@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (395) hide show
  1. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
  2. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
  3. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
  4. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
  5. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
  6. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
  7. package/dist/ApolloInternetAccount/index.d.ts +3 -0
  8. package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
  9. package/dist/ApolloJobModel.d.ts +53 -0
  10. package/dist/ApolloJobModel.d.ts.map +1 -0
  11. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
  12. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
  13. package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
  14. package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
  15. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
  16. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
  17. package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
  18. package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
  19. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
  20. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
  21. package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
  22. package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
  23. package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
  24. package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
  25. package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
  26. package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
  27. package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
  28. package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
  29. package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
  30. package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
  31. package/dist/BackendDrivers/index.d.ts +5 -0
  32. package/dist/BackendDrivers/index.d.ts.map +1 -0
  33. package/dist/ChangeManager.d.ts +24 -0
  34. package/dist/ChangeManager.d.ts.map +1 -0
  35. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
  36. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
  37. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
  38. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
  39. package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
  40. package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
  41. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
  42. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
  43. package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
  44. package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
  45. package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
  46. package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
  47. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
  48. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
  49. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
  50. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
  51. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
  52. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
  53. package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
  54. package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
  55. package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
  56. package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
  57. package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
  58. package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
  59. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
  60. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
  61. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
  62. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
  63. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
  64. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
  65. package/dist/FeatureDetailsWidget/index.d.ts +5 -0
  66. package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
  67. package/dist/FeatureDetailsWidget/model.d.ts +123 -0
  68. package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
  69. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
  70. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
  71. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
  72. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
  73. package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
  74. package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
  75. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
  76. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
  77. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
  78. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  79. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
  80. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
  81. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
  82. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
  83. package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
  84. package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
  85. package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
  86. package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
  87. package/dist/LinearApolloDisplay/index.d.ts +3 -0
  88. package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
  89. package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
  90. package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
  91. package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
  92. package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
  93. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
  94. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
  95. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
  96. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  97. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
  98. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
  99. package/dist/LinearApolloDisplay/types.d.ts +2 -0
  100. package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
  101. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
  102. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
  103. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
  104. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
  105. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
  106. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
  107. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
  108. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
  109. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
  110. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
  111. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
  112. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
  113. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
  114. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
  115. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
  116. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
  117. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
  118. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
  119. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
  120. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
  121. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
  122. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
  123. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
  124. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  125. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
  126. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
  127. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
  128. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
  129. package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
  130. package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
  131. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
  132. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
  133. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
  134. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
  135. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
  136. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
  137. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
  138. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  139. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
  140. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
  141. package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
  142. package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
  143. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
  144. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
  145. package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
  146. package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
  147. package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
  148. package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
  149. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
  150. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
  151. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
  152. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
  153. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
  154. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
  155. package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
  156. package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
  157. package/dist/OntologyManager/util.d.ts +4 -0
  158. package/dist/OntologyManager/util.d.ts.map +1 -0
  159. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
  160. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
  161. package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
  162. package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
  163. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
  164. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
  165. package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
  166. package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
  167. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
  168. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
  169. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
  170. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
  171. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
  172. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
  173. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
  174. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
  175. package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
  176. package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
  177. package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
  178. package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
  179. package/dist/TabularEditor/index.d.ts +3 -0
  180. package/dist/TabularEditor/index.d.ts.map +1 -0
  181. package/dist/TabularEditor/model.d.ts +17 -0
  182. package/dist/TabularEditor/model.d.ts.map +1 -0
  183. package/dist/TabularEditor/types.d.ts +4 -0
  184. package/dist/TabularEditor/types.d.ts.map +1 -0
  185. package/dist/components/AddAssembly.d.ts +10 -0
  186. package/dist/components/AddAssembly.d.ts.map +1 -0
  187. package/dist/components/AddAssemblyAliases.d.ts +10 -0
  188. package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
  189. package/dist/components/AddChildFeature.d.ts +13 -0
  190. package/dist/components/AddChildFeature.d.ts.map +1 -0
  191. package/dist/components/AddFeature.d.ts +12 -0
  192. package/dist/components/AddFeature.d.ts.map +1 -0
  193. package/dist/components/AddRefSeqAliases.d.ts +10 -0
  194. package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
  195. package/dist/components/CopyFeature.d.ts +13 -0
  196. package/dist/components/CopyFeature.d.ts.map +1 -0
  197. package/dist/components/CreateApolloAnnotation.d.ts +20 -0
  198. package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
  199. package/dist/components/DeleteAssembly.d.ts +10 -0
  200. package/dist/components/DeleteAssembly.d.ts.map +1 -0
  201. package/dist/components/DeleteFeature.d.ts +15 -0
  202. package/dist/components/DeleteFeature.d.ts.map +1 -0
  203. package/dist/components/Dialog.d.ts +7 -0
  204. package/dist/components/Dialog.d.ts.map +1 -0
  205. package/dist/components/DownloadGFF3.d.ts +8 -0
  206. package/dist/components/DownloadGFF3.d.ts.map +1 -0
  207. package/dist/components/DuplicateTranscript.d.ts +15 -0
  208. package/dist/components/DuplicateTranscript.d.ts.map +1 -0
  209. package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
  210. package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
  211. package/dist/components/FilterFeatures.d.ts +10 -0
  212. package/dist/components/FilterFeatures.d.ts.map +1 -0
  213. package/dist/components/FilterTranscripts.d.ts +10 -0
  214. package/dist/components/FilterTranscripts.d.ts.map +1 -0
  215. package/dist/components/ImportFeatures.d.ts +10 -0
  216. package/dist/components/ImportFeatures.d.ts.map +1 -0
  217. package/dist/components/LogOut.d.ts +8 -0
  218. package/dist/components/LogOut.d.ts.map +1 -0
  219. package/dist/components/ManageChecks.d.ts +8 -0
  220. package/dist/components/ManageChecks.d.ts.map +1 -0
  221. package/dist/components/ManageUsers.d.ts +10 -0
  222. package/dist/components/ManageUsers.d.ts.map +1 -0
  223. package/dist/components/MergeExons.d.ts +15 -0
  224. package/dist/components/MergeExons.d.ts.map +1 -0
  225. package/dist/components/MergeTranscripts.d.ts +15 -0
  226. package/dist/components/MergeTranscripts.d.ts.map +1 -0
  227. package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
  228. package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
  229. package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
  230. package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
  231. package/dist/components/OpenLocalFile.d.ts +15 -0
  232. package/dist/components/OpenLocalFile.d.ts.map +1 -0
  233. package/dist/components/SplitExon.d.ts +15 -0
  234. package/dist/components/SplitExon.d.ts.map +1 -0
  235. package/dist/components/ViewChangeLog.d.ts +8 -0
  236. package/dist/components/ViewChangeLog.d.ts.map +1 -0
  237. package/dist/components/ViewCheckResults.d.ts +8 -0
  238. package/dist/components/ViewCheckResults.d.ts.map +1 -0
  239. package/dist/components/index.d.ts +21 -0
  240. package/dist/components/index.d.ts.map +1 -0
  241. package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
  242. package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
  243. package/dist/extensions/annotationFromPileup.d.ts +3 -0
  244. package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
  245. package/dist/extensions/index.d.ts +3 -0
  246. package/dist/extensions/index.d.ts.map +1 -0
  247. package/dist/index.esm.js +843 -1330
  248. package/dist/index.esm.js.map +1 -1
  249. package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
  250. package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
  251. package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
  252. package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
  253. package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63619
  254. package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
  255. package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
  256. package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
  257. package/dist/makeDisplayComponent.d.ts +9 -0
  258. package/dist/makeDisplayComponent.d.ts.map +1 -0
  259. package/dist/menus/index.d.ts +2 -0
  260. package/dist/menus/index.d.ts.map +1 -0
  261. package/dist/menus/topLevelMenu.d.ts +3 -0
  262. package/dist/menus/topLevelMenu.d.ts.map +1 -0
  263. package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
  264. package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
  265. package/dist/session/index.d.ts +2 -0
  266. package/dist/session/index.d.ts.map +1 -0
  267. package/dist/types.d.ts +10 -0
  268. package/dist/types.d.ts.map +1 -0
  269. package/dist/util/annotationFeatureUtils.d.ts +7 -0
  270. package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
  271. package/dist/util/copyToClipboard.d.ts +2 -0
  272. package/dist/util/copyToClipboard.d.ts.map +1 -0
  273. package/dist/util/glyphUtils.d.ts +31 -0
  274. package/dist/util/glyphUtils.d.ts.map +1 -0
  275. package/dist/util/index.d.ts +10 -0
  276. package/dist/util/index.d.ts.map +1 -0
  277. package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
  278. package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
  279. package/dist/util/mouseEventsUtils.d.ts +25 -0
  280. package/dist/util/mouseEventsUtils.d.ts.map +1 -0
  281. package/package.json +48 -25
  282. package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
  283. package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
  284. package/src/ApolloInternetAccount/configSchema.ts +1 -1
  285. package/src/ApolloInternetAccount/model.ts +13 -6
  286. package/src/ApolloJobModel.ts +3 -3
  287. package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
  288. package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
  289. package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
  290. package/src/BackendDrivers/BackendDriver.ts +8 -8
  291. package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
  292. package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
  293. package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
  294. package/src/ChangeManager.ts +8 -3
  295. package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
  296. package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
  297. package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
  298. package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
  299. package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
  300. package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
  301. package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
  302. package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
  303. package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
  304. package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
  305. package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
  306. package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
  307. package/src/FeatureDetailsWidget/model.ts +3 -3
  308. package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
  309. package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
  310. package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
  311. package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
  312. package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
  313. package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
  314. package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
  315. package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
  316. package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
  317. package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
  318. package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
  319. package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
  320. package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
  321. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
  322. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
  323. package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
  324. package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
  325. package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
  326. package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
  327. package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
  328. package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
  329. package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
  330. package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
  331. package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
  332. package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
  333. package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
  334. package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
  335. package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
  336. package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
  337. package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
  338. package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
  339. package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
  340. package/src/OntologyManager/index.ts +4 -4
  341. package/src/OntologyManager/util.ts +1 -1
  342. package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
  343. package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
  344. package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
  345. package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
  346. package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
  347. package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
  348. package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
  349. package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
  350. package/src/TabularEditor/TabularEditorPane.tsx +1 -1
  351. package/src/TabularEditor/model.ts +2 -2
  352. package/src/TabularEditor/types.ts +2 -2
  353. package/src/components/AddAssembly.tsx +61 -42
  354. package/src/components/AddAssemblyAliases.tsx +5 -5
  355. package/src/components/AddChildFeature.tsx +3 -3
  356. package/src/components/AddFeature.tsx +4 -4
  357. package/src/components/AddRefSeqAliases.tsx +7 -7
  358. package/src/components/CopyFeature.tsx +8 -8
  359. package/src/components/CreateApolloAnnotation.tsx +5 -5
  360. package/src/components/DeleteAssembly.tsx +8 -8
  361. package/src/components/DeleteFeature.tsx +4 -4
  362. package/src/components/Dialog.tsx +1 -1
  363. package/src/components/DownloadGFF3.tsx +8 -8
  364. package/src/components/DuplicateTranscript.tsx +132 -0
  365. package/src/components/FilterFeatures.tsx +1 -1
  366. package/src/components/FilterTranscripts.tsx +1 -1
  367. package/src/components/ImportFeatures.tsx +51 -33
  368. package/src/components/LogOut.tsx +4 -4
  369. package/src/components/ManageChecks.tsx +8 -8
  370. package/src/components/ManageUsers.tsx +18 -26
  371. package/src/components/MergeExons.tsx +4 -4
  372. package/src/components/MergeTranscripts.tsx +4 -4
  373. package/src/components/OntologyTermAutocomplete.tsx +14 -4
  374. package/src/components/OntologyTermMultiSelect.tsx +12 -5
  375. package/src/components/OpenLocalFile.tsx +2 -2
  376. package/src/components/SplitExon.tsx +6 -6
  377. package/src/components/ViewChangeLog.tsx +8 -8
  378. package/src/components/ViewCheckResults.tsx +4 -4
  379. package/src/components/index.ts +1 -0
  380. package/src/config.ts +1 -1
  381. package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
  382. package/src/extensions/annotationFromPileup.ts +8 -6
  383. package/src/index.ts +25 -1
  384. package/src/makeDisplayComponent.tsx +8 -5
  385. package/src/menus/topLevelMenu.ts +4 -4
  386. package/src/menus/topLevelMenuAdmin.ts +4 -4
  387. package/src/session/ClientDataStore.ts +20 -15
  388. package/src/session/session.ts +30 -19
  389. package/src/types.ts +10 -4
  390. package/src/util/annotationFeatureUtils.ts +1 -1
  391. package/src/util/displayUtils.ts +3 -3
  392. package/src/util/glyphUtils.ts +10 -10
  393. package/src/util/index.ts +4 -4
  394. package/src/util/loadAssemblyIntoClient.ts +4 -4
  395. package/src/util/mouseEventsUtils.ts +2 -2
@@ -0,0 +1,668 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type PluginManager from '@jbrowse/core/PluginManager';
3
+ import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
4
+ import type { MenuItem } from '@jbrowse/core/ui';
5
+ import { type Instance } from '@jbrowse/mobx-state-tree';
6
+ import type { CSSProperties } from 'react';
7
+ import { type Edge, type MousePosition, type MousePositionWithFeature } from '../../util';
8
+ import type { CanvasMouseEvent } from '../types';
9
+ export declare function mouseEventsModelIntermediateFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
10
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
11
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
12
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
13
+ } & {
14
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloSixFrameDisplay">;
15
+ configuration: AnyConfigurationSchemaType;
16
+ graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
+ table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
+ showFeatureLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
+ showStartCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
+ showStopCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
21
+ showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
22
+ zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
23
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
24
+ filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
25
+ } & {
26
+ featuresMinMaxLimit: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
27
+ } & {
28
+ apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
29
+ detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
30
+ detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
31
+ lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
32
+ isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
33
+ filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
34
+ }, {
35
+ rendererTypeName: string;
36
+ error: unknown;
37
+ statusMessage: string | undefined;
38
+ } & {
39
+ readonly RenderingComponent: import("react").FC<{
40
+ model: {
41
+ id: string;
42
+ type: string;
43
+ rpcDriverName: string | undefined;
44
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
45
+ rendererTypeName: string;
46
+ error: unknown;
47
+ statusMessage: string | undefined;
48
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
49
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
50
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
51
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
52
+ }, {
53
+ rendererTypeName: string;
54
+ error: unknown;
55
+ statusMessage: string | undefined;
56
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
57
+ onHorizontalScroll?: () => void;
58
+ blockState?: Record<string, any>;
59
+ }>;
60
+ readonly DisplayBlurb: import("react").FC<{
61
+ model: {
62
+ id: string;
63
+ type: string;
64
+ rpcDriverName: string | undefined;
65
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
66
+ rendererTypeName: string;
67
+ error: unknown;
68
+ statusMessage: string | undefined;
69
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
70
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
71
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
72
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
73
+ }, {
74
+ rendererTypeName: string;
75
+ error: unknown;
76
+ statusMessage: string | undefined;
77
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
78
+ }> | null;
79
+ readonly adapterConfig: any;
80
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
81
+ readonly isMinimized: boolean;
82
+ readonly parentDisplay: any;
83
+ readonly effectiveRpcDriverName: any;
84
+ } & {
85
+ renderProps(): any;
86
+ renderingProps(): {
87
+ displayModel: {
88
+ id: string;
89
+ type: string;
90
+ rpcDriverName: string | undefined;
91
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
92
+ rendererTypeName: string;
93
+ error: unknown;
94
+ statusMessage: string | undefined;
95
+ } & {
96
+ readonly RenderingComponent: import("react").FC<{
97
+ model: {
98
+ id: string;
99
+ type: string;
100
+ rpcDriverName: string | undefined;
101
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
102
+ rendererTypeName: string;
103
+ error: unknown;
104
+ statusMessage: string | undefined;
105
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
106
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
108
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
109
+ }, {
110
+ rendererTypeName: string;
111
+ error: unknown;
112
+ statusMessage: string | undefined;
113
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
114
+ onHorizontalScroll?: () => void;
115
+ blockState?: Record<string, any>;
116
+ }>;
117
+ readonly DisplayBlurb: import("react").FC<{
118
+ model: {
119
+ id: string;
120
+ type: string;
121
+ rpcDriverName: string | undefined;
122
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
123
+ rendererTypeName: string;
124
+ error: unknown;
125
+ statusMessage: string | undefined;
126
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
127
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
128
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
129
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
130
+ }, {
131
+ rendererTypeName: string;
132
+ error: unknown;
133
+ statusMessage: string | undefined;
134
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
135
+ }> | null;
136
+ readonly adapterConfig: any;
137
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
138
+ readonly isMinimized: boolean;
139
+ readonly parentDisplay: any;
140
+ readonly effectiveRpcDriverName: any;
141
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
142
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
143
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
144
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
145
+ }, {
146
+ rendererTypeName: string;
147
+ error: unknown;
148
+ statusMessage: string | undefined;
149
+ } & {
150
+ readonly RenderingComponent: import("react").FC<{
151
+ model: {
152
+ id: string;
153
+ type: string;
154
+ rpcDriverName: string | undefined;
155
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
156
+ rendererTypeName: string;
157
+ error: unknown;
158
+ statusMessage: string | undefined;
159
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
160
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
161
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
162
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
163
+ }, {
164
+ rendererTypeName: string;
165
+ error: unknown;
166
+ statusMessage: string | undefined;
167
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
168
+ onHorizontalScroll?: () => void;
169
+ blockState?: Record<string, any>;
170
+ }>;
171
+ readonly DisplayBlurb: import("react").FC<{
172
+ model: {
173
+ id: string;
174
+ type: string;
175
+ rpcDriverName: string | undefined;
176
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
177
+ rendererTypeName: string;
178
+ error: unknown;
179
+ statusMessage: string | undefined;
180
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
181
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
182
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
183
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
184
+ }, {
185
+ rendererTypeName: string;
186
+ error: unknown;
187
+ statusMessage: string | undefined;
188
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
189
+ }> | null;
190
+ readonly adapterConfig: any;
191
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
192
+ readonly isMinimized: boolean;
193
+ readonly parentDisplay: any;
194
+ readonly effectiveRpcDriverName: any;
195
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
196
+ };
197
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
198
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
199
+ trackMenuItems(): MenuItem[];
200
+ readonly viewMenuActions: MenuItem[];
201
+ regionCannotBeRendered(): null;
202
+ } & {
203
+ setStatusMessage(arg?: string): void;
204
+ setError(error?: unknown): void;
205
+ setRpcDriverName(rpcDriverName: string): void;
206
+ reload(): void;
207
+ } & {
208
+ renderProps(): any;
209
+ } & {
210
+ scrollTop: number;
211
+ } & {
212
+ readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
213
+ readonly height: number;
214
+ readonly zoomThresholdSetting: number;
215
+ } & {
216
+ readonly rendererTypeName: any;
217
+ readonly session: import("../../session").ApolloSessionModel;
218
+ readonly regions: {
219
+ assemblyName: string;
220
+ refName: string;
221
+ start: number;
222
+ end: number;
223
+ }[];
224
+ regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
225
+ } & {
226
+ readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
227
+ readonly changeManager: import("../../ChangeManager").ChangeManager;
228
+ getAssemblyId(assemblyName: string): string;
229
+ readonly selectedFeature: AnnotationFeature | undefined;
230
+ readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
231
+ } & {
232
+ setScrollTop(scrollTop: number): void;
233
+ setHeight(displayHeight: number): number;
234
+ resizeHeight(distance: number): number;
235
+ showGraphicalOnly(): void;
236
+ showTableOnly(): void;
237
+ showGraphicalAndTable(): void;
238
+ toggleShowFeatureLabels(): void;
239
+ toggleShowStartCodons(): void;
240
+ toggleShowStopCodons(): void;
241
+ toggleShowCheckResults(): void;
242
+ updateFilteredFeatureTypes(types: string[]): void;
243
+ setZoomThresholdSetting({ zoomThreshold }: {
244
+ zoomThreshold: number;
245
+ }): void;
246
+ } & {
247
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
248
+ type: string;
249
+ label: string;
250
+ subMenu: ({
251
+ label: string;
252
+ type: string;
253
+ checked: boolean;
254
+ onClick: () => void;
255
+ } | {
256
+ label: string;
257
+ onClick: () => void;
258
+ type?: undefined;
259
+ checked?: undefined;
260
+ })[];
261
+ })[];
262
+ } & {
263
+ setSelectedFeature(feature?: AnnotationFeature): void;
264
+ setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
265
+ showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
266
+ afterAttach(): void;
267
+ } & {
268
+ seenFeatures: import("mobx").ObservableMap<string, AnnotationFeature>;
269
+ } & {
270
+ readonly featuresMinMax: (number[] | undefined)[];
271
+ getGlyph(_feature: AnnotationFeature): import("../glyphs/Glyph").Glyph;
272
+ featureLabelSpacer(elem: number): number;
273
+ } & {
274
+ addSeenFeature(feature: AnnotationFeature): void;
275
+ deleteSeenFeature(featureId: string): void;
276
+ } & {
277
+ readonly geneTrackRowNums: number[];
278
+ } & {
279
+ readonly featureLayouts: Map<number, import("./layouts").LayoutRow[]>[];
280
+ getFeatureLayoutPosition(feature: AnnotationFeature): {
281
+ layoutIndex: number;
282
+ layoutRow: number;
283
+ featureRow: number;
284
+ } | undefined;
285
+ } & {
286
+ readonly highestRow: number;
287
+ } & {
288
+ afterAttach(): void;
289
+ } & {
290
+ canvas: HTMLCanvasElement | null;
291
+ overlayCanvas: HTMLCanvasElement | null;
292
+ collaboratorCanvas: HTMLCanvasElement | null;
293
+ theme: import("@mui/material").Theme;
294
+ } & {
295
+ readonly featuresHeight: number;
296
+ } & {
297
+ toggleShown(): void;
298
+ setDetailsHeight(newHeight: number): void;
299
+ setCanvas(canvas: HTMLCanvasElement | null): void;
300
+ setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
301
+ setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
302
+ setTheme(theme: import("@mui/material").Theme): void;
303
+ } & {
304
+ afterAttach(): void;
305
+ } & {
306
+ apolloDragging: {
307
+ start: MousePosition;
308
+ current: MousePosition;
309
+ feature: AnnotationFeature;
310
+ edge: Edge;
311
+ shrinkParent: boolean;
312
+ } | null;
313
+ cursor: CSSProperties["cursor"] | undefined;
314
+ } & {
315
+ getMousePosition(event: React.MouseEvent): MousePosition;
316
+ } & {
317
+ continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
318
+ setDragging(dragInfo?: {
319
+ start: MousePosition;
320
+ current: MousePosition;
321
+ feature: AnnotationFeature;
322
+ edge: Edge;
323
+ shrinkParent: boolean;
324
+ } | null): void;
325
+ } & {
326
+ setCursor(cursor?: CSSProperties["cursor"]): void;
327
+ updateFilteredTranscripts(forms: string[]): void;
328
+ } & {
329
+ onClick(): void;
330
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
331
+ export declare function mouseEventsModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
332
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
333
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
334
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
335
+ } & {
336
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloSixFrameDisplay">;
337
+ configuration: AnyConfigurationSchemaType;
338
+ graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
339
+ table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
340
+ showFeatureLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
341
+ showStartCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
342
+ showStopCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
343
+ showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
344
+ zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
345
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
346
+ filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
347
+ } & {
348
+ featuresMinMaxLimit: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
349
+ } & {
350
+ apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
351
+ detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
352
+ detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
353
+ lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
354
+ isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
355
+ filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
356
+ }, {
357
+ rendererTypeName: string;
358
+ error: unknown;
359
+ statusMessage: string | undefined;
360
+ } & {
361
+ readonly RenderingComponent: import("react").FC<{
362
+ model: {
363
+ id: string;
364
+ type: string;
365
+ rpcDriverName: string | undefined;
366
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
367
+ rendererTypeName: string;
368
+ error: unknown;
369
+ statusMessage: string | undefined;
370
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
371
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
372
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
373
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
374
+ }, {
375
+ rendererTypeName: string;
376
+ error: unknown;
377
+ statusMessage: string | undefined;
378
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
379
+ onHorizontalScroll?: () => void;
380
+ blockState?: Record<string, any>;
381
+ }>;
382
+ readonly DisplayBlurb: import("react").FC<{
383
+ model: {
384
+ id: string;
385
+ type: string;
386
+ rpcDriverName: string | undefined;
387
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
388
+ rendererTypeName: string;
389
+ error: unknown;
390
+ statusMessage: string | undefined;
391
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
392
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
393
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
394
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
395
+ }, {
396
+ rendererTypeName: string;
397
+ error: unknown;
398
+ statusMessage: string | undefined;
399
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
400
+ }> | null;
401
+ readonly adapterConfig: any;
402
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
403
+ readonly isMinimized: boolean;
404
+ readonly parentDisplay: any;
405
+ readonly effectiveRpcDriverName: any;
406
+ } & {
407
+ renderProps(): any;
408
+ renderingProps(): {
409
+ displayModel: {
410
+ id: string;
411
+ type: string;
412
+ rpcDriverName: string | undefined;
413
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
414
+ rendererTypeName: string;
415
+ error: unknown;
416
+ statusMessage: string | undefined;
417
+ } & {
418
+ readonly RenderingComponent: import("react").FC<{
419
+ model: {
420
+ id: string;
421
+ type: string;
422
+ rpcDriverName: string | undefined;
423
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
424
+ rendererTypeName: string;
425
+ error: unknown;
426
+ statusMessage: string | undefined;
427
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
428
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
429
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
430
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
431
+ }, {
432
+ rendererTypeName: string;
433
+ error: unknown;
434
+ statusMessage: string | undefined;
435
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
436
+ onHorizontalScroll?: () => void;
437
+ blockState?: Record<string, any>;
438
+ }>;
439
+ readonly DisplayBlurb: import("react").FC<{
440
+ model: {
441
+ id: string;
442
+ type: string;
443
+ rpcDriverName: string | undefined;
444
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
445
+ rendererTypeName: string;
446
+ error: unknown;
447
+ statusMessage: string | undefined;
448
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
449
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
450
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
451
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
452
+ }, {
453
+ rendererTypeName: string;
454
+ error: unknown;
455
+ statusMessage: string | undefined;
456
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
457
+ }> | null;
458
+ readonly adapterConfig: any;
459
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
460
+ readonly isMinimized: boolean;
461
+ readonly parentDisplay: any;
462
+ readonly effectiveRpcDriverName: any;
463
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
464
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
465
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
466
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
467
+ }, {
468
+ rendererTypeName: string;
469
+ error: unknown;
470
+ statusMessage: string | undefined;
471
+ } & {
472
+ readonly RenderingComponent: import("react").FC<{
473
+ model: {
474
+ id: string;
475
+ type: string;
476
+ rpcDriverName: string | undefined;
477
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
478
+ rendererTypeName: string;
479
+ error: unknown;
480
+ statusMessage: string | undefined;
481
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
482
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
483
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
484
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
485
+ }, {
486
+ rendererTypeName: string;
487
+ error: unknown;
488
+ statusMessage: string | undefined;
489
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
490
+ onHorizontalScroll?: () => void;
491
+ blockState?: Record<string, any>;
492
+ }>;
493
+ readonly DisplayBlurb: import("react").FC<{
494
+ model: {
495
+ id: string;
496
+ type: string;
497
+ rpcDriverName: string | undefined;
498
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
499
+ rendererTypeName: string;
500
+ error: unknown;
501
+ statusMessage: string | undefined;
502
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
503
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
504
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
505
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
506
+ }, {
507
+ rendererTypeName: string;
508
+ error: unknown;
509
+ statusMessage: string | undefined;
510
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
511
+ }> | null;
512
+ readonly adapterConfig: any;
513
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
514
+ readonly isMinimized: boolean;
515
+ readonly parentDisplay: any;
516
+ readonly effectiveRpcDriverName: any;
517
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
518
+ };
519
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
520
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
521
+ trackMenuItems(): MenuItem[];
522
+ readonly viewMenuActions: MenuItem[];
523
+ regionCannotBeRendered(): null;
524
+ } & {
525
+ setStatusMessage(arg?: string): void;
526
+ setError(error?: unknown): void;
527
+ setRpcDriverName(rpcDriverName: string): void;
528
+ reload(): void;
529
+ } & {
530
+ renderProps(): any;
531
+ } & {
532
+ scrollTop: number;
533
+ } & {
534
+ readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
535
+ readonly height: number;
536
+ readonly zoomThresholdSetting: number;
537
+ } & {
538
+ readonly rendererTypeName: any;
539
+ readonly session: import("../../session").ApolloSessionModel;
540
+ readonly regions: {
541
+ assemblyName: string;
542
+ refName: string;
543
+ start: number;
544
+ end: number;
545
+ }[];
546
+ regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
547
+ } & {
548
+ readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
549
+ readonly changeManager: import("../../ChangeManager").ChangeManager;
550
+ getAssemblyId(assemblyName: string): string;
551
+ readonly selectedFeature: AnnotationFeature | undefined;
552
+ readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
553
+ } & {
554
+ setScrollTop(scrollTop: number): void;
555
+ setHeight(displayHeight: number): number;
556
+ resizeHeight(distance: number): number;
557
+ showGraphicalOnly(): void;
558
+ showTableOnly(): void;
559
+ showGraphicalAndTable(): void;
560
+ toggleShowFeatureLabels(): void;
561
+ toggleShowStartCodons(): void;
562
+ toggleShowStopCodons(): void;
563
+ toggleShowCheckResults(): void;
564
+ updateFilteredFeatureTypes(types: string[]): void;
565
+ setZoomThresholdSetting({ zoomThreshold }: {
566
+ zoomThreshold: number;
567
+ }): void;
568
+ } & {
569
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
570
+ type: string;
571
+ label: string;
572
+ subMenu: ({
573
+ label: string;
574
+ type: string;
575
+ checked: boolean;
576
+ onClick: () => void;
577
+ } | {
578
+ label: string;
579
+ onClick: () => void;
580
+ type?: undefined;
581
+ checked?: undefined;
582
+ })[];
583
+ })[];
584
+ } & {
585
+ setSelectedFeature(feature?: AnnotationFeature): void;
586
+ setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
587
+ showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
588
+ afterAttach(): void;
589
+ } & {
590
+ seenFeatures: import("mobx").ObservableMap<string, AnnotationFeature>;
591
+ } & {
592
+ readonly featuresMinMax: (number[] | undefined)[];
593
+ getGlyph(_feature: AnnotationFeature): import("../glyphs/Glyph").Glyph;
594
+ featureLabelSpacer(elem: number): number;
595
+ } & {
596
+ addSeenFeature(feature: AnnotationFeature): void;
597
+ deleteSeenFeature(featureId: string): void;
598
+ } & {
599
+ readonly geneTrackRowNums: number[];
600
+ } & {
601
+ readonly featureLayouts: Map<number, import("./layouts").LayoutRow[]>[];
602
+ getFeatureLayoutPosition(feature: AnnotationFeature): {
603
+ layoutIndex: number;
604
+ layoutRow: number;
605
+ featureRow: number;
606
+ } | undefined;
607
+ } & {
608
+ readonly highestRow: number;
609
+ } & {
610
+ afterAttach(): void;
611
+ } & {
612
+ canvas: HTMLCanvasElement | null;
613
+ overlayCanvas: HTMLCanvasElement | null;
614
+ collaboratorCanvas: HTMLCanvasElement | null;
615
+ theme: import("@mui/material").Theme;
616
+ } & {
617
+ readonly featuresHeight: number;
618
+ } & {
619
+ toggleShown(): void;
620
+ setDetailsHeight(newHeight: number): void;
621
+ setCanvas(canvas: HTMLCanvasElement | null): void;
622
+ setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
623
+ setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
624
+ setTheme(theme: import("@mui/material").Theme): void;
625
+ } & {
626
+ afterAttach(): void;
627
+ } & {
628
+ apolloDragging: {
629
+ start: MousePosition;
630
+ current: MousePosition;
631
+ feature: AnnotationFeature;
632
+ edge: Edge;
633
+ shrinkParent: boolean;
634
+ } | null;
635
+ cursor: CSSProperties["cursor"] | undefined;
636
+ } & {
637
+ getMousePosition(event: React.MouseEvent): MousePosition;
638
+ } & {
639
+ continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
640
+ setDragging(dragInfo?: {
641
+ start: MousePosition;
642
+ current: MousePosition;
643
+ feature: AnnotationFeature;
644
+ edge: Edge;
645
+ shrinkParent: boolean;
646
+ } | null): void;
647
+ } & {
648
+ setCursor(cursor?: CSSProperties["cursor"]): void;
649
+ updateFilteredTranscripts(forms: string[]): void;
650
+ } & {
651
+ onClick(): void;
652
+ } & {
653
+ contextMenuItems(event: React.MouseEvent<HTMLDivElement>): MenuItem[];
654
+ } & {
655
+ startDrag(mousePosition: MousePositionWithFeature, feature: AnnotationFeature, edge: Edge, shrinkParent?: boolean): void;
656
+ endDrag(): void;
657
+ } & {
658
+ onMouseDown(event: CanvasMouseEvent): void;
659
+ onMouseMove(event: CanvasMouseEvent): void;
660
+ onMouseLeave(event: CanvasMouseEvent): void;
661
+ onMouseUp(event: CanvasMouseEvent): void;
662
+ } & {
663
+ afterAttach(): void;
664
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
665
+ export type LinearApolloSixFrameDisplayMouseEventsModel = ReturnType<typeof mouseEventsModelIntermediateFactory>;
666
+ export interface LinearApolloSixFrameDisplayMouseEvents extends Instance<LinearApolloSixFrameDisplayMouseEventsModel> {
667
+ }
668
+ //# sourceMappingURL=mouseEvents.d.ts.map