@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (395) hide show
  1. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
  2. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
  3. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
  4. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
  5. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
  6. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
  7. package/dist/ApolloInternetAccount/index.d.ts +3 -0
  8. package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
  9. package/dist/ApolloJobModel.d.ts +53 -0
  10. package/dist/ApolloJobModel.d.ts.map +1 -0
  11. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
  12. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
  13. package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
  14. package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
  15. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
  16. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
  17. package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
  18. package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
  19. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
  20. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
  21. package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
  22. package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
  23. package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
  24. package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
  25. package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
  26. package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
  27. package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
  28. package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
  29. package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
  30. package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
  31. package/dist/BackendDrivers/index.d.ts +5 -0
  32. package/dist/BackendDrivers/index.d.ts.map +1 -0
  33. package/dist/ChangeManager.d.ts +24 -0
  34. package/dist/ChangeManager.d.ts.map +1 -0
  35. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
  36. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
  37. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
  38. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
  39. package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
  40. package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
  41. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
  42. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
  43. package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
  44. package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
  45. package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
  46. package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
  47. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
  48. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
  49. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
  50. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
  51. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
  52. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
  53. package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
  54. package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
  55. package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
  56. package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
  57. package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
  58. package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
  59. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
  60. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
  61. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
  62. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
  63. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
  64. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
  65. package/dist/FeatureDetailsWidget/index.d.ts +5 -0
  66. package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
  67. package/dist/FeatureDetailsWidget/model.d.ts +123 -0
  68. package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
  69. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
  70. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
  71. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
  72. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
  73. package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
  74. package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
  75. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
  76. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
  77. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
  78. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  79. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
  80. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
  81. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
  82. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
  83. package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
  84. package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
  85. package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
  86. package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
  87. package/dist/LinearApolloDisplay/index.d.ts +3 -0
  88. package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
  89. package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
  90. package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
  91. package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
  92. package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
  93. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
  94. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
  95. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
  96. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  97. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
  98. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
  99. package/dist/LinearApolloDisplay/types.d.ts +2 -0
  100. package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
  101. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
  102. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
  103. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
  104. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
  105. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
  106. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
  107. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
  108. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
  109. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
  110. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
  111. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
  112. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
  113. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
  114. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
  115. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
  116. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
  117. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
  118. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
  119. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
  120. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
  121. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
  122. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
  123. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
  124. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  125. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
  126. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
  127. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
  128. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
  129. package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
  130. package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
  131. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
  132. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
  133. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
  134. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
  135. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
  136. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
  137. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
  138. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  139. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
  140. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
  141. package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
  142. package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
  143. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
  144. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
  145. package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
  146. package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
  147. package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
  148. package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
  149. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
  150. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
  151. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
  152. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
  153. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
  154. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
  155. package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
  156. package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
  157. package/dist/OntologyManager/util.d.ts +4 -0
  158. package/dist/OntologyManager/util.d.ts.map +1 -0
  159. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
  160. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
  161. package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
  162. package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
  163. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
  164. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
  165. package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
  166. package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
  167. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
  168. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
  169. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
  170. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
  171. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
  172. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
  173. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
  174. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
  175. package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
  176. package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
  177. package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
  178. package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
  179. package/dist/TabularEditor/index.d.ts +3 -0
  180. package/dist/TabularEditor/index.d.ts.map +1 -0
  181. package/dist/TabularEditor/model.d.ts +17 -0
  182. package/dist/TabularEditor/model.d.ts.map +1 -0
  183. package/dist/TabularEditor/types.d.ts +4 -0
  184. package/dist/TabularEditor/types.d.ts.map +1 -0
  185. package/dist/components/AddAssembly.d.ts +10 -0
  186. package/dist/components/AddAssembly.d.ts.map +1 -0
  187. package/dist/components/AddAssemblyAliases.d.ts +10 -0
  188. package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
  189. package/dist/components/AddChildFeature.d.ts +13 -0
  190. package/dist/components/AddChildFeature.d.ts.map +1 -0
  191. package/dist/components/AddFeature.d.ts +12 -0
  192. package/dist/components/AddFeature.d.ts.map +1 -0
  193. package/dist/components/AddRefSeqAliases.d.ts +10 -0
  194. package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
  195. package/dist/components/CopyFeature.d.ts +13 -0
  196. package/dist/components/CopyFeature.d.ts.map +1 -0
  197. package/dist/components/CreateApolloAnnotation.d.ts +20 -0
  198. package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
  199. package/dist/components/DeleteAssembly.d.ts +10 -0
  200. package/dist/components/DeleteAssembly.d.ts.map +1 -0
  201. package/dist/components/DeleteFeature.d.ts +15 -0
  202. package/dist/components/DeleteFeature.d.ts.map +1 -0
  203. package/dist/components/Dialog.d.ts +7 -0
  204. package/dist/components/Dialog.d.ts.map +1 -0
  205. package/dist/components/DownloadGFF3.d.ts +8 -0
  206. package/dist/components/DownloadGFF3.d.ts.map +1 -0
  207. package/dist/components/DuplicateTranscript.d.ts +15 -0
  208. package/dist/components/DuplicateTranscript.d.ts.map +1 -0
  209. package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
  210. package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
  211. package/dist/components/FilterFeatures.d.ts +10 -0
  212. package/dist/components/FilterFeatures.d.ts.map +1 -0
  213. package/dist/components/FilterTranscripts.d.ts +10 -0
  214. package/dist/components/FilterTranscripts.d.ts.map +1 -0
  215. package/dist/components/ImportFeatures.d.ts +10 -0
  216. package/dist/components/ImportFeatures.d.ts.map +1 -0
  217. package/dist/components/LogOut.d.ts +8 -0
  218. package/dist/components/LogOut.d.ts.map +1 -0
  219. package/dist/components/ManageChecks.d.ts +8 -0
  220. package/dist/components/ManageChecks.d.ts.map +1 -0
  221. package/dist/components/ManageUsers.d.ts +10 -0
  222. package/dist/components/ManageUsers.d.ts.map +1 -0
  223. package/dist/components/MergeExons.d.ts +15 -0
  224. package/dist/components/MergeExons.d.ts.map +1 -0
  225. package/dist/components/MergeTranscripts.d.ts +15 -0
  226. package/dist/components/MergeTranscripts.d.ts.map +1 -0
  227. package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
  228. package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
  229. package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
  230. package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
  231. package/dist/components/OpenLocalFile.d.ts +15 -0
  232. package/dist/components/OpenLocalFile.d.ts.map +1 -0
  233. package/dist/components/SplitExon.d.ts +15 -0
  234. package/dist/components/SplitExon.d.ts.map +1 -0
  235. package/dist/components/ViewChangeLog.d.ts +8 -0
  236. package/dist/components/ViewChangeLog.d.ts.map +1 -0
  237. package/dist/components/ViewCheckResults.d.ts +8 -0
  238. package/dist/components/ViewCheckResults.d.ts.map +1 -0
  239. package/dist/components/index.d.ts +21 -0
  240. package/dist/components/index.d.ts.map +1 -0
  241. package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
  242. package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
  243. package/dist/extensions/annotationFromPileup.d.ts +3 -0
  244. package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
  245. package/dist/extensions/index.d.ts +3 -0
  246. package/dist/extensions/index.d.ts.map +1 -0
  247. package/dist/index.esm.js +843 -1330
  248. package/dist/index.esm.js.map +1 -1
  249. package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
  250. package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
  251. package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
  252. package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
  253. package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63619
  254. package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
  255. package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
  256. package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
  257. package/dist/makeDisplayComponent.d.ts +9 -0
  258. package/dist/makeDisplayComponent.d.ts.map +1 -0
  259. package/dist/menus/index.d.ts +2 -0
  260. package/dist/menus/index.d.ts.map +1 -0
  261. package/dist/menus/topLevelMenu.d.ts +3 -0
  262. package/dist/menus/topLevelMenu.d.ts.map +1 -0
  263. package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
  264. package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
  265. package/dist/session/index.d.ts +2 -0
  266. package/dist/session/index.d.ts.map +1 -0
  267. package/dist/types.d.ts +10 -0
  268. package/dist/types.d.ts.map +1 -0
  269. package/dist/util/annotationFeatureUtils.d.ts +7 -0
  270. package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
  271. package/dist/util/copyToClipboard.d.ts +2 -0
  272. package/dist/util/copyToClipboard.d.ts.map +1 -0
  273. package/dist/util/glyphUtils.d.ts +31 -0
  274. package/dist/util/glyphUtils.d.ts.map +1 -0
  275. package/dist/util/index.d.ts +10 -0
  276. package/dist/util/index.d.ts.map +1 -0
  277. package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
  278. package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
  279. package/dist/util/mouseEventsUtils.d.ts +25 -0
  280. package/dist/util/mouseEventsUtils.d.ts.map +1 -0
  281. package/package.json +48 -25
  282. package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
  283. package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
  284. package/src/ApolloInternetAccount/configSchema.ts +1 -1
  285. package/src/ApolloInternetAccount/model.ts +13 -6
  286. package/src/ApolloJobModel.ts +3 -3
  287. package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
  288. package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
  289. package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
  290. package/src/BackendDrivers/BackendDriver.ts +8 -8
  291. package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
  292. package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
  293. package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
  294. package/src/ChangeManager.ts +8 -3
  295. package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
  296. package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
  297. package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
  298. package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
  299. package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
  300. package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
  301. package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
  302. package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
  303. package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
  304. package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
  305. package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
  306. package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
  307. package/src/FeatureDetailsWidget/model.ts +3 -3
  308. package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
  309. package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
  310. package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
  311. package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
  312. package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
  313. package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
  314. package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
  315. package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
  316. package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
  317. package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
  318. package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
  319. package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
  320. package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
  321. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
  322. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
  323. package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
  324. package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
  325. package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
  326. package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
  327. package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
  328. package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
  329. package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
  330. package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
  331. package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
  332. package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
  333. package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
  334. package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
  335. package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
  336. package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
  337. package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
  338. package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
  339. package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
  340. package/src/OntologyManager/index.ts +4 -4
  341. package/src/OntologyManager/util.ts +1 -1
  342. package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
  343. package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
  344. package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
  345. package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
  346. package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
  347. package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
  348. package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
  349. package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
  350. package/src/TabularEditor/TabularEditorPane.tsx +1 -1
  351. package/src/TabularEditor/model.ts +2 -2
  352. package/src/TabularEditor/types.ts +2 -2
  353. package/src/components/AddAssembly.tsx +61 -42
  354. package/src/components/AddAssemblyAliases.tsx +5 -5
  355. package/src/components/AddChildFeature.tsx +3 -3
  356. package/src/components/AddFeature.tsx +4 -4
  357. package/src/components/AddRefSeqAliases.tsx +7 -7
  358. package/src/components/CopyFeature.tsx +8 -8
  359. package/src/components/CreateApolloAnnotation.tsx +5 -5
  360. package/src/components/DeleteAssembly.tsx +8 -8
  361. package/src/components/DeleteFeature.tsx +4 -4
  362. package/src/components/Dialog.tsx +1 -1
  363. package/src/components/DownloadGFF3.tsx +8 -8
  364. package/src/components/DuplicateTranscript.tsx +132 -0
  365. package/src/components/FilterFeatures.tsx +1 -1
  366. package/src/components/FilterTranscripts.tsx +1 -1
  367. package/src/components/ImportFeatures.tsx +51 -33
  368. package/src/components/LogOut.tsx +4 -4
  369. package/src/components/ManageChecks.tsx +8 -8
  370. package/src/components/ManageUsers.tsx +18 -26
  371. package/src/components/MergeExons.tsx +4 -4
  372. package/src/components/MergeTranscripts.tsx +4 -4
  373. package/src/components/OntologyTermAutocomplete.tsx +14 -4
  374. package/src/components/OntologyTermMultiSelect.tsx +12 -5
  375. package/src/components/OpenLocalFile.tsx +2 -2
  376. package/src/components/SplitExon.tsx +6 -6
  377. package/src/components/ViewChangeLog.tsx +8 -8
  378. package/src/components/ViewCheckResults.tsx +4 -4
  379. package/src/components/index.ts +1 -0
  380. package/src/config.ts +1 -1
  381. package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
  382. package/src/extensions/annotationFromPileup.ts +8 -6
  383. package/src/index.ts +25 -1
  384. package/src/makeDisplayComponent.tsx +8 -5
  385. package/src/menus/topLevelMenu.ts +4 -4
  386. package/src/menus/topLevelMenuAdmin.ts +4 -4
  387. package/src/session/ClientDataStore.ts +20 -15
  388. package/src/session/session.ts +30 -19
  389. package/src/types.ts +10 -4
  390. package/src/util/annotationFeatureUtils.ts +1 -1
  391. package/src/util/displayUtils.ts +3 -3
  392. package/src/util/glyphUtils.ts +10 -10
  393. package/src/util/index.ts +4 -4
  394. package/src/util/loadAssemblyIntoClient.ts +4 -4
  395. package/src/util/mouseEventsUtils.ts +2 -2
@@ -0,0 +1,107 @@
1
+ /** TS types for OBO Graph JSON (https://github.com/geneontology/obographs) */
2
+ export interface GraphDocument {
3
+ '@context'?: unknown;
4
+ meta?: Meta;
5
+ graphs?: Graph[];
6
+ [k: string]: unknown;
7
+ }
8
+ export interface Meta {
9
+ definition?: MetaDefinitionPropertyValue;
10
+ comments?: string[];
11
+ subsets?: string[];
12
+ synonyms?: MetaSynonymPropertyValue[];
13
+ xrefs?: MetaXrefPropertyValue[];
14
+ basicPropertyValues?: MetaBasicPropertyValue[];
15
+ version?: string;
16
+ deprecated?: boolean;
17
+ [k: string]: unknown;
18
+ }
19
+ export interface MetaDefinitionPropertyValue {
20
+ pred?: string;
21
+ val?: string;
22
+ xrefs?: string[];
23
+ meta?: Meta;
24
+ [k: string]: unknown;
25
+ }
26
+ export interface MetaSynonymPropertyValue {
27
+ synonymType?: string;
28
+ pred?: string;
29
+ val?: string;
30
+ xrefs?: string[];
31
+ meta?: Meta;
32
+ [k: string]: unknown;
33
+ }
34
+ export interface MetaXrefPropertyValue {
35
+ lbl?: string;
36
+ pred?: string;
37
+ val?: string;
38
+ xrefs?: string[];
39
+ meta?: Meta;
40
+ [k: string]: unknown;
41
+ }
42
+ export interface MetaBasicPropertyValue {
43
+ pred?: string;
44
+ val?: string;
45
+ xrefs?: string[];
46
+ meta?: Meta;
47
+ [k: string]: unknown;
48
+ }
49
+ export interface Graph {
50
+ id?: string;
51
+ lbl?: string;
52
+ meta?: Meta;
53
+ nodes?: Node[];
54
+ edges?: Edge[];
55
+ equivalentNodesSets?: AxiomEquivalentNodesSet[];
56
+ logicalDefinitionAxioms?: LogicalDefinitionAxiom[];
57
+ domainRangeAxioms?: DomainRangeAxiom[];
58
+ propertyChainAxioms?: PropertyChainAxiom[];
59
+ [k: string]: unknown;
60
+ }
61
+ export interface Node {
62
+ id?: string;
63
+ lbl?: string;
64
+ type?: 'CLASS' | 'INDIVIDUAL' | 'PROPERTY';
65
+ meta?: Meta;
66
+ [k: string]: unknown;
67
+ }
68
+ export interface Edge {
69
+ sub?: string;
70
+ pred?: string;
71
+ obj?: string;
72
+ meta?: Meta;
73
+ [k: string]: unknown;
74
+ }
75
+ export interface AxiomEquivalentNodesSet {
76
+ representativeNodeId?: string;
77
+ nodeIds?: string[];
78
+ meta?: Meta;
79
+ [k: string]: unknown;
80
+ }
81
+ export interface LogicalDefinitionAxiom {
82
+ definedClassId?: string;
83
+ genusIds?: string[];
84
+ restrictions?: AxiomExistentialRestrictionExpression[];
85
+ meta?: Meta;
86
+ [k: string]: unknown;
87
+ }
88
+ export interface AxiomExistentialRestrictionExpression {
89
+ propertyId?: string;
90
+ fillerId?: string;
91
+ [k: string]: unknown;
92
+ }
93
+ export interface DomainRangeAxiom {
94
+ predicateId?: string;
95
+ domainClassIds?: string[];
96
+ rangeClassIds?: string[];
97
+ allValuesFromEdges?: Edge[];
98
+ meta?: Meta;
99
+ [k: string]: unknown;
100
+ }
101
+ export interface PropertyChainAxiom {
102
+ predicateId?: string;
103
+ chainPredicateIds?: string[];
104
+ meta?: Meta;
105
+ [k: string]: unknown;
106
+ }
107
+ //# sourceMappingURL=obo-graph-json-schema.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"obo-graph-json-schema.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/obo-graph-json-schema.ts"],"names":[],"mappings":"AAAA,8EAA8E;AAE9E,MAAM,WAAW,aAAa;IAC5B,UAAU,CAAC,EAAE,OAAO,CAAA;IACpB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,MAAM,CAAC,EAAE,KAAK,EAAE,CAAA;IAChB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AAED,MAAM,WAAW,IAAI;IACnB,UAAU,CAAC,EAAE,2BAA2B,CAAA;IACxC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAA;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;IAClB,QAAQ,CAAC,EAAE,wBAAwB,EAAE,CAAA;IACrC,KAAK,CAAC,EAAE,qBAAqB,EAAE,CAAA;IAC/B,mBAAmB,CAAC,EAAE,sBAAsB,EAAE,CAAA;IAC9C,OAAO,CAAC,EAAE,MAAM,CAAA;IAChB,UAAU,CAAC,EAAE,OAAO,CAAA;IACpB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,2BAA2B;IAC1C,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,wBAAwB;IACvC,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,qBAAqB;IACpC,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,sBAAsB;IACrC,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AAED,MAAM,WAAW,KAAK;IACpB,EAAE,CAAC,EAAE,MAAM,CAAA;IACX,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,KAAK,CAAC,EAAE,IAAI,EAAE,CAAA;IACd,KAAK,CAAC,EAAE,IAAI,EAAE,CAAA;IAEd,mBAAmB,CAAC,EAAE,uBAAuB,EAAE,CAAA;IAC/C,uBAAuB,CAAC,EAAE,sBAAsB,EAAE,CAAA;IAClD,iBAAiB,CAAC,EAAE,gBAAgB,EAAE,CAAA;IACtC,mBAAmB,CAAC,EAAE,kBAAkB,EAAE,CAAA;IAC1C,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,IAAI;IACnB,EAAE,CAAC,EAAE,MAAM,CAAA;IACX,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,OAAO,GAAG,YAAY,GAAG,UAAU,CAAA;IAC1C,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,IAAI;IACnB,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,uBAAuB;IACtC,oBAAoB,CAAC,EAAE,MAAM,CAAA;IAC7B,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;IAClB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,sBAAsB;IACrC,cAAc,CAAC,EAAE,MAAM,CAAA;IACvB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAA;IACnB,YAAY,CAAC,EAAE,qCAAqC,EAAE,CAAA;IACtD,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,qCAAqC;IACpD,UAAU,CAAC,EAAE,MAAM,CAAA;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAA;IACjB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,gBAAgB;IAC/B,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,cAAc,CAAC,EAAE,MAAM,EAAE,CAAA;IACzB,aAAa,CAAC,EAAE,MAAM,EAAE,CAAA;IACxB,kBAAkB,CAAC,EAAE,IAAI,EAAE,CAAA;IAC3B,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,kBAAkB;IACjC,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAA;IAC5B,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB"}
@@ -0,0 +1,20 @@
1
+ /**
2
+ * This file contains stuff dealing with IRI prefixes used in ontologies.
3
+ *
4
+ * ```
5
+ * const prefixes = new Map(['GO:', 'http://long.url/GO_'])
6
+ *
7
+ * applyPrefixes('http://long.url/GO_1234345') // returns 'GO:1234345'
8
+ *
9
+ * expandPrefixes('GO:1234345') // returns 'http://long.url/GO_1234345'
10
+ * ```
11
+ */
12
+ /**
13
+ * compact the given URI using the given prefixes
14
+ */
15
+ export declare function applyPrefixes(uri: string, prefixes: Map<string | number, string>): string;
16
+ /**
17
+ * expand the given compacted URI using given prefixes
18
+ */
19
+ export declare function expandPrefixes(uri: string, prefixes: Map<string | number, string>): string;
20
+ //# sourceMappingURL=prefixes.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"prefixes.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/prefixes.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH;;GAEG;AACH,wBAAgB,aAAa,CAC3B,GAAG,EAAE,MAAM,EACX,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,MAAM,EAAE,MAAM,CAAC,UAQvC;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,GAAG,EAAE,MAAM,EACX,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,MAAM,EAAE,MAAM,CAAC,UAQvC"}
@@ -0,0 +1,4 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type OntologyStore from './OntologyStore';
3
+ export declare function fetchValidDescendantTerms(parentFeature: AnnotationFeature | undefined, ontologyStore: OntologyStore, _signal: AbortSignal): Promise<import(".").OntologyClass[] | undefined>;
4
+ //# sourceMappingURL=util.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../src/OntologyManager/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAE/D,OAAO,KAAK,aAAa,MAAM,iBAAiB,CAAA;AAIhD,wBAAsB,yBAAyB,CAC7C,aAAa,EAAE,iBAAiB,GAAG,SAAS,EAC5C,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,WAAW,oDAwBrB"}
@@ -0,0 +1,6 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../../ChangeManager';
3
+ export declare function handleFeatureTypeChange(changeManager: ChangeManager, feature: AnnotationFeature, oldType: string, newType: string): Promise<void>;
4
+ export declare function handleFeatureStartChange(changeManager: ChangeManager, feature: AnnotationFeature, oldStart: number, newStart: number): Promise<void>;
5
+ export declare function handleFeatureEndChange(changeManager: ChangeManager, feature: AnnotationFeature, oldEnd: number, newEnd: number): Promise<void>;
6
+ //# sourceMappingURL=ChangeHandling.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ChangeHandling.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/ChangeHandling.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAO/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAExD,wBAAgB,uBAAuB,CACrC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,iBAYhB;AAED,wBAAgB,wBAAwB,CACtC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,iBAajB;AAED,wBAAgB,sBAAsB,CACpC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,iBAYf"}
@@ -0,0 +1,13 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { DisplayStateModel } from '../types';
3
+ import type { ContextMenuState } from './HybridGrid';
4
+ export declare const Feature: ({ depth, feature, isHovered, isSelected, model: displayState, selectedFeatureClass, setContextMenu, }: {
5
+ model: DisplayStateModel;
6
+ feature: AnnotationFeature;
7
+ depth: number;
8
+ isHovered: boolean;
9
+ isSelected: boolean;
10
+ selectedFeatureClass: string;
11
+ setContextMenu: (menu: ContextMenuState) => void;
12
+ }) => import("react/jsx-runtime").JSX.Element;
13
+ //# sourceMappingURL=Feature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Feature.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/Feature.tsx"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAU/D,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAQjD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAA;AA2EpD,eAAO,MAAM,OAAO,0GAQjB;IACD,KAAK,EAAE,iBAAiB,CAAA;IACxB,OAAO,EAAE,iBAAiB,CAAA;IAC1B,KAAK,EAAE,MAAM,CAAA;IACb,SAAS,EAAE,OAAO,CAAA;IAClB,UAAU,EAAE,OAAO,CAAA;IACnB,oBAAoB,EAAE,MAAM,CAAA;IAC5B,cAAc,EAAE,CAAC,IAAI,EAAE,gBAAgB,KAAK,IAAI,CAAA;CACjD,4CAwKC,CAAA"}
@@ -0,0 +1,6 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ export declare const FeatureAttributes: ({ feature, filterText, }: {
3
+ feature: AnnotationFeature;
4
+ filterText: string;
5
+ }) => import("react/jsx-runtime").JSX.Element;
6
+ //# sourceMappingURL=FeatureAttributes.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FeatureAttributes.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/FeatureAttributes.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAO/D,eAAO,MAAM,iBAAiB,6BAG3B;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,UAAU,EAAE,MAAM,CAAA;CACnB,4CAqBC,CAAA"}
@@ -0,0 +1,6 @@
1
+ declare const Highlight: ({ highlight, text, }: {
2
+ text: string;
3
+ highlight: string;
4
+ }) => import("react/jsx-runtime").JSX.Element;
5
+ export default Highlight;
6
+ //# sourceMappingURL=Highlight.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Highlight.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/Highlight.tsx"],"names":[],"mappings":"AASA,QAAA,MAAM,SAAS,yBAGZ;IACD,IAAI,EAAE,MAAM,CAAA;IACZ,SAAS,EAAE,MAAM,CAAA;CAClB,4CAsBA,CAAA;AAED,eAAe,SAAS,CAAA"}
@@ -0,0 +1,14 @@
1
+ import { type MenuItem } from '@jbrowse/core/ui';
2
+ import type { DisplayStateModel } from '../types';
3
+ export type ContextMenuState = null | {
4
+ position: {
5
+ top: number;
6
+ left: number;
7
+ };
8
+ items: MenuItem[];
9
+ };
10
+ declare const HybridGrid: ({ model, }: {
11
+ model: DisplayStateModel;
12
+ }) => import("react/jsx-runtime").JSX.Element;
13
+ export default HybridGrid;
14
+ //# sourceMappingURL=HybridGrid.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"HybridGrid.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/HybridGrid.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAQ,KAAK,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAMtD,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAuBjD,MAAM,MAAM,gBAAgB,GAAG,IAAI,GAAG;IACpC,QAAQ,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAA;IACvC,KAAK,EAAE,QAAQ,EAAE,CAAA;CAClB,CAAA;AAED,QAAA,MAAM,UAAU,eAEb;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,4CAmGC,CAAA;AAEF,eAAe,UAAU,CAAA"}
@@ -0,0 +1,8 @@
1
+ interface NumberCellProps {
2
+ initialValue: number;
3
+ notifyError(error: Error): void;
4
+ onChangeCommitted(newValue: number): Promise<void>;
5
+ }
6
+ export declare const NumberCell: ({ initialValue, notifyError, onChangeCommitted, }: NumberCellProps) => import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=NumberCell.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"NumberCell.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/NumberCell.tsx"],"names":[],"mappings":"AAuBA,UAAU,eAAe;IACvB,YAAY,EAAE,MAAM,CAAA;IACpB,WAAW,CAAC,KAAK,EAAE,KAAK,GAAG,IAAI,CAAA;IAC/B,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAA;CACnD;AAED,eAAO,MAAM,UAAU,sDAIpB,eAAe,4CAsDhB,CAAA"}
@@ -0,0 +1,5 @@
1
+ import type { DisplayStateModel } from '../types';
2
+ export declare const ToolBar: ({ model: displayState, }: {
3
+ model: DisplayStateModel;
4
+ }) => import("react/jsx-runtime").JSX.Element;
5
+ //# sourceMappingURL=ToolBar.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ToolBar.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/ToolBar.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAcjD,eAAO,MAAM,OAAO,6BAEjB;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,4CAyCC,CAAA"}
@@ -0,0 +1,11 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { MenuItem } from '@jbrowse/core/ui';
3
+ import type { ChangeManager } from '../../ChangeManager';
4
+ import type { ApolloSessionModel } from '../../session';
5
+ export declare function featureContextMenuItems(feature: AnnotationFeature | undefined, region: {
6
+ assemblyName: string;
7
+ refName: string;
8
+ start: number;
9
+ end: number;
10
+ }, getAssemblyId: (assemblyName: string) => string, selectedFeature: AnnotationFeature | undefined, setSelectedFeature: (f: AnnotationFeature | undefined) => void, session: ApolloSessionModel, changeManager: ChangeManager, filteredTranscripts: string[], updateFilteredTranscripts: (forms: string[]) => void): MenuItem[];
11
+ //# sourceMappingURL=featureContextMenuItems.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"featureContextMenuItems.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/featureContextMenuItems.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAOhD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAUxD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAA;AAGvD,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,iBAAiB,GAAG,SAAS,EACtC,MAAM,EAAE;IAAE,YAAY,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EAC7E,aAAa,EAAE,CAAC,YAAY,EAAE,MAAM,KAAK,MAAM,EAC/C,eAAe,EAAE,iBAAiB,GAAG,SAAS,EAC9C,kBAAkB,EAAE,CAAC,CAAC,EAAE,iBAAiB,GAAG,SAAS,KAAK,IAAI,EAC9D,OAAO,EAAE,kBAAkB,EAC3B,aAAa,EAAE,aAAa,EAC5B,mBAAmB,EAAE,MAAM,EAAE,EAC7B,yBAAyB,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,cAkOrD"}
@@ -0,0 +1,2 @@
1
+ export { default } from './HybridGrid';
2
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}
@@ -0,0 +1,5 @@
1
+ import type { DisplayStateModel } from './types';
2
+ export declare const TabularEditorPane: ({ model: displayState, }: {
3
+ model: DisplayStateModel;
4
+ }) => import("react/jsx-runtime").JSX.Element | null;
5
+ //# sourceMappingURL=TabularEditorPane.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"TabularEditorPane.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/TabularEditorPane.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,SAAS,CAAA;AAMhD,eAAO,MAAM,iBAAiB,6BAE3B;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,mDAkBC,CAAA"}
@@ -0,0 +1,3 @@
1
+ export { TabularEditorPane } from './TabularEditorPane';
2
+ export { TabularEditorStateModelType } from './model';
3
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAA;AAEvD,OAAO,EAAE,2BAA2B,EAAE,MAAM,SAAS,CAAA"}
@@ -0,0 +1,17 @@
1
+ import { type Instance } from '@jbrowse/mobx-state-tree';
2
+ export declare const TabularEditorStateModelType: import("@jbrowse/mobx-state-tree").IModelType<{
3
+ isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
4
+ featureCollapsed: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
5
+ filterText: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
6
+ }, {
7
+ setFeatureCollapsed(id: string, state: boolean): void;
8
+ setFilterText(text: string): void;
9
+ clearFilterText(): void;
10
+ collapseAllFeatures(): void;
11
+ togglePane(): void;
12
+ hidePane(): void;
13
+ showPane(): void;
14
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
15
+ export interface TabularEditorStateModel extends Instance<typeof TabularEditorStateModelType> {
16
+ }
17
+ //# sourceMappingURL=model.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,QAAQ,EAAoB,MAAM,0BAA0B,CAAA;AAI1E,eAAO,MAAM,2BAA2B;;;;;4BAOZ,MAAM,SAAS,OAAO;wBAG1B,MAAM;;;;;;wGAyBzB,CAAA;AAKL,MAAM,WAAW,uBACf,SAAQ,QAAQ,CAAC,OAAO,2BAA2B,CAAC;CAAG"}
@@ -0,0 +1,4 @@
1
+ import type { LinearApolloDisplay } from '../LinearApolloDisplay/stateModel';
2
+ import type { LinearApolloSixFrameDisplay } from '../LinearApolloSixFrameDisplay/stateModel';
3
+ export type DisplayStateModel = LinearApolloDisplay | LinearApolloSixFrameDisplay;
4
+ //# sourceMappingURL=types.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mCAAmC,CAAA;AAC5E,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,2CAA2C,CAAA;AAE5F,MAAM,MAAM,iBAAiB,GACzB,mBAAmB,GACnB,2BAA2B,CAAA"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface AddAssemblyProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare function AddAssembly({ changeManager, handleClose, session, }: AddAssemblyProps): import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=AddAssembly.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"AddAssembly.d.ts","sourceRoot":"","sources":["../../src/components/AddAssembly.tsx"],"names":[],"mappings":"AA8CA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAgED,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,gBAAgB,2CA+qBlB"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface AddAssemblyAliasProps {
4
+ session: ApolloSessionModel;
5
+ handleClose: () => void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare function AddAssemblyAliases({ changeManager, handleClose, session, }: AddAssemblyAliasProps): import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=AddAssemblyAliases.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"AddAssemblyAliases.d.ts","sourceRoot":"","sources":["../../src/components/AddAssemblyAliases.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,EAAE,MAAM,IAAI,CAAA;IACvB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAuBD,wBAAgB,kBAAkB,CAAC,EACjC,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,qBAAqB,2CAoEvB"}
@@ -0,0 +1,13 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface AddChildFeatureProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ }
11
+ export declare function AddChildFeature({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, }: AddChildFeatureProps): import("react/jsx-runtime").JSX.Element;
12
+ export {};
13
+ //# sourceMappingURL=AddChildFeature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"AddChildFeature.d.ts","sourceRoot":"","sources":["../../src/components/AddChildFeature.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAY/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAIrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,oBAAoB;IAC5B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,eAAe,CAAC,EAC9B,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,GACd,EAAE,oBAAoB,2CAsItB"}
@@ -0,0 +1,12 @@
1
+ import type { Region } from '@jbrowse/core/util/types';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface AddFeatureProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ region: Region;
8
+ changeManager: ChangeManager;
9
+ }
10
+ export declare function AddFeature({ changeManager, handleClose, region, session, }: AddFeatureProps): import("react/jsx-runtime").JSX.Element;
11
+ export {};
12
+ //# sourceMappingURL=AddFeature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"AddFeature.d.ts","sourceRoot":"","sources":["../../src/components/AddFeature.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,0BAA0B,CAAA;AAwBtD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAErD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,eAAe;IACvB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,MAAM,EAAE,MAAM,CAAA;IACd,aAAa,EAAE,aAAa,CAAA;CAC7B;AAiDD,wBAAgB,UAAU,CAAC,EACzB,aAAa,EACb,WAAW,EACX,MAAM,EACN,OAAO,GACR,EAAE,eAAe,2CAiSjB"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface AddChildFeatureProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare const AddRefSeqAliases: ({ changeManager, handleClose, session, }: AddChildFeatureProps) => import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=AddRefSeqAliases.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"AddRefSeqAliases.d.ts","sourceRoot":"","sources":["../../src/components/AddRefSeqAliases.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AASpD,UAAU,oBAAoB;IAC5B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAOD,eAAO,MAAM,gBAAgB,6CAI1B,oBAAoB,4CAmPrB,CAAA"}
@@ -0,0 +1,13 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface CopyFeatureProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ }
11
+ export declare function CopyFeature({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, }: CopyFeatureProps): import("react/jsx-runtime").JSX.Element;
12
+ export {};
13
+ //# sourceMappingURL=CopyFeature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"CopyFeature.d.ts","sourceRoot":"","sources":["../../src/components/CopyFeature.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAmB/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAwCD,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,GACd,EAAE,gBAAgB,2CA4OlB"}
@@ -0,0 +1,20 @@
1
+ import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
2
+ import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
3
+ import type { AbstractSessionModel } from '@jbrowse/core/util';
4
+ interface CreateApolloAnnotationProps {
5
+ session: AbstractSessionModel;
6
+ handleClose(): void;
7
+ annotationFeature: AnnotationFeatureSnapshot;
8
+ assembly: Assembly;
9
+ refSeqId: string;
10
+ region: {
11
+ start: number;
12
+ end: number;
13
+ };
14
+ }
15
+ export declare function getFeatureName(feature: AnnotationFeatureSnapshot): string;
16
+ export declare function getGeneNameOrId(feature: AnnotationFeatureSnapshot): string;
17
+ export declare function getFeatureId(feature: AnnotationFeatureSnapshot): string;
18
+ export declare function CreateApolloAnnotation({ annotationFeature, assembly, handleClose, refSeqId, session, region, }: CreateApolloAnnotationProps): import("react/jsx-runtime").JSX.Element;
19
+ export {};
20
+ //# sourceMappingURL=CreateApolloAnnotation.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"CreateApolloAnnotation.d.ts","sourceRoot":"","sources":["../../src/components/CreateApolloAnnotation.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAMvE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AACtE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAwB9D,UAAU,2BAA2B;IACnC,OAAO,EAAE,oBAAoB,CAAA;IAC7B,WAAW,IAAI,IAAI,CAAA;IACnB,iBAAiB,EAAE,yBAAyB,CAAA;IAC5C,QAAQ,EAAE,QAAQ,CAAA;IAClB,QAAQ,EAAE,MAAM,CAAA;IAChB,MAAM,EAAE;QACN,KAAK,EAAE,MAAM,CAAA;QACb,GAAG,EAAE,MAAM,CAAA;KACZ,CAAA;CACF;AAuDD,wBAAgB,cAAc,CAAC,OAAO,EAAE,yBAAyB,UAUhE;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,yBAAyB,UAUjE;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,yBAAyB,UAiB9D;AAcD,wBAAgB,sBAAsB,CAAC,EACrC,iBAAiB,EACjB,QAAQ,EACR,WAAW,EACX,QAAQ,EACR,OAAO,EACP,MAAM,GACP,EAAE,2BAA2B,2CA6b7B"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface DeleteAssemblyProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare function DeleteAssembly({ changeManager, handleClose, session, }: DeleteAssemblyProps): import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=DeleteAssembly.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"DeleteAssembly.d.ts","sourceRoot":"","sources":["../../src/components/DeleteAssembly.tsx"],"names":[],"mappings":"AAuBA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,cAAc,CAAC,EAC7B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,mBAAmB,2CA+IrB"}
@@ -0,0 +1,15 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface DeleteFeatureProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ selectedFeature?: AnnotationFeature;
11
+ setSelectedFeature(feature?: AnnotationFeature): void;
12
+ }
13
+ export declare function DeleteFeature({ changeManager, handleClose, selectedFeature, session, setSelectedFeature, sourceAssemblyId, sourceFeature, }: DeleteFeatureProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=DeleteFeature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"DeleteFeature.d.ts","sourceRoot":"","sources":["../../src/components/DeleteFeature.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAe/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAYpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AAwDD,wBAAgB,aAAa,CAAC,EAC5B,aAAa,EACb,WAAW,EACX,eAAe,EACf,OAAO,EACP,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,kBAAkB,2CAiVpB"}
@@ -0,0 +1,7 @@
1
+ import { type DialogProps } from '@mui/material';
2
+ interface Props extends DialogProps {
3
+ handleClose(): void;
4
+ }
5
+ export declare const Dialog: (props: Props) => import("react/jsx-runtime").JSX.Element;
6
+ export {};
7
+ //# sourceMappingURL=Dialog.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Dialog.d.ts","sourceRoot":"","sources":["../../src/components/Dialog.tsx"],"names":[],"mappings":"AAIA,OAAO,EAAE,KAAK,WAAW,EAA2B,MAAM,eAAe,CAAA;AAkBzE,UAAU,KAAM,SAAQ,WAAW;IACjC,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,eAAO,MAAM,MAAM,UAA0C,KAAK,4CAqBhE,CAAA"}
@@ -0,0 +1,8 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface DownloadGFF3Props {
3
+ session: ApolloSessionModel;
4
+ handleClose(): void;
5
+ }
6
+ export declare function DownloadGFF3({ handleClose, session }: DownloadGFF3Props): import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=DownloadGFF3.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"DownloadGFF3.d.ts","sourceRoot":"","sources":["../../src/components/DownloadGFF3.tsx"],"names":[],"mappings":"AA+BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,iBAAiB;IACzB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,YAAY,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,iBAAiB,2CAwMvE"}
@@ -0,0 +1,15 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface DuplicateTranscriptProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ selectedFeature?: AnnotationFeature;
11
+ setSelectedFeature(feature?: AnnotationFeature): void;
12
+ }
13
+ export declare function DuplicateTranscript({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, setSelectedFeature, }: DuplicateTranscriptProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=DuplicateTranscript.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"DuplicateTranscript.d.ts","sourceRoot":"","sources":["../../src/components/DuplicateTranscript.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAa/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,wBAAwB;IAChC,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AAED,wBAAgB,mBAAmB,CAAC,EAClC,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,EACb,kBAAkB,GACnB,EAAE,wBAAwB,2CA4F1B"}
@@ -0,0 +1,11 @@
1
+ declare const EditZoomThresholdDialog: ({ model, handleClose, }: {
2
+ model: {
3
+ zoomThresholdSetting: number;
4
+ setZoomThresholdSetting: (a: {
5
+ zoomThreshold: number;
6
+ }) => void;
7
+ };
8
+ handleClose: () => void;
9
+ }) => import("react/jsx-runtime").JSX.Element;
10
+ export default EditZoomThresholdDialog;
11
+ //# sourceMappingURL=EditZoomThresholdDialog.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"EditZoomThresholdDialog.d.ts","sourceRoot":"","sources":["../../src/components/EditZoomThresholdDialog.tsx"],"names":[],"mappings":"AAWA,QAAA,MAAM,uBAAuB,4BAG1B;IACD,KAAK,EAAE;QACL,oBAAoB,EAAE,MAAM,CAAA;QAC5B,uBAAuB,EAAE,CAAC,CAAC,EAAE;YAAE,aAAa,EAAE,MAAM,CAAA;SAAE,KAAK,IAAI,CAAA;KAChE,CAAA;IACD,WAAW,EAAE,MAAM,IAAI,CAAA;CACxB,4CA8CC,CAAA;AAEF,eAAe,uBAAuB,CAAA"}
@@ -0,0 +1,10 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface FilterFeaturesProps {
3
+ onUpdate: (types: string[]) => void;
4
+ featureTypes: string[];
5
+ handleClose: () => void;
6
+ session: ApolloSessionModel;
7
+ }
8
+ export declare const FilterFeatures: ({ featureTypes, handleClose, onUpdate, session, }: FilterFeaturesProps) => import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=FilterFeatures.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FilterFeatures.d.ts","sourceRoot":"","sources":["../../src/components/FilterFeatures.tsx"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,QAAQ,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAA;IACnC,YAAY,EAAE,MAAM,EAAE,CAAA;IACtB,WAAW,EAAE,MAAM,IAAI,CAAA;IACvB,OAAO,EAAE,kBAAkB,CAAA;CAC5B;AAED,eAAO,MAAM,cAAc,sDAKxB,mBAAmB,4CA2FpB,CAAA"}
@@ -0,0 +1,10 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ interface FilterTranscriptsProps {
3
+ onUpdate: (forms: string[]) => void;
4
+ sourceFeature: AnnotationFeature;
5
+ filteredTranscripts: string[];
6
+ handleClose: () => void;
7
+ }
8
+ export declare const FilterTranscripts: ({ sourceFeature, filteredTranscripts, handleClose, onUpdate, }: FilterTranscriptsProps) => import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=FilterTranscripts.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FilterTranscripts.d.ts","sourceRoot":"","sources":["../../src/components/FilterTranscripts.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAc/D,UAAU,sBAAsB;IAC9B,QAAQ,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAA;IACnC,aAAa,EAAE,iBAAiB,CAAA;IAChC,mBAAmB,EAAE,MAAM,EAAE,CAAA;IAC7B,WAAW,EAAE,MAAM,IAAI,CAAA;CACxB;AAED,eAAO,MAAM,iBAAiB,mEAK3B,sBAAsB,4CA2DvB,CAAA"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface ImportFeaturesProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare function ImportFeatures({ changeManager, handleClose, session, }: ImportFeaturesProps): import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=ImportFeatures.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ImportFeatures.d.ts","sourceRoot":"","sources":["../../src/components/ImportFeatures.tsx"],"names":[],"mappings":"AA6BA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,cAAc,CAAC,EAC7B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,mBAAmB,2CAqRrB"}