@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/index.d.ts +3 -0
- package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
- package/dist/ApolloJobModel.d.ts +53 -0
- package/dist/ApolloJobModel.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
- package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
- package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
- package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/index.d.ts +5 -0
- package/dist/BackendDrivers/index.d.ts.map +1 -0
- package/dist/ChangeManager.d.ts +24 -0
- package/dist/ChangeManager.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/index.d.ts +5 -0
- package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/model.d.ts +123 -0
- package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/index.d.ts +3 -0
- package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/types.d.ts +2 -0
- package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
- package/dist/OntologyManager/util.d.ts +4 -0
- package/dist/OntologyManager/util.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
- package/dist/TabularEditor/index.d.ts +3 -0
- package/dist/TabularEditor/index.d.ts.map +1 -0
- package/dist/TabularEditor/model.d.ts +17 -0
- package/dist/TabularEditor/model.d.ts.map +1 -0
- package/dist/TabularEditor/types.d.ts +4 -0
- package/dist/TabularEditor/types.d.ts.map +1 -0
- package/dist/components/AddAssembly.d.ts +10 -0
- package/dist/components/AddAssembly.d.ts.map +1 -0
- package/dist/components/AddAssemblyAliases.d.ts +10 -0
- package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
- package/dist/components/AddChildFeature.d.ts +13 -0
- package/dist/components/AddChildFeature.d.ts.map +1 -0
- package/dist/components/AddFeature.d.ts +12 -0
- package/dist/components/AddFeature.d.ts.map +1 -0
- package/dist/components/AddRefSeqAliases.d.ts +10 -0
- package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
- package/dist/components/CopyFeature.d.ts +13 -0
- package/dist/components/CopyFeature.d.ts.map +1 -0
- package/dist/components/CreateApolloAnnotation.d.ts +20 -0
- package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
- package/dist/components/DeleteAssembly.d.ts +10 -0
- package/dist/components/DeleteAssembly.d.ts.map +1 -0
- package/dist/components/DeleteFeature.d.ts +15 -0
- package/dist/components/DeleteFeature.d.ts.map +1 -0
- package/dist/components/Dialog.d.ts +7 -0
- package/dist/components/Dialog.d.ts.map +1 -0
- package/dist/components/DownloadGFF3.d.ts +8 -0
- package/dist/components/DownloadGFF3.d.ts.map +1 -0
- package/dist/components/DuplicateTranscript.d.ts +15 -0
- package/dist/components/DuplicateTranscript.d.ts.map +1 -0
- package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
- package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
- package/dist/components/FilterFeatures.d.ts +10 -0
- package/dist/components/FilterFeatures.d.ts.map +1 -0
- package/dist/components/FilterTranscripts.d.ts +10 -0
- package/dist/components/FilterTranscripts.d.ts.map +1 -0
- package/dist/components/ImportFeatures.d.ts +10 -0
- package/dist/components/ImportFeatures.d.ts.map +1 -0
- package/dist/components/LogOut.d.ts +8 -0
- package/dist/components/LogOut.d.ts.map +1 -0
- package/dist/components/ManageChecks.d.ts +8 -0
- package/dist/components/ManageChecks.d.ts.map +1 -0
- package/dist/components/ManageUsers.d.ts +10 -0
- package/dist/components/ManageUsers.d.ts.map +1 -0
- package/dist/components/MergeExons.d.ts +15 -0
- package/dist/components/MergeExons.d.ts.map +1 -0
- package/dist/components/MergeTranscripts.d.ts +15 -0
- package/dist/components/MergeTranscripts.d.ts.map +1 -0
- package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
- package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
- package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
- package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
- package/dist/components/OpenLocalFile.d.ts +15 -0
- package/dist/components/OpenLocalFile.d.ts.map +1 -0
- package/dist/components/SplitExon.d.ts +15 -0
- package/dist/components/SplitExon.d.ts.map +1 -0
- package/dist/components/ViewChangeLog.d.ts +8 -0
- package/dist/components/ViewChangeLog.d.ts.map +1 -0
- package/dist/components/ViewCheckResults.d.ts +8 -0
- package/dist/components/ViewCheckResults.d.ts.map +1 -0
- package/dist/components/index.d.ts +21 -0
- package/dist/components/index.d.ts.map +1 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
- package/dist/extensions/annotationFromPileup.d.ts +3 -0
- package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
- package/dist/extensions/index.d.ts +3 -0
- package/dist/extensions/index.d.ts.map +1 -0
- package/dist/index.esm.js +843 -1330
- package/dist/index.esm.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
- package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63619
- package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
- package/dist/makeDisplayComponent.d.ts +9 -0
- package/dist/makeDisplayComponent.d.ts.map +1 -0
- package/dist/menus/index.d.ts +2 -0
- package/dist/menus/index.d.ts.map +1 -0
- package/dist/menus/topLevelMenu.d.ts +3 -0
- package/dist/menus/topLevelMenu.d.ts.map +1 -0
- package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
- package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
- package/dist/session/index.d.ts +2 -0
- package/dist/session/index.d.ts.map +1 -0
- package/dist/types.d.ts +10 -0
- package/dist/types.d.ts.map +1 -0
- package/dist/util/annotationFeatureUtils.d.ts +7 -0
- package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
- package/dist/util/copyToClipboard.d.ts +2 -0
- package/dist/util/copyToClipboard.d.ts.map +1 -0
- package/dist/util/glyphUtils.d.ts +31 -0
- package/dist/util/glyphUtils.d.ts.map +1 -0
- package/dist/util/index.d.ts +10 -0
- package/dist/util/index.d.ts.map +1 -0
- package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
- package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
- package/dist/util/mouseEventsUtils.d.ts +25 -0
- package/dist/util/mouseEventsUtils.d.ts.map +1 -0
- package/package.json +48 -25
- package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
- package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
- package/src/ApolloInternetAccount/configSchema.ts +1 -1
- package/src/ApolloInternetAccount/model.ts +13 -6
- package/src/ApolloJobModel.ts +3 -3
- package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
- package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
- package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
- package/src/BackendDrivers/BackendDriver.ts +8 -8
- package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
- package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
- package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
- package/src/ChangeManager.ts +8 -3
- package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
- package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
- package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
- package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
- package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
- package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
- package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
- package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
- package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
- package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
- package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
- package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
- package/src/FeatureDetailsWidget/model.ts +3 -3
- package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
- package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
- package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
- package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
- package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
- package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
- package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
- package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
- package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
- package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
- package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
- package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
- package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
- package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
- package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
- package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
- package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
- package/src/OntologyManager/index.ts +4 -4
- package/src/OntologyManager/util.ts +1 -1
- package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
- package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
- package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
- package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
- package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
- package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
- package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
- package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
- package/src/TabularEditor/TabularEditorPane.tsx +1 -1
- package/src/TabularEditor/model.ts +2 -2
- package/src/TabularEditor/types.ts +2 -2
- package/src/components/AddAssembly.tsx +61 -42
- package/src/components/AddAssemblyAliases.tsx +5 -5
- package/src/components/AddChildFeature.tsx +3 -3
- package/src/components/AddFeature.tsx +4 -4
- package/src/components/AddRefSeqAliases.tsx +7 -7
- package/src/components/CopyFeature.tsx +8 -8
- package/src/components/CreateApolloAnnotation.tsx +5 -5
- package/src/components/DeleteAssembly.tsx +8 -8
- package/src/components/DeleteFeature.tsx +4 -4
- package/src/components/Dialog.tsx +1 -1
- package/src/components/DownloadGFF3.tsx +8 -8
- package/src/components/DuplicateTranscript.tsx +132 -0
- package/src/components/FilterFeatures.tsx +1 -1
- package/src/components/FilterTranscripts.tsx +1 -1
- package/src/components/ImportFeatures.tsx +51 -33
- package/src/components/LogOut.tsx +4 -4
- package/src/components/ManageChecks.tsx +8 -8
- package/src/components/ManageUsers.tsx +18 -26
- package/src/components/MergeExons.tsx +4 -4
- package/src/components/MergeTranscripts.tsx +4 -4
- package/src/components/OntologyTermAutocomplete.tsx +14 -4
- package/src/components/OntologyTermMultiSelect.tsx +12 -5
- package/src/components/OpenLocalFile.tsx +2 -2
- package/src/components/SplitExon.tsx +6 -6
- package/src/components/ViewChangeLog.tsx +8 -8
- package/src/components/ViewCheckResults.tsx +4 -4
- package/src/components/index.ts +1 -0
- package/src/config.ts +1 -1
- package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
- package/src/extensions/annotationFromPileup.ts +8 -6
- package/src/index.ts +25 -1
- package/src/makeDisplayComponent.tsx +8 -5
- package/src/menus/topLevelMenu.ts +4 -4
- package/src/menus/topLevelMenuAdmin.ts +4 -4
- package/src/session/ClientDataStore.ts +20 -15
- package/src/session/session.ts +30 -19
- package/src/types.ts +10 -4
- package/src/util/annotationFeatureUtils.ts +1 -1
- package/src/util/displayUtils.ts +3 -3
- package/src/util/glyphUtils.ts +10 -10
- package/src/util/index.ts +4 -4
- package/src/util/loadAssemblyIntoClient.ts +4 -4
- package/src/util/mouseEventsUtils.ts +2 -2
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{"version":3,"file":"GenericChildGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAiMpC,eAAO,MAAM,iBAAiB,EAAE,KAc/B,CAAA"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type { MenuItem } from '@jbrowse/core/ui';
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import type { OntologyRecord } from '../../OntologyManager';
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import type { MousePositionWithFeature } from '../../util';
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import type { LinearApolloDisplayMouseEvents } from '../stateModel/mouseEvents';
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import type { LinearApolloDisplayRendering } from '../stateModel/rendering';
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import type { CanvasMouseEvent } from '../types';
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export interface Glyph {
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/** @returns number of layout rows used by this glyph with this feature and zoom level */
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getRowCount(feature: AnnotationFeature, featureTypeOntology: OntologyRecord, bpPerPx: number): number;
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/** draw the feature's primary rendering on the canvas */
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draw(ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, stateModel: LinearApolloDisplayRendering, displayedRegionIndex: number): void;
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/** @returns the feature or subfeature at the given bp and row number in this glyph's layout */
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getFeatureFromLayout(feature: AnnotationFeature, bp: number, row: number, featureTypeOntology: OntologyRecord): AnnotationFeature | undefined;
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getRowForFeature(feature: AnnotationFeature, childFeature: AnnotationFeature, featureTypeOntology: OntologyRecord): number | undefined;
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drawHover(display: LinearApolloDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
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drawDragPreview(display: LinearApolloDisplayMouseEvents, ctx: CanvasRenderingContext2D): void;
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onMouseDown(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
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onMouseMove(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
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onMouseLeave(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
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onMouseUp(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
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drawTooltip(display: LinearApolloDisplayMouseEvents, context: CanvasRenderingContext2D): void;
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getContextMenuItemsForFeature(display: LinearApolloDisplayMouseEvents, sourceFeature: AnnotationFeature): MenuItem[];
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getContextMenuItems(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature): MenuItem[];
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}
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//# sourceMappingURL=Glyph.d.ts.map
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{"version":3,"file":"Glyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/Glyph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAEhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAA;AAC3D,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,YAAY,CAAA;AAC1D,OAAO,KAAK,EAAE,8BAA8B,EAAE,MAAM,2BAA2B,CAAA;AAC/E,OAAO,KAAK,EAAE,4BAA4B,EAAE,MAAM,yBAAyB,CAAA;AAC3E,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAA;AAEhD,MAAM,WAAW,KAAK;IACpB,yFAAyF;IACzF,WAAW,CACT,OAAO,EAAE,iBAAiB,EAC1B,mBAAmB,EAAE,cAAc,EACnC,OAAO,EAAE,MAAM,GACd,MAAM,CAAA;IACT,yDAAyD;IACzD,IAAI,CACF,GAAG,EAAE,wBAAwB,EAC7B,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,4BAA4B,EACxC,oBAAoB,EAAE,MAAM,GAC3B,IAAI,CAAA;IACP,+FAA+F;IAC/F,oBAAoB,CAClB,OAAO,EAAE,iBAAiB,EAC1B,EAAE,EAAE,MAAM,EACV,GAAG,EAAE,MAAM,EACX,mBAAmB,EAAE,cAAc,GAClC,iBAAiB,GAAG,SAAS,CAAA;IAChC,gBAAgB,CACd,OAAO,EAAE,iBAAiB,EAC1B,YAAY,EAAE,iBAAiB,EAC/B,mBAAmB,EAAE,cAAc,GAClC,MAAM,GAAG,SAAS,CAAA;IAErB,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,UAAU,EAAE,wBAAwB,GACnC,IAAI,CAAA;IAEP,eAAe,CACb,OAAO,EAAE,8BAA8B,EACvC,GAAG,EAAE,wBAAwB,GAC5B,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,YAAY,CACV,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,OAAO,EAAE,wBAAwB,GAChC,IAAI,CAAA;IAEP,6BAA6B,CAC3B,OAAO,EAAE,8BAA8B,EACvC,aAAa,EAAE,iBAAiB,GAC/B,QAAQ,EAAE,CAAA;IAEb,mBAAmB,CACjB,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,GAC7C,QAAQ,EAAE,CAAA;CACd"}
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAA;AAC1B,cAAc,aAAa,CAAA;AAC3B,cAAc,qBAAqB,CAAA"}
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import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
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import type { LinearApolloDisplay } from '../stateModel';
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export declare function getLeftPx(display: LinearApolloDisplay, feature: {
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max: number;
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min: number;
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}, block: ContentBlock): number;
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/**
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* Perform a canvas strokeRect, but have the stroke be contained within the
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* given rect instead of centered on it.
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*/
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export declare function strokeRectInner(ctx: CanvasRenderingContext2D, left: number, top: number, width: number, height: number, color: string): void;
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//# sourceMappingURL=util.d.ts.map
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{"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAA;AAEjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AAExD,wBAAgB,SAAS,CACvB,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,KAAK,EAAE,YAAY,UAWpB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,GAAG,EAAE,wBAAwB,EAC7B,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,MAAM,QAKd"}
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/LinearApolloDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAA;AAC7C,OAAO,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type PluginManager from '@jbrowse/core/PluginManager';
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import { type AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
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import type { ApolloInternetAccountModel } from '../../ApolloInternetAccount/model';
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import type { ApolloSessionModel, HoveredFeature } from '../../session';
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export declare function baseModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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} & {
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type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
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configuration: AnyConfigurationSchemaType;
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graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: () => void;
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blockState?: Record<string, any>;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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readonly isMinimized: boolean;
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readonly parentDisplay: any;
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readonly effectiveRpcDriverName: any;
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} & {
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renderProps(): any;
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renderingProps(): {
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displayModel: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
|
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91
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statusMessage: string | undefined;
|
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92
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+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
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93
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
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+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
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96
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+
}, {
|
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rendererTypeName: string;
|
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+
error: unknown;
|
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99
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+
statusMessage: string | undefined;
|
|
100
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+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
101
|
+
onHorizontalScroll?: () => void;
|
|
102
|
+
blockState?: Record<string, any>;
|
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103
|
+
}>;
|
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104
|
+
readonly DisplayBlurb: import("react").FC<{
|
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105
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
|
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109
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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statusMessage: string | undefined;
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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114
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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115
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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119
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error: unknown;
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120
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statusMessage: string | undefined;
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121
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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122
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+
}> | null;
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123
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readonly adapterConfig: any;
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124
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readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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125
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readonly isMinimized: boolean;
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126
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readonly parentDisplay: any;
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readonly effectiveRpcDriverName: any;
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128
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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130
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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131
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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135
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statusMessage: string | undefined;
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136
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
|
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statusMessage: string | undefined;
|
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
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|
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id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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|
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type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
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rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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}, {
|
|
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|
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rendererTypeName: string;
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error: unknown;
|
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153
|
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statusMessage: string | undefined;
|
|
154
|
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
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155
|
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onHorizontalScroll?: () => void;
|
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156
|
+
blockState?: Record<string, any>;
|
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157
|
+
}>;
|
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158
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
159
|
+
model: {
|
|
160
|
+
id: string;
|
|
161
|
+
type: string;
|
|
162
|
+
rpcDriverName: string | undefined;
|
|
163
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
164
|
+
rendererTypeName: string;
|
|
165
|
+
error: unknown;
|
|
166
|
+
statusMessage: string | undefined;
|
|
167
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
168
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
169
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
170
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
171
|
+
}, {
|
|
172
|
+
rendererTypeName: string;
|
|
173
|
+
error: unknown;
|
|
174
|
+
statusMessage: string | undefined;
|
|
175
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
176
|
+
}> | null;
|
|
177
|
+
readonly adapterConfig: any;
|
|
178
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
179
|
+
readonly isMinimized: boolean;
|
|
180
|
+
readonly parentDisplay: any;
|
|
181
|
+
readonly effectiveRpcDriverName: any;
|
|
182
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
183
|
+
};
|
|
184
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
185
|
+
readonly DisplayMessageComponent: undefined | import("react").FC<any>;
|
|
186
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
187
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
188
|
+
regionCannotBeRendered(): null;
|
|
189
|
+
} & {
|
|
190
|
+
setStatusMessage(arg?: string): void;
|
|
191
|
+
setError(error?: unknown): void;
|
|
192
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
193
|
+
reload(): void;
|
|
194
|
+
} & {
|
|
195
|
+
renderProps(): any;
|
|
196
|
+
} & {
|
|
197
|
+
scrollTop: number;
|
|
198
|
+
} & {
|
|
199
|
+
readonly lgv: LinearGenomeViewModel;
|
|
200
|
+
readonly height: number;
|
|
201
|
+
readonly loading: boolean;
|
|
202
|
+
readonly zoomThresholdSetting: number;
|
|
203
|
+
} & {
|
|
204
|
+
readonly rendererTypeName: any;
|
|
205
|
+
readonly session: ApolloSessionModel;
|
|
206
|
+
readonly regions: {
|
|
207
|
+
assemblyName: string;
|
|
208
|
+
refName: string;
|
|
209
|
+
start: number;
|
|
210
|
+
end: number;
|
|
211
|
+
}[];
|
|
212
|
+
regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
|
|
213
|
+
} & {
|
|
214
|
+
readonly apolloInternetAccount: ApolloInternetAccountModel | undefined;
|
|
215
|
+
readonly changeManager: import("../../ChangeManager").ChangeManager;
|
|
216
|
+
getAssemblyId(assemblyName: string): string;
|
|
217
|
+
readonly selectedFeature: AnnotationFeature | undefined;
|
|
218
|
+
readonly hoveredFeature: HoveredFeature | undefined;
|
|
219
|
+
} & {
|
|
220
|
+
setScrollTop(scrollTop: number): void;
|
|
221
|
+
setHeight(displayHeight: number): number;
|
|
222
|
+
resizeHeight(distance: number): number;
|
|
223
|
+
showGraphicalOnly(): void;
|
|
224
|
+
showTableOnly(): void;
|
|
225
|
+
showGraphicalAndTable(): void;
|
|
226
|
+
toggleShowCheckResults(): void;
|
|
227
|
+
updateFilteredFeatureTypes(types: string[]): void;
|
|
228
|
+
setLoading(loading: boolean): void;
|
|
229
|
+
setZoomThresholdSetting({ zoomThreshold }: {
|
|
230
|
+
zoomThreshold: number;
|
|
231
|
+
}): void;
|
|
232
|
+
} & {
|
|
233
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
234
|
+
type: string;
|
|
235
|
+
label: string;
|
|
236
|
+
subMenu: ({
|
|
237
|
+
label: string;
|
|
238
|
+
type: string;
|
|
239
|
+
checked: boolean;
|
|
240
|
+
onClick: () => void;
|
|
241
|
+
} | {
|
|
242
|
+
label: string;
|
|
243
|
+
onClick: () => void;
|
|
244
|
+
type?: undefined;
|
|
245
|
+
checked?: undefined;
|
|
246
|
+
})[];
|
|
247
|
+
})[];
|
|
248
|
+
} & {
|
|
249
|
+
setSelectedFeature(feature?: AnnotationFeature): void;
|
|
250
|
+
setHoveredFeature(hoveredFeature?: HoveredFeature): void;
|
|
251
|
+
showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
|
|
252
|
+
afterAttach(): void;
|
|
253
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
254
|
+
//# sourceMappingURL=base.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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|