37. package/configuration/configurationSchema.js +167 -203
  38. package/configuration/configurationSlot.js +248 -326
  39. package/configuration/index.js +19 -35
  40. package/configuration/util.d.ts +1 -1
  41. package/configuration/util.js +131 -173
  42. package/data_adapters/BaseAdapter.d.ts +2 -2
  43. package/data_adapters/BaseAdapter.js +132 -521
  44. package/data_adapters/CytobandAdapter.js +40 -126
  45. package/data_adapters/dataAdapterCache.js +77 -158
  46. package/package.json +16 -18
  47. package/pluggableElementTypes/AdapterType.js +24 -79
  48. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  49. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  50. package/pluggableElementTypes/ConnectionType.js +22 -65
  51. package/pluggableElementTypes/DisplayType.js +35 -82
  52. package/pluggableElementTypes/InternetAccountType.js +23 -64
  53. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  54. package/pluggableElementTypes/RpcMethodType.js +85 -427
  55. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  56. package/pluggableElementTypes/TrackType.js +26 -70
  57. package/pluggableElementTypes/ViewType.js +21 -63
  58. package/pluggableElementTypes/WidgetType.js +21 -64
  59. package/pluggableElementTypes/index.d.ts +4 -3
  60. package/pluggableElementTypes/index.js +42 -125
  61. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  62. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +10 -10
  63. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  64. package/pluggableElementTypes/models/BaseTrackModel.d.ts +1 -1
  65. package/pluggableElementTypes/models/BaseTrackModel.js +139 -200
  66. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  67. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  68. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  69. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  70. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  71. package/pluggableElementTypes/models/index.js +21 -70
  72. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  73. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  74. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  75. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  76. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
  77. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  78. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  79. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +2 -2
  80. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  81. package/pluggableElementTypes/renderers/index.js +19 -62
  82. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  83. package/rpc/BaseRpcDriver.js +169 -405
  84. package/rpc/MainThreadRpcDriver.js +27 -150
  85. package/rpc/RpcManager.js +58 -159
  86. package/rpc/WebWorkerRpcDriver.js +54 -171
  87. package/rpc/configSchema.js +25 -49
  88. package/rpc/coreRpcMethods.d.ts +1 -3
  89. package/rpc/coreRpcMethods.js +221 -959
  90. package/rpc/remoteAbortSignals.js +46 -70
  91. package/tsconfig.build.tsbuildinfo +1 -1
  92. package/ui/AboutDialog.js +107 -158
  93. package/ui/App.js +157 -261
  94. package/ui/AssemblySelector.d.ts +1 -1
  95. package/ui/AssemblySelector.js +59 -115
  96. package/ui/CascadingMenu.js +100 -199
  97. package/ui/ColorPicker.d.ts +16 -0
  98. package/ui/ColorPicker.js +97 -0
  99. package/ui/Drawer.js +28 -58
  100. package/ui/DrawerWidget.js +109 -209
  101. package/ui/DropDownMenu.d.ts +0 -8
  102. package/ui/DropDownMenu.js +60 -97
  103. package/ui/EditableTypography.d.ts +1 -1
  104. package/ui/EditableTypography.js +87 -155
  105. package/ui/ErrorMessage.js +41 -66
  106. package/ui/FactoryResetDialog.js +24 -57
  107. package/ui/FatalErrorDialog.js +59 -91
  108. package/ui/FileSelector/FileSelector.js +123 -189
  109. package/ui/FileSelector/LocalFileChooser.js +44 -71
  110. package/ui/FileSelector/UrlChooser.js +17 -38
  111. package/ui/FileSelector/index.js +6 -12
  112. package/ui/Icons.d.ts +1 -1
  113. package/ui/Icons.js +45 -69
  114. package/ui/Logo.js +57 -110
  115. package/ui/Menu.d.ts +1 -1
  116. package/ui/Menu.js +232 -355
  117. package/ui/PrerenderedCanvas.js +63 -78
  118. package/ui/ResizeHandle.js +87 -114
  119. package/ui/ReturnToImportFormDialog.js +32 -59
  120. package/ui/SanitizedHTML.js +63 -52
  121. package/ui/Snackbar.js +74 -99
  122. package/ui/SnackbarModel.js +37 -51
  123. package/ui/Tooltip.d.ts +3 -1
  124. package/ui/Tooltip.js +49 -74
  125. package/ui/ViewContainer.js +113 -183
  126. package/ui/colors.d.ts +10 -0
  127. package/ui/colors.js +78 -0
  128. package/ui/index.js +51 -181
  129. package/ui/react-colorful.d.ts +17 -0
  130. package/ui/react-colorful.js +455 -0
  131. package/ui/theme.d.ts +279 -131
  132. package/ui/theme.js +197 -225
  133. package/util/Base1DUtils.d.ts +32 -0
  134. package/util/Base1DUtils.js +174 -0
  135. package/util/Base1DViewModel.d.ts +16 -37
  136. package/util/Base1DViewModel.js +116 -295
  137. package/util/QuickLRU.js +84 -332
  138. package/util/TimeTraveller.d.ts +19 -0
  139. package/util/TimeTraveller.js +86 -0
  140. package/util/aborting.js +49 -127
  141. package/util/analytics.js +91 -154
  142. package/util/blockTypes.js +106 -240
  143. package/util/calculateDynamicBlocks.js +98 -128
  144. package/util/calculateStaticBlocks.js +105 -125
  145. package/util/color/cssColorsLevel4.js +156 -160
  146. package/util/color/index.js +33 -55
  147. package/util/compositeMap.js +49 -333
  148. package/util/formatFastaStrings.js +9 -14
  149. package/util/idMaker.js +18 -31
  150. package/util/index.d.ts +18 -39
  151. package/util/index.js +743 -1236
  152. package/util/io/RemoteFileWithRangeCache.js +88 -257
  153. package/util/io/index.js +95 -169
  154. package/util/jexl.js +60 -115
  155. package/util/jexlStrings.js +24 -29
  156. package/util/layouts/BaseLayout.js +1 -4
  157. package/util/layouts/GranularRectLayout.js +388 -557
  158. package/util/layouts/MultiLayout.js +41 -109
  159. package/util/layouts/PrecomputedLayout.js +56 -114
  160. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  161. package/util/layouts/SceneGraph.js +127 -197
  162. package/util/layouts/index.js +29 -66
  163. package/util/mst-reflection.js +55 -71
  164. package/util/offscreenCanvasPonyfill.js +66 -134
  165. package/util/offscreenCanvasUtils.d.ts +2 -7
  166. package/util/offscreenCanvasUtils.js +49 -146
  167. package/util/range.js +29 -40
  168. package/util/rxjs.js +20 -27
  169. package/util/simpleFeature.js +88 -152
  170. package/util/stats.js +91 -151
  171. package/util/tracks.js +130 -171
  172. package/util/types/index.d.ts +3 -3
  173. package/util/types/index.js +110 -179
  174. package/util/types/mst.d.ts +3 -3
  175. package/util/types/mst.js +91 -142
  176. package/util/types/util.js +1 -4
  177. package/util/when.js +54 -101
  178. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  179. package/BaseFeatureWidget/index.test.js +0 -51
  180. package/TextSearch/BaseResults.test.js +0 -42
  181. package/configuration/configurationSchema.test.js +0 -266
  182. package/configuration/configurationSlot.test.js +0 -69
  183. package/configuration/util.test.js +0 -39
  184. package/data_adapters/BaseAdapter.test.js +0 -200
  185. package/declare.d.js +0 -1
  186. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  187. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  188. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  189. package/rpc/BaseRpcDriver.test.js +0 -540
  190. package/rpc/declaration.d.js +0 -1
  191. package/ui/FatalErrorDialog.test.js +0 -82
  192. package/ui/SanitizedHTML.test.js +0 -36
  193. package/ui/theme.test.js +0 -111
  194. package/util/Base1DViewModel.test.js +0 -130
  195. package/util/calculateDynamicBlocks.test.js +0 -74
  196. package/util/calculateStaticBlocks.test.js +0 -297
  197. package/util/declare.d.js +0 -1
  198. package/util/formatFastaStrings.test.js +0 -40
  199. package/util/index.test.js +0 -213
  200. package/util/jexlStrings.test.js +0 -48
  201. package/util/layouts/GranularRectLayout.test.js +0 -99
  202. package/util/range.test.js +0 -64
  203. package/util/simpleFeature.test.js +0 -34
  204. package/util/stats.test.js +0 -172
@@ -1,76 +1,65 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _typeof = require("@babel/runtime/helpers/typeof");
6
-
7
- Object.defineProperty(exports, "__esModule", {
8
- value: true
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
9
17
  });
10
- exports.default = ServerSideRenderedContent;
11
-
12
- var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
13
-
14
- var _styles = require("@material-ui/core/styles");
15
-
16
- var _react = _interopRequireWildcard(require("react"));
17
-
18
- var _reactDom = require("react-dom");
19
-
20
- var _ui = require("../../ui");
21
-
22
- var _util = require("../../util");
23
-
24
- var _excluded = ["theme", "html", "RenderingComponent"];
25
-
26
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
27
-
28
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
29
-
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ Object.defineProperty(exports, "__esModule", { value: true });
26
+ const react_1 = __importStar(require("react"));
27
+ const styles_1 = require("@mui/material/styles");
28
+ const react_dom_1 = require("react-dom");
29
+ const ui_1 = require("../../ui");
30
+ const util_1 = require("../../util");
30
31
  function ServerSideRenderedContent(props) {
31
- var ssrContainerNode = (0, _react.useRef)(null);
32
- var theme = props.theme,
33
- html = props.html,
34
- RenderingComponent = props.RenderingComponent,
35
- rest = (0, _objectWithoutProperties2.default)(props, _excluded);
36
- var jbrowseTheme = (0, _ui.createJBrowseTheme)(theme);
37
- (0, _react.useEffect)(function () {
38
- var domNode = ssrContainerNode.current;
39
-
40
- function doHydrate() {
41
- if (domNode) {
42
- if (domNode) {
43
- (0, _reactDom.unmountComponentAtNode)(domNode);
32
+ const ssrContainerNode = (0, react_1.useRef)(null);
33
+ const { theme, html, RenderingComponent, ...rest } = props;
34
+ const jbrowseTheme = (0, ui_1.createJBrowseTheme)(theme);
35
+ (0, react_1.useEffect)(() => {
36
+ const domNode = ssrContainerNode.current;
37
+ function doHydrate() {
38
+ if (domNode) {
39
+ if (domNode) {
40
+ (0, react_dom_1.unmountComponentAtNode)(domNode);
41
+ }
42
+ domNode.innerHTML = html;
43
+ // defer main-thread rendering and hydration for when
44
+ // we have some free time. helps keep the framerate up.
45
+ //
46
+ // note: the timeout param to rIC below helps when you are doing
47
+ // a long continuous scroll, it forces it to evaluate because
48
+ // otherwise the continuous scroll would never give it time to do
49
+ // so
50
+ (0, util_1.rIC)(() => {
51
+ (0, react_dom_1.hydrate)(react_1.default.createElement(styles_1.ThemeProvider, { theme: jbrowseTheme },
52
+ react_1.default.createElement(RenderingComponent, { ...rest })), domNode);
53
+ }, { timeout: 300 });
54
+ }
44
55
  }
45
-
46
- domNode.innerHTML = html; // defer main-thread rendering and hydration for when
47
- // we have some free time. helps keep the framerate up.
48
- //
49
- // note: the timeout param to rIC below helps when you are doing
50
- // a long continuous scroll, it forces it to evaluate because
51
- // otherwise the continuous scroll would never give it time to do
52
- // so
53
-
54
- (0, _util.rIC)(function () {
55
- (0, _reactDom.hydrate)( /*#__PURE__*/_react.default.createElement(_styles.ThemeProvider, {
56
- theme: jbrowseTheme
57
- }, /*#__PURE__*/_react.default.createElement(RenderingComponent, rest)), domNode);
58
- }, {
59
- timeout: 300
60
- });
61
- }
62
- }
63
-
64
- doHydrate();
65
- return function () {
66
- if (domNode) {
67
- (0, _reactDom.unmountComponentAtNode)(domNode);
68
- }
69
- };
70
- }, [html, jbrowseTheme, rest, RenderingComponent]);
71
- return /*#__PURE__*/_react.default.createElement("div", {
72
- ref: ssrContainerNode,
73
- "data-html-size": html.length,
74
- className: "ssr-container"
75
- });
76
- }
56
+ doHydrate();
57
+ return () => {
58
+ if (domNode) {
59
+ (0, react_dom_1.unmountComponentAtNode)(domNode);
60
+ }
61
+ };
62
+ }, [html, jbrowseTheme, rest, RenderingComponent]);
63
+ return (react_1.default.createElement("div", { ref: ssrContainerNode, "data-html-size": html.length, className: "ssr-container" }));
64
+ }
65
+ exports.default = ServerSideRenderedContent;
@@ -1,4 +1,4 @@
1
- import { ThemeOptions } from '@material-ui/core';
1
+ import { DeprecatedThemeOptions } from '@mui/material';
2
2
  import { SnapshotOrInstance, SnapshotIn } from 'mobx-state-tree';
3
3
  import RendererType, { RenderProps, RenderResults } from './RendererType';
4
4
  import SerializableFilterChain, { SerializedFilterChain } from './util/serializableFilterChain';
@@ -7,7 +7,7 @@ import RpcManager from '../../rpc/RpcManager';
7
7
  interface BaseRenderArgs extends RenderProps {
8
8
  sessionId: string;
9
9
  signal?: AbortSignal;
10
- theme: ThemeOptions;
10
+ theme: DeprecatedThemeOptions;
11
11
  exportSVG: {
12
12
  rasterizeLayers?: boolean;
13
13
  };
@@ -1,85 +1,45 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _typeof = require("@babel/runtime/helpers/typeof");
6
-
7
- Object.defineProperty(exports, "__esModule", {
8
- value: true
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
9
17
  });
10
- exports.default = void 0;
11
-
12
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
13
-
14
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
15
-
16
- var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
17
-
18
- var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
19
-
20
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
21
-
22
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
23
-
24
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
25
-
26
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
27
-
28
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
29
-
30
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
31
-
32
- var _react = _interopRequireDefault(require("react"));
33
-
34
- var _styles = require("@material-ui/core/styles");
35
-
36
- var _canvasSequencer = require("canvas-sequencer");
37
-
38
- var _server = require("react-dom/server");
39
-
40
- var _mobxStateTree = require("mobx-state-tree");
41
-
42
- var _util = require("../../util");
43
-
44
- var _RendererType2 = _interopRequireDefault(require("./RendererType"));
45
-
46
- var _serializableFilterChain = _interopRequireDefault(require("./util/serializableFilterChain"));
47
-
48
- var _ui = require("../../ui");
49
-
50
- var _ServerSideRenderedContent = _interopRequireDefault(require("./ServerSideRenderedContent"));
51
-
52
- var _excluded = ["html"];
53
-
54
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
55
-
56
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
57
-
58
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
59
-
60
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
61
-
62
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
63
-
64
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
65
-
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ var __importDefault = (this && this.__importDefault) || function (mod) {
26
+ return (mod && mod.__esModule) ? mod : { "default": mod };
27
+ };
28
+ Object.defineProperty(exports, "__esModule", { value: true });
29
+ const react_1 = __importDefault(require("react"));
30
+ const styles_1 = require("@mui/material/styles");
31
+ const canvas_sequencer_1 = require("canvas-sequencer");
32
+ const server_1 = require("react-dom/server");
33
+ const mobx_state_tree_1 = require("mobx-state-tree");
34
+ const util_1 = require("../../util");
35
+ const RendererType_1 = __importDefault(require("./RendererType"));
36
+ const serializableFilterChain_1 = __importDefault(require("./util/serializableFilterChain"));
37
+ const ui_1 = require("../../ui");
38
+ const ServerSideRenderedContent_1 = __importDefault(require("./ServerSideRenderedContent"));
66
39
  function isSvgExport(elt) {
67
- return 'canvasRecordedData' in elt;
40
+ return 'canvasRecordedData' in elt;
68
41
  }
69
-
70
- var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
71
- (0, _inherits2.default)(ServerSideRenderer, _RendererType);
72
-
73
- var _super = _createSuper(ServerSideRenderer);
74
-
75
- function ServerSideRenderer() {
76
- (0, _classCallCheck2.default)(this, ServerSideRenderer);
77
- return _super.apply(this, arguments);
78
- }
79
-
80
- (0, _createClass2.default)(ServerSideRenderer, [{
81
- key: "serializeArgsInClient",
82
- value:
42
+ class ServerSideRenderer extends RendererType_1.default {
83
43
  /**
84
44
  * directly modifies the render arguments to prepare them to be serialized and
85
45
  * sent to the worker.
@@ -87,11 +47,14 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
87
47
  * @param args - the arguments passed to render
88
48
  * @returns the same object
89
49
  */
90
- function serializeArgsInClient(args) {
91
- return _objectSpread(_objectSpread({}, args), {}, {
92
- config: (0, _mobxStateTree.isStateTreeNode)(args.config) ? (0, _mobxStateTree.getSnapshot)(args.config) : args.config,
93
- filters: args.filters && args.filters.toJSON().filters
94
- });
50
+ serializeArgsInClient(args) {
51
+ return {
52
+ ...args,
53
+ config: (0, mobx_state_tree_1.isStateTreeNode)(args.config)
54
+ ? (0, mobx_state_tree_1.getSnapshot)(args.config)
55
+ : args.config,
56
+ filters: args.filters && args.filters.toJSON().filters,
57
+ };
95
58
  }
96
59
  /**
97
60
  * Deserialize the render results from the worker in the client. Includes
@@ -101,28 +64,25 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
101
64
  * @param results - the results of the render
102
65
  * @param args - the arguments passed to render
103
66
  */
104
-
105
- }, {
106
- key: "deserializeResultsInClient",
107
- value: function deserializeResultsInClient(results, args) {
108
- var html = results.html,
109
- rest = (0, _objectWithoutProperties2.default)(results, _excluded); // if we are rendering svg, we skip hydration
110
-
111
- if (args.exportSVG) {
112
- // only return the results if the renderer explicitly has
113
- // this.supportsSVG support to avoid garbage being rendered in SVG
114
- // document
115
- return _objectSpread(_objectSpread({}, results), {}, {
116
- html: this.supportsSVG ? results.html : '<text y="12" fill="black">SVG export not supported for this track</text>'
117
- });
118
- } // hydrate results using ServerSideRenderedContent
119
-
120
-
121
- return _objectSpread(_objectSpread({}, rest), {}, {
122
- reactElement: /*#__PURE__*/_react.default.createElement(_ServerSideRenderedContent.default, (0, _extends2.default)({}, args, results, {
123
- RenderingComponent: this.ReactComponent
124
- }))
125
- });
67
+ deserializeResultsInClient(results, args) {
68
+ const { html, ...rest } = results;
69
+ // if we are rendering svg, we skip hydration
70
+ if (args.exportSVG) {
71
+ // only return the results if the renderer explicitly has
72
+ // this.supportsSVG support to avoid garbage being rendered in SVG
73
+ // document
74
+ return {
75
+ ...results,
76
+ html: this.supportsSVG
77
+ ? results.html
78
+ : '<text y="12" fill="black">SVG export not supported for this track</text>',
79
+ };
80
+ }
81
+ // hydrate results using ServerSideRenderedContent
82
+ return {
83
+ ...rest,
84
+ reactElement: (react_1.default.createElement(ServerSideRenderedContent_1.default, { ...args, ...results, RenderingComponent: this.ReactComponent })),
85
+ };
126
86
  }
127
87
  /**
128
88
  * modifies the passed arguments object to inflate arguments as necessary.
@@ -130,19 +90,15 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
130
90
  *
131
91
  * @param args - the converted arguments to modify
132
92
  */
133
-
134
- }, {
135
- key: "deserializeArgsInWorker",
136
- value: function deserializeArgsInWorker(args) {
137
- var deserialized = _objectSpread({}, args);
138
-
139
- deserialized.config = this.configSchema.create(args.config || {}, {
140
- pluginManager: this.pluginManager
141
- });
142
- deserialized.filters = new _serializableFilterChain.default({
143
- filters: args.filters
144
- });
145
- return deserialized;
93
+ deserializeArgsInWorker(args) {
94
+ const deserialized = { ...args };
95
+ deserialized.config = this.configSchema.create(args.config || {}, {
96
+ pluginManager: this.pluginManager,
97
+ });
98
+ deserialized.filters = new serializableFilterChain_1.default({
99
+ filters: args.filters,
100
+ });
101
+ return deserialized;
146
102
  }
147
103
  /**
148
104
  * Serialize results of the render to send them to the client. Includes
@@ -152,17 +108,10 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
152
108
  * method
153
109
  * @param args - deserialized render args
154
110
  */
155
-
156
- }, {
157
- key: "serializeResultsInWorker",
158
- value: function serializeResultsInWorker(results, args) {
159
- var html = (0, _server.renderToString)( /*#__PURE__*/_react.default.createElement(_styles.ThemeProvider, {
160
- theme: (0, _ui.createJBrowseTheme)(args.theme)
161
- }, results.reactElement));
162
- delete results.reactElement;
163
- return _objectSpread(_objectSpread({}, results), {}, {
164
- html: html
165
- });
111
+ serializeResultsInWorker(results, args) {
112
+ const html = (0, server_1.renderToString)(react_1.default.createElement(styles_1.ThemeProvider, { theme: (0, ui_1.createJBrowseTheme)(args.theme) }, results.reactElement));
113
+ delete results.reactElement;
114
+ return { ...results, html };
166
115
  }
167
116
  /**
168
117
  * Render method called on the client. Serializes args, then calls
@@ -171,145 +120,43 @@ var ServerSideRenderer = /*#__PURE__*/function (_RendererType) {
171
120
  * @param rpcManager - RPC mananger
172
121
  * @param args - render args
173
122
  */
174
-
175
- }, {
176
- key: "renderInClient",
177
- value: function () {
178
- var _renderInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rpcManager, args) {
179
- var results, width, height, canvasRecordedData, C2S, ctx, seq, str;
180
- return _regenerator.default.wrap(function _callee$(_context) {
181
- while (1) {
182
- switch (_context.prev = _context.next) {
183
- case 0:
184
- _context.next = 2;
185
- return rpcManager.call(args.sessionId, 'CoreRender', args);
186
-
187
- case 2:
188
- results = _context.sent;
189
-
190
- if (!isSvgExport(results)) {
191
- _context.next = 14;
192
- break;
193
- }
194
-
195
- width = results.width, height = results.height, canvasRecordedData = results.canvasRecordedData;
196
- _context.next = 7;
197
- return Promise.resolve().then(function () {
198
- return _interopRequireWildcard(require('canvas2svg'));
199
- });
200
-
201
- case 7:
202
- C2S = _context.sent;
203
- ctx = new C2S.default(width, height);
204
- seq = new _canvasSequencer.CanvasSequence(canvasRecordedData);
205
- seq.execute(ctx);
206
- str = ctx.getSvg(); // innerHTML strips the outer <svg> element from returned data, we add
207
- // our own <svg> element in the view's SVG export
208
-
209
- results.html = str.innerHTML;
210
- delete results.reactElement;
211
-
212
- case 14:
213
- return _context.abrupt("return", results);
214
-
215
- case 15:
216
- case "end":
217
- return _context.stop();
218
- }
219
- }
220
- }, _callee);
221
- }));
222
-
223
- function renderInClient(_x, _x2) {
224
- return _renderInClient.apply(this, arguments);
225
- }
226
-
227
- return renderInClient;
228
- }()
123
+ async renderInClient(rpcManager, args) {
124
+ const results = (await rpcManager.call(args.sessionId, 'CoreRender', args));
125
+ if (isSvgExport(results)) {
126
+ const { width, height, canvasRecordedData } = results;
127
+ const C2S = await Promise.resolve().then(() => __importStar(require('canvas2svg')));
128
+ const ctx = new C2S.default(width, height);
129
+ const seq = new canvas_sequencer_1.CanvasSequence(canvasRecordedData);
130
+ seq.execute(ctx);
131
+ const str = ctx.getSvg();
132
+ // innerHTML strips the outer <svg> element from returned data, we add
133
+ // our own <svg> element in the view's SVG export
134
+ results.html = str.innerHTML;
135
+ delete results.reactElement;
136
+ }
137
+ return results;
138
+ }
229
139
  /**
230
140
  * Render method called on the worker. `render` is called here in server-side
231
141
  * rendering
232
142
  *
233
143
  * @param args - serialized render args
234
144
  */
235
-
236
- }, {
237
- key: "renderInWorker",
238
- value: function () {
239
- var _renderInWorker = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(args) {
240
- var _this = this;
241
-
242
- var signal, _args$statusCallback, statusCallback, deserializedArgs, results;
243
-
244
- return _regenerator.default.wrap(function _callee2$(_context2) {
245
- while (1) {
246
- switch (_context2.prev = _context2.next) {
247
- case 0:
248
- signal = args.signal, _args$statusCallback = args.statusCallback, statusCallback = _args$statusCallback === void 0 ? function () {} : _args$statusCallback;
249
- deserializedArgs = this.deserializeArgsInWorker(args);
250
- _context2.next = 4;
251
- return (0, _util.updateStatus)('Rendering plot', statusCallback, function () {
252
- return _this.render(deserializedArgs);
253
- });
254
-
255
- case 4:
256
- results = _context2.sent;
257
- (0, _util.checkAbortSignal)(signal); // serialize the results for passing back to the main thread.
258
- // these will be transmitted to the main process, and will come out
259
- // as the result of renderRegionWithWorker.
260
-
261
- return _context2.abrupt("return", (0, _util.updateStatus)('Serializing results', statusCallback, function () {
262
- return _this.serializeResultsInWorker(results, deserializedArgs);
263
- }));
264
-
265
- case 7:
266
- case "end":
267
- return _context2.stop();
268
- }
269
- }
270
- }, _callee2, this);
271
- }));
272
-
273
- function renderInWorker(_x3) {
274
- return _renderInWorker.apply(this, arguments);
275
- }
276
-
277
- return renderInWorker;
278
- }()
279
- }, {
280
- key: "freeResourcesInClient",
281
- value: function () {
282
- var _freeResourcesInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(rpcManager, args) {
283
- var serializedArgs, freed, freedRpc;
284
- return _regenerator.default.wrap(function _callee3$(_context3) {
285
- while (1) {
286
- switch (_context3.prev = _context3.next) {
287
- case 0:
288
- serializedArgs = this.serializeArgsInClient(args);
289
- freed = this.freeResources();
290
- _context3.next = 4;
291
- return rpcManager.call(args.sessionId, 'CoreFreeResources', serializedArgs);
292
-
293
- case 4:
294
- freedRpc = _context3.sent;
295
- return _context3.abrupt("return", freed + freedRpc);
296
-
297
- case 6:
298
- case "end":
299
- return _context3.stop();
300
- }
301
- }
302
- }, _callee3, this);
303
- }));
304
-
305
- function freeResourcesInClient(_x4, _x5) {
306
- return _freeResourcesInClient.apply(this, arguments);
307
- }
308
-
309
- return freeResourcesInClient;
310
- }()
311
- }]);
312
- return ServerSideRenderer;
313
- }(_RendererType2.default);
314
-
315
- exports.default = ServerSideRenderer;
145
+ async renderInWorker(args) {
146
+ const { signal, statusCallback = () => { } } = args;
147
+ const deserializedArgs = this.deserializeArgsInWorker(args);
148
+ const results = await (0, util_1.updateStatus)('Rendering plot', statusCallback, () => this.render(deserializedArgs));
149
+ (0, util_1.checkAbortSignal)(signal);
150
+ // serialize the results for passing back to the main thread.
151
+ // these will be transmitted to the main process, and will come out
152
+ // as the result of renderRegionWithWorker.
153
+ return (0, util_1.updateStatus)('Serializing results', statusCallback, () => this.serializeResultsInWorker(results, deserializedArgs));
154
+ }
155
+ async freeResourcesInClient(rpcManager, args) {
156
+ const serializedArgs = this.serializeArgsInClient(args);
157
+ const freed = this.freeResources();
158
+ const freedRpc = (await rpcManager.call(args.sessionId, 'CoreFreeResources', serializedArgs));
159
+ return freed + freedRpc;
160
+ }
161
+ }
162
+ exports.default = ServerSideRenderer;