@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts

@@ -0,0 +1,245 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { Instance } from '@jbrowse/mobx-state-tree';
+export declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloReferenceSequenceDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    showStartCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showStopCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    highContrast: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    sequenceRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: import("../../session").ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
+} & {
+    readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
+    readonly height: number;
+} & {
+    scrollTop: number;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    toggleShowStartCodons(): void;
+    toggleShowStopCodons(): void;
+    toggleHighContrast(): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+    })[];
+} & {
+    afterAttach(): void;
+} & {
+    seqTrackCanvas: HTMLCanvasElement | null;
+    seqTrackOverlayCanvas: HTMLCanvasElement | null;
+    theme: import("@mui/material").Theme;
+} & {
+    setSeqTrackCanvas(canvas: HTMLCanvasElement | null): void;
+    setSeqTrackOverlayCanvas(canvas: HTMLCanvasElement | null): void;
+    setTheme(theme: import("@mui/material").Theme): void;
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export type LinearApolloReferenceSequenceDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export interface LinearApolloReferenceSequenceDisplay extends Instance<LinearApolloReferenceSequenceDisplayStateModel> {
+}
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,0BAA0B,CAAA;AAIxD,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAJD,0BAE3B,wBACX,0BAA0B;iBAG1B,0BAA0B;0BAE3B,0BAD0B,gBAAgB,0BAChC;;;;;;;;;;;;;;;;;;;mBASoD,wCAC1C;;;;mBAE+B,0BAC5C,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;0BAA8C,CAAC;kBAAgC,CAAC;;;;;;;mBAA0M,wCAAwC;;;;mBAAyJ,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;kBAAwK,0BAA0B,yBAAyB,0BAA0B;;;iCAAqG,oBAAqB;;;;;;;;;;;mBAAsU,wCAAwC;;;;;;;;;;2BAAqX,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yGAV98Q;AAED,MAAM,MAAM,8CAA8C,GAAG,UAAU,CACrE,OAAO,iBAAiB,CACzB,CAAA;AAID,MAAM,WAAW,oCACf,SAAQ,QAAQ,CAAC,8CAA8C,CAAC;CAAG"}

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts

@@ -0,0 +1,246 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { type Instance } from '@jbrowse/mobx-state-tree';
+import { type Theme } from '@mui/material';
+export declare function renderingModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloReferenceSequenceDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    showStartCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showStopCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    highContrast: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    sequenceRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: import("../../session").ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
+} & {
+    readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
+    readonly height: number;
+} & {
+    scrollTop: number;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    toggleShowStartCodons(): void;
+    toggleShowStopCodons(): void;
+    toggleHighContrast(): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+    })[];
+} & {
+    afterAttach(): void;
+} & {
+    seqTrackCanvas: HTMLCanvasElement | null;
+    seqTrackOverlayCanvas: HTMLCanvasElement | null;
+    theme: Theme;
+} & {
+    setSeqTrackCanvas(canvas: HTMLCanvasElement | null): void;
+    setSeqTrackOverlayCanvas(canvas: HTMLCanvasElement | null): void;
+    setTheme(theme: Theme): void;
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export type LinearApolloReferenceSequenceDisplayRenderingModel = ReturnType<typeof renderingModelFactory>;
+export interface LinearApolloReferenceSequenceDisplayRendering extends Instance<LinearApolloReferenceSequenceDisplayRenderingModel> {
+}
+//# sourceMappingURL=rendering.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"rendering.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,KAAK,QAAQ,EAAe,MAAM,0BAA0B,CAAA;AACrE,OAAO,EAAE,KAAK,KAAK,EAAe,MAAM,eAAe,CAAA;AAQvD,wBAAgB,qBAAqB,CACnC,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eAXR,0BAA0B,wBAC9C,0BAA0B;iBAGjC,0BAAyB;0BACZ,0BAA0B,gBAE1C,0BAA0B;;;;;;;;;;;;;;;;;;;mBAY1B,wCAAqC;;;;mBAIiB,0BACrC,wBAEZ,0BACA;uBAAsC,0BAClC,wBACP,0BACW;yBACL,0BAA0B;kCAG3B,0BAEV,gBAAgB,0BAEjB;;;;;kBAOgB,0BACL,yBACK,0BAAa;0BAEb,CAAP;kBACO,CAAC;;;;;;;mBASH,wCAA4B;;;;mBAS5B,0BAHe,wBAAwB,0BACjD;uBAAsC,0BAA0B,wBACnD,0BAAyB;yBAEnB,0BACN;kCAGD,0BAAU,gBACV,0BACT;;;;;kBAMa,0BAAyB,yBAAyB,0BAE/D;;;iCAKe,oBAAqB;;;;;;;;;;;mBASZ,wCAExB;;;;;;;;;;2BAeS,wCAGT;;;;2BAIyB,0BAA0B,wBAG5C,0BAFmB;+BAEnB,0BADe,wBACf,0BAAiB;iCAEJ,0BACV;0CAEA,0BACT,gBACQ,0BACd;;;;;0BAOU,0BACD,yBAGP,0BAGe;kCAAsD,CAAC;0BAGtE,CAAC;;;;;;;2BAIgB,wCAAwC;;;;2BAC+G,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;mBAA+K,0BAA0B,wBAAwB,0BAA0B;uBAAsC,0BAA0B,wBAAwB,0BAA0B;yBAA8D,0BAA0B;kCAAyD,0BAA0B,gBAAgB,0BAA0B;;;;;;;;;;;2BAAqY,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;kCAAsD,CAAC;0BAAwC,CAAC;;;;;;;2BAAkQ,wCAAwC;;;;2BAAyL,0BAA0B,wBAAwB,0BAA0B;+BAA8C,0BAA0B,wBAAwB,0BAA0B;iCAAsE,0BAA0B;0CAAiE,0BAA0B,gBAAgB,0BAA0B;;;;;0BAAgN,0BAA0B,yBAAyB,0BAA0B;;;yCAA6H,oBAAqB;;;;kBAA8K,0BAA0B,yBAAyB,0BAA0B;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oBApI1jJ,iBAAiB,GAAG,IAAI;2BACjB,iBAAiB,GAAG,IAAI;;;8BAI7B,iBAAiB,GAAG,IAAI;qCAGjB,iBAAiB,GAAG,IAAI;oBAGzC,KAAK;;yGA+G1B;AAED,MAAM,MAAM,kDAAkD,GAAG,UAAU,CACzE,OAAO,qBAAqB,CAC7B,CAAA;AAID,MAAM,WAAW,6CACf,SAAQ,QAAQ,CAAC,kDAAkD,CAAC;CAAG"}

package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts

@@ -0,0 +1,7 @@
+import type { LinearApolloSixFrameDisplay as LinearApolloSixFrameDisplayI } from '../stateModel';
+interface LinearApolloSixFrameDisplayProps {
+    model: LinearApolloSixFrameDisplayI;
+}
+export declare const LinearApolloSixFrameDisplay: (props: LinearApolloSixFrameDisplayProps, apolloDragging: any) => import("react/jsx-runtime").JSX.Element | null;
+export {};
+//# sourceMappingURL=LinearApolloSixFrameDisplay.d.ts.map

package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"LinearApolloSixFrameDisplay.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx"],"names":[],"mappings":"AAwBA,OAAO,KAAK,EAAE,2BAA2B,IAAI,4BAA4B,EAAE,MAAM,eAAe,CAAA;AAIhG,UAAU,gCAAgC;IACxC,KAAK,EAAE,4BAA4B,CAAA;CACpC;AAED,eAAO,MAAM,2BAA2B,UAE7B,gCAAgC,wEAsQ1C,CAAA"}

package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts

@@ -0,0 +1,8 @@
+import React from 'react';
+import type { LinearApolloSixFrameDisplay } from '../stateModel';
+export declare const TrackLines: ({ model, hrStyle, idx, }: {
+    model: LinearApolloSixFrameDisplay;
+    hrStyle?: React.CSSProperties;
+    idx: number;
+}) => import("react/jsx-runtime").JSX.Element;
+//# sourceMappingURL=TrackLines.d.ts.map

package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackLines.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/components/TrackLines.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,eAAe,CAAA;AAEhE,eAAO,MAAM,UAAU,6BAIpB;IACD,KAAK,EAAE,2BAA2B,CAAA;IAClC,OAAO,CAAC,EAAE,KAAK,CAAC,aAAa,CAAA;IAC7B,GAAG,EAAE,MAAM,CAAA;CACZ,4CAkBC,CAAA"}

package/dist/LinearApolloSixFrameDisplay/components/index.d.ts

@@ -0,0 +1,3 @@
+export * from './LinearApolloSixFrameDisplay';
+export * from './TrackLines';
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/components/index.ts"],"names":[],"mappings":"AAAA,cAAc,+BAA+B,CAAA;AAC7C,cAAc,cAAc,CAAA"}

package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts

@@ -0,0 +1,3 @@
+import type { Glyph } from './Glyph';
+export declare const geneGlyph: Glyph;
+//# sourceMappingURL=GeneGlyph.d.ts.map

package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"GeneGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts"],"names":[],"mappings":"AA0CA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AA28BpC,eAAO,MAAM,SAAS,EAAE,KAWvB,CAAA"}

package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts

@@ -0,0 +1,20 @@
+import type { AnnotationFeature } from '@apollo-annotation/mst';
+import type { MenuItem } from '@jbrowse/core/ui';
+import type { MousePositionWithFeature } from '../../util';
+import type { LinearApolloSixFrameDisplayMouseEvents } from '../stateModel/mouseEvents';
+import type { LinearApolloSixFrameDisplayRendering } from '../stateModel/rendering';
+import type { CanvasMouseEvent } from '../types';
+export interface Glyph {
+    /** draw the feature's primary rendering on the canvas */
+    draw(ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, stateModel: LinearApolloSixFrameDisplayRendering, displayedRegionIndex: number): void;
+    drawHover(display: LinearApolloSixFrameDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
+    drawDragPreview(display: LinearApolloSixFrameDisplayMouseEvents, ctx: CanvasRenderingContext2D): void;
+    onMouseDown(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
+    onMouseMove(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
+    onMouseLeave(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
+    onMouseUp(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
+    drawTooltip(display: LinearApolloSixFrameDisplayMouseEvents, context: CanvasRenderingContext2D): void;
+    getContextMenuItemsForFeature(display: LinearApolloSixFrameDisplayMouseEvents, sourceFeature: AnnotationFeature): MenuItem[];
+    getContextMenuItems(display: LinearApolloSixFrameDisplayMouseEvents, currentMousePosition: MousePositionWithFeature): MenuItem[];
+}
+//# sourceMappingURL=Glyph.d.ts.map

package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Glyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAEhD,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,YAAY,CAAA;AAC1D,OAAO,KAAK,EAAE,sCAAsC,EAAE,MAAM,2BAA2B,CAAA;AACvF,OAAO,KAAK,EAAE,oCAAoC,EAAE,MAAM,yBAAyB,CAAA;AACnF,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAA;AAEhD,MAAM,WAAW,KAAK;IACpB,yDAAyD;IACzD,IAAI,CACF,GAAG,EAAE,wBAAwB,EAC7B,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,oCAAoC,EAChD,oBAAoB,EAAE,MAAM,GAC3B,IAAI,CAAA;IAEP,SAAS,CACP,OAAO,EAAE,sCAAsC,EAC/C,UAAU,EAAE,wBAAwB,GACnC,IAAI,CAAA;IAEP,eAAe,CACb,OAAO,EAAE,sCAAsC,EAC/C,GAAG,EAAE,wBAAwB,GAC5B,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,sCAAsC,EAC/C,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,sCAAsC,EAC/C,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,YAAY,CACV,OAAO,EAAE,sCAAsC,EAC/C,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,SAAS,CACP,OAAO,EAAE,sCAAsC,EAC/C,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,sCAAsC,EAC/C,OAAO,EAAE,wBAAwB,GAChC,IAAI,CAAA;IAEP,6BAA6B,CAC3B,OAAO,EAAE,sCAAsC,EAC/C,aAAa,EAAE,iBAAiB,GAC/B,QAAQ,EAAE,CAAA;IAEb,mBAAmB,CACjB,OAAO,EAAE,sCAAsC,EAC/C,oBAAoB,EAAE,wBAAwB,GAC7C,QAAQ,EAAE,CAAA;CACd"}

package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts

@@ -0,0 +1,2 @@
+export * from './GeneGlyph';
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloSixFrameDisplay/glyphs/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAA"}

package/dist/LinearApolloSixFrameDisplay/index.d.ts

@@ -0,0 +1,3 @@
+export { configSchema } from './configSchema';
+export { stateModelFactory } from './stateModel';
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloSixFrameDisplay/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/LinearApolloSixFrameDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAA;AAC7C,OAAO,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA"}