@jbrowse/core 1.7.11 → 2.1.0

package/BaseFeatureWidget/index.d.ts

@@ -25,9 +25,9 @@ export default function stateModelFactory(pluginManager: PluginManager): import(
 }>>, {
     id: string;
     type: "BaseFeatureWidget";
-    formattedFields: any;
-    view: import("mobx-state-tree").ReferenceIdentifier | undefined;
     track: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    view: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    formattedFields: any;
     finalizedFeatureData: any;
 }>;
 export { configSchema, stateModelFactory };

package/BaseFeatureWidget/index.js

@@ -1,129 +1,93 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.configSchema = void 0;
-exports.stateModelFactory = exports.default = stateModelFactory;
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _mobx = require("mobx");
-
-var _configuration = require("../configuration");
-
-var _clone = _interopRequireDefault(require("clone"));
-
-var _mst = require("../util/types/mst");
-
-var _excluded = ["featureData", "finalizedFeatureData"],
-    _excluded2 = ["unformattedFeatureData", "featureData"];
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-var configSchema = (0, _configuration.ConfigurationSchema)('BaseFeatureWidget', {});
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.stateModelFactory = exports.configSchema = void 0;
+const mobx_state_tree_1 = require("mobx-state-tree");
+const mobx_1 = require("mobx");
+const configuration_1 = require("../configuration");
+const clone_1 = __importDefault(require("clone"));
+const mst_1 = require("../util/types/mst");
+const configSchema = (0, configuration_1.ConfigurationSchema)('BaseFeatureWidget', {});
 exports.configSchema = configSchema;
-
-function formatSubfeatures(obj, depth, parse) {
-  var _obj$subfeatures;
-
-  var currentDepth = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : 0;
-  var returnObj = arguments.length > 4 && arguments[4] !== undefined ? arguments[4] : {};
-
-  if (depth <= currentDepth) {
+function formatSubfeatures(obj, depth, parse, currentDepth = 0, returnObj = {}) {
+    var _a;
+    if (depth <= currentDepth) {
+        return returnObj;
+    }
+    returnObj.subfeatures = (_a = obj.subfeatures) === null || _a === void 0 ? void 0 : _a.map(sub => {
+        formatSubfeatures(sub, depth, parse, currentDepth + 1, returnObj);
+        return parse(sub);
+    });
     return returnObj;
-  }
-
-  returnObj.subfeatures = (_obj$subfeatures = obj.subfeatures) === null || _obj$subfeatures === void 0 ? void 0 : _obj$subfeatures.map(function (sub) {
-    formatSubfeatures(sub, depth, parse, currentDepth + 1, returnObj);
-    return parse(sub);
-  });
-  return returnObj;
 }
-
 function stateModelFactory(pluginManager) {
-  return _mobxStateTree.types.model('BaseFeatureWidget', {
-    id: _mst.ElementId,
-    type: _mobxStateTree.types.literal('BaseFeatureWidget'),
-    featureData: _mobxStateTree.types.frozen(),
-    formattedFields: _mobxStateTree.types.frozen(),
-    unformattedFeatureData: _mobxStateTree.types.frozen(),
-    view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
-    track: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('track', 'stateModel'))
-  }).volatile(function () {
-    return {};
-  }).actions(function (self) {
-    return {
-      setFeatureData: function setFeatureData(featureData) {
-        self.unformattedFeatureData = featureData;
-      },
-      clearFeatureData: function clearFeatureData() {
-        self.featureData = undefined;
-      },
-      setFormattedData: function setFormattedData(feat) {
-        self.featureData = feat;
-      }
-    };
-  }).actions(function (self) {
-    return {
-      afterCreate: function afterCreate() {
-        (0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)(function () {
-          var unformattedFeatureData = self.unformattedFeatureData,
-              track = self.track;
-
-          if (unformattedFeatureData) {
-            var feature = (0, _clone.default)(unformattedFeatureData);
-
-            if (track) {
-              // eslint-disable-next-line no-underscore-dangle
-              feature.__jbrowsefmt = (0, _configuration.getConf)(track, ['formatDetails', 'feature'], {
-                feature: feature
-              });
-              var depth = (0, _configuration.getConf)(track, ['formatDetails', 'depth']);
-              formatSubfeatures(feature, depth, function (subfeature) {
-                // eslint-disable-next-line no-underscore-dangle
-                subfeature.__jbrowsefmt = (0, _configuration.getConf)(track, ['formatDetails', 'subfeatures'], {
-                  feature: subfeature
-                });
-              });
-            }
-
-            self.setFormattedData(feature);
-          }
-        }));
-      }
-    };
-  }).preProcessSnapshot(function (snap) {
-    // @ts-ignore
-    var featureData = snap.featureData,
-        finalizedFeatureData = snap.finalizedFeatureData,
-        rest = (0, _objectWithoutProperties2.default)(snap, _excluded);
-    return _objectSpread({
-      unformattedFeatureData: featureData,
-      featureData: finalizedFeatureData
-    }, rest);
-  }).postProcessSnapshot(function (snap) {
-    var unformattedFeatureData = snap.unformattedFeatureData,
-        featureData = snap.featureData,
-        rest = (0, _objectWithoutProperties2.default)(snap, _excluded2); // finalizedFeatureData avoids running formatter twice if loading from
-    // snapshot
-
-    return _objectSpread({
-      // replacing undefined with null helps with allowing fields to be
-      // hidden, setting null is not allowed by jexl so we set it to
-      // undefined to hide. see config guide. this replacement happens both
-      // here and when displaying the featureData in base feature widget
-      finalizedFeatureData: JSON.parse(JSON.stringify(featureData, function (_, v) {
-        return typeof v === 'undefined' ? null : v;
-      }))
-    }, rest);
-  });
-}
+    return mobx_state_tree_1.types
+        .model('BaseFeatureWidget', {
+        id: mst_1.ElementId,
+        type: mobx_state_tree_1.types.literal('BaseFeatureWidget'),
+        featureData: mobx_state_tree_1.types.frozen(),
+        formattedFields: mobx_state_tree_1.types.frozen(),
+        unformattedFeatureData: mobx_state_tree_1.types.frozen(),
+        view: mobx_state_tree_1.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
+        track: mobx_state_tree_1.types.safeReference(pluginManager.pluggableMstType('track', 'stateModel')),
+    })
+        .volatile(() => ({}))
+        .actions(self => ({
+        setFeatureData(featureData) {
+            self.unformattedFeatureData = featureData;
+        },
+        clearFeatureData() {
+            self.featureData = undefined;
+        },
+        setFormattedData(feat) {
+            self.featureData = feat;
+        },
+    }))
+        .actions(self => ({
+        afterCreate() {
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
+                const { unformattedFeatureData, track } = self;
+                if (unformattedFeatureData) {
+                    const feature = (0, clone_1.default)(unformattedFeatureData);
+                    if (track) {
+                        // eslint-disable-next-line no-underscore-dangle
+                        feature.__jbrowsefmt = (0, configuration_1.getConf)(track, ['formatDetails', 'feature'], { feature });
+                        const depth = (0, configuration_1.getConf)(track, ['formatDetails', 'depth']);
+                        formatSubfeatures(feature, depth, subfeature => {
+                            // eslint-disable-next-line no-underscore-dangle
+                            subfeature.__jbrowsefmt = (0, configuration_1.getConf)(track, ['formatDetails', 'subfeatures'], { feature: subfeature });
+                        });
+                    }
+                    self.setFormattedData(feature);
+                }
+            }));
+        },
+    }))
+        .preProcessSnapshot(snap => {
+        // @ts-ignore
+        const { featureData, finalizedFeatureData, ...rest } = snap;
+        return {
+            unformattedFeatureData: featureData,
+            featureData: finalizedFeatureData,
+            ...rest,
+        };
+    })
+        .postProcessSnapshot(snap => {
+        // xref https://github.com/mobxjs/mobx-state-tree/issues/1524 for Omit
+        const { unformattedFeatureData, featureData, ...rest } = snap;
+        // finalizedFeatureData avoids running formatter twice if loading from
+        // snapshot
+        return {
+            // replacing undefined with null helps with allowing fields to be
+            // hidden, setting null is not allowed by jexl so we set it to
+            // undefined to hide. see config guide. this replacement happens both
+            // here and when displaying the featureData in base feature widget
+            finalizedFeatureData: JSON.parse(JSON.stringify(featureData, (_, v) => typeof v === 'undefined' ? null : v)),
+            ...rest,
+        };
+    });
+}
+exports.default = stateModelFactory;
+exports.stateModelFactory = stateModelFactory;

package/BaseFeatureWidget/types.d.ts

@@ -4,6 +4,7 @@ import { SimpleFeatureSerialized } from '../util/simpleFeature';
 import { AbstractViewModel } from '../util';
 export interface BaseProps extends BaseCardProps {
     feature: SimpleFeatureSerialized;
+    formatter?: (val: unknown, key: string) => React.ReactNode;
     descriptions?: Record<string, React.ReactNode>;
     model?: IAnyStateTreeNode & {
         view?: AbstractViewModel & {

package/BaseFeatureWidget/types.js

@@ -1,5 +1,2 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
+Object.defineProperty(exports, "__esModule", { value: true });

package/BaseFeatureWidget/util.js

@@ -1,84 +1,49 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.calculateUTRs = calculateUTRs;
-exports.dedupe = dedupe;
-exports.ellipses = ellipses;
-exports.revlist = revlist;
-exports.stitch = stitch;
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ellipses = exports.calculateUTRs = exports.revlist = exports.dedupe = exports.stitch = void 0;
 function stitch(subfeats, sequence) {
-  return subfeats.map(function (sub) {
-    return sequence.slice(sub.start, sub.end);
-  }).join('');
-} // filter items if they have the same "ID" or location
-
-
+    return subfeats.map(sub => sequence.slice(sub.start, sub.end)).join('');
+}
+exports.stitch = stitch;
+// filter items if they have the same "ID" or location
 function getItemId(feat) {
-  return "".concat(feat.start, "-").concat(feat.end);
-} // filters if successive elements share same start/end
-
-
+    return `${feat.start}-${feat.end}`;
+}
+// filters if successive elements share same start/end
 function dedupe(list) {
-  return list.filter(function (item, pos, ary) {
-    return !pos || getItemId(item) !== getItemId(ary[pos - 1]);
-  });
+    return list.filter((item, pos, ary) => !pos || getItemId(item) !== getItemId(ary[pos - 1]));
 }
-
+exports.dedupe = dedupe;
 function revlist(list, seqlen) {
-  return list.map(function (sub) {
-    return _objectSpread(_objectSpread({}, sub), {}, {
-      start: seqlen - sub.end,
-      end: seqlen - sub.start
-    });
-  }).sort(function (a, b) {
-    return a.start - b.start;
-  });
-} // calculates UTRs using impliedUTRs logic
-
-
+    return list
+        .map(sub => ({
+        ...sub,
+        start: seqlen - sub.end,
+        end: seqlen - sub.start,
+    }))
+        .sort((a, b) => a.start - b.start);
+}
+exports.revlist = revlist;
+// calculates UTRs using impliedUTRs logic
 function calculateUTRs(cds, exons) {
-  var firstCds = cds[0];
-  var lastCds = cds[cds.length - 1];
-  var firstCdsIdx = exons.findIndex(function (exon) {
-    return exon.end >= firstCds.start && exon.start <= firstCds.start;
-  });
-  var lastCdsIdx = exons.findIndex(function (exon) {
-    return exon.end >= lastCds.end && exon.start <= lastCds.end;
-  });
-  var lastCdsExon = exons[lastCdsIdx];
-  var firstCdsExon = exons[firstCdsIdx];
-  var fiveUTRs = [].concat((0, _toConsumableArray2.default)(exons.slice(0, firstCdsIdx)), [{
-    start: firstCdsExon.start,
-    end: firstCds.start
-  }]).map(function (elt) {
-    return _objectSpread(_objectSpread({}, elt), {}, {
-      type: 'five_prime_UTR'
-    });
-  });
-  var threeUTRs = [{
-    start: lastCds.end,
-    end: lastCdsExon.end
-  }].concat((0, _toConsumableArray2.default)(exons.slice(lastCdsIdx + 1))).map(function (elt) {
-    return _objectSpread(_objectSpread({}, elt), {}, {
-      type: 'three_prime_UTR'
-    });
-  });
-  return [].concat((0, _toConsumableArray2.default)(fiveUTRs), (0, _toConsumableArray2.default)(threeUTRs));
+    const firstCds = cds[0];
+    const lastCds = cds[cds.length - 1];
+    const firstCdsIdx = exons.findIndex(exon => exon.end >= firstCds.start && exon.start <= firstCds.start);
+    const lastCdsIdx = exons.findIndex(exon => exon.end >= lastCds.end && exon.start <= lastCds.end);
+    const lastCdsExon = exons[lastCdsIdx];
+    const firstCdsExon = exons[firstCdsIdx];
+    const fiveUTRs = [
+        ...exons.slice(0, firstCdsIdx),
+        { start: firstCdsExon.start, end: firstCds.start },
+    ].map(elt => ({ ...elt, type: 'five_prime_UTR' }));
+    const threeUTRs = [
+        { start: lastCds.end, end: lastCdsExon.end },
+        ...exons.slice(lastCdsIdx + 1),
+    ].map(elt => ({ ...elt, type: 'three_prime_UTR' }));
+    return [...fiveUTRs, ...threeUTRs];
 }
-
+exports.calculateUTRs = calculateUTRs;
 function ellipses(slug) {
-  return slug.length > 20 ? "".concat(slug.slice(0, 20), "...") : slug;
-}
+    return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug;
+}
+exports.ellipses = ellipses;

package/CorePlugin.js

@@ -1,103 +1,64 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = require("react");
-
-var _BaseFeatureWidget = require("./BaseFeatureWidget");
-
-var _Plugin2 = _interopRequireDefault(require("./Plugin"));
-
-var coreRpcMethods = _interopRequireWildcard(require("./rpc/coreRpcMethods"));
-
-var _AdapterType = _interopRequireDefault(require("./pluggableElementTypes/AdapterType"));
-
-var _WidgetType = _interopRequireDefault(require("./pluggableElementTypes/WidgetType"));
-
-var _CytobandAdapter = require("./data_adapters/CytobandAdapter");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = require("react");
+const BaseFeatureWidget_1 = require("./BaseFeatureWidget");
+const Plugin_1 = __importDefault(require("./Plugin"));
+const coreRpcMethods = __importStar(require("./rpc/coreRpcMethods"));
+const AdapterType_1 = __importDefault(require("./pluggableElementTypes/AdapterType"));
+const WidgetType_1 = __importDefault(require("./pluggableElementTypes/WidgetType"));
+const CytobandAdapter_1 = require("./data_adapters/CytobandAdapter");
 // the core plugin, which registers types that ALL JBrowse applications are
 // expected to need.
-var CorePlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2.default)(CorePlugin, _Plugin);
-
-  var _super = _createSuper(CorePlugin);
-
-  function CorePlugin() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, CorePlugin);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
+class CorePlugin extends Plugin_1.default {
+    constructor() {
+        super(...arguments);
+        this.name = 'CorePlugin';
     }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'CorePlugin');
-    return _this;
-  }
-
-  (0, _createClass2.default)(CorePlugin, [{
-    key: "install",
-    value: function install(pluginManager) {
-      // register all our core rpc methods
-      Object.values(coreRpcMethods).forEach(function (RpcMethod) {
-        pluginManager.addRpcMethod(function () {
-          return new RpcMethod(pluginManager);
-        });
-      });
-      pluginManager.addAdapterType(function () {
-        return new _AdapterType.default({
-          name: 'CytobandAdapter',
-          configSchema: _CytobandAdapter.configSchema,
-          AdapterClass: _CytobandAdapter.DataAdapter
+    install(pluginManager) {
+        // register all our core rpc methods
+        Object.values(coreRpcMethods).forEach(RpcMethod => {
+            pluginManager.addRpcMethod(() => new RpcMethod(pluginManager));
         });
-      });
-      pluginManager.addWidgetType(function () {
-        return new _WidgetType.default({
-          name: 'BaseFeatureWidget',
-          heading: 'Feature details',
-          configSchema: _BaseFeatureWidget.configSchema,
-          stateModel: (0, _BaseFeatureWidget.stateModelFactory)(pluginManager),
-          ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
-            return Promise.resolve().then(function () {
-              return _interopRequireWildcard(require('./BaseFeatureWidget/BaseFeatureDetail'));
+        pluginManager.addAdapterType(() => new AdapterType_1.default({
+            name: 'CytobandAdapter',
+            configSchema: CytobandAdapter_1.configSchema,
+            AdapterClass: CytobandAdapter_1.DataAdapter,
+        }));
+        pluginManager.addWidgetType(() => {
+            return new WidgetType_1.default({
+                name: 'BaseFeatureWidget',
+                heading: 'Feature details',
+                configSchema: BaseFeatureWidget_1.configSchema,
+                stateModel: (0, BaseFeatureWidget_1.stateModelFactory)(pluginManager),
+                ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./BaseFeatureWidget/BaseFeatureDetail')))),
             });
-          })
         });
-      });
     }
-  }]);
-  return CorePlugin;
-}(_Plugin2.default);
-
-exports.default = CorePlugin;
+}
+exports.default = CorePlugin;

package/Plugin.js

@@ -1,38 +1,13 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
+Object.defineProperty(exports, "__esModule", { value: true });
 /**
  * base class for a JBrowse plugin
  */
-var Plugin = /*#__PURE__*/function () {
-  function Plugin() {
-    (0, _classCallCheck2.default)(this, Plugin);
-    (0, _defineProperty2.default)(this, "name", void 0);
-    (0, _defineProperty2.default)(this, "url", void 0);
-    (0, _defineProperty2.default)(this, "version", void 0);
-    (0, _defineProperty2.default)(this, "configurationSchema", undefined);
-  }
-
-  (0, _createClass2.default)(Plugin, [{
-    key: "install",
-    value: function install(_pluginManager) {}
-  }, {
-    key: "configure",
-    value: function configure(_pluginManager) {}
-  }]);
-  return Plugin;
-}();
-
-exports.default = Plugin;
+class Plugin {
+    constructor() {
+        this.configurationSchema = undefined;
+    }
+    install(_pluginManager) { }
+    configure(_pluginManager) { }
+}
+exports.default = Plugin;