@jbrowse/core 1.7.11 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail.d.ts +20 -4
- package/BaseFeatureWidget/BaseFeatureDetail.js +313 -558
- package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -473
- package/BaseFeatureWidget/index.d.ts +2 -2
- package/BaseFeatureWidget/index.js +88 -124
- package/BaseFeatureWidget/types.d.ts +1 -0
- package/BaseFeatureWidget/types.js +1 -4
- package/BaseFeatureWidget/util.js +40 -75
- package/CorePlugin.js +55 -94
- package/Plugin.js +9 -34
- package/PluginLoader.js +153 -422
- package/PluginManager.d.ts +84 -117
- package/PluginManager.js +377 -666
- package/ReExports/Attributes.d.ts +2 -0
- package/ReExports/Attributes.js +5 -0
- package/ReExports/BaseCard.d.ts +2 -0
- package/ReExports/BaseCard.js +5 -0
- package/ReExports/DataGrid.d.ts +2 -0
- package/ReExports/DataGrid.js +6 -0
- package/ReExports/FeatureDetails.d.ts +2 -0
- package/ReExports/FeatureDetails.js +5 -0
- package/ReExports/index.js +6 -12
- package/ReExports/list.d.ts +5 -0
- package/ReExports/list.js +271 -7
- package/ReExports/material-ui-colors.d.ts +1 -19
- package/ReExports/material-ui-colors.js +16 -158
- package/ReExports/modules.d.ts +68 -109
- package/ReExports/modules.js +455 -244
- package/TextSearch/BaseResults.js +51 -123
- package/TextSearch/TextSearchManager.d.ts +3 -1
- package/TextSearch/TextSearchManager.js +66 -144
- package/assemblyManager/assembly.js +280 -554
- package/assemblyManager/assemblyConfigSchema.js +47 -64
- package/assemblyManager/assemblyManager.d.ts +12 -10
- package/assemblyManager/assemblyManager.js +126 -270
- package/assemblyManager/index.js +9 -22
- package/configuration/configurationSchema.js +167 -203
- package/configuration/configurationSlot.js +248 -326
- package/configuration/index.js +19 -35
- package/configuration/util.d.ts +1 -1
- package/configuration/util.js +131 -173
- package/data_adapters/BaseAdapter.d.ts +2 -2
- package/data_adapters/BaseAdapter.js +132 -521
- package/data_adapters/CytobandAdapter.js +40 -126
- package/data_adapters/dataAdapterCache.js +77 -158
- package/package.json +16 -18
- package/pluggableElementTypes/AdapterType.js +24 -79
- package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
- package/pluggableElementTypes/ConnectionType.js +22 -65
- package/pluggableElementTypes/DisplayType.js +35 -82
- package/pluggableElementTypes/InternetAccountType.js +23 -64
- package/pluggableElementTypes/PluggableElementBase.js +8 -20
- package/pluggableElementTypes/RpcMethodType.js +85 -427
- package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
- package/pluggableElementTypes/TrackType.js +26 -70
- package/pluggableElementTypes/ViewType.js +21 -63
- package/pluggableElementTypes/WidgetType.js +21 -64
- package/pluggableElementTypes/index.d.ts +4 -3
- package/pluggableElementTypes/index.js +42 -125
- package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
- package/pluggableElementTypes/models/BaseDisplayModel.d.ts +10 -10
- package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
- package/pluggableElementTypes/models/BaseTrackModel.d.ts +1 -1
- package/pluggableElementTypes/models/BaseTrackModel.js +139 -200
- package/pluggableElementTypes/models/BaseViewModel.js +24 -40
- package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
- package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
- package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
- package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
- package/pluggableElementTypes/models/index.js +21 -70
- package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
- package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
- package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
- package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -255
- package/pluggableElementTypes/renderers/RendererType.js +31 -105
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
- package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +2 -2
- package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
- package/pluggableElementTypes/renderers/index.js +19 -62
- package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
- package/rpc/BaseRpcDriver.js +169 -405
- package/rpc/MainThreadRpcDriver.js +27 -150
- package/rpc/RpcManager.js +58 -159
- package/rpc/WebWorkerRpcDriver.js +54 -171
- package/rpc/configSchema.js +25 -49
- package/rpc/coreRpcMethods.d.ts +1 -3
- package/rpc/coreRpcMethods.js +221 -959
- package/rpc/remoteAbortSignals.js +46 -70
- package/tsconfig.build.tsbuildinfo +1 -1
- package/ui/AboutDialog.js +107 -158
- package/ui/App.js +157 -261
- package/ui/AssemblySelector.d.ts +1 -1
- package/ui/AssemblySelector.js +59 -115
- package/ui/CascadingMenu.js +100 -199
- package/ui/ColorPicker.d.ts +16 -0
- package/ui/ColorPicker.js +97 -0
- package/ui/Drawer.js +28 -58
- package/ui/DrawerWidget.js +109 -209
- package/ui/DropDownMenu.d.ts +0 -8
- package/ui/DropDownMenu.js +60 -97
- package/ui/EditableTypography.d.ts +1 -1
- package/ui/EditableTypography.js +87 -155
- package/ui/ErrorMessage.js +41 -66
- package/ui/FactoryResetDialog.js +24 -57
- package/ui/FatalErrorDialog.js +59 -91
- package/ui/FileSelector/FileSelector.js +123 -189
- package/ui/FileSelector/LocalFileChooser.js +44 -71
- package/ui/FileSelector/UrlChooser.js +17 -38
- package/ui/FileSelector/index.js +6 -12
- package/ui/Icons.d.ts +1 -1
- package/ui/Icons.js +45 -69
- package/ui/Logo.js +57 -110
- package/ui/Menu.d.ts +1 -1
- package/ui/Menu.js +232 -355
- package/ui/PrerenderedCanvas.js +63 -78
- package/ui/ResizeHandle.js +87 -114
- package/ui/ReturnToImportFormDialog.js +32 -59
- package/ui/SanitizedHTML.js +63 -52
- package/ui/Snackbar.js +74 -99
- package/ui/SnackbarModel.js +37 -51
- package/ui/Tooltip.d.ts +3 -1
- package/ui/Tooltip.js +49 -74
- package/ui/ViewContainer.js +113 -183
- package/ui/colors.d.ts +10 -0
- package/ui/colors.js +78 -0
- package/ui/index.js +51 -181
- package/ui/react-colorful.d.ts +17 -0
- package/ui/react-colorful.js +455 -0
- package/ui/theme.d.ts +279 -131
- package/ui/theme.js +197 -225
- package/util/Base1DUtils.d.ts +32 -0
- package/util/Base1DUtils.js +174 -0
- package/util/Base1DViewModel.d.ts +16 -37
- package/util/Base1DViewModel.js +116 -295
- package/util/QuickLRU.js +84 -332
- package/util/TimeTraveller.d.ts +19 -0
- package/util/TimeTraveller.js +86 -0
- package/util/aborting.js +49 -127
- package/util/analytics.js +91 -154
- package/util/blockTypes.js +106 -240
- package/util/calculateDynamicBlocks.js +98 -128
- package/util/calculateStaticBlocks.js +105 -125
- package/util/color/cssColorsLevel4.js +156 -160
- package/util/color/index.js +33 -55
- package/util/compositeMap.js +49 -333
- package/util/formatFastaStrings.js +9 -14
- package/util/idMaker.js +18 -31
- package/util/index.d.ts +18 -39
- package/util/index.js +743 -1236
- package/util/io/RemoteFileWithRangeCache.js +88 -257
- package/util/io/index.js +95 -169
- package/util/jexl.js +60 -115
- package/util/jexlStrings.js +24 -29
- package/util/layouts/BaseLayout.js +1 -4
- package/util/layouts/GranularRectLayout.js +388 -557
- package/util/layouts/MultiLayout.js +41 -109
- package/util/layouts/PrecomputedLayout.js +56 -114
- package/util/layouts/PrecomputedMultiLayout.js +22 -59
- package/util/layouts/SceneGraph.js +127 -197
- package/util/layouts/index.js +29 -66
- package/util/mst-reflection.js +55 -71
- package/util/offscreenCanvasPonyfill.js +66 -134
- package/util/offscreenCanvasUtils.d.ts +2 -7
- package/util/offscreenCanvasUtils.js +49 -146
- package/util/range.js +29 -40
- package/util/rxjs.js +20 -27
- package/util/simpleFeature.js +88 -152
- package/util/stats.js +91 -151
- package/util/tracks.js +130 -171
- package/util/types/index.d.ts +3 -3
- package/util/types/index.js +110 -179
- package/util/types/mst.d.ts +3 -3
- package/util/types/mst.js +91 -142
- package/util/types/util.js +1 -4
- package/util/when.js +54 -101
- package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
- package/BaseFeatureWidget/index.test.js +0 -51
- package/TextSearch/BaseResults.test.js +0 -42
- package/configuration/configurationSchema.test.js +0 -266
- package/configuration/configurationSlot.test.js +0 -69
- package/configuration/util.test.js +0 -39
- package/data_adapters/BaseAdapter.test.js +0 -200
- package/declare.d.js +0 -1
- package/pluggableElementTypes/RpcMethodType.test.js +0 -118
- package/pluggableElementTypes/renderers/declare.d.js +0 -1
- package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
- package/rpc/BaseRpcDriver.test.js +0 -540
- package/rpc/declaration.d.js +0 -1
- package/ui/FatalErrorDialog.test.js +0 -82
- package/ui/SanitizedHTML.test.js +0 -36
- package/ui/theme.test.js +0 -111
- package/util/Base1DViewModel.test.js +0 -130
- package/util/calculateDynamicBlocks.test.js +0 -74
- package/util/calculateStaticBlocks.test.js +0 -297
- package/util/declare.d.js +0 -1
- package/util/formatFastaStrings.test.js +0 -40
- package/util/index.test.js +0 -213
- package/util/jexlStrings.test.js +0 -48
- package/util/layouts/GranularRectLayout.test.js +0 -99
- package/util/range.test.js +0 -64
- package/util/simpleFeature.test.js +0 -34
- package/util/stats.test.js +0 -172
package/PluginManager.d.ts
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/// <reference types="react" />
|
|
2
|
-
import { IAnyType } from 'mobx-state-tree';
|
|
2
|
+
import { IAnyType, IAnyModelType } from 'mobx-state-tree';
|
|
3
3
|
import PluggableElementBase from './pluggableElementTypes/PluggableElementBase';
|
|
4
4
|
import RendererType from './pluggableElementTypes/renderers/RendererType';
|
|
5
5
|
import AdapterType from './pluggableElementTypes/AdapterType';
|
|
@@ -11,6 +11,7 @@ import ConnectionType from './pluggableElementTypes/ConnectionType';
|
|
|
11
11
|
import RpcMethodType from './pluggableElementTypes/RpcMethodType';
|
|
12
12
|
import InternetAccountType from './pluggableElementTypes/InternetAccountType';
|
|
13
13
|
import TextSearchAdapterType from './pluggableElementTypes/TextSearchAdapterType';
|
|
14
|
+
import AddTrackWorkflowType from './pluggableElementTypes/AddTrackWorkflowType';
|
|
14
15
|
import Plugin from './Plugin';
|
|
15
16
|
import ReExports from './ReExports';
|
|
16
17
|
import { PluggableElementType, PluggableElementMember } from './pluggableElementTypes';
|
|
@@ -25,7 +26,7 @@ declare class PhasedScheduler<PhaseName extends string> {
|
|
|
25
26
|
add(phase: PhaseName, callback: Function): void;
|
|
26
27
|
run(): void;
|
|
27
28
|
}
|
|
28
|
-
declare type PluggableElementTypeGroup = 'renderer' | 'adapter' | 'display' | 'track' | 'connection' | 'view' | 'widget' | 'rpc method' | 'internet account' | 'text search adapter';
|
|
29
|
+
declare type PluggableElementTypeGroup = 'renderer' | 'adapter' | 'display' | 'track' | 'connection' | 'view' | 'widget' | 'rpc method' | 'internet account' | 'text search adapter' | 'add track workflow';
|
|
29
30
|
/** internal class that holds the info for a certain element type */
|
|
30
31
|
declare class TypeRecord<ElementClass extends PluggableElementBase> {
|
|
31
32
|
typeName: string;
|
|
@@ -78,6 +79,7 @@ export default class PluginManager {
|
|
|
78
79
|
viewTypes: TypeRecord<ViewType>;
|
|
79
80
|
widgetTypes: TypeRecord<WidgetType>;
|
|
80
81
|
rpcMethods: TypeRecord<RpcMethodType>;
|
|
82
|
+
addTrackWidgets: TypeRecord<AddTrackWorkflowType>;
|
|
81
83
|
internetAccountTypes: TypeRecord<InternetAccountType>;
|
|
82
84
|
configured: boolean;
|
|
83
85
|
rootModel?: AbstractRootModel;
|
|
@@ -97,93 +99,21 @@ export default class PluginManager {
|
|
|
97
99
|
getElementType(groupName: PluggableElementTypeGroup, typeName: string): PluggableElementBase;
|
|
98
100
|
getElementTypesInGroup(groupName: PluggableElementTypeGroup): PluggableElementBase[];
|
|
99
101
|
/** get a MST type for the union of all specified pluggable MST types */
|
|
100
|
-
pluggableMstType(
|
|
102
|
+
pluggableMstType(groupName: PluggableElementTypeGroup, fieldName: PluggableElementMember, fallback?: IAnyType): IAnyType;
|
|
101
103
|
/** get a MST type for the union of all specified pluggable config schemas */
|
|
102
|
-
pluggableConfigSchemaType(typeGroup: PluggableElementTypeGroup, fieldName?: PluggableElementMember):
|
|
104
|
+
pluggableConfigSchemaType(typeGroup: PluggableElementTypeGroup, fieldName?: PluggableElementMember): IAnyModelType;
|
|
103
105
|
jbrequireCache: Map<any, any>;
|
|
104
106
|
lib: {
|
|
105
|
-
|
|
106
|
-
'
|
|
107
|
-
|
|
108
|
-
'
|
|
109
|
-
'
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
'@mui/x-data-grid': typeof import("@mui/x-data-grid");
|
|
116
|
-
'@material-ui/data-grid': typeof import("@mui/x-data-grid");
|
|
117
|
-
'@material-ui/core/colors': typeof import("./ReExports/material-ui-colors");
|
|
118
|
-
'@material-ui/core/styles': typeof import("@material-ui/core/styles");
|
|
119
|
-
'@material-ui/core/Box': import("react").ComponentType<import("@material-ui/core").BoxProps>;
|
|
120
|
-
'@material-ui/core/Button': import("@material-ui/core").ExtendButtonBase<import("@material-ui/core").ButtonTypeMap<{}, "button">>;
|
|
121
|
-
'@material-ui/core/ButtonGroup': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").ButtonGroupTypeMap<{}, "div">>;
|
|
122
|
-
'@material-ui/core/Card': typeof import("@material-ui/core").Card;
|
|
123
|
-
'@material-ui/core/CardContent': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").CardContentTypeMap<{}, "div">>;
|
|
124
|
-
'@material-ui/core/Container': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").ContainerTypeMap<{}, "div">>;
|
|
125
|
-
'@material-ui/core/Checkbox': typeof import("@material-ui/core").Checkbox;
|
|
126
|
-
'@material-ui/core/Dialog': typeof import("@material-ui/core").Dialog;
|
|
127
|
-
'@material-ui/core/FormGroup': typeof import("@material-ui/core").FormGroup;
|
|
128
|
-
'@material-ui/core/FormLabel': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").FormLabelTypeMap<{}, "label">>;
|
|
129
|
-
'@material-ui/core/FormControl': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").FormControlTypeMap<{}, "div">>;
|
|
130
|
-
'@material-ui/core/FormControlLabel': typeof import("@material-ui/core").FormControlLabel;
|
|
131
|
-
'@material-ui/core/Grid': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").GridTypeMap<{}, "div">>;
|
|
132
|
-
'@material-ui/core/Icon': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").IconTypeMap<{}, "span">>;
|
|
133
|
-
'@material-ui/core/IconButton': import("@material-ui/core").ExtendButtonBase<import("@material-ui/core").IconButtonTypeMap<{}, "button">>;
|
|
134
|
-
'@material-ui/core/InputAdornment': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").InputAdornmentTypeMap<{}, "div">>;
|
|
135
|
-
'@material-ui/core/LinearProgress': typeof import("@material-ui/core").LinearProgress;
|
|
136
|
-
'@material-ui/core/ListItemIcon': typeof import("@material-ui/core").ListItemIcon;
|
|
137
|
-
'@material-ui/core/ListItemText': typeof import("@material-ui/core").ListItemText;
|
|
138
|
-
'@material-ui/core/Menu': typeof import("@material-ui/core").Menu;
|
|
139
|
-
'@material-ui/core/MenuItem': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").MenuItemTypeMap<{
|
|
140
|
-
button: false;
|
|
141
|
-
}, "li">> & ((props: {
|
|
142
|
-
href: string;
|
|
143
|
-
} & {
|
|
144
|
-
button?: true | undefined;
|
|
145
|
-
} & {
|
|
146
|
-
alignItems?: "center" | "flex-start" | undefined;
|
|
147
|
-
autoFocus?: boolean | undefined;
|
|
148
|
-
button?: boolean | undefined;
|
|
149
|
-
ContainerComponent?: import("react").ElementType<import("react").HTMLAttributes<HTMLDivElement>> | undefined;
|
|
150
|
-
ContainerProps?: import("react").HTMLAttributes<HTMLDivElement> | undefined;
|
|
151
|
-
dense?: boolean | undefined;
|
|
152
|
-
disabled?: boolean | undefined;
|
|
153
|
-
disableGutters?: boolean | undefined;
|
|
154
|
-
divider?: boolean | undefined;
|
|
155
|
-
focusVisibleClassName?: string | undefined;
|
|
156
|
-
selected?: boolean | undefined;
|
|
157
|
-
} & {
|
|
158
|
-
action?: import("react").Ref<import("@material-ui/core").ButtonBaseActions> | undefined;
|
|
159
|
-
buttonRef?: import("react").Ref<unknown> | undefined;
|
|
160
|
-
centerRipple?: boolean | undefined;
|
|
161
|
-
children?: import("react").ReactNode;
|
|
162
|
-
disabled?: boolean | undefined;
|
|
163
|
-
disableRipple?: boolean | undefined;
|
|
164
|
-
disableTouchRipple?: boolean | undefined;
|
|
165
|
-
focusRipple?: boolean | undefined;
|
|
166
|
-
focusVisibleClassName?: string | undefined;
|
|
167
|
-
onFocusVisible?: import("react").FocusEventHandler<any> | undefined;
|
|
168
|
-
tabIndex?: string | number | undefined;
|
|
169
|
-
TouchRippleProps?: Partial<import("@material-ui/core/ButtonBase/TouchRipple").TouchRippleProps> | undefined;
|
|
170
|
-
} & import("@material-ui/core/OverridableComponent").CommonProps<import("@material-ui/core").ExtendButtonBaseTypeMap<import("@material-ui/core").MenuItemTypeMap<{
|
|
171
|
-
button?: true | undefined;
|
|
172
|
-
}, "li">>> & Pick<Pick<import("react").DetailedHTMLProps<import("react").AnchorHTMLAttributes<HTMLAnchorElement>, HTMLAnchorElement>, "key" | keyof import("react").AnchorHTMLAttributes<HTMLAnchorElement>> & {
|
|
173
|
-
ref?: ((instance: HTMLAnchorElement | null) => void) | import("react").RefObject<HTMLAnchorElement> | null | undefined;
|
|
174
|
-
}, "id" | "is" | "color" | "type" | "defaultValue" | "key" | "prefix" | "defaultChecked" | "suppressContentEditableWarning" | "suppressHydrationWarning" | "accessKey" | "contentEditable" | "contextMenu" | "dir" | "draggable" | "hidden" | "lang" | "placeholder" | "slot" | "spellCheck" | "tabIndex" | "title" | "translate" | "radioGroup" | "role" | "about" | "datatype" | "inlist" | "property" | "resource" | "typeof" | "vocab" | "autoCapitalize" | "autoCorrect" | "autoSave" | "itemProp" | "itemScope" | "itemType" | "itemID" | "itemRef" | "results" | "security" | "unselectable" | "inputMode" | "aria-activedescendant" | "aria-atomic" | "aria-autocomplete" | "aria-busy" | "aria-checked" | "aria-colcount" | "aria-colindex" | "aria-colspan" | "aria-controls" | "aria-current" | "aria-describedby" | "aria-details" | "aria-disabled" | "aria-dropeffect" | "aria-errormessage" | "aria-expanded" | "aria-flowto" | "aria-grabbed" | "aria-haspopup" | "aria-hidden" | "aria-invalid" | "aria-keyshortcuts" | "aria-label" | "aria-labelledby" | "aria-level" | "aria-live" | "aria-modal" | "aria-multiline" | "aria-multiselectable" | "aria-orientation" | "aria-owns" | "aria-placeholder" | "aria-posinset" | "aria-pressed" | "aria-readonly" | "aria-relevant" | "aria-required" | "aria-roledescription" | "aria-rowcount" | "aria-rowindex" | "aria-rowspan" | "aria-selected" | "aria-setsize" | "aria-sort" | "aria-valuemax" | "aria-valuemin" | "aria-valuenow" | "aria-valuetext" | "children" | "dangerouslySetInnerHTML" | "onCopy" | "onCopyCapture" | "onCut" | "onCutCapture" | "onPaste" | "onPasteCapture" | "onCompositionEnd" | "onCompositionEndCapture" | "onCompositionStart" | "onCompositionStartCapture" | "onCompositionUpdate" | "onCompositionUpdateCapture" | "onFocus" | "onFocusCapture" | "onBlur" | "onBlurCapture" | "onChange" | "onChangeCapture" | "onBeforeInput" | "onBeforeInputCapture" | "onInput" | "onInputCapture" | "onReset" | "onResetCapture" | "onSubmit" | "onSubmitCapture" | "onInvalid" | "onInvalidCapture" | "onLoad" | "onLoadCapture" | "onError" | "onErrorCapture" | "onKeyDown" | "onKeyDownCapture" | "onKeyPress" | "onKeyPressCapture" | "onKeyUp" | "onKeyUpCapture" | "onAbort" | "onAbortCapture" | "onCanPlay" | "onCanPlayCapture" | "onCanPlayThrough" | "onCanPlayThroughCapture" | "onDurationChange" | "onDurationChangeCapture" | "onEmptied" | "onEmptiedCapture" | "onEncrypted" | "onEncryptedCapture" | "onEnded" | "onEndedCapture" | "onLoadedData" | "onLoadedDataCapture" | "onLoadedMetadata" | "onLoadedMetadataCapture" | "onLoadStart" | "onLoadStartCapture" | "onPause" | "onPauseCapture" | "onPlay" | "onPlayCapture" | "onPlaying" | "onPlayingCapture" | "onProgress" | "onProgressCapture" | "onRateChange" | "onRateChangeCapture" | "onSeeked" | "onSeekedCapture" | "onSeeking" | "onSeekingCapture" | "onStalled" | "onStalledCapture" | "onSuspend" | "onSuspendCapture" | "onTimeUpdate" | "onTimeUpdateCapture" | "onVolumeChange" | "onVolumeChangeCapture" | "onWaiting" | "onWaitingCapture" | "onAuxClick" | "onAuxClickCapture" | "onClick" | "onClickCapture" | "onContextMenu" | "onContextMenuCapture" | "onDoubleClick" | "onDoubleClickCapture" | "onDrag" | "onDragCapture" | "onDragEnd" | "onDragEndCapture" | "onDragEnter" | "onDragEnterCapture" | "onDragExit" | "onDragExitCapture" | "onDragLeave" | "onDragLeaveCapture" | "onDragOver" | "onDragOverCapture" | "onDragStart" | "onDragStartCapture" | "onDrop" | "onDropCapture" | "onMouseDown" | "onMouseDownCapture" | "onMouseEnter" | "onMouseLeave" | "onMouseMove" | "onMouseMoveCapture" | "onMouseOut" | "onMouseOutCapture" | "onMouseOver" | "onMouseOverCapture" | "onMouseUp" | "onMouseUpCapture" | "onSelect" | "onSelectCapture" | "onTouchCancel" | "onTouchCancelCapture" | "onTouchEnd" | "onTouchEndCapture" | "onTouchMove" | "onTouchMoveCapture" | "onTouchStart" | "onTouchStartCapture" | "onPointerDown" | "onPointerDownCapture" | "onPointerMove" | "onPointerMoveCapture" | "onPointerUp" | "onPointerUpCapture" | "onPointerCancel" | "onPointerCancelCapture" | "onPointerEnter" | "onPointerEnterCapture" | "onPointerLeave" | "onPointerLeaveCapture" | "onPointerOver" | "onPointerOverCapture" | "onPointerOut" | "onPointerOutCapture" | "onGotPointerCapture" | "onGotPointerCaptureCapture" | "onLostPointerCapture" | "onLostPointerCaptureCapture" | "onScroll" | "onScrollCapture" | "onWheel" | "onWheelCapture" | "onAnimationStart" | "onAnimationStartCapture" | "onAnimationEnd" | "onAnimationEndCapture" | "onAnimationIteration" | "onAnimationIterationCapture" | "onTransitionEnd" | "onTransitionEndCapture" | "ref" | "href" | "download" | "hrefLang" | "media" | "ping" | "rel" | "target" | "referrerPolicy">) => JSX.Element) & import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").ExtendButtonBaseTypeMap<import("@material-ui/core").MenuItemTypeMap<{
|
|
175
|
-
button?: true | undefined;
|
|
176
|
-
}, "li">>>;
|
|
177
|
-
'@material-ui/core/RadioGroup': typeof import("@material-ui/core").RadioGroup;
|
|
178
|
-
'@material-ui/core/Radio': typeof import("@material-ui/core").Radio;
|
|
179
|
-
'@material-ui/core/Select': typeof import("@material-ui/core").Select;
|
|
180
|
-
'@material-ui/core/Snackbar': typeof import("@material-ui/core").Snackbar;
|
|
181
|
-
'@material-ui/core/SnackbarContent': typeof import("@material-ui/core").SnackbarContent;
|
|
182
|
-
'@material-ui/core/TextField': typeof import("@material-ui/core").TextField;
|
|
183
|
-
'@material-ui/core/Tooltip': typeof import("@material-ui/core").Tooltip;
|
|
184
|
-
'@material-ui/core/Typography': import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").TypographyTypeMap<{}, "span">>;
|
|
185
|
-
'@material-ui/lab/ToggleButton': import("@material-ui/core").ExtendButtonBase<import("@material-ui/lab").ToggleButtonTypeMap<{}, "button">>;
|
|
186
|
-
'@material-ui/lab/ToggleButtonGroup': typeof import("@material-ui/lab").ToggleButtonGroup;
|
|
107
|
+
'@material-ui/lab/ToggleButton': import("react").LazyExoticComponent<import("@mui/material").ExtendButtonBase<import("@mui/material").ToggleButtonTypeMap<{}, "button">>>;
|
|
108
|
+
'@material-ui/lab/ToggleButtonGroup': import("react").LazyExoticComponent<typeof import("@mui/material").ToggleButtonGroup>;
|
|
109
|
+
'@material-ui/lab/Autocomplete': import("react").LazyExoticComponent<typeof import("@mui/material").Autocomplete>;
|
|
110
|
+
'@material-ui/lab/Alert': import("react").LazyExoticComponent<typeof import("@mui/material").Alert>;
|
|
111
|
+
'@material-ui/lab': {
|
|
112
|
+
Alert: import("react").LazyExoticComponent<typeof import("@mui/material").Alert>;
|
|
113
|
+
Autocomplete: import("react").LazyExoticComponent<typeof import("@mui/material").Autocomplete>;
|
|
114
|
+
ToggleButton: import("react").LazyExoticComponent<import("@mui/material").ExtendButtonBase<import("@mui/material").ToggleButtonTypeMap<{}, "button">>>;
|
|
115
|
+
ToggleButtonGroup: import("react").LazyExoticComponent<typeof import("@mui/material").ToggleButtonGroup>;
|
|
116
|
+
};
|
|
187
117
|
'@jbrowse/core/Plugin': typeof Plugin;
|
|
188
118
|
'@jbrowse/core/pluggableElementTypes': typeof import("./pluggableElementTypes");
|
|
189
119
|
'@jbrowse/core/pluggableElementTypes/ViewType': typeof ViewType;
|
|
@@ -234,30 +164,22 @@ export default class PluginManager {
|
|
|
234
164
|
readonly maxOffset: number;
|
|
235
165
|
readonly minOffset: number;
|
|
236
166
|
readonly totalBp: number;
|
|
167
|
+
} & {
|
|
168
|
+
readonly dynamicBlocks: import("./util/blockTypes").BlockSet;
|
|
169
|
+
readonly staticBlocks: import("./util/blockTypes").BlockSet;
|
|
170
|
+
readonly currBp: number;
|
|
171
|
+
} & {
|
|
237
172
|
pxToBp(px: number): {
|
|
238
|
-
oob: boolean;
|
|
239
|
-
coord: number;
|
|
240
|
-
offset: number;
|
|
241
|
-
index: number;
|
|
242
|
-
refName: string;
|
|
243
|
-
start: number;
|
|
244
|
-
end: number;
|
|
245
|
-
reversed: boolean;
|
|
246
|
-
assemblyName: string;
|
|
247
|
-
} | {
|
|
248
173
|
coord: number;
|
|
249
174
|
index: number;
|
|
250
|
-
start: number;
|
|
251
175
|
refName: string;
|
|
252
176
|
oob: boolean;
|
|
253
177
|
assemblyName: string;
|
|
254
178
|
offset: number;
|
|
179
|
+
start: number;
|
|
180
|
+
end: number;
|
|
255
181
|
reversed: boolean;
|
|
256
182
|
};
|
|
257
|
-
} & {
|
|
258
|
-
readonly dynamicBlocks: import("./util/blockTypes").BlockSet;
|
|
259
|
-
readonly staticBlocks: import("./util/blockTypes").BlockSet;
|
|
260
|
-
readonly currBp: number;
|
|
261
183
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
262
184
|
refName: string;
|
|
263
185
|
coord: number;
|
|
@@ -265,21 +187,64 @@ export default class PluginManager {
|
|
|
265
187
|
}): number | undefined;
|
|
266
188
|
} & {
|
|
267
189
|
setFeatures(features: import("./util").Feature[]): void;
|
|
268
|
-
zoomToDisplayedRegions(leftPx: import("./util/Base1DViewModel").BpOffset | undefined, rightPx: import("./util/Base1DViewModel").BpOffset | undefined): void;
|
|
269
190
|
showAllRegions(): void;
|
|
270
|
-
moveTo(start: import("./util/Base1DViewModel").BpOffset, end: import("./util/Base1DViewModel").BpOffset): void;
|
|
271
191
|
zoomOut(): void;
|
|
272
192
|
zoomIn(): void;
|
|
273
|
-
zoomTo(newBpPerPx: number, offset?: number):
|
|
193
|
+
zoomTo(newBpPerPx: number, offset?: number): number;
|
|
274
194
|
scrollTo(offsetPx: number): number;
|
|
275
|
-
centerAt(
|
|
195
|
+
centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
|
|
276
196
|
scroll(distance: number): number;
|
|
197
|
+
} & {
|
|
198
|
+
moveTo(start?: import("./util/Base1DUtils").BpOffset | undefined, end?: import("./util/Base1DUtils").BpOffset | undefined): void;
|
|
277
199
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
278
200
|
'@jbrowse/core/util/io': typeof import("./util/io");
|
|
279
201
|
'@jbrowse/core/util/mst-reflection': typeof import("./util/mst-reflection");
|
|
280
202
|
'@jbrowse/core/util/rxjs': typeof import("./util/rxjs");
|
|
281
|
-
'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail':
|
|
203
|
+
'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': {
|
|
204
|
+
Attributes: (props: any) => JSX.Element;
|
|
205
|
+
FeatureDetails: (props: any) => JSX.Element;
|
|
206
|
+
BaseCard: (props: any) => JSX.Element;
|
|
207
|
+
};
|
|
282
208
|
'@jbrowse/core/data_adapters/BaseAdapter': typeof import("./data_adapters/BaseAdapter");
|
|
209
|
+
mobx: typeof import("mobx");
|
|
210
|
+
'mobx-state-tree': typeof import("mobx-state-tree");
|
|
211
|
+
react: typeof import("react");
|
|
212
|
+
'react-dom': typeof import("react-dom");
|
|
213
|
+
'mobx-react': typeof import("mobx-react");
|
|
214
|
+
'@mui/x-data-grid': {
|
|
215
|
+
useGridApiContext: typeof import("@mui/x-data-grid").useGridApiContext;
|
|
216
|
+
useGridApiRef: <Api extends import("@mui/x-data-grid").GridApiCommon = import("@mui/x-data-grid/models/api/gridApiCommunity").GridApiCommunity>() => import("react").MutableRefObject<Api>;
|
|
217
|
+
useGridRootProps: () => import("@mui/x-data-grid/models/props/DataGridProps").DataGridProcessedProps<any>;
|
|
218
|
+
};
|
|
219
|
+
'@mui/material/utils': typeof import("@mui/material/utils");
|
|
220
|
+
'@material-ui/core/utils': typeof import("@mui/material/utils");
|
|
221
|
+
'tss-react/mui': {
|
|
222
|
+
makeStyles: <Params = void, RuleNameSubsetReferencableInNestedSelectors extends string = never>(params?: {
|
|
223
|
+
name?: string | Record<string, unknown> | undefined;
|
|
224
|
+
uniqId?: string | undefined;
|
|
225
|
+
} | undefined) => <RuleName extends string>(cssObjectByRuleNameOrGetCssObjectByRuleName: Record<RuleName, import("tss-react/types").CSSObject> | ((theme: import("@mui/material").Theme, params: Params, classes: Record<RuleNameSubsetReferencableInNestedSelectors, string>) => Record<RuleNameSubsetReferencableInNestedSelectors | RuleName, import("tss-react/types").CSSObject>)) => (params: Params, styleOverrides?: {
|
|
226
|
+
props: {
|
|
227
|
+
classes?: Record<string, string> | undefined;
|
|
228
|
+
} & Record<string, unknown>;
|
|
229
|
+
ownerState?: Record<string, unknown> | undefined;
|
|
230
|
+
} | undefined) => {
|
|
231
|
+
classes: Record<RuleName, string>;
|
|
232
|
+
theme: import("@mui/material").Theme;
|
|
233
|
+
css: import("tss-react/types").Css;
|
|
234
|
+
cx: import("tss-react/types").Cx;
|
|
235
|
+
};
|
|
236
|
+
};
|
|
237
|
+
'@material-ui/core': {
|
|
238
|
+
useTheme: typeof import("@mui/material").useTheme;
|
|
239
|
+
alpha: typeof import("@mui/system").alpha;
|
|
240
|
+
makeStyles: (args: any) => () => Record<string, string>;
|
|
241
|
+
};
|
|
242
|
+
'@mui/material': {
|
|
243
|
+
[k: string]: (props: any) => JSX.Element;
|
|
244
|
+
};
|
|
245
|
+
'prop-types': typeof import("prop-types");
|
|
246
|
+
'@mui/material/styles': typeof import("@mui/material/styles");
|
|
247
|
+
'@material-ui/core/styles': typeof import("@mui/material/styles");
|
|
283
248
|
};
|
|
284
249
|
load: <FTYPE extends AnyFunction>(lib: FTYPE) => ReturnType<FTYPE>;
|
|
285
250
|
/**
|
|
@@ -298,20 +263,22 @@ export default class PluginManager {
|
|
|
298
263
|
getTrackType(typeName: string): TrackType;
|
|
299
264
|
getDisplayType(typeName: string): DisplayType;
|
|
300
265
|
getViewType(typeName: string): ViewType;
|
|
266
|
+
getAddTrackWorkflow(typeName: string): AddTrackWorkflowType;
|
|
301
267
|
getWidgetType(typeName: string): WidgetType;
|
|
302
268
|
getConnectionType(typeName: string): ConnectionType;
|
|
303
269
|
getRpcMethodType(methodName: string): RpcMethodType;
|
|
304
|
-
getInternetAccountType(
|
|
305
|
-
addRendererType(
|
|
306
|
-
addAdapterType(
|
|
307
|
-
addTextSearchAdapterType(
|
|
308
|
-
addTrackType(
|
|
309
|
-
addDisplayType(
|
|
310
|
-
addViewType(
|
|
311
|
-
addWidgetType(
|
|
312
|
-
addConnectionType(
|
|
313
|
-
addRpcMethod(
|
|
314
|
-
addInternetAccountType(
|
|
270
|
+
getInternetAccountType(name: string): InternetAccountType;
|
|
271
|
+
addRendererType(cb: (pm: PluginManager) => RendererType): this;
|
|
272
|
+
addAdapterType(cb: (pm: PluginManager) => AdapterType): this;
|
|
273
|
+
addTextSearchAdapterType(cb: (pm: PluginManager) => TextSearchAdapterType): this;
|
|
274
|
+
addTrackType(cb: (pm: PluginManager) => TrackType): this;
|
|
275
|
+
addDisplayType(cb: (pluginManager: PluginManager) => DisplayType): this;
|
|
276
|
+
addViewType(cb: (pluginManager: PluginManager) => ViewType): this;
|
|
277
|
+
addWidgetType(cb: (pm: PluginManager) => WidgetType): this;
|
|
278
|
+
addConnectionType(cb: (pm: PluginManager) => ConnectionType): this;
|
|
279
|
+
addRpcMethod(cb: (pm: PluginManager) => RpcMethodType): this;
|
|
280
|
+
addInternetAccountType(cb: (pm: PluginManager) => InternetAccountType): this;
|
|
281
|
+
addAddTrackWorkflowType(cb: (pm: PluginManager) => AddTrackWorkflowType): this;
|
|
315
282
|
addToExtensionPoint<T>(extensionPointName: string, callback: (extendee: T) => T): void;
|
|
316
283
|
evaluateExtensionPoint(extensionPointName: string, extendee: unknown): unknown;
|
|
317
284
|
evaluateAsyncExtensionPoint(extensionPointName: string, extendee: unknown): Promise<unknown>;
|