@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

package/dist/LinearApolloDisplay/stateModel/rendering.d.ts

@@ -0,0 +1,300 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { type Instance } from '@jbrowse/mobx-state-tree';
+import { type Theme } from '@mui/material';
+import type { ApolloSessionModel } from '../../session';
+export declare function renderingModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & {
+    cleanupBoundary: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+} & {
+    apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    scrollTop: number;
+} & {
+    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+    readonly height: number;
+    readonly loading: boolean;
+    readonly zoomThresholdSetting: number;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
+} & {
+    readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    showGraphicalOnly(): void;
+    showTableOnly(): void;
+    showGraphicalAndTable(): void;
+    toggleShowCheckResults(): void;
+    updateFilteredFeatureTypes(types: string[]): void;
+    setLoading(loading: boolean): void;
+    setZoomThresholdSetting({ zoomThreshold }: {
+        zoomThreshold: number;
+    }): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: ({
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        } | {
+            label: string;
+            onClick: () => void;
+            type?: undefined;
+            checked?: undefined;
+        })[];
+    })[];
+} & {
+    setSelectedFeature(feature?: import("@apollo-annotation/mst").AnnotationFeature): void;
+    setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
+    showFeatureDetailsWidget(feature: import("@apollo-annotation/mst").AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
+    afterAttach(): void;
+} & {
+    seenFeatures: import("mobx").ObservableMap<string, import("@apollo-annotation/mst").AnnotationFeature>;
+} & {
+    getAnnotationFeatureById(id: string): import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    getGlyph(feature: import("@apollo-annotation/mst").AnnotationFeature): import("../glyphs/Glyph").Glyph;
+} & {
+    addSeenFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): void;
+    deleteSeenFeature(featureId: string): void;
+} & {
+    readonly featureLayouts: Map<number, [number, string][]>[];
+    getFeatureLayoutPosition(feature: import("@apollo-annotation/mst").AnnotationFeature): {
+        layoutIndex: number;
+        layoutRow: number;
+        featureRow: number;
+    } | undefined;
+} & {
+    readonly highestRow: number;
+} & {
+    afterAttach(): void;
+} & {
+    canvas: HTMLCanvasElement | null;
+    overlayCanvas: HTMLCanvasElement | null;
+    collaboratorCanvas: HTMLCanvasElement | null;
+    theme: Theme;
+} & {
+    readonly featuresHeight: number;
+} & {
+    toggleShown(): void;
+    setDetailsHeight(newHeight: number): void;
+    setCanvas(canvas: HTMLCanvasElement | null): void;
+    setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
+    setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
+    setTheme(theme: Theme): void;
+} & {
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export type LinearApolloDisplayRenderingModel = ReturnType<typeof renderingModelFactory>;
+export interface LinearApolloDisplayRendering extends Instance<LinearApolloDisplayRenderingModel> {
+}
+//# sourceMappingURL=rendering.d.ts.map

package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map

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package/dist/LinearApolloDisplay/types.d.ts

@@ -0,0 +1,2 @@
+export type CanvasMouseEvent = React.MouseEvent<HTMLCanvasElement>;
+//# sourceMappingURL=types.d.ts.map

package/dist/LinearApolloDisplay/types.d.ts.map

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package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts

@@ -0,0 +1,7 @@
+import type { LinearApolloReferenceSequenceDisplay as LinearApolloReferenceSequenceDisplayI } from '../stateModel';
+interface LinearApolloReferenceSequenceDisplayProps {
+    model: LinearApolloReferenceSequenceDisplayI;
+}
+export declare const LinearApolloReferenceSequenceDisplay: (props: LinearApolloReferenceSequenceDisplayProps) => import("react/jsx-runtime").JSX.Element;
+export {};
+//# sourceMappingURL=LinearApolloReferenceSequenceDisplay.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map

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package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts

@@ -0,0 +1,2 @@
+export * from './LinearApolloReferenceSequenceDisplay';
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map

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package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts

@@ -0,0 +1,6 @@
+import type { AnnotationFeature } from '@apollo-annotation/mst';
+import type { BlockSet } from '@jbrowse/core/util/blockTypes';
+import type { Theme } from '@mui/material';
+import type { ApolloSessionModel, HoveredFeature } from '../session';
+export declare function drawSequenceOverlay(canvas: HTMLCanvasElement, ctx: CanvasRenderingContext2D, hoveredFeature: HoveredFeature | undefined, selectedFeature: AnnotationFeature | undefined, rowHeight: number, theme: Theme, session: ApolloSessionModel, bpPerPx: number, offsetPx: number, dynamicBlocks: BlockSet): void;
+//# sourceMappingURL=drawSequenceOverlay.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map

@@ -0,0 +1 @@
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package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts

@@ -0,0 +1,5 @@
+import type { BlockSet } from '@jbrowse/core/util/blockTypes';
+import type { Theme } from '@mui/material';
+import type { ApolloSessionModel } from '../session';
+export declare function drawSequenceTrack(canvas: HTMLCanvasElement, theme: Theme, bpPerPx: number, offsetPx: number, dynamicBlocks: BlockSet, highContrast: boolean, showStartCodons: boolean, showStopCodons: boolean, sequenceRowHeight: number, session: ApolloSessionModel): void;
+//# sourceMappingURL=drawSequenceTrack.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map

@@ -0,0 +1 @@
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package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts

@@ -0,0 +1,4 @@
+export { configSchema } from './configSchema';
+export { stateModelFactory } from './stateModel';
+export { LinearApolloReferenceSequenceDisplay } from './components/LinearApolloReferenceSequenceDisplay';
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map

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package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts

@@ -0,0 +1,236 @@
+import type { AnnotationFeature } from '@apollo-annotation/mst';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import { type AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type { ApolloInternetAccountModel } from '../../ApolloInternetAccount/model';
+import type { ApolloSessionModel, HoveredFeature } from '../../session';
+export declare function baseModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloReferenceSequenceDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    showStartCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showStopCodons: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    highContrast: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    sequenceRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    readonly lgv: LinearGenomeViewModel;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see sequence" | undefined;
+} & {
+    readonly apolloInternetAccount: ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: AnnotationFeature | undefined;
+    readonly hoveredFeature: HoveredFeature | undefined;
+    readonly height: number;
+} & {
+    scrollTop: number;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    toggleShowStartCodons(): void;
+    toggleShowStopCodons(): void;
+    toggleHighContrast(): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+    })[];
+} & {
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+//# sourceMappingURL=base.d.ts.map

package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map

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