@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

package/dist/jbrowse-plugin-apollo.umd.production.min.js

@@ -1,2 +1,2 @@
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n,r,a=e.max_chain_length,o=e.strstart,i=e.prev_length,s=e.nice_match,l=e.strstart>e.w_size-to?e.strstart-(e.w_size-to):0,c=e.window,u=e.w_mask,d=e.prev,f=e.strstart+eo,p=c[o+i-1],h=c[o+i];e.prev_length>=e.good_match&&(a>>=2),s>e.lookahead&&(s=e.lookahead);do{if(c[(n=t)+i]===h&&c[n+i-1]===p&&c[n]===c[o]&&c[++n]===c[o+1]){o+=2,n++;do{}while(c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&c[++o]===c[++n]&&o<f);if(r=eo-(f-o),o=f-eo,r>i){if(e.match_start=t,i=r,r>=s)break;p=c[o+i-1],h=c[o+i]}}}while((t=d[t&u])>l&&0!=--a);return i<=e.lookahead?i:e.lookahead}function mo(e){var t,n,r,a,o,i,s,l,c,u,d=e.w_size;do{if(a=e.window_size-e.lookahead-e.strstart,e.strstart>=d+(d-to)){La.arraySet(e.window,e.window,d,d,0),e.match_start-=d,e.strstart-=d,e.block_start-=d,t=n=e.hash_size;do{r=e.head[--t],e.head[t]=r>=d?r-d:0}while(--n);t=n=d;do{r=e.prev[--t],e.prev[t]=r>=d?r-d:0}while(--n);a+=d}if(0===e.strm.avail_in)break;if(s=e.window,l=e.strstart+e.lookahead,u=void 0,(u=(i=e.strm).avail_in)>(c=a)&&(u=c),n=0===u?0:(i.avail_in-=u,La.arraySet(s,i.input,i.next_in,u,l),1===i.state.wrap?i.adler=Ba(i.adler,s,u,l):2===i.state.wrap&&(i.adler=Ua(i.adler,s,u,l)),i.next_in+=u,i.total_in+=u,u),e.lookahead+=n,e.lookahead+e.insert>=Qa)for(e.ins_h=e.window[o=e.strstart-e.insert],e.ins_h=(e.ins_h<<e.hash_shift^e.window[o+1])&e.hash_mask;e.insert&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[o+Qa-1])&e.hash_mask,e.prev[o&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=o,o++,e.insert--,!(e.lookahead+e.insert<Qa)););}while(e.lookahead<to&&0!==e.strm.avail_in)}function go(e,t){var n=65535;for(n>e.pending_buf_size-5&&(n=e.pending_buf_size-5);;){if(e.lookahead<=1){if(mo(e),0===e.lookahead&&t===Ga)return 1;if(0===e.lookahead)break}e.strstart+=e.lookahead,e.lookahead=0;var r=e.block_start+n;if((0===e.strstart||e.strstart>=r)&&(e.lookahead=e.strstart-r,e.strstart=r,uo(e,!1),0===e.strm.avail_out))return 1;if(e.strstart-e.block_start>=e.w_size-to&&(uo(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(uo(e,!0),0===e.strm.avail_out?3:4):(e.strstart>e.block_start&&uo(e,!1),1)}function yo(e,t){for(var n,r;;){if(e.lookahead<to){if(mo(e),e.lookahead<to&&t===Ga)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=Qa&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Qa-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),0!==n&&e.strstart-n<=e.w_size-to&&(e.match_length=ho(e,n)),e.match_length>=Qa)if(r=qa._tr_tally(e,e.strstart-e.match_start,e.match_length-Qa),e.lookahead-=e.match_length,e.match_length<=e.max_lazy_match&&e.lookahead>=Qa){e.match_length--;do{e.strstart++,e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Qa-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart}while(0!=--e.match_length);e.strstart++}else e.strstart+=e.match_length,e.match_length=0,e.ins_h=e.window[e.strstart],e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+1])&e.hash_mask;else r=qa._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++;if(r&&(uo(e,!1),0===e.strm.avail_out))return 1}return e.insert=e.strstart<Qa-1?e.strstart:Qa-1,4===t?(uo(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(uo(e,!1),0===e.strm.avail_out)?1:2}function vo(e,t){for(var n,r,a;;){if(e.lookahead<to){if(mo(e),e.lookahead<to&&t===Ga)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=Qa&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Qa-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),e.prev_length=e.match_length,e.prev_match=e.match_start,e.match_length=Qa-1,0!==n&&e.prev_length<e.max_lazy_match&&e.strstart-n<=e.w_size-to&&(e.match_length=ho(e,n),e.match_length<=5&&(1===e.strategy||e.match_length===Qa&&e.strstart-e.match_start>4096)&&(e.match_length=Qa-1)),e.prev_length>=Qa&&e.match_length<=e.prev_length){a=e.strstart+e.lookahead-Qa,r=qa._tr_tally(e,e.strstart-1-e.prev_match,e.prev_length-Qa),e.lookahead-=e.prev_length-1,e.prev_length-=2;do{++e.strstart<=a&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Qa-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart)}while(0!=--e.prev_length);if(e.match_available=0,e.match_length=Qa-1,e.strstart++,r&&(uo(e,!1),0===e.strm.avail_out))return 1}else if(e.match_available){if((r=qa._tr_tally(e,0,e.window[e.strstart-1]))&&uo(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(r=qa._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<Qa-1?e.strstart:Qa-1,4===t?(uo(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(uo(e,!1),0===e.strm.avail_out)?1:2}function bo(e,t,n,r,a){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=r,this.func=a}function _o(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=Wa,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new La.Buf16(2*Za),this.dyn_dtree=new La.Buf16(2*(2*Ya+1)),this.bl_tree=new La.Buf16(2*(2*Ka+1)),lo(this.dyn_ltree),lo(this.dyn_dtree),lo(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new La.Buf16(Xa+1),this.heap=new La.Buf16(2*Ja+1),lo(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new La.Buf16(2*Ja+1),lo(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function wo(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=Va,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?no:ao,e.adler=2===t.wrap?0:1,t.last_flush=Ga,qa._tr_init(t),Ha):io(e,$a)}function xo(e){var t,n=wo(e);return n===Ha&&((t=e.state).window_size=2*t.w_size,lo(t.head),t.max_lazy_match=Pa[t.level].max_lazy,t.good_match=Pa[t.level].good_length,t.nice_match=Pa[t.level].nice_length,t.max_chain_length=Pa[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=Qa-1,t.match_available=0,t.ins_h=0),n}function So(e,t,n,r,a,o){if(!e)return $a;var i=1;if(-1===t&&(t=6),r<0?(i=0,r=-r):r>15&&(i=2,r-=16),a<1||a>9||n!==Wa||r<8||r>15||t<0||t>9||o<0||o>4)return io(e,$a);8===r&&(r=9);var s=new _o;return e.state=s,s.strm=e,s.wrap=i,s.gzhead=null,s.w_bits=r,s.w_size=1<<s.w_bits,s.w_mask=s.w_size-1,s.hash_bits=a+7,s.hash_size=1<<s.hash_bits,s.hash_mask=s.hash_size-1,s.hash_shift=~~((s.hash_bits+Qa-1)/Qa),s.window=new La.Buf8(2*s.w_size),s.head=new La.Buf16(s.hash_size),s.prev=new La.Buf16(s.w_size),s.lit_bufsize=1<<a+6,s.pending_buf_size=4*s.lit_bufsize,s.pending_buf=new La.Buf8(s.pending_buf_size),s.d_buf=1*s.lit_bufsize,s.l_buf=3*s.lit_bufsize,s.level=t,s.strategy=o,s.method=n,xo(e)}Pa=[new bo(0,0,0,0,go),new bo(4,4,8,4,yo),new bo(4,5,16,8,yo),new bo(4,6,32,32,yo),new bo(4,4,16,16,vo),new bo(8,16,32,32,vo),new bo(8,16,128,128,vo),new bo(8,32,128,256,vo),new bo(32,128,258,1024,vo),new bo(32,258,258,4096,vo)],Yr.deflateInit=function(e,t){return So(e,t,Wa,15,8,0)},Yr.deflateInit2=So,Yr.deflateReset=xo,Yr.deflateResetKeep=wo,Yr.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?$a:(e.state.gzhead=t,Ha):$a},Yr.deflate=function(e,t){var n,r,a,o;if(!e||!e.state||t>5||t<0)return e?io(e,$a):$a;if(r=e.state,!e.output||!e.input&&0!==e.avail_in||r.status===oo&&4!==t)return io(e,0===e.avail_out?-5:$a);if(r.strm=e,n=r.last_flush,r.last_flush=t,r.status===no)if(2===r.wrap)e.adler=0,fo(r,31),fo(r,139),fo(r,8),r.gzhead?(fo(r,(r.gzhead.text?1:0)+(r.gzhead.hcrc?2:0)+(r.gzhead.extra?4:0)+(r.gzhead.name?8:0)+(r.gzhead.comment?16:0)),fo(r,255&r.gzhead.time),fo(r,r.gzhead.time>>8&255),fo(r,r.gzhead.time>>16&255),fo(r,r.gzhead.time>>24&255),fo(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),fo(r,255&r.gzhead.os),r.gzhead.extra&&r.gzhead.extra.length&&(fo(r,255&r.gzhead.extra.length),fo(r,r.gzhead.extra.length>>8&255)),r.gzhead.hcrc&&(e.adler=Ua(e.adler,r.pending_buf,r.pending,0)),r.gzindex=0,r.status=69):(fo(r,0),fo(r,0),fo(r,0),fo(r,0),fo(r,0),fo(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),fo(r,3),r.status=ao);else{var i=Wa+(r.w_bits-8<<4)<<8;i|=(r.strategy>=2||r.level<2?0:r.level<6?1:6===r.level?2:3)<<6,0!==r.strstart&&(i|=32),i+=31-i%31,r.status=ao,po(r,i),0!==r.strstart&&(po(r,e.adler>>>16),po(r,65535&e.adler)),e.adler=1}if(69===r.status)if(r.gzhead.extra){for(a=r.pending;r.gzindex<(65535&r.gzhead.extra.length)&&(r.pending!==r.pending_buf_size||(r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),co(e),a=r.pending,r.pending!==r.pending_buf_size));)fo(r,255&r.gzhead.extra[r.gzindex]),r.gzindex++;r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),r.gzindex===r.gzhead.extra.length&&(r.gzindex=0,r.status=73)}else r.status=73;if(73===r.status)if(r.gzhead.name){a=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),co(e),a=r.pending,r.pending===r.pending_buf_size)){o=1;break}o=r.gzindex<r.gzhead.name.length?255&r.gzhead.name.charCodeAt(r.gzindex++):0,fo(r,o)}while(0!==o);r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),0===o&&(r.gzindex=0,r.status=91)}else r.status=91;if(91===r.status)if(r.gzhead.comment){a=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),co(e),a=r.pending,r.pending===r.pending_buf_size)){o=1;break}o=r.gzindex<r.gzhead.comment.length?255&r.gzhead.comment.charCodeAt(r.gzindex++):0,fo(r,o)}while(0!==o);r.gzhead.hcrc&&r.pending>a&&(e.adler=Ua(e.adler,r.pending_buf,r.pending-a,a)),0===o&&(r.status=ro)}else r.status=ro;if(r.status===ro&&(r.gzhead.hcrc?(r.pending+2>r.pending_buf_size&&co(e),r.pending+2<=r.pending_buf_size&&(fo(r,255&e.adler),fo(r,e.adler>>8&255),e.adler=0,r.status=ao)):r.status=ao),0!==r.pending){if(co(e),0===e.avail_out)return r.last_flush=-1,Ha}else if(0===e.avail_in&&so(t)<=so(n)&&4!==t)return io(e,-5);if(r.status===oo&&0!==e.avail_in)return io(e,-5);if(0!==e.avail_in||0!==r.lookahead||t!==Ga&&r.status!==oo){var s=2===r.strategy?function(e,t){for(var n;;){if(0===e.lookahead&&(mo(e),0===e.lookahead)){if(t===Ga)return 1;break}if(e.match_length=0,n=qa._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++,n&&(uo(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(uo(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(uo(e,!1),0===e.strm.avail_out)?1:2}(r,t):3===r.strategy?function(e,t){for(var n,r,a,o,i=e.window;;){if(e.lookahead<=eo){if(mo(e),e.lookahead<=eo&&t===Ga)return 1;if(0===e.lookahead)break}if(e.match_length=0,e.lookahead>=Qa&&e.strstart>0&&(r=i[a=e.strstart-1])===i[++a]&&r===i[++a]&&r===i[++a]){o=e.strstart+eo;do{}while(r===i[++a]&&r===i[++a]&&r===i[++a]&&r===i[++a]&&r===i[++a]&&r===i[++a]&&r===i[++a]&&r===i[++a]&&a<o);e.match_length=eo-(o-a),e.match_length>e.lookahead&&(e.match_length=e.lookahead)}if(e.match_length>=Qa?(n=qa._tr_tally(e,1,e.match_length-Qa),e.lookahead-=e.match_length,e.strstart+=e.match_length,e.match_length=0):(n=qa._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++),n&&(uo(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(uo(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(uo(e,!1),0===e.strm.avail_out)?1:2}(r,t):Pa[r.level].func(r,t);if(3!==s&&4!==s||(r.status=oo),1===s||3===s)return 0===e.avail_out&&(r.last_flush=-1),Ha;if(2===s&&(1===t?qa._tr_align(r):5!==t&&(qa._tr_stored_block(r,0,0,!1),3===t&&(lo(r.head),0===r.lookahead&&(r.strstart=0,r.block_start=0,r.insert=0))),co(e),0===e.avail_out))return 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Ho={},$o={},Vo=Wr,Wo=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],Jo=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],Yo=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],Ko=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64],Zo=Wr,Xo=Ra,Qo=Da,ei=function(e,t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E,k,C;k=e.input,a=(r=e.next_in)+(e.avail_in-5),C=e.output,i=(o=e.next_out)-(t-e.avail_out),s=o+(e.avail_out-257),l=(n=e.state).dmax,c=n.wsize,u=n.whave,d=n.wnext,f=n.window,p=n.hold,h=n.bits,m=n.lencode,g=n.distcode,y=(1<<n.lenbits)-1,v=(1<<n.distbits)-1;e:do{h<15&&(p+=k[r++]<<h,p+=k[r++]<<(h+=8),h+=8),b=m[p&y];t:for(;;){if(p>>>=_=b>>>24,h-=_,0==(_=b>>>16&255))C[o++]=65535&b;else{if(!(16&_)){if(0==(64&_)){b=m[(65535&b)+(p&(1<<_)-1)];continue t}if(32&_){n.mode=12;break 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Uint8Array([0,97,115,109,1,0,0,0,1,13,2,96,0,1,127,96,4,127,127,127,127,1,127,3,7,6,0,1,1,1,1,1,6,6,1,127,1,65,0,11,7,50,6,3,109,117,108,0,1,5,100,105,118,95,115,0,2,5,100,105,118,95,117,0,3,5,114,101,109,95,115,0,4,5,114,101,109,95,117,0,5,8,103,101,116,95,104,105,103,104,0,0,10,191,1,6,4,0,35,0,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,126,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,127,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,128,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,129,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,130,34,4,66,32,135,167,36,0,32,4,167,11])),{}).exports}catch(Ql){}function Di(e,t,n){this.low=0|e,this.high=0|t,this.unsigned=!!n}function ji(e){return!0===(e&&e.__isLong__)}function Li(e){var t=Math.clz32(e&-e);return e?31-t:t}Object.defineProperty(Di.prototype,"__isLong__",{value:!0}),Di.isLong=ji;var qi={},Bi={};function Ui(e,t){var n,r,a;return t?(a=0<=(e>>>=0)&&e<256)&&(r=Bi[e])?r:(n=Gi(e,0,!0),a&&(Bi[e]=n),n):(a=-128<=(e|=0)&&e<128)&&(r=qi[e])?r:(n=Gi(e,e<0?-1:0,!1),a&&(qi[e]=n),n)}function zi(e,t){if(isNaN(e))return t?Xi:Zi;if(t){if(e<0)return Xi;if(e>=Ji)return rs}else{if(e<=-Yi)return as;if(e+1>=Yi)return ns}return e<0?zi(-e,t).neg():Gi(e%Wi|0,e/Wi|0,t)}function Gi(e,t,n){return new Di(e,t,n)}Di.fromInt=Ui,Di.fromNumber=zi,Di.fromBits=Gi;var Hi=Math.pow;function $i(e,t,n){if(0===e.length)throw Error("empty string");if("number"==typeof t?(n=t,t=!1):t=!!t,"NaN"===e||"Infinity"===e||"+Infinity"===e||"-Infinity"===e)return t?Xi:Zi;if((n=n||10)<2||36<n)throw RangeError("radix");var r;if((r=e.indexOf("-"))>0)throw Error("interior hyphen");if(0===r)return $i(e.substring(1),t,n).neg();for(var a=zi(Hi(n,8)),o=Zi,i=0;i<e.length;i+=8){var s=Math.min(8,e.length-i),l=parseInt(e.substring(i,i+s),n);if(s<8){var c=zi(Hi(n,s));o=o.mul(c).add(zi(l))}else o=(o=o.mul(a)).add(zi(l))}return o.unsigned=t,o}function Vi(e,t){return"number"==typeof e?zi(e,t):"string"==typeof e?$i(e,t):Gi(e.low,e.high,"boolean"==typeof t?t:e.unsigned)}Di.fromString=$i,Di.fromValue=Vi;var Wi=4294967296,Ji=Wi*Wi,Yi=Ji/2,Ki=Ui(16777216),Zi=Ui(0);Di.ZERO=Zi;var Xi=Ui(0,!0);Di.UZERO=Xi;var Qi=Ui(1);Di.ONE=Qi;var es=Ui(1,!0);Di.UONE=es;var ts=Ui(-1);Di.NEG_ONE=ts;var ns=Gi(-1,2147483647,!1);Di.MAX_VALUE=ns;var rs=Gi(-1,-1,!0);Di.MAX_UNSIGNED_VALUE=rs;var as=Gi(0,-2147483648,!1);Di.MIN_VALUE=as;var os=Di.prototype;os.toInt=function(){return this.unsigned?this.low>>>0:this.low},os.toNumber=function(){return this.unsigned?(this.high>>>0)*Wi+(this.low>>>0):this.high*Wi+(this.low>>>0)},os.toString=function(e){if((e=e||10)<2||36<e)throw RangeError("radix");if(this.isZero())return"0";if(this.isNegative()){if(this.eq(as)){var t=zi(e),n=this.div(t),r=n.mul(t).sub(this);return n.toString(e)+r.toInt().toString(e)}return"-"+this.neg().toString(e)}for(var a=zi(Hi(e,6),this.unsigned),o=this,i="";;){var s=o.div(a),l=(o.sub(s.mul(a)).toInt()>>>0).toString(e);if((o=s).isZero())return l+i;for(;l.length<6;)l="0"+l;i=""+l+i}},os.getHighBits=function(){return this.high},os.getHighBitsUnsigned=function(){return this.high>>>0},os.getLowBits=function(){return this.low},os.getLowBitsUnsigned=function(){return this.low>>>0},os.getNumBitsAbs=function(){if(this.isNegative())return this.eq(as)?64:this.neg().getNumBitsAbs();for(var e=0!=this.high?this.high:this.low,t=31;t>0&&0==(e&1<<t);t--);return 0!=this.high?t+33:t+1},os.isZero=function(){return 0===this.high&&0===this.low},os.eqz=os.isZero,os.isNegative=function(){return!this.unsigned&&this.high<0},os.isPositive=function(){return this.unsigned||this.high>=0},os.isOdd=function(){return 1==(1&this.low)},os.isEven=function(){return 0==(1&this.low)},os.equals=function(e){return ji(e)||(e=Vi(e)),(this.unsigned===e.unsigned||this.high>>>31!=1||e.high>>>31!=1)&&this.high===e.high&&this.low===e.low},os.eq=os.equals,os.notEquals=function(e){return!this.eq(e)},os.neq=os.notEquals,os.ne=os.notEquals,os.lessThan=function(e){return this.comp(e)<0},os.lt=os.lessThan,os.lessThanOrEqual=function(e){return this.comp(e)<=0},os.lte=os.lessThanOrEqual,os.le=os.lessThanOrEqual,os.greaterThan=function(e){return this.comp(e)>0},os.gt=os.greaterThan,os.greaterThanOrEqual=function(e){return this.comp(e)>=0},os.gte=os.greaterThanOrEqual,os.ge=os.greaterThanOrEqual,os.compare=function(e){if(ji(e)||(e=Vi(e)),this.eq(e))return 0;var t=this.isNegative(),n=e.isNegative();return t&&!n?-1:!t&&n?1:this.unsigned?e.high>>>0>this.high>>>0||e.high===this.high&&e.low>>>0>this.low>>>0?-1:1:this.sub(e).isNegative()?-1:1},os.comp=os.compare,os.negate=function(){return!this.unsigned&&this.eq(as)?as:this.not().add(Qi)},os.neg=os.negate,os.add=function(e){ji(e)||(e=Vi(e));var t=0,n=0,r=0,a=0;return r+=(a+=(65535&this.low)+(65535&e.low))>>>16,n+=(r+=(this.low>>>16)+(e.low>>>16))>>>16,t+=(n+=(65535&this.high)+(65535&e.high))>>>16,t+=(this.high>>>16)+(e.high>>>16),Gi((r&=65535)<<16|(a&=65535),(t&=65535)<<16|(n&=65535),this.unsigned)},os.subtract=function(e){return ji(e)||(e=Vi(e)),this.add(e.neg())},os.sub=os.subtract,os.multiply=function(e){if(this.isZero())return this;if(ji(e)||(e=Vi(e)),Mi)return Gi(Mi.mul(this.low,this.high,e.low,e.high),Mi.get_high(),this.unsigned);if(e.isZero())return this.unsigned?Xi:Zi;if(this.eq(as))return e.isOdd()?as:Zi;if(e.eq(as))return this.isOdd()?as:Zi;if(this.isNegative())return e.isNegative()?this.neg().mul(e.neg()):this.neg().mul(e).neg();if(e.isNegative())return this.mul(e.neg()).neg();if(this.lt(Ki)&&e.lt(Ki))return zi(this.toNumber()*e.toNumber(),this.unsigned);var t=65535&this.high,n=this.low>>>16,r=65535&this.low,a=65535&e.high,o=e.low>>>16,i=65535&e.low,s=0,l=0,c=0,u=0;return c+=(u+=r*i)>>>16,l+=(c+=n*i)>>>16,c&=65535,l+=(c+=r*o)>>>16,s+=(l+=t*i)>>>16,l&=65535,s+=(l+=n*o)>>>16,l&=65535,s+=(l+=r*a)>>>16,s+=(this.high>>>16)*i+t*o+n*a+r*(e.high>>>16),Gi((c&=65535)<<16|(u&=65535),(s&=65535)<<16|(l&=65535),this.unsigned)},os.mul=os.multiply,os.divide=function(e){if(ji(e)||(e=Vi(e)),e.isZero())throw Error("division by zero");var t,n,r;if(Mi)return this.unsigned||-2147483648!==this.high||-1!==e.low||-1!==e.high?Gi((this.unsigned?Mi.div_u:Mi.div_s)(this.low,this.high,e.low,e.high),Mi.get_high(),this.unsigned):this;if(this.isZero())return this.unsigned?Xi:Zi;if(this.unsigned){if(e.unsigned||(e=e.toUnsigned()),e.gt(this))return Xi;if(e.gt(this.shru(1)))return es;r=Xi}else{if(this.eq(as))return e.eq(Qi)||e.eq(ts)?as:e.eq(as)?Qi:(t=this.shr(1).div(e).shl(1)).eq(Zi)?e.isNegative()?Qi:ts:(n=this.sub(e.mul(t)),r=t.add(n.div(e)));if(e.eq(as))return this.unsigned?Xi:Zi;if(this.isNegative())return e.isNegative()?this.neg().div(e.neg()):this.neg().div(e).neg();if(e.isNegative())return this.div(e.neg()).neg();r=Zi}for(n=this;n.gte(e);){t=Math.max(1,Math.floor(n.toNumber()/e.toNumber()));for(var a=Math.ceil(Math.log(t)/Math.LN2),o=a<=48?1:Hi(2,a-48),i=zi(t),s=i.mul(e);s.isNegative()||s.gt(n);)s=(i=zi(t-=o,this.unsigned)).mul(e);i.isZero()&&(i=Qi),r=r.add(i),n=n.sub(s)}return r},os.div=os.divide,os.modulo=function(e){return ji(e)||(e=Vi(e)),Mi?Gi((this.unsigned?Mi.rem_u:Mi.rem_s)(this.low,this.high,e.low,e.high),Mi.get_high(),this.unsigned):this.sub(this.div(e).mul(e))},os.mod=os.modulo,os.rem=os.modulo,os.not=function(){return Gi(~this.low,~this.high,this.unsigned)},os.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32},os.clz=os.countLeadingZeros,os.countTrailingZeros=function(){return this.low?Li(this.low):Li(this.high)+32},os.ctz=os.countTrailingZeros,os.and=function(e){return ji(e)||(e=Vi(e)),Gi(this.low&e.low,this.high&e.high,this.unsigned)},os.or=function(e){return ji(e)||(e=Vi(e)),Gi(this.low|e.low,this.high|e.high,this.unsigned)},os.xor=function(e){return ji(e)||(e=Vi(e)),Gi(this.low^e.low,this.high^e.high,this.unsigned)},os.shiftLeft=function(e){return ji(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Gi(this.low<<e,this.high<<e|this.low>>>32-e,this.unsigned):Gi(0,this.low<<e-32,this.unsigned)},os.shl=os.shiftLeft,os.shiftRight=function(e){return ji(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Gi(this.low>>>e|this.high<<32-e,this.high>>e,this.unsigned):Gi(this.high>>e-32,this.high>=0?0:-1,this.unsigned)},os.shr=os.shiftRight,os.shiftRightUnsigned=function(e){return ji(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Gi(this.low>>>e|this.high<<32-e,this.high>>>e,this.unsigned):Gi(32===e?this.high:this.high>>>e-32,0,this.unsigned)},os.shru=os.shiftRightUnsigned,os.shr_u=os.shiftRightUnsigned,os.rotateLeft=function(e){var t;return ji(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Gi(this.high,this.low,this.unsigned):e<32?Gi(this.low<<e|this.high>>>(t=32-e),this.high<<e|this.low>>>t,this.unsigned):Gi(this.high<<(e-=32)|this.low>>>(t=32-e),this.low<<e|this.high>>>t,this.unsigned)},os.rotl=os.rotateLeft,os.rotateRight=function(e){var t;return ji(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Gi(this.high,this.low,this.unsigned):e<32?Gi(this.high<<(t=32-e)|this.low>>>e,this.low<<t|this.high>>>e,this.unsigned):Gi(this.low<<(t=32-(e-=32))|this.high>>>e,this.high<<t|this.low>>>e,this.unsigned)},os.rotr=os.rotateRight,os.toSigned=function(){return this.unsigned?Gi(this.low,this.high,!1):this},os.toUnsigned=function(){return this.unsigned?this:Gi(this.low,this.high,!0)},os.toBytes=function(e){return e?this.toBytesLE():this.toBytesBE()},os.toBytesLE=function(){var e=this.high,t=this.low;return[255&t,t>>>8&255,t>>>16&255,t>>>24,255&e,e>>>8&255,e>>>16&255,e>>>24]},os.toBytesBE=function(){var e=this.high,t=this.low;return[e>>>24,e>>>16&255,e>>>8&255,255&e,t>>>24,t>>>16&255,t>>>8&255,255&t]},Di.fromBytes=function(e,t,n){return n?Di.fromBytesLE(e,t):Di.fromBytesBE(e,t)},Di.fromBytesLE=function(e,t){return new Di(e[0]|e[1]<<8|e[2]<<16|e[3]<<24,e[4]|e[5]<<8|e[6]<<16|e[7]<<24,t)},Di.fromBytesBE=function(e,t){return new Di(e[4]<<24|e[5]<<16|e[6]<<8|e[7],e[0]<<24|e[1]<<16|e[2]<<8|e[3],t)};var is=function(){function e(t){var n=t.filehandle,r=t.path;if(K(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Br(r)}}var t,n,r;return X(e,[{key:"_readLongWithOverflow",value:function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=!(arguments.length>2&&void 0!==arguments[2])||arguments[2],r=Di.fromBytesLE(e.slice(t,t+8),n);if(r.greaterThan(Number.MAX_SAFE_INTEGER)||r.lessThan(Number.MIN_SAFE_INTEGER))throw new TypeError("integer overflow");return r.toNumber()}},{key:"_getIndex",value:function(){return this.index||(this.index=this._readIndex()),this.index}},{key:"_readIndex",value:(r=Y(V().mark((function e(){var t,n,r,a,o,i,s;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return t=Yt.allocUnsafe(8),e.next=3,this.filehandle.read(t,0,8,0);case 3:if(n=this._readLongWithOverflow(t,0,!0)){e.next=6;break}return e.abrupt("return",[[0,0]]);case 6:if((r=new Array(n+1))[0]=[0,0],!((a=16*n)>Number.MAX_SAFE_INTEGER)){e.next=11;break}throw new TypeError("integer overflow");case 11:return t=Yt.allocUnsafe(a),e.next=14,this.filehandle.read(t,0,a,8);case 14:for(o=0;o<n;o+=1)i=this._readLongWithOverflow(t,16*o),s=this._readLongWithOverflow(t,16*o+8),r[o+1]=[i,s];return e.abrupt("return",r);case 16:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"getLastBlock",value:(n=Y(V().mark((function e(){var t;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndex();case 2:if((t=e.sent).length){e.next=5;break}return e.abrupt("return",void 0);case 5:return e.abrupt("return",t[t.length-1]);case 6:case"end":return e.stop()}}),e,this)}))),function(){return n.apply(this,arguments)})},{key:"getRelevantBlocksForRead",value:(t=Y(V().mark((function e(t,n){var r,a,o,i,s,l,c,u,d;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=n+t,0!==t){e.next=3;break}return e.abrupt("return",[]);case 3:return e.next=5,this._getIndex();case 5:for(o=[],i=function(e,t){var r=e[1];return r<=n&&(t?t[1]:Infinity)>n?0:r<n?-1:1},s=0,l=(a=e.sent).length-1,c=Math.floor(a.length/2),u=i(a[c],a[c+1]);0!==u;)u>0?l=c-1:u<0&&(s=c+1),c=Math.ceil((l-s)/2)+s,u=i(a[c],a[c+1]);o.push(a[c]),d=c+1;case 15:if(!(d<a.length)){e.next=22;break}if(o.push(a[d]),!(a[d][1]>=r)){e.next=19;break}return e.abrupt("break",22);case 19:d+=1,e.next=15;break;case 22:return o[o.length-1][1]<r&&o.push([]),e.abrupt("return",o);case 24:case"end":return e.stop()}}),e,this)}))),function(e,n){return t.apply(this,arguments)})}]),e}(),ss=function(){function e(t){var n=t.filehandle,r=t.path,a=t.gziFilehandle,o=t.gziPath;if(K(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Br(r)}if(!a&&!o&&!r)throw new TypeError("either gziFilehandle or gziPath must be defined");this.gzi=new is({filehandle:a,path:a||o||!r?"".concat(r,".gzi"):o})}var t,n,r,a;return X(e,[{key:"stat",value:(a=Y(V().mark((function e(){var t;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.filehandle.stat();case 2:return t=e.sent,e.t0=Object,e.t1=t,e.next=7,this.getUncompressedFileSize();case 7:return e.t2=e.sent,e.t3=void 0,e.t4=void 0,e.t5={size:e.t2,blocks:e.t3,blksize:e.t4},e.abrupt("return",e.t0.assign.call(e.t0,e.t1,e.t5));case 12:case"end":return e.stop()}}),e,this)}))),function(){return a.apply(this,arguments)})},{key:"getUncompressedFileSize",value:(r=Y(V().mark((function e(){var t,n,r,a,o;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getLastBlock();case 2:return t=ue(e.sent,2),n=t[1],e.next=7,this.filehandle.stat();case 7:return r=e.sent.size,a=Yt.allocUnsafe(4),e.next=12,this.filehandle.read(a,0,4,r-28-4);case 12:if(4===e.sent.bytesRead){e.next=16;break}throw new Error("read error");case 16:return o=a.readUInt32LE(0),e.abrupt("return",n+o);case 18:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"_readAndUncompressBlock",value:(n=Y(V().mark((function e(t,n,r){var a,o,i;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(a=ue(n,1)[0],o=ue(r,1)[0]){e.next=7;break}return e.next=6,this.filehandle.stat();case 6:o=e.sent.size;case 7:return i=o-a,e.next=10,this.filehandle.read(t,0,i,a);case 10:return e.next=12,Fi(t.slice(0,i));case 12:return e.abrupt("return",e.sent);case 14:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"read",value:(t=Y(V().mark((function e(t,n,r,a){var o,i,s,l,c,u,d,f,p,h;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getRelevantBlocksForRead(r,a);case 2:o=e.sent,i=Yt.allocUnsafe(65536),s=n,l=0,c=0;case 7:if(!(c<o.length-1)){e.next=18;break}return e.next=10,this._readAndUncompressBlock(i,o[c],o[c+1]);case 10:u=e.sent,d=ue(o[c],2),p=(f=d[1])>=a?0:a-f,h=Math.min(a+r,f+u.length)-f,p>=0&&p<u.length&&(u.copy(t,s,p,h),s+=h-p,l+=h-p);case 15:c+=1,e.next=7;break;case 18:return e.abrupt("return",{bytesRead:l,buffer:t});case 19:case"end":return e.stop()}}),e,this)}))),function(e,n,r,a){return t.apply(this,arguments)})}]),e}();function ls(e,t){return e.offset+e.lineBytes*Math.floor(t/e.lineLength)+t%e.lineLength}function cs(e,t){return us.apply(this,arguments)}function us(){return us=Y(V().mark((function e(t,n){var r,a,o,i;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,t.readFile(n);case 2:if((r=e.sent)&&r.length){e.next=5;break}throw new Error("No data read from FASTA index (FAI) file");case 5:return a=0,i=r.toString("utf8").split(/\r?\n/).filter((function(e){return/\S/.test(e)})).map((function(e){return e.split("\t")})).filter((function(e){return""!==e[0]})).map((function(e){return o&&o.name===e[0]||(o={name:e[0],id:a},a+=1),{id:o.id,name:e[0],length:+e[1],start:0,end:+e[1],offset:+e[2],lineLength:+e[3],lineBytes:+e[4]}})),e.abrupt("return",{name:Object.fromEntries(i.map((function(e){return[e.name,e]}))),id:Object.fromEntries(i.map((function(e){return[e.id,e]})))});case 8:case"end":return e.stop()}}),e)}))),us.apply(this,arguments)}var ds=function(){function e(t){var n=t.fasta,r=t.fai,a=t.path,o=t.faiPath;if(K(this,e),n)this.fasta=n;else{if(!a)throw new Error("Need to pass filehandle for fasta or path to localfile");this.fasta=new Br(a)}if(r)this.fai=r;else if(o)this.fai=new Br(o);else{if(!a)throw new Error("Need to pass filehandle for  or path to localfile");this.fai=new Br("".concat(a,".fai"))}}var t,n,r,a,o,i,s,l,c;return X(e,[{key:"_getIndexes",value:(c=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return this.indexes||(this.indexes=cs(this.fai,t)),e.abrupt("return",this.indexes);case 2:case"end":return e.stop()}}),e,this)}))),function(e){return c.apply(this,arguments)})},{key:"getSequenceNames",value:(l=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.t0=Object,e.next=3,this._getIndexes(t);case 3:return e.t1=e.sent.name,e.abrupt("return",e.t0.keys.call(e.t0,e.t1));case 5:case"end":return e.stop()}}),e,this)}))),function(e){return l.apply(this,arguments)})},{key:"getSequenceSizes",value:(s=Y(V().mark((function e(t){var n,r,a;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n={},e.next=3,this._getIndexes(t);case 3:for(r=Object.values(e.sent.id),a=0;a<r.length;a+=1)n[r[a].name]=r[a].length;return e.abrupt("return",n);case 7:case"end":return e.stop()}}),e,this)}))),function(e){return s.apply(this,arguments)})},{key:"getSequenceSize",value:(i=Y(V().mark((function e(t,n){var r;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.abrupt("return",null===(r=e.sent.name[t])||void 0===r?void 0:r.length);case 4:case"end":return e.stop()}}),e,this)}))),function(e,t){return i.apply(this,arguments)})},{key:"hasReferenceSequence",value:(o=Y(V().mark((function e(t,n){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.t0=t,e.abrupt("return",!!e.sent.name[e.t0]);case 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r,a=e.fasta,o=e.path,i=e.fai,s=e.faiPath,l=e.gzi,c=e.gziPath;return K(this,n),r=t.call(this,{fasta:a,path:o,fai:i,faiPath:s}),a&&l?r.fasta=new ss({filehandle:a,gziFilehandle:l}):o&&c&&(r.fasta=new ss({path:o,gziPath:c})),r}return X(n)}(ds);function ps(e){return e.split(">").filter((function(e){return/\S/.test(e)})).map((function(e){var t=de(e.split("\n")),n=t[0],r=t.slice(1),a=de(n.split(" ")),o=a[0],i=a.slice(1),s=r.join("").replace(/\s/g,"");return{id:o,description:i.join(" "),sequence:s}}))}var hs=function(){function e(t){var n=t.fasta,r=t.path;if(K(this,e),n)this.fasta=n;else{if(!r)throw new Error("Need to pass fasta or path");this.fasta=new Br(r)}this.data=this.fasta.readFile().then((function(e){return ps(e.toString("utf8"))}))}var t,n;return X(e,[{key:"fetch",value:(n=Y(V().mark((function e(t,n,r){var a,o;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:if(a=e.sent.find((function(e){return e.id===t})),o=r-n,a){e.next=7;break}throw new Error("no sequence with id ".concat(t," exists"));case 7:return e.abrupt("return",a.sequence.substr(n,o));case 8:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"getSequenceNames",value:(t=Y(V().mark((function e(){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:return e.abrupt("return",e.sent.map((function(e){return e.id})));case 4:case"end":return e.stop()}}),e,this)}))),function(){return t.apply(this,arguments)})}]),e}(),ms=D({__proto__:null,parseSmallFasta:ps,FetchableSmallFasta:hs,IndexedFasta:ds,BgzipIndexedFasta:fs}),gs=D(Vr);Object.defineProperty(qr,"__esModule",{value:!0}),qr.AddAssemblyFromExternalChange=void 0;var ys=ms,vs=gs,bs=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","AddAssemblyFromExternalChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. 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a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E,k,C,A,O,T,N,I,R;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(s=(i=Dt.env.CHUNK_SIZE)&&Number(i),Dt.env.FILE_UPLOAD_FOLDER){e.next=5;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 5:return l=r.fa,c=r.fai,u=r.gzi,d=t.assemblyModel,f=t.checkModel,p=t.fileModel,h=t.filesService,m=t.refSeqModel,g=t.user,e.next=9,p.findById(l);case 9:if(null==(y=e.sent)?void 0:y.checksum){e.next=13;break}throw new Error("No checksum for file document ".concat(null==y?void 0:y.id));case 13:return e.next=15,p.findById(c);case 15:if(null==(v=e.sent)?void 0:v.checksum){e.next=19;break}throw new Error("No checksum for file document ".concat(null==v?void 0:v.id));case 19:return e.next=21,p.findById(u);case 21:if(null==(b=e.sent)?void 0:b.checksum){e.next=25;break}throw new Error("No checksum for file document ".concat(null==b?void 0:b.id));case 25:return _=h.getFileHandle(y),w=h.getFileHandle(v),x=h.getFileHandle(b),S=new ws.BgzipIndexedFasta({fasta:_,fai:w,gzi:x}),e.next=31,S.getSequenceSizes();case 31:return E=e.sent,e.next=34,Promise.all([_.close(),w.close(),x.close()]);case 34:return e.next=36,d.findOne({name:n}).exec();case 36:if(!e.sent){e.next=39;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 39:return e.next=41,f.find({isDefault:!0}).exec();case 41:return k=e.sent.map((function(e){return e._id.toHexString()})),e.next=45,d.create([{_id:this.assembly,name:n,user:g,status:-1,fileIds:r,checks:k}]);case 45:C=ue(e.sent,1),A=C[0],null===(a=(o=this.logger).debug)||void 0===a||a.call(o,'Added new assembly "'.concat(n,'", docId "').concat(A._id,'"')),e.t0=V().keys(E);case 50:if((e.t1=e.t0()).done){e.next=60;break}return O=e.t1.value,e.next=54,m.create([$($({name:O,assembly:A._id,length:E[O]},s?{chunkSize:s}:null),{},{user:g,status:-1})]);case 54:I=ue(e.sent,1),R=I[0],null===(T=(N=this.logger).debug)||void 0===T||T.call(N,'Added new refSeq "'.concat(O,'", docId 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g=ue(e.sent,1),y=g[0],null===(i=(s=this.logger).debug)||void 0===i||i.call(s,'Added new assembly "'.concat(n,'", docId "').concat(y._id,'"')),null===(l=(c=this.logger).debug)||void 0===l||l.call(c,'File type: "'.concat(h.type,'", assemblyId: "').concat(y._id,'"')),e.next=25,this.addRefSeqIntoDb(h,y._id.toString(),t);case 25:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new s({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),s}(kr.FromFileBaseChange);_s.AddAssemblyFromFileChange=xs;var Ss={},Es={};Object.defineProperty(Es,"__esModule",{value:!0}),Es.DeleteFeatureChange=void 0,Es.findAndDeleteChildFeature=As,Es.isDeleteFeatureChange=function(e){return"DeleteFeatureChange"===e.typeName};var ks=Ss,Cs=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","DeleteFeatureChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"notification",get:function(){return"Feature deleted successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:a.deletedFeature,parentFeatureId:a.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l=this;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,o=ve(this.changes),e.prev=3,s=V().mark((function e(){var t,o,s,c,u,d,f,p,h;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return s=(o=i.value).deletedFeature,c=o.parentFeatureId,e.next=4,n.findOne({allIds:s._id}).session(r).exec();case 4:if(u=e.sent){e.next=9;break}throw d="*** ERROR: The following featureId was not found in database ='".concat(s._id,"'"),a.error(d),new Error(d);case 9:if(!u._id.equals(s._id)){e.next=16;break}if(!c){e.next=12;break}throw new Error('Feature "'.concat(s._id,'" is top-level, but received a parent feature ID'));case 12:return e.next=14,n.findByIdAndDelete(u._id);case 14:return null===(f=a.debug)||void 0===f||f.call(a,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'". Whole document deleted.')),e.abrupt("return",1);case 16:return(p=As(u,s._id,l)).push(s._id),u.allIds=u.allIds.filter((function(e){return!p.includes(e)})),u.markModified("children"),e.prev=20,e.next=23,u.save();case 23:e.next=29;break;case 25:throw e.prev=25,e.t0=e.catch(20),null===(h=a.debug)||void 0===h||h.call(a,"*** FAILED: ".concat(e.t0)),e.t0;case 29:null===(t=a.debug)||void 0===t||t.call(a,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'"'));case 30:case"end":return e.stop()}}),e,null,[[20,25]])})),o.s();case 6:if((i=o.n()).done){e.next=12;break}return e.delegateYield(s(),"t0",8);case 8:if(!e.t0){e.next=10;break}return e.abrupt("continue",10);case 10:e.next=6;break;case 12:e.next=17;break;case 14:e.prev=14,e.t1=e.catch(3),o.e(e.t1);case 17:return e.prev=17,o.f(),e.finish(17);case 20:case"end":return e.stop()}}),e,this,[[3,14,17,20]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=ve(this.changes),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=18;break}if(o=(a=r.value).deletedFeature,!(i=a.parentFeatureId)){e.next=15;break}if(s=t.getFeature(i)){e.next=12;break}throw new Error('Could not find parent feature "'.concat(i,'"'));case 12:s.deleteChild(o._id),e.next=16;break;case 15:t.getFeature(o._id)&&t.deleteFeature(o._id);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),n.e(e.t0);case 23:return e.prev=23,n.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,a=fe(this.changedIds).reverse(),o=fe(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(o),"'")),new ks.AddFeatureChange({changedIds:a,typeName:"AddFeatureChange",changes:o,assembly:t},{logger:r})}}]),o}(tr.FeatureChange);function As(e,t,n){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var r=e._id,a=e.children,o=a.get(t);if(o){var i=n.getChildFeatureIds(o);return a.delete(t),i}var s,l=ve(a);try{for(l.s();!(s=l.n()).done;){var c=ue(s.value,2)[1];try{return As(c,t,n)}catch(e){}}}catch(e){l.e(e)}finally{l.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(r))}Es.DeleteFeatureChange=Cs,Object.defineProperty(Ss,"__esModule",{value:!0}),Ss.AddFeatureChange=void 0,Ss.isAddFeatureChange=function(e){return"AddFeatureChange"===e.typeName};var Os=Es,Ts=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","AddFeatureChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"notification",get:function(){return"Feature added successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:a.addedFeature,parentFeatureId:a.parentFeatureId,copyFeature:a.copyFeature,allIds:a.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E,k,C,A,O,T,N,I,R,F,P,M,D,j,L,q;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return a=t.assemblyModel,o=t.featureModel,i=t.refSeqModel,s=t.session,l=t.user,c=this.assembly,u=this.changes,d=this.logger,e.next=4,a.findById(c).session(s).exec();case 4:if(e.sent){e.next=9;break}throw f='*** ERROR: Assembly with id "'.concat(c,'" not found'),d.error(f),new Error(f);case 9:p=0,null===(n=d.debug)||void 0===n||n.call(d,"changes: ".concat(JSON.stringify(u))),(h=Dt.env.INDEXED_IDS)&&(m=h.split(",")),g=ve(u),e.prev=14,g.s();case 16:if((y=g.n()).done){e.next=65;break}return b=y.value,null===(v=d.debug)||void 0===v||v.call(d,"change: ".concat(JSON.stringify(b))),w=b.allIds,x=b.copyFeature,S=b.parentFeatureId,E=(_=b.addedFeature)._id,k=_.refSeq,e.next=23,i.findById(k).session(s).exec();case 23:if(e.sent){e.next=26;break}throw new Error('RefSeq was not found by assembly "'.concat(c,'" and seq_id "').concat(k,'" not found'));case 26:if(!x){e.next=37;break}return A=this.getIndexedIds(_,m),e.next=30,o.create([$($({},_),{},{allIds:w,indexedIds:A,status:-1,user:l})],{session:s});case 30:O=ue(e.sent,1),T=O[0],null===(C=d.debug)||void 0===C||C.call(d,'Copied feature, docId "'.concat(T._id,'" to assembly "').concat(c,'"')),p++,e.next=62;break;case 37:if(!S){e.next=53;break}return e.next=40,o.findOne({allIds:S}).session(s).exec();case 40:if(I=e.sent){e.next=43;break}throw new Error('Could not find feature with ID "'.concat(S,'"'));case 43:if(R=this.getFeatureFromId(I,S)){e.next=46;break}throw new Error('Could not find feature with ID "'.concat(S,'" in feature "').concat(I._id,'"'));case 46:return this.addChild(R,_),F=this.getChildFeatureIds(_),(N=I.allIds).push.apply(N,[E].concat(fe(F))),e.next=51,I.save();case 51:e.next=62;break;case 53:return M=this.getChildFeatureIds(_),D=[E].concat(fe(M)),j=this.getIndexedIds(_,m),e.next=58,o.create([$({allIds:D,indexedIds:j,status:0},_)],{session:s});case 58:L=ue(e.sent,1),q=L[0],null===(P=d.verbose)||void 0===P||P.call(d,'Added docId "'.concat(q._id,'"'));case 62:p++;case 63:e.next=16;break;case 65:e.next=70;break;case 67:e.prev=67,e.t0=e.catch(14),g.e(e.t0);case 70:return e.prev=70,g.f(),e.finish(70);case 73:null===(r=d.debug)||void 0===r||r.call(d,"Added ".concat(p," new feature(s) into database."));case 74:case"end":return e.stop()}}),e,this,[[14,67,70,73]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s,l;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=this.assembly,r=ve(this.changes),e.prev=4,r.s();case 6:if((a=r.n()).done){e.next=24;break}if(i=(o=a.value).addedFeature,!(s=o.parentFeatureId)){e.next=21;break}if(l=t.getFeature(s)){e.next=17;break}return e.next=14,t.loadFeatures([{assemblyName:n,refName:i.refSeq,start:i.min,end:i.max}]);case 14:if(l=t.getFeature(s)){e.next=17;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 17:l.attributes.get("_id")||l.setAttribute("_id",[l._id]),l.addChild(i),e.next=22;break;case 21:t.addFeature(n,i);case 22:e.next=6;break;case 24:e.next=29;break;case 26:e.prev=26,e.t0=e.catch(4),r.e(e.t0);case 29:return e.prev=29,r.f(),e.finish(29);case 32:case"end":return e.stop()}}),e,this,[[4,26,29,32]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=fe(this.changedIds).reverse(),a=fe(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new Os.DeleteFeatureChange({changedIds:r,typeName:"DeleteFeatureChange",changes:a,assembly:e},{logger:n})}}]),o}(tr.FeatureChange);Ss.AddFeatureChange=Ts;var Ns={};Object.defineProperty(Ns,"__esModule",{value:!0}),Ns.AddFeaturesFromFileChange=void 0;var Is=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n,r;return K(this,o),Q(se(r=a.call(this,e,t)),"typeName","AddFeaturesFromFileChange"),Q(se(r),"changes",void 0),Q(se(r),"deleteExistingFeatures",!1),r.deleteExistingFeatures=null!==(n=e.deleteExistingFeatures)&&void 0!==n&&n,r.changes="changes"in e?e.changes:[e],r}return X(o,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:ue(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=t.fileModel,a=t.filesService,o=this.changes,i=this.logger,!this.deleteExistingFeatures){e.next=5;break}return e.next=5,this.removeExistingFeatures(t);case 5:s=ve(o),e.prev=6,s.s();case 8:if((l=s.n()).done){e.next=57;break}if(d=(u=l.value).fileId,f=u.parseOptions,Dt.env.FILE_UPLOAD_FOLDER){e.next=14;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 14:return e.next=16,r.findById(d).exec();case 16:if(p=e.sent){e.next=19;break}throw new Error('File "'.concat(d,'" not found in Mongo'));case 19:null===(c=i.debug)||void 0===c||c.call(i,'FileId "'.concat(d,'", checksum "').concat(p.checksum,'"')),m=void 0===(h=(null!=f?f:{}).bufferSize)?1e4:h,g=a.parseGFF3(a.getFileStream(p),{bufferSize:m}),y=0,v=!1,b=!1,e.prev=25,w=U(g);case 27:return e.next=29,w.next();case 29:if(!(v=!(x=e.sent).done)){e.next=39;break}return S=x.value,e.next=34,this.addFeatureIntoDb(S,t);case 34:++y%1e3==0&&(null===(E=i.debug)||void 0===E||E.call(i,"Processed ".concat(y," features")));case 36:v=!1,e.next=27;break;case 39:e.next=45;break;case 41:e.prev=41,e.t0=e.catch(25),b=!0,_=e.t0;case 45:if(e.prev=45,e.prev=46,!v||null==w.return){e.next=50;break}return e.next=50,w.return();case 50:if(e.prev=50,!b){e.next=53;break}throw _;case 53:return e.finish(50);case 54:return e.finish(45);case 55:e.next=8;break;case 57:e.next=62;break;case 59:e.prev=59,e.t1=e.catch(6),s.e(e.t1);case 62:return e.prev=62,s.f(),e.finish(62);case 65:null===(n=i.debug)||void 0===n||n.call(i,"New features added into database!");case 66:case"end":return e.stop()}}),e,this,[[6,59,62,65],[25,41,45,55],[46,,50,54]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new o({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),o}(kr.FromFileBaseChange);Ns.AddFeaturesFromFileChange=Is;var Rs={};Object.defineProperty(Rs,"__esModule",{value:!0}),Rs.AddRefSeqAliasesChange=void 0;var Fs=A.default,Ps=function(e){ee(r,e);var t,n=le(r);function r(e,t){var a;return K(this,r),Q(se(a=n.call(this,e,t)),"typeName","AddRefSeqAliasesChange"),Q(se(a),"refSeqAliases",void 0),a.refSeqAliases=e.refSeqAliases,a}return X(r,[{key:"executeOnClient",value:function(e){var t,n=(0,Fs.getSession)(e).assemblyManager.get(this.assembly);if(!n)throw new Error("assembly ".concat(this.assembly," not found"));var r,a=null!==(t=n.refNameAliases)&&void 0!==t?t:{},o=ve(this.refSeqAliases);try{for(o.s();!(r=o.n()).done;){var i,s=r.value,l=s.refName,c=ve(s.aliases);try{for(c.s();!(i=c.n()).done;)a[i.value]=l}catch(e){c.e(e)}finally{c.f()}}}catch(e){o.e(e)}finally{o.f()}return n.setRefNameAliases(a),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.refSeqModel,r=t.session,a=this.assembly,o=this.logger,i=ve(this.refSeqAliases),e.prev=3,i.s();case 5:if((s=i.n()).done){e.next=13;break}return c=s.value,null===(l=o.debug)||void 0===l||l.call(o,"Updating Refname alias for assembly: ".concat(a,", refSeqAlias: ").concat(JSON.stringify(c))),u=c.aliases,d=c.refName,e.next=11,n.updateOne({assembly:a,name:d},{$set:{aliases:u}}).session(r);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),i.e(e.t0);case 18:return e.prev=18,i.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]),r}(tr.AssemblySpecificChange);Rs.AddRefSeqAliasesChange=Ps;var Ms={};Object.defineProperty(Ms,"__esModule",{value:!0}),Ms.DeleteAssemblyChange=void 0;var Ds=A.default,js=function(e){ee(o,e);var t,n,r,a=le(o);function o(){var e;K(this,o);for(var t=arguments.length,n=new Array(t),r=0;r<t;r++)n[r]=arguments[r];return Q(se(e=a.call.apply(a,[this].concat(n))),"typeName","DeleteAssemblyChange"),e}return X(o,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.assemblyModel,a=t.featureModel,o=t.refSeqChunkModel,i=t.refSeqModel,s=t.session,l=this.assembly,c=this.logger,e.next=4,r.findById(l).session(s).exec();case 4:if(e.sent){e.next=9;break}throw u='*** ERROR: Assembly with id "'.concat(l,'" not found'),c.error(u),new Error(u);case 9:return e.next=11,i.find({assembly:l}).exec();case 11:return d=e.sent.map((function(e){return e._id})),e.next=15,o.deleteMany({refSeq:d}).exec();case 15:return e.next=17,a.deleteMany({refSeq:d}).exec();case 17:return e.next=19,i.deleteMany({assembly:l}).exec();case 19:return e.next=21,r.findByIdAndDelete(l).exec();case 21:null===(n=c.debug)||void 0===n||n.call(c,'Assembly "'.concat(l,'" deleted from database.'));case 22:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(a=this.assembly,t){e.next=3;break}throw new Error("No data store");case 3:return o=(0,Ds.getSession)(t),t.assemblies.has(a)&&t.deleteAssembly(a),e.next=7,null===(n=o.removeAssembly)||void 0===n?void 0:n.call(o,a);case 7:return e.next=9,null===(r=o.removeSessionAssembly)||void 0===r?void 0:r.call(o,a);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new o({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]),o}(tr.AssemblySpecificChange);Ms.DeleteAssemblyChange=js;var Ls={};Object.defineProperty(Ls,"__esModule",{value:!0}),Ls.DeleteUserChange=void 0;var qs=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","DeleteUserChange"),Q(se(n),"changes",void 0),Q(se(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return X(o,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n=t.session,r=t.userModel,a=this.logger,o=this.userId,e.next=4,r.findOneAndDelete({_id:o}).session(n).exec();case 4:if(e.sent){e.next=9;break}throw i='*** ERROR: User with id "'.concat(o,'" not found'),a.error(i),new Error(i);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new o({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]),o}(tr.Change);Ls.DeleteUserChange=qs;var Bs={};Object.defineProperty(Bs,"__esModule",{value:!0}),Bs.FeatureAttributeChange=void 0,Bs.isFeatureAttributeChange=function(e){return"FeatureAttributeChange"===e.typeName};var Us=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","FeatureAttributeChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:a.featureId,oldAttributes:a.oldAttributes,newAttributes:a.newAttributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],s=ve(a=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=26;break}return d=l.value.featureId,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(f=e.sent){e.next=16;break}throw p="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),o.error(p),new Error(p);case 16:if(null===(c=o.debug)||void 0===c||c.call(o,"*** Feature found: ".concat(JSON.stringify(f))),h=this.getFeatureFromId(f,d)){e.next=22;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:null===(u=o.debug)||void 0===u||u.call(o,"*** Found feature: ".concat(JSON.stringify(h))),i.push({feature:h,topLevelFeature:f});case 24:e.next=6;break;case 26:e.next=31;break;case 28:e.prev=28,e.t0=e.catch(4),s.e(e.t0);case 31:return e.prev=31,s.f(),e.finish(31);case 34:m=ve(a.entries()),e.prev=35,m.s();case 37:if((g=m.n()).done){e.next=55;break}return 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12:e.next=5;break;case 14:e.next=19;break;case 16:e.prev=16,e.t0=e.catch(3),n.e(e.t0);case 19:return e.prev=19,n.f(),e.finish(19);case 22:case"end":return e.stop()}}),e,this,[[3,16,19,22]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new o({changedIds:fe(this.changedIds).reverse(),typeName:r,changes:fe(t).reverse().map((function(e){return{featureId:e.featureId,oldStart:e.newStart,newStart:e.oldStart}})),assembly:e},{logger:n})}}]),o}(tr.FeatureChange);Ys.LocationStartChange=Ks;var Zs={},Xs={};Object.defineProperty(Xs,"__esModule",{value:!0}),Xs.splitStringIntoChunks=function(e,t){for(var n=[],r=0;r<e.length;r+=t){var a=e.slice(r,r+t);n.push(a)}return n},Xs.getPrintableId=function(e){var t,n,r=e,a=null===(t=r.attributes.get("gff_id"))||void 0===t?void 0:t.join(",");if(a)return"ID=".concat(a," (_id: ").concat(e._id.toString(),")");var o=null===(n=r.attributes.get("gff_name"))||void 0===n?void 0:n.join(",");return o?"Name=".concat(o," (_id: ").concat(e._id.toString(),")"):"_id: ".concat(e._id.toString())},Xs.attributesToRecords=function(e){var t={};if(!e)return t;for(var n=0,r=Object.entries(e);n<r.length;n++){var a=ue(r[n],2),o=a[1];t[a[0]]=null==o?void 0:o.slice()}return t},Xs.stringifyAttributes=function(e){if(!e)return"";for(var t=[],n=0,r=Object.entries(e);n<r.length;n++){var a=ue(r[n],2),o=a[1],i=a[0];i.startsWith("gff_")&&(i=(i=i.slice(4)).charAt(0).toUpperCase()+i.slice(1)),t.push(o?"".concat(i,"=").concat(o.join(",")):i)}return encodeURIComponent(t.join(";"))};var Qs={};Object.defineProperty(Qs,"__esModule",{value:!0}),Qs.UndoMergeExonsChange=void 0;var el=Zs,tl=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","UndoMergeExonsChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonsToRestore:a.exonsToRestore,parentFeatureId:a.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=ve(this.changes),e.prev=3,a.s();case 5:if((o=a.n()).done){e.next=25;break}if(l=(i=o.value).parentFeatureId,2===(s=i.exonsToRestore).length){e.next=10;break}throw new Error("Expected exactly two exons to restore. 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e.prev=25,n.f(),e.finish(25);case 28:case"end":return e.stop()}}),e,this,[[3,22,25,28]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,a=fe(this.changedIds).reverse(),o=fe(n).reverse().map((function(e){return{exonsToRestore:[e.firstExon,e.secondExon],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(o),"'")),new al.UndoMergeExonsChange({changedIds:a,typeName:"UndoMergeExonsChange",changes:o,assembly:t},{logger:r})}}]),o}(tr.FeatureChange);Zs.MergeExonsChange=ol;var il={},sl={};Object.defineProperty(sl,"__esModule",{value:!0}),sl.UndoMergeTranscriptsChange=void 0;var ll=il,cl=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","UndoMergeTranscriptsChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return 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n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=ve(this.changes),e.prev=4,a=V().mark((function e(){var n,a,o,i,s;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(a=(n=r.value).exonToRestore,i=n.idsToDelete,o=n.parentFeatureId){e.next=4;break}throw new Error("Parent ID is missing");case 4:if(s=t.getFeature(o)){e.next=7;break}throw new Error('Could not find parent feature "'.concat(o,'"'));case 7:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),s.addChild(a),i.map((function(e){s.deleteChild(e)}));case 10:case"end":return e.stop()}}),e)})),n.s();case 7:if((r=n.n()).done){e.next=11;break}return e.delegateYield(a(),"t0",9);case 9:e.next=7;break;case 11:e.next=16;break;case 13:e.prev=13,e.t1=e.catch(4),n.e(e.t1);case 16:return e.prev=16,n.f(),e.finish(16);case 19:case"end":return e.stop()}}),e,this,[[4,13,16,19]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=fe(this.changedIds).reverse(),a=fe(t).reverse().map((function(e){return{parentFeatureId:e.parentFeatureId,exonToBeSplit:e.exonToRestore,upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return new bl.SplitExonChange({changedIds:r,typeName:"SplitExonChange",changes:a,assembly:e},{logger:n})}}]),o}(tr.FeatureChange);yl.UndoSplitExonChange=_l,Object.defineProperty(gl,"__esModule",{value:!0}),gl.SplitExonChange=void 0;var wl=Es,xl=yl,Sl=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","SplitExonChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"notification",get:function(){return"Exon successfully split"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToBeSplit:a.exonToBeSplit,parentFeatureId:a.parentFeatureId,upstreamCut:a.upstreamCut,downstreamCut:a.downstreamCut,leftExonId:a.leftExonId,rightExonId:a.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l=this;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,o=ve(this.changes),e.prev=3,s=V().mark((function e(){var t,o,s,c,u,d,f,p,h,m,g,y,v,b,_;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return o=(t=i.value).exonToBeSplit,s=t.parentFeatureId,c=t.upstreamCut,u=t.downstreamCut,d=t.leftExonId,f=t.rightExonId,e.next=4,n.findOne({allIds:o._id}).session(r).exec();case 4:if(p=e.sent){e.next=9;break}throw h="*** ERROR: The following featureId was not found in database ='".concat(o._id,"'"),a.error(h),new Error(h);case 9:if(null!=(m=l.getFeatureFromId(p,s))&&m.children){e.next=12;break}throw new Error("ERROR: There should be at least one child (i.e. the exon to be split)");case 12:return g=l.makeSplitExons(o,c,u,d,f),y=ue(g,2),b=y[1],m.children.set((v=y[0])._id,$($({allIds:[]},v),{},{_id:v._id})),m.children.set(b._id,$($({allIds:[]},b),{},{_id:b._id})),m.children=new Map(fe(m.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),(_=(0,wl.findAndDeleteChildFeature)(p,o._id,l)).push(o._id),p.allIds=p.allIds.filter((function(e){return!_.includes(e)})),p.allIds.push(v._id,b._id),e.next=22,p.save();case 22:case"end":return e.stop()}}),e)})),o.s();case 6:if((i=o.n()).done){e.next=10;break}return e.delegateYield(s(),"t0",8);case 8:e.next=6;break;case 10:e.next=15;break;case 12:e.prev=12,e.t1=e.catch(3),o.e(e.t1);case 15:return e.prev=15,o.f(),e.finish(15);case 18:case"end":return e.stop()}}),e,this,[[3,12,15,18]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=ve(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=19;break}if(a=ue(r.value,1),i=(o=this.changes[a[0]]).exonToBeSplit,l=o.upstreamCut,c=o.downstreamCut,u=o.leftExonId,d=o.rightExonId,s=o.parentFeatureId){e.next=10;break}throw new Error("TODO: Split exon without parent");case 10:if(f=this.makeSplitExons(i,l,c,u,d),p=ue(f,2),h=p[0],m=p[1],g=t.getFeature(s)){e.next=14;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 14:g.addChild(h),g.addChild(m),t.getFeature(i._id)&&t.deleteFeature(i._id);case 17:e.next=5;break;case 19:e.next=24;break;case 21:e.prev=21,e.t0=e.catch(3),n.e(e.t0);case 24:return e.prev=24,n.f(),e.finish(24);case 27:case"end":return e.stop()}}),e,this,[[3,21,24,27]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,a=fe(this.changedIds).reverse(),o=fe(n).reverse().map((function(e){return{exonToRestore:e.exonToBeSplit,parentFeatureId:e.parentFeatureId,idsToDelete:[e.leftExonId,e.rightExonId],upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(o),"'")),new xl.UndoSplitExonChange({changedIds:a,typeName:"UndoSplitExonChange",changes:o,assembly:t},{logger:r})}},{key:"makeSplitExons",value:function(e,t,n,r,a){var o=JSON.parse(JSON.stringify(e));delete o.attributes._id,delete o.attributes.gff_id;var i=structuredClone(o);i._id=r,i.max=t;var s=structuredClone(o);return s.min=n,s._id=a,[i,s]}}]),o}(tr.FeatureChange);gl.SplitExonChange=Sl;var El={};Object.defineProperty(El,"__esModule",{value:!0}),El.StrandChange=void 0;var kl=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","StrandChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:a.featureId,oldStrand:a.oldStrand,newStrand:a.newStrand}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E,k;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],s=ve(a=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=30;break}return f=(d=l.value).featureId,p=d.oldStrand,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),o.error(m),new Error(m);case 16:if(null===(c=o.debug)||void 0===c||c.call(o,"*** Feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,f)){e.next=22;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=o.debug)||void 0===u||u.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.strand===p){e.next=27;break}throw y="*** ERROR: Feature's current strand \"".concat(h.strand,'" doesn\'t match with expected value "').concat(p,'"'),o.error(y),new Error(y);case 27:i.push({feature:g,topLevelFeature:h});case 28:e.next=6;break;case 30:e.next=35;break;case 32:e.prev=32,e.t0=e.catch(4),s.e(e.t0);case 35:return e.prev=35,s.f(),e.finish(35);case 38:v=ve(a.entries()),e.prev=39,v.s();case 41:if((b=v.n()).done){e.next=59;break}return w=ue(b.value,2),E=(x=i[w[0]]).topLevelFeature,(S=x.feature).strand=w[1].newStrand,E._id.equals(S._id)?E.markModified("strand"):E.markModified("children"),e.prev=47,e.next=50,E.save();case 50:e.next=56;break;case 52:throw e.prev=52,e.t1=e.catch(47),null===(k=o.debug)||void 0===k||k.call(o,"*** FAILED: ".concat(e.t1)),e.t1;case 56:null===(_=o.debug)||void 0===_||_.call(o,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(E)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=ve(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(a=ue(r.value,2),o=a[0],s=t.getFeature(i=a[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setStrand(this.changes[o].newStrand);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new o({changedIds:fe(this.changedIds).reverse(),typeName:r,changes:fe(t).reverse().map((function(e){return{featureId:e.featureId,oldStrand:e.newStrand,newStrand:e.oldStrand}})),assembly:e},{logger:n})}}]),o}(tr.FeatureChange);El.StrandChange=kl;var Cl={};Object.defineProperty(Cl,"__esModule",{value:!0}),Cl.TypeChange=void 0;var Al=function(e){ee(o,e);var t,n,r,a=le(o);function o(e,t){var n;return K(this,o),Q(se(n=a.call(this,e,t)),"typeName","TypeChange"),Q(se(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return X(o,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var a=ue(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:a.featureId,oldType:a.oldType,newType:a.newType}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f,p,h,m,g,y,v,b,_,w,x,S,E,k;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],s=ve(a=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=30;break}return f=(d=l.value).featureId,p=d.oldType,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),o.error(m),new Error(m);case 16:if(null===(c=o.debug)||void 0===c||c.call(o,"*** Feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,f)){e.next=22;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=o.debug)||void 0===u||u.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.type===p){e.next=27;break}throw y="*** ERROR: Feature's current type \"".concat(h.type,'" doesn\'t match with expected value "').concat(p,'"'),o.error(y),new Error(y);case 27:i.push({feature:g,topLevelFeature:h});case 28:e.next=6;break;case 30:e.next=35;break;case 32:e.prev=32,e.t0=e.catch(4),s.e(e.t0);case 35:return e.prev=35,s.f(),e.finish(35);case 38:v=ve(a.entries()),e.prev=39,v.s();case 41:if((b=v.n()).done){e.next=59;break}return w=ue(b.value,2),E=(x=i[w[0]]).topLevelFeature,(S=x.feature).type=w[1].newType,E._id.equals(S._id)?E.markModified("type"):E.markModified("children"),e.prev=47,e.next=50,E.save();case 50:e.next=56;break;case 52:throw e.prev=52,e.t1=e.catch(47),null===(k=o.debug)||void 0===k||k.call(o,"*** FAILED: ".concat(e.t1)),e.t1;case 56:null===(_=o.debug)||void 0===_||_.call(o,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(E)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){var n,r,a,o,i,s;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=ve(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(a=ue(r.value,2),o=a[0],s=t.getFeature(i=a[1])){e.next=10;break}throw new Error('Could not find feature with identifier 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X(o,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:ue(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"executeOnServer",value:(r=Y(V().mark((function e(t){var n,r,a,o,i,s,l,c,u,d,f;return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.session,r=t.userModel,o=this.logger,i=this.userId,s=ve(a=this.changes),e.prev=3,s.s();case 5:if((l=s.n()).done){e.next=18;break}return u=l.value,null===(c=o.debug)||void 0===c||c.call(o,"change: ".concat(JSON.stringify(a))),d=u.role,e.next=11,r.findByIdAndUpdate(i,{role:d}).session(n).exec();case 11:if(e.sent){e.next=16;break}throw f='*** ERROR: User with id "'.concat(i,'" not found'),o.error(f),new Error(f);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),s.e(e.t0);case 23:return e.prev=23,s.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Y(V().mark((function e(t){return V().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new o({typeName:this.typeName,changes:this.changes,userId:this.userId},{logger:this.logger})}}]),o}(tr.Change);Ol.UserChange=Tl,function(e){Object.defineProperty(e,"__esModule",{value:!0}),e.changes=void 0;var 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error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){tu||(tu=new TextDecoder);var n=[],r=0,a=-1,o=!1;return new TransformStream({transform:function(i,s){for(n.push(i);;){if(0===r){if(su(n)<1)break;var l=lu(n,1);o=128==(128&l[0]),r=(a=127&l[0])<126?3:126===a?1:2}else if(1===r){if(su(n)<2)break;var c=lu(n,2);a=new DataView(c.buffer,c.byteOffset,c.length).getUint16(0),r=3}else if(2===r){if(su(n)<8)break;var u=lu(n,8),d=new DataView(u.buffer,u.byteOffset,u.length),f=d.getUint32(0);if(f>Math.pow(2,21)-1){s.enqueue(Vc);break}a=f*Math.pow(2,32)+d.getUint32(4),r=3}else{if(su(n)<a)break;var p=lu(n,a);s.enqueue(ru(o?p:tu.decode(p),t)),r=0}if(0===a||a>e){s.enqueue(Vc);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),a=new TransformStream({transform:function(e,t){!function(e,t){Wc&&e.data instanceof Blob?e.data.arrayBuffer().then(Xc).then(t):Jc&&(e.data instanceof 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location&&"https:"===location.protocol,a.hostname&&!a.port&&(a.port=r.secure?"443":"80"),r.hostname=a.hostname||("undefined"!=typeof location?location.hostname:"localhost"),r.port=a.port||("undefined"!=typeof location&&location.port?location.port:r.secure?"443":"80"),r.transports=a.transports||["polling","websocket","webtransport"],r.writeBuffer=[],r.prevBufferLen=0,r.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},a),r.opts.path=r.opts.path.replace(/\/$/,"")+(r.opts.addTrailingSlash?"/":""),"string"==typeof r.opts.query&&(r.opts.query=function(e){for(var t={},n=e.split("&"),r=0,a=n.length;r<a;r++){var o=n[r].split("=");t[decodeURIComponent(o[0])]=decodeURIComponent(o[1])}return t}(r.opts.query)),r.id=null,r.upgrades=null,r.pingInterval=null,r.pingTimeout=null,r.pingTimeoutTimer=null,"function"==typeof addEventListener&&(r.opts.closeOnBeforeunload&&(r.beforeunloadEventListener=function(){r.transport&&(r.transport.removeAllListeners(),r.transport.close())},addEventListener("beforeunload",r.beforeunloadEventListener,!1)),"localhost"!==r.hostname&&(r.offlineEventListener=function(){r.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",r.offlineEventListener,!1))),r.open(),r}return X(n,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Du[e](n)}},{key:"open",value:function(){var e,t=this;if(this.opts.rememberUpgrade&&n.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){t.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var t=this,r=this.createTransport(e),a=!1;n.priorWebsocketSuccess=!1;var o=function(){a||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!a)if("pong"===e.type&&"probe"===e.data){if(t.upgrading=!0,t.emitReserved("upgrading",r),!r)return;n.priorWebsocketSuccess="websocket"===r.name,t.transport.pause((function(){a||"closed"!==t.readyState&&(d(),t.setTransport(r),r.send([{type:"upgrade"}]),t.emitReserved("upgrade",r),r=null,t.upgrading=!1,t.flush())}))}else{var o=new Error("probe error");o.transport=r.name,t.emitReserved("upgradeError",o)}})))};function i(){a||(a=!0,d(),r.close(),r=null)}var s=function(e){var n=new Error("probe error: "+e);n.transport=r.name,i(),t.emitReserved("upgradeError",n)};function l(){s("transport closed")}function c(){s("socket closed")}function u(e){r&&e.name!==r.name&&i()}var d=function(){r.removeListener("open",o),r.removeListener("error",s),r.removeListener("close",l),t.off("close",c),t.off("upgrading",u)};r.once("open",o),r.once("error",s),r.once("close",l),this.once("close",c),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){a||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",n.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,t=this.upgrades.length;e<t;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,a=e.length;r<a;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var a={type:e,data:t,options:n};this.emitReserved("packetCreate",a),this.writeBuffer.push(a),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function n(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){n.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}]),n}(cu);Bu.protocol=4;var Uu="function"==typeof ArrayBuffer,zu=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Gu=Object.prototype.toString,Hu="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Gu.call(Blob),$u="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Gu.call(File);function Vu(e){return Uu&&(e instanceof ArrayBuffer||zu(e))||Hu&&e instanceof Blob||$u&&e instanceof File}function Wu(e,t){if(!e||"object"!==W(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(Wu(e[n]))return!0;return!1}if(Vu(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return Wu(e.toJSON(),!0);for(var a in e)if(Object.prototype.hasOwnProperty.call(e,a)&&Wu(e[a]))return!0;return!1}function Ju(e){var t=[],n=e;return n.data=Yu(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function Yu(e,t){if(!e)return e;if(Vu(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),a=0;a<e.length;a++)r[a]=Yu(e[a],t);return r}if("object"===W(e)&&!(e instanceof Date)){var o={};for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(o[i]=Yu(e[i],t));return o}return e}function Ku(e,t){return e.data=Zu(e.data,t),delete e.attachments,e}function Zu(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=Zu(e[n],t);else if("object"===W(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=Zu(e[r],t));return e}var Xu,Qu=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(Xu||(Xu={}));var ed=function(){function e(t){K(this,e),this.replacer=t}return X(e,[{key:"encode",value:function(e){return e.type!==Xu.EVENT&&e.type!==Xu.ACK||!Wu(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===Xu.EVENT?Xu.BINARY_EVENT:Xu.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==Xu.BINARY_EVENT&&e.type!==Xu.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=Ju(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}]),e}();function td(e){return"[object Object]"===Object.prototype.toString.call(e)}var nd=function(e){ee(n,e);var t=le(n);function n(e){var r;return K(this,n),(r=t.call(this)).reviver=e,r}return X(n,[{key:"add",value:function(e){var t;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(t=this.decodeString(e)).type===Xu.BINARY_EVENT;r||t.type===Xu.BINARY_ACK?(t.type=r?Xu.EVENT:Xu.ACK,this.reconstructor=new rd(t),0===t.attachments&&ce(te(n.prototype),"emitReserved",this).call(this,"decoded",t)):ce(te(n.prototype),"emitReserved",this).call(this,"decoded",t)}else{if(!Vu(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(t=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,ce(te(n.prototype),"emitReserved",this).call(this,"decoded",t))}}},{key:"decodeString",value:function(e){var t=0,r={type:Number(e.charAt(0))};if(void 0===Xu[r.type])throw new Error("unknown packet type "+r.type);if(r.type===Xu.BINARY_EVENT||r.type===Xu.BINARY_ACK){for(var a=t+1;"-"!==e.charAt(++t)&&t!=e.length;);var o=e.substring(a,t);if(o!=Number(o)||"-"!==e.charAt(t))throw new Error("Illegal attachments");r.attachments=Number(o)}if("/"===e.charAt(t+1)){for(var i=t+1;++t&&","!==e.charAt(t)&&t!==e.length;);r.nsp=e.substring(i,t)}else r.nsp="/";var s=e.charAt(t+1);if(""!==s&&Number(s)==s){for(var l=t+1;++t;){var c=e.charAt(t);if(null==c||Number(c)!=c){--t;break}if(t===e.length)break}r.id=Number(e.substring(l,t+1))}if(e.charAt(++t)){var u=this.tryParse(e.substr(t));if(!n.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case Xu.CONNECT:return td(t);case Xu.DISCONNECT:return void 0===t;case Xu.CONNECT_ERROR:return"string"==typeof t||td(t);case Xu.EVENT:case Xu.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===Qu.indexOf(t[0]));case Xu.ACK:case Xu.BINARY_ACK:return Array.isArray(t)}}}]),n}(cu),rd=function(){function e(t){K(this,e),this.packet=t,this.buffers=[],this.reconPack=t}return X(e,[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=Ku(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}]),e}(),ad={__proto__:null,protocol:5,get PacketType(){return Xu},Encoder:ed,Decoder:nd};function od(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var id=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),sd=function(e){ee(n,e);var t=le(n);function n(e,r,a){var o;return K(this,n),(o=t.call(this)).connected=!1,o.recovered=!1,o.receiveBuffer=[],o.sendBuffer=[],o._queue=[],o._queueSeq=0,o.ids=0,o.acks={},o.flags={},o.io=e,o.nsp=r,a&&a.auth&&(o.auth=a.auth),o._opts=Object.assign({},a),o.io._autoConnect&&o.open(),o}return X(n,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[od(e,"open",this.onopen.bind(this)),od(e,"packet",this.onpacket.bind(this)),od(e,"error",this.onerror.bind(this)),od(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(id.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var a={type:Xu.EVENT,data:n,options:{}};if(a.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var o=this.ids++,i=n.pop();this._registerAckCallback(o,i),a.id=o}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(a),this.packet(a)):this.sendBuffer.push(a)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,a=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==a){var o=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),a);this.acks[e]=function(){r.io.clearTimeoutFn(o);for(var e=arguments.length,n=new Array(e),a=0;a<e;a++)n[a]=arguments[a];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),a=1;a<n;a++)r[a-1]=arguments[a];var o=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,a){r.push((function(e,t){return o?e?a(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var a=arguments.length,o=new Array(a>1?a-1:0),i=1;i<a;i++)o[i-1]=arguments[i];t.apply(void 0,[null].concat(o))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:Xu.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case Xu.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case Xu.EVENT:case Xu.BINARY_EVENT:this.onevent(e);break;case Xu.ACK:case Xu.BINARY_ACK:this.onack(e);break;case Xu.DISCONNECT:this.ondisconnect();break;case Xu.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var t,r=ve(this._anyListeners.slice());try{for(r.s();!(t=r.n()).done;)t.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}ce(te(n.prototype),"emit",this).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,a=new Array(r),o=0;o<r;o++)a[o]=arguments[o];t.packet({type:Xu.ACK,id:e,data:a})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:Xu.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=ve(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}]),n}(cu);function ld(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}ld.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},ld.prototype.reset=function(){this.attempts=0},ld.prototype.setMin=function(e){this.ms=e},ld.prototype.setMax=function(e){this.max=e},ld.prototype.setJitter=function(e){this.jitter=e};var cd=function(e){ee(n,e);var t=le(n);function n(e,r){var a,o;K(this,n),(a=t.call(this)).nsps={},a.subs=[],e&&"object"===W(e)&&(r=e,e=void 0),(r=r||{}).path=r.path||"/socket.io",a.opts=r,hu(se(a),r),a.reconnection(!1!==r.reconnection),a.reconnectionAttempts(r.reconnectionAttempts||Infinity),a.reconnectionDelay(r.reconnectionDelay||1e3),a.reconnectionDelayMax(r.reconnectionDelayMax||5e3),a.randomizationFactor(null!==(o=r.randomizationFactor)&&void 0!==o?o:.5),a.backoff=new ld({min:a.reconnectionDelay(),max:a.reconnectionDelayMax(),jitter:a.randomizationFactor()}),a.timeout(null==r.timeout?2e4:r.timeout),a._readyState="closed",a.uri=e;var i=r.parser||ad;return a.encoder=new i.Encoder,a.decoder=new i.Decoder,a._autoConnect=!1!==r.autoConnect,a._autoConnect&&a.open(),a}return X(n,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Bu(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var a=od(n,"open",(function(){r.onopen(),e&&e()})),o=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},i=od(n,"error",o);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){a(),o(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(a),this.subs.push(i),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(od(e,"ping",this.onping.bind(this)),od(e,"data",this.ondata.bind(this)),od(e,"error",this.onerror.bind(this)),od(e,"close",this.onclose.bind(this)),od(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Iu((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new sd(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var r=this.setTimeoutFn((function(){t.skipReconnect||(e.emitReserved("reconnect_attempt",t.backoff.attempts),t.skipReconnect||t.open((function(n){n?(t._reconnecting=!1,t.reconnect(),e.emitReserved("reconnect_error",n)):t.onreconnect()})))}),n);this.opts.autoUnref&&r.unref(),this.subs.push((function(){e.clearTimeoutFn(r)}))}}},{key:"onreconnect",value:function(){var e=this.backoff.attempts;this._reconnecting=!1,this.backoff.reset(),this.emitReserved("reconnect",e)}}]),n}(cu),ud={};function dd(e,t){"object"===W(e)&&(t=e,e=void 0);var n,r=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"",n=arguments.length>2?arguments[2]:void 0,r=e;n=n||"undefined"!=typeof location&&location,null==e&&(e=n.protocol+"//"+n.host),"string"==typeof e&&("/"===e.charAt(0)&&(e="/"===e.charAt(1)?n.protocol+e:n.host+e),/^(https?|wss?):\/\//.test(e)||(e=void 0!==n?n.protocol+"//"+e:"https://"+e),r=qu(e)),r.port||(/^(http|ws)$/.test(r.protocol)?r.port="80":/^(http|ws)s$/.test(r.protocol)&&(r.port="443")),r.path=r.path||"/";var a=-1!==r.host.indexOf(":")?"["+r.host+"]":r.host;return r.id=r.protocol+"://"+a+":"+r.port+t,r.href=r.protocol+"://"+a+(n&&n.port===r.port?"":":"+r.port),r}(e,(t=t||{}).path||"/socket.io"),a=r.source,o=r.id;return t.forceNew||t["force new connection"]||!1===t.multiplex||ud[o]&&r.path in ud[o].nsps?n=new cd(a,t):(ud[o]||(ud[o]=new cd(a,t)),n=ud[o]),r.query&&!t.query&&(t.query=r.queryKey),n.socket(r.path,t)}Object.assign(dd,{Manager:cd,Socket:sd,io:dd,connect:dd});var fd=s.createSvgIcon([i.jsx("path",{d:"M17 11c.34 0 .67.04 1 .09V6.27L10.5 3 3 6.27v4.91c0 4.54 3.2 8.79 7.5 9.82.55-.13 1.08-.32 1.6-.55-.69-.98-1.1-2.17-1.1-3.45 0-3.31 2.69-6 6-6"},"0"),i.jsx("path",{d:"M17 13c-2.21 0-4 1.79-4 4s1.79 4 4 4 4-1.79 4-4-1.79-4-4-4m0 1.38c.62 0 1.12.51 1.12 1.12s-.51 1.12-1.12 1.12-1.12-.51-1.12-1.12.5-1.12 1.12-1.12m0 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Cd(/[\n\r\t%\u0000-\u001f\u007f]/g,e)}function Td(e){if(null==e||!e.length||"."===e)return{};var t={};return e.replace(/\r\n|[\r\n]$/,"").split(";").forEach((function(e){var n,r,a=e.split("=",2);if(null!==(n=a[1])&&void 0!==n&&n.length){a[0]=a[0].trim();var o=t[a[0].trim()];o||(t[a[0]]=o=[]),(r=o).push.apply(r,fe(a[1].split(",").map((function(e){return e.trim()})).map(kd)))}})),t}function Nd(e){var t=[];return Object.entries(e).forEach((function(e){var n=ue(e,2),r=n[0],a=n[1].map(Ad).join(",");t.push("".concat(Ad(r),"=").concat(a))})),t.length?t.join(";"):"."}function Id(e,t){var n=null==e.attributes?".":Nd(e.attributes),r=[null===e.seq_id?".":Od(e.seq_id),null===e.source?".":Od(e.source),null===e.type?".":Od(e.type),null===e.start?".":Od(e.start),null===e.end?".":Od(e.end),null===e.score?".":Od(e.score),null===e.strand?".":Od(e.strand),null===e.phase?".":Od(e.phase),n],a="".concat(r.join("\t"),"\n");return t[a]?"":(t[a]=!0,a)}function Rd(e,t){if(Array.isArray(e))return e.map((function(e){return Rd(e,t)})).join("");var n,r=[Id(e,t)];return void 0!==(n=e).child_features&&void 0!==n.derived_features&&r.push.apply(r,fe(e.child_features.map((function(e){return Rd(e,t)}))).concat(fe(e.derived_features.map((function(e){return Rd(e,t)}))))),r.join("")}function Fd(e){return Rd(e,{})}function Pd(e){var t="##".concat(e.directive);return e.value&&(t+=" ".concat(e.value)),t+"\n"}function Md(e){return"# ".concat(e.comment,"\n")}function Dd(e){for(var t=">".concat(e.id).concat(e.description?" ".concat(e.description):"","\n"),n=Math.ceil(e.sequence.length/80),r=new Array(n),a=0;a<n;a+=1){var o=80*a;r[a]=e.sequence.slice(o,o+80)}return"".concat(t).concat(r.join("\n"),"\n")}function jd(e){return"attributes"in e?Fd(e):"directive"in e?Pd(e):"sequence"in e?Dd(e):"comment"in e?Md(e):"# (invalid item found during format)\n"}Object.defineProperty(Ed,"__esModule",{value:!0}),Ed.unescape=kd,Ed.escape=Ad,Ed.escapeColumn=Od,Ed.parseAttributes=Td,Ed.parseFeature=function(e){var t=e.trim().split("\t").map((function(e){return"."===e||""===e?null:e}));return{seq_id:t[0]&&kd(t[0]),source:t[1]&&kd(t[1]),type:t[2]&&kd(t[2]),start:null===t[3]?null:parseInt(t[3],10),end:null===t[4]?null:parseInt(t[4],10),score:null===t[5]?null:parseFloat(t[5]),strand:t[6],phase:t[7],attributes:null===t[8]?null:Td(t[8])}},Ed.parseDirective=function(e){var t=/^\s*##\s*(\S+)\s*(.*)/.exec(e);if(!t)return null;var n=ue(t,2)[1],r=ue(t,3)[2],a={directive:n};if(r.length&&(r=r.replace(/\r\n|[\r\n]$/,""),a.value=r),"sequence-region"===n){var o,i,s=r.split(/\s+/,3);return $($({},a),{},{seq_id:s[0],start:null===(o=s[1])||void 0===o?void 0:o.replaceAll(/\D/g,""),end:null===(i=s[2])||void 0===i?void 0:i.replaceAll(/\D/g,"")})}if("genome-build"===n){var l=ue(r.split(/\s+/,2),2),c=l[0],u=l[1];return $($({},a),{},{source:c,buildName:u})}return a},Ed.formatAttributes=Nd,Ed.formatFeature=Fd,Ed.formatDirective=Pd,Ed.formatComment=Md,Ed.formatSequence=Dd,Ed.formatItem=function(e){return Array.isArray(e)?e.map(jd):jd(e)},Object.defineProperty(Sd,"__esModule",{value:!0}),Sd.GFF3Parser=Sd.FASTAParser=void 0;var Ld=Ed,qd=function(){function e(){var t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:function(){};K(this,e),Q(this,"seqCallback",void 0),Q(this,"currentSequence",void 0),this.seqCallback=t,this.currentSequence=void 0}return X(e,[{key:"addLine",value:function(e){var t=/^>\s*(\S+)\s*(.*)/.exec(e);t?(this.flush(),this.currentSequence={id:t[1],sequence:""},t[2]&&(this.currentSequence.description=t[2].trim())):this.currentSequence&&/\S/.test(e)&&(this.currentSequence.sequence+=e.replaceAll(/\s/g,""))}},{key:"flush",value:function(){this.currentSequence&&this.seqCallback(this.currentSequence)}},{key:"finish",value:function(){this.flush()}}]),e}();Sd.FASTAParser=qd;var Bd=function(){function e(t){K(this,e),Q(this,"endCallback",void 0),Q(this,"disableDerivesFromReferences",void 0),Q(this,"bufferSize",void 0),Q(this,"fastaParser",void 0),Q(this,"eof",!1),Q(this,"lineNumber",0),Q(this,"underConstructionTopLevel",[]),Q(this,"underConstructionById",{}),Q(this,"completedReferences",{}),Q(this,"underConstructionOrphans",new Map),this.endCallback=t.endCallback||function(){},this.disableDerivesFromReferences=t.disableDerivesFromReferences||!1,this.bufferSize=void 0===t.bufferSize?Infinity:t.bufferSize}return X(e,[{key:"addLine",value:function(e,t){if(this.fastaParser)this.fastaParser.addLine(e);else if(!this.eof)if(this.lineNumber+=1,/^\s*[^#\s>]/.test(e))this.bufferLine(e,t);else{var n=/^\s*(#+)(.*)/.exec(e);if(n){var r=ue(n,2)[1],a=ue(n,3)[2];if(3===r.length)this.emitAllUnderConstructionFeatures(t);else if(2===r.length){var o=(0,Ld.parseDirective)(e);o&&("FASTA"===o.directive?(this.emitAllUnderConstructionFeatures(t),this.eof=!0,this.fastaParser=new qd(t.sequenceCallback)):this.emitItem(o,t))}else a=a.replace(/\s*/,""),this.emitItem({comment:a},t)}else if(/^\s*$/.test(e));else{if(!/^\s*>/.test(e)){var i=e.replaceAll(/\r\n|[\r\n]$/g,"");throw new Error("GFF3 parse error. Cannot parse '".concat(i,"'."))}this.emitAllUnderConstructionFeatures(t),this.eof=!0,this.fastaParser=new qd(t.sequenceCallback),this.fastaParser.addLine(e)}}}},{key:"finish",value:function(e){this.emitAllUnderConstructionFeatures(e),this.fastaParser&&this.fastaParser.finish(),this.endCallback()}},{key:"emitItem",value:function(e,t){Array.isArray(e)&&t.featureCallback?t.featureCallback(e):"directive"in e&&t.directiveCallback?t.directiveCallback(e):"comment"in e&&t.commentCallback&&t.commentCallback(e)}},{key:"enforceBufferSizeLimit",value:function(){for(var e=this,t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:0,n=arguments.length>1?arguments[1]:void 0,r=function t(n){var r;n&&Array.isArray(n)&&null!==(r=n[0].attributes)&&void 0!==r&&null!==(r=r.ID)&&void 0!==r&&r[0]&&(n[0].attributes.ID.forEach((function(t){delete e.underConstructionById[t],delete e.completedReferences[t]})),n.forEach((function(e){e.child_features&&e.child_features.forEach((function(e){return t(e)})),e.derived_features&&e.derived_features.forEach((function(e){return t(e)}))})))};this.underConstructionTopLevel.length+t>this.bufferSize;){var a=this.underConstructionTopLevel.shift();a&&(this.emitItem(a,n),r(a))}}},{key:"emitAllUnderConstructionFeatures",value:function(e){var t=this;if(this.underConstructionTopLevel.forEach((function(n){return t.emitItem.bind(t)(n,e)})),this.underConstructionTopLevel=[],this.underConstructionById={},this.completedReferences={},this.underConstructionOrphans.size)throw new Error("some features reference other features that do not exist in the file (or in the same '###' scope). ".concat(Array.from(this.underConstructionOrphans.keys()).join(",")))}},{key:"bufferLine",value:function(e,t){var n,r,a,o=this,i=$($({},(0,Ld.parseFeature)(e)),{},{child_features:[],derived_features:[]}),s=(null===(n=i.attributes)||void 0===n?void 0:n.ID)||[],l=(null===(r=i.attributes)||void 0===r?void 0:r.Parent)||[],c=this.disableDerivesFromReferences?[]:(null===(a=i.attributes)||void 0===a?void 0:a.Derives_from)||[];if(s.length||l.length||c.length){var u=void 0;s.forEach((function(e){var n=o.underConstructionById[e];n?(n[n.length-1].type!==i.type&&o.parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(i.type,'", "').concat(n[n.length-1].type,'"'),t),n.push(i),u=n):(u=[i],o.enforceBufferSizeLimit(1,t),l.length||c.length||o.underConstructionTopLevel.push(u),o.underConstructionById[e]=u,o.resolveReferencesTo(u,e))})),this.resolveReferencesFrom(u||[i],{Parent:l,Derives_from:c},s)}else this.emitItem([i],t)}},{key:"resolveReferencesTo",value:function(e,t){var n=this.underConstructionOrphans.get(t);n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,fe(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,fe(n.Derives_from))})),this.underConstructionOrphans.delete(t))}},{key:"parseError",value:function(e,t){var n;this.eof=!0,null===(n=t.errorCallback)||void 0===n||n.call(t,"".concat(this.lineNumber,": ").concat(e))}},{key:"postSet",value:function(e,t,n){var r=e[t];r||(e[t]=r={});var a=r[n]||!1;return r[n]=!0,a}},{key:"resolveReferencesFrom",value:function(e,t,n){var r=this;t.Parent.forEach((function(t){var a=r.underConstructionById[t];if(a)n.filter((function(e){return r.postSet(r.completedReferences,e,"Parent,".concat(t))})).length||a.forEach((function(t){t.child_features.push(e)}));else{var o=r.underConstructionOrphans.get(t);o||r.underConstructionOrphans.set(t,o={Parent:[],Derives_from:[]}),o.Parent.push(e)}})),t.Derives_from.forEach((function(t){var a=r.underConstructionById[t];if(a)n.filter((function(e){return r.postSet(r.completedReferences,e,"Derives_from,".concat(t))})).length||a.forEach((function(t){t.derived_features.push(e)}));else{var o=r.underConstructionOrphans.get(t);o||r.underConstructionOrphans.set(t,o={Parent:[],Derives_from:[]}),o.Derives_from.push(e)}}))}}]),e}();Sd.GFF3Parser=Bd,Object.defineProperty(xd,"__esModule",{value:!0}),xd.GFFFormattingTransformer=xd.GFFTransformer=void 0,xd.parseStringSync=function(e,t){if(!e)return[];var n=Gd(null!=t?t:{}),r=[],a=r.push.bind(r),o={errorCallback:function(e){throw new Error(e)}};n.parseFeatures&&(o.featureCallback=a),n.parseDirectives&&(o.directiveCallback=a),n.parseComments&&(o.commentCallback=a),n.parseSequences&&(o.sequenceCallback=a);var i=new Ud.GFF3Parser({disableDerivesFromReferences:n.disableDerivesFromReferences||!1,bufferSize:Infinity});return e.split(/\r\n|[\r\n]/).forEach((function(e){return i.addLine.bind(i)(e,o)})),i.finish(o),r},xd.formatSync=function(e){var t=[],n=[];e.forEach((function(e){"sequence"in e?n.push(e):t.push(e)}));var r=t.map((function(e){return Array.isArray(e)?(0,zd.formatItem)(e).join(""):(0,zd.formatItem)(e)})).join("");return n.length&&(r+="##FASTA\n",r+=n.map(zd.formatSequence).join("")),r};var Ud=Sd,zd=Ed;function Gd(e){return $({parseFeatures:!0,parseDirectives:!1,parseSequences:!0,parseComments:!1,bufferSize:Infinity,disableDerivesFromReferences:!1},e)}var Hd=function(){function e(t){K(this,e),Q(this,"decoder",void 0),Q(this,"parser",void 0),Q(this,"lastString",""),Q(this,"parseFeatures",void 0),Q(this,"parseDirectives",void 0),Q(this,"parseComments",void 0),Q(this,"parseSequences",void 0),this.decoder=new TextDecoder;var n=Gd(null!=t?t:{});this.parser=new Ud.GFF3Parser({bufferSize:n.bufferSize,disableDerivesFromReferences:n.disableDerivesFromReferences}),this.parseFeatures=n.parseFeatures,this.parseDirectives=n.parseDirectives,this.parseComments=n.parseComments,this.parseSequences=n.parseSequences}return X(e,[{key:"makeCallbacks",value:function(e){var t={errorCallback:this.emitErrorMessage.bind(this,e)};return this.parseFeatures&&(t.featureCallback=function(t){e.enqueue(t)}),this.parseDirectives&&(t.directiveCallback=function(t){e.enqueue(t)}),this.parseComments&&(t.commentCallback=function(t){e.enqueue(t)}),this.parseSequences&&(t.sequenceCallback=function(t){e.enqueue(t)}),t}},{key:"emitErrorMessage",value:function(e,t){e.error(t)}},{key:"transform",value:function(e,t){var n="".concat(this.lastString).concat(this.decoder.decode(e,{stream:!0})).split(/\r\n|[\r\n]/g);this.lastString=n.pop()||"";var r,a=ve(n);try{for(a.s();!(r=a.n()).done;)this.parser.addLine(r.value,this.makeCallbacks(t))}catch(e){a.e(e)}finally{a.f()}}},{key:"flush",value:function(e){var t=this.makeCallbacks(e);this.lastString="".concat(this.lastString).concat(this.decoder.decode()),this.lastString&&(this.parser.addLine(this.lastString,t),this.lastString=""),this.parser.finish(t)}}]),e}();xd.GFFTransformer=Hd;var $d=function(){function e(){var t=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};K(this,e),Q(this,"linesSinceLastSyncMark",0),Q(this,"haveWeEmittedData",!1),Q(this,"fastaMode",!1),Q(this,"minLinesBetweenSyncMarks",void 0),Q(this,"insertVersionDirective",void 0),this.minLinesBetweenSyncMarks=t.minSyncLines||100,this.insertVersionDirective=!1!==t.insertVersionDirective}return X(e,[{key:"transform",value:function(e,t){!this.haveWeEmittedData&&this.insertVersionDirective&&(!("directive"in e)||"directive"in e&&"gff-version"!==e.directive)&&t.enqueue("##gff-version 3\n"),"sequence"in e&&!this.fastaMode&&(t.enqueue("##FASTA\n"),this.fastaMode=!0);var n=Array.isArray(e)?e.map((function(e){return(0,zd.formatItem)(e)})).join(""):(0,zd.formatItem)(e);if(t.enqueue(n),this.linesSinceLastSyncMark>=this.minLinesBetweenSyncMarks)t.enqueue("###\n"),this.linesSinceLastSyncMark=0;else{for(var r=0,a=0;a<n.length;a+=1)"\n"===n[a]&&(r+=1);this.linesSinceLastSyncMark+=r}this.haveWeEmittedData=!0}}]),e}();async function Vd(e,t,n){const r=wd.parseStringSync(t,{parseSequences:!0,parseComments:!0,parseDirectives:!1,parseFeatures:!0});if(0===r.length)throw new Error("No features found in GFF3 file");let a=0,o=n.assemblies.get(e);o||(o=n.addAssembly(e,"InMemoryFileDriver"));for(const e of r)if(Array.isArray(e)){const t=Xn.gff3ToAnnotationFeature(e),n=o.refSeqs.get(t.refSeq)??o.addRefSeq(t.refSeq,t.refSeq);n.features.has(t._id)||n.addFeature(t)}else if("comment"in e)o.addComment(e.comment);else{a++;let t=o.refSeqs.get(e.id);t||(t=o.addRefSeq(e.id,e.id,e.description)),e.description&&!t.description&&t.setDescription(e.description),t.addSequence({start:0,stop:e.sequence.length,sequence:e.sequence})}if(0===a)throw new Error("No embedded FASTA section found in GFF3");const i=await Wd(o);return n.addCheckResults(i),o}async function Wd(e){const t=[];for(const n of e.refSeqs.values())for(const e of n.features.values())for(const a of L.checkRegistry.getChecks().values()){const o=await a.checkFeature(r.getSnapshot(e),((e,t)=>Promise.resolve(n.getSequence(e,t))));t.push(...o)}return t}function Jd(e){const{attributes:t}=e,n=t.get("gff_name");return n?n[0]:""}function Yd(e){const{attributes:t}=e,n=t.get("gff_id"),r=t.get("transcript_id"),a=t.get("exon_id"),o=t.get("protein_id");return n?n[0]:r?r[0]:a?a[0]:o?o[0]:""}function Kd(e){const t=Jd(e),n=Yd(e);return t?`: ${t}`:n?`: ${n}`:""}function Zd(e,t,n=!1){const r=[];r.push(e);for(const t of function(e){const t=[];let{parent:n}=e;for(;n;)t.push(n),({parent:n}=n);return t}(e))r.push(t);const a=function(e){const t=[];if(e.children)for(const[,n]of e.children)t.push(n);return t}(e);for(const e of a)e.min<t&&e.max>=t&&r.push(e);if(!n)return r;if(e.parent){const n=e.parent.children;if(n)for(const[,a]of n)a._id!=e._id&&a.min<t&&a.max>=t&&r.push(a)}return r}xd.GFFFormattingTransformer=$d,function(e){var t=M&&M.__createBinding||(Object.create?function(e,t,n,r){void 0===r&&(r=n);var a=Object.getOwnPropertyDescriptor(t,n);a&&!("get"in a?!t.__esModule:a.writable||a.configurable)||(a={enumerable:!0,get:function(){return t[n]}}),Object.defineProperty(e,r,a)}:function(e,t,n,r){void 0===r&&(r=n),e[r]=t[n]}),n=M&&M.__setModuleDefault||(Object.create?function(e,t){Object.defineProperty(e,"default",{enumerable:!0,value:t})}:function(e,t){e.default=t}),r=M&&M.__importStar||function(){var e=function(t){return e=Object.getOwnPropertyNames||function(e){var t=[];for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[t.length]=n);return t},e(t)};return function(r){if(r&&r.__esModule)return r;var a={};if(null!=r)for(var o=e(r),i=0;i<o.length;i++)"default"!==o[i]&&t(a,r,o[i]);return n(a,r),a}}(),a=M&&M.__exportStar||function(e,n){for(var r in e)"default"===r||Object.prototype.hasOwnProperty.call(n,r)||t(n,e,r)};Object.defineProperty(e,"__esModule",{value:!0}),e.util=e.defaultExport=void 0;var o=r(xd);a(xd,e);var i=r(Ed);e.defaultExport=$($({},o),{},{util:i}),e.default=e.defaultExport,e.util=r(Ed)}(wd);var Xd=s.createSvgIcon(i.jsx("path",{d:"m7.58 16.89 5.77-4.07c.56-.4.56-1.24 0-1.63L7.58 7.11C6.91 6.65 6 7.12 6 7.93v8.14c0 .81.91 1.28 1.58.82M16 7v10c0 .55.45 1 1 1s1-.45 1-1V7c0-.55-.45-1-1-1s-1 .45-1 1"}),"SkipNextRounded"),Qd=s.createSvgIcon(i.jsx("path",{d:"M7 6c.55 0 1 .45 1 1v10c0 .55-.45 1-1 1s-1-.45-1-1V7c0-.55.45-1 1-1m3.66 6.82 5.77 4.07c.66.47 1.58-.01 1.58-.82V7.93c0-.81-.91-1.28-1.58-.82l-5.77 4.07c-.57.4-.57 1.24 0 1.64"}),"SkipPreviousRounded");function ef(e,t){if(e.apolloDragging)return;e.setSelectedFeature(t);const{session:n}=e,{apolloDataStore:r}=n,{featureTypeOntology:a}=r.ontologyManager;if(!a)throw new Error("featureTypeOntology is undefined");let o=!1;for(const[,e]of t.children??[])if(a.isTypeOf(e.type,"CDS")||a.isTypeOf(e.type,"exon")){o=!0;break}(a.isTypeOf(t.type,"transcript")||a.isTypeOf(t.type,"pseudogenic_transcript"))&&o?e.showFeatureDetailsWidget(t,["ApolloTranscriptDetails","apolloTranscriptDetails"]):e.showFeatureDetailsWidget(t)}function tf(e,t){const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogenic_transcript")}function nf(e,t){const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"exon")}function rf(e,t){const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"CDS")}function af(e,t,r,a){const o=n.getContainingView(t),i=r.bp-o.bpPerPx*r.x,s=i+o.coarseTotalBp;if(!e.parent)return{upstream:void 0,downstream:void 0};const l=e.parent;if(!l.children)throw new Error(`Error getting children of ${l._id}`);const{featureTypeOntology:c}=a.apolloDataStore.ontologyManager;if(!c)throw new Error("featureTypeOntology is undefined");let u=[];for(const[,e]of l.children)c.isTypeOf(e.type,"exon")&&u.push(e);const d={upstream:void 0,downstream:void 0};u=u.sort(((e,t)=>e.min<t.min?-1:1));for(const e of u)if(e.min>s){d.downstream=e;break}u=u.sort(((e,t)=>e.min>t.min?-1:1));for(const e of u)if(e.max<i){d.upstream=e;break}if(-1===l.strand){const e=d.downstream;d.downstream=d.upstream,d.upstream=e}return d}function of(e,t,n){let r=Xd;return-1===e&&(r=Qd),t&&(r=r===Qd?Xd:Qd),n&&(r=r===Qd?Xd:Qd),r}function sf(e,t,n,r){const a=r.bpToPx({refName:t,coord:e.min,regionNumber:n}),o=r.bpToPx({refName:t,coord:e.max,regionNumber:n});if(void 0===a||void 0===o)return;const{offsetPx:i}=r;return[a.offsetPx-i,o.offsetPx-i]}function lf(e,t,n){const[r,a]=n;if(!(Math.abs(a-r)<8))return 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feature",disabled:d,onClick:()=>{s.queueDialog((e=>[FT,{session:s,handleClose:()=>{e()},changeManager:a,sourceFeature:t,sourceAssemblyId:p,internetAccount:r}]))}},{label:"Copy features and annotations",disabled:d,onClick:()=>{s.queueDialog((e=>[GT,{session:s,handleClose:()=>{e()},changeManager:a,sourceFeature:t,sourceAssemblyId:h}]))}},{label:"Delete feature",disabled:!u,onClick:()=>{s.queueDialog((n=>[$T,{session:s,handleClose:()=>{n()},changeManager:a,sourceFeature:t,sourceAssemblyId:h,selectedFeature:i,setSelectedFeature:t=>{e.setSelectedFeature(t)}}]))}}),n.isSessionModelWithWidgets(s)&&l.push({label:"Open feature details",onClick:()=>{const e=s.addWidget("ApolloFeatureDetailsWidget","apolloFeatureDetailsWidget",{feature:t,assembly:h,refName:f.refName});s.showWidget(e)}}),l}function pf(e,t,n){const r=(e.max-e.min)*t,a=Math.max(e.min-r,1),o=Math.min(e.max+r,n);return{refName:e.refSeq,start:a,end:o}}function hf(e,t,n){const r=[{featureId:e._id,oldLocation:e[n],newLocation:t}],{parent:a}=e;return a&&("min"===n&&a[n]>t||"max"===n&&a[n]<t)&&r.push(...hf(a,t,n)),r}function mf(e,t,n,r,a){const o=e._id,i=[{featureId:o,oldLocation:e[n],newLocation:t}],{parent:s,children:l}=e;if(l)for(const[,e]of l)e._id!==a&&("min"===n&&e[n]<t||"max"===n&&e[n]>t)&&i.push(...mf(e,t,n,r));if(s&&r){const e=[];if(s.children)for(const[,t]of s.children)t._id!==o&&e.push(t);if(0===e.length)i.push(...mf(s,t,n,r,o));else{const a=s[n],l=Math[n](...e.map((e=>e[n])),t);l!==a&&i.push(...mf(s,l,n,r,o))}}return i}function gf(e,t,n,r=!1){const a=e[n];if(t===a)throw new Error(`New and existing locations are the same: "${t}"`);return"min"===n?t>a?mf(e,t,n,r):hf(e,t,n):t<a?mf(e,t,n,r):hf(e,t,n)}function yf(e){return"feature"in e}function vf(e,t){const n=e.currentTarget,{clientX:r,clientY:a}=e,{left:o,top:i}=n.getBoundingClientRect(),s=r-o,l=a-i,{coord:c,index:u,refName:d}=t.pxToBp(s);return{x:s,y:l,refName:d,bp:c,regionNumber:u}}async function bf(e,t){let n;try{n=await e.text()}catch{n=""}return`${t?`${t} — `:""}${e.status} ${e.statusText}${n?` (${n})`:""}`}var _f=s.createSvgIcon(i.jsx("path",{d:"M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"}),"Close");const wf=d.makeStyles()((e=>({dialogTitle:{background:e.palette.primary.main,color:e.palette.primary.contrastText,padding:e.spacing(2)},closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1.5),color:e.palette.primary.contrastText}}))),xf=h.observer((function(e){const{classes:t}=wf(),{handleClose:n,title:r,...a}=e;return T.default.createElement(p.Dialog,{...a,header:T.default.createElement(T.default.Fragment,null,T.default.createElement(l.DialogTitle,{className:t.dialogTitle},r),T.default.createElement(l.IconButton,{"aria-label":"close",onClick:n,className:t.closeButton},T.default.createElement(_f,null)))})}));var Sf;!function(e){e.GFF3="text/x-gff3",e.FASTA="text/x-fasta",e.BGZIP_FASTA="application/x-bgzip-fasta",e.FAI="text/x-fai",e.GZI="application/x-gzi",e.EXTERNAL="text/x-external"}(Sf||(Sf={}));const Ef=d.makeStyles()((e=>({accordion:{border:`1px solid ${e.palette.divider}`,"&:not(:last-child)":{borderBottom:0}},accordionSummary:{flexDirection:"row-reverse"},accordionDetails:{padding:e.spacing(2),borderTop:"1px solid rgba(0, 0, 0, .125)"},radioIcon:{color:e.palette.tertiary.contrastText},dialog:{minWidth:550,maxWidth:800}})));function kf(e,t,n,r,a,o,i,s,l){return!(!e||!(t&&r||n===Sf.GFF3&&r||r&&a&&o||i&&s&&l))}function Cf({changeManager:e,handleClose:t,session:n}){const{classes:o}=Ef(),{internetAccounts:i}=r.getRoot(n),{notify:s}=n,c=i.filter((e=>"ApolloInternetAccount"===e.type));if(0===c.length)throw new Error("No Apollo internet account 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r;if(n.preventDefault(),h(""),E(!0),q(!0),s(`Assembly "${d}" is being added`,"info"),t(),n.preventDefault(),y===Sf.EXTERNAL)r=new Xn.AddAssemblyFromExternalChange({typeName:"AddAssemblyFromExternalChange",assembly:(new Hn).toHexString(),assemblyName:d,externalLocation:{fa:R,fai:P,gzi:D}});else{if(!k)throw new Error("Missing fasta file");if(y===Sf.GFF3&&b){const e=await H(k,Sf.GFF3);r=new Xn.AddAssemblyAndFeaturesFromFileChange({typeName:"AddAssemblyAndFeaturesFromFileChange",assembly:(new Hn).toHexString(),assemblyName:d,fileIds:{fa:e}})}else if(y===Sf.GFF3){const e=await H(k,Sf.GFF3);r=new Xn.AddAssemblyFromFileChange({typeName:"AddAssemblyFromFileChange",assembly:(new Hn).toHexString(),assemblyName:d,fileIds:{fa:e}})}else if(w){const e=await H(k,Sf.FASTA);r=new Xn.AddAssemblyFromFileChange({typeName:"AddAssemblyFromFileChange",assembly:(new Hn).toHexString(),assemblyName:d,fileIds:{fa:e}})}else{if(!A||!N)throw new Error("Missing fasta index files");const e=await H(k,Sf.BGZIP_FASTA),t=await H(A,Sf.FAI),n=await H(N,Sf.GZI);r=new Xn.AddAssemblyFromFileChange({typeName:"AddAssemblyFromFileChange",assembly:(new Hn).toHexString(),assemblyName:d,fileIds:{fa:e,fai:t,gzi:n}})}}const[{internetAccountId:a}]=c;await e.submit(r,{internetAccountId:a,updateJobsManager:!0}),E(!1),q(!1)},"data-testid":"submit-form"},T.default.createElement(l.DialogContent,{className:o.dialog},L?T.default.createElement(l.LinearProgress,null):null,T.default.createElement(l.TextField,{margin:"dense",id:"name",label:"Assembly name",type:"TextField",fullWidth:!0,variant:"outlined",onChange:e=>{E(!1),f(e.target.value),function(e){const{assemblies:t}=n;t.find((t=>a.readConfObject(t,"displayName")===e))?(g(!1),h(`Assembly ${e} already exists.`)):(g(!0),h(""))}(e.target.value)},disabled:S&&!p}),T.default.createElement(l.Accordion,{disableGutters:!0,elevation:0,square:!0,className:o.accordion,expanded:"panelFastaInput"===J,onChange:K("panelFastaInput")},T.default.createElement(l.AccordionSummary,{className:o.accordionSummary,expandIcon:"panelFastaInput"===J?T.default.createElement(bd,{className:o.radioIcon,sx:{fontSize:"1.2rem",ml:5}}):T.default.createElement(_d,{className:o.radioIcon,sx:{fontSize:"1.2rem",mr:5}}),"aria-controls":"panelFastaInputd-content",id:"panelFastaInputd-header"},T.default.createElement(l.Typography,{component:"span"},"FASTA input")),T.default.createElement(l.AccordionDetails,{className:o.accordionDetails},T.default.createElement(l.FormGroup,null,T.default.createElement(l.FormControlLabel,{"data-testid":"files-on-url-checkbox",control:T.default.createElement(l.Checkbox,{onChange:()=>{v(y===Sf.EXTERNAL?Sf.BGZIP_FASTA:Sf.EXTERNAL),y===Sf.EXTERNAL&&x(!1)},checked:y===Sf.EXTERNAL,disabled:w&&y!==Sf.GFF3}),label:T.default.createElement(l.Box,{display:"flex",alignItems:"center"},"Use external URLs",T.default.createElement(l.Tooltip,{title:"Use external URLs to provide FASTA and index files. 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34:this.$=i[l]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=this,n=[0],r=[null],a=[],o=this.table,i="",s=0,l=0,c=a.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var u=this.lexer.yylloc;a.push(u);var d=this.lexer.options&&this.lexer.options.ranges;function f(){var e;return"number"!=typeof(e=t.lexer.lex()||1)&&(e=t.symbols_[e]||e),e}this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var p,h,m,g,y,v,b,_={};;){if(this.defaultActions[h=n[n.length-1]]?m=this.defaultActions[h]:(null==p&&(p=f()),m=o[h]&&o[h][p]),void 0===m||!m.length||!m[0]){var w;for(y in b=[],o[h])this.terminals_[y]&&y>2&&b.push("'"+this.terminals_[y]+"'");w=this.lexer.showPosition?"Parse error on line "+(s+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+b.join(", ")+", got '"+(this.terminals_[p]||p)+"'":"Parse error on line "+(s+1)+": Unexpected "+(1==p?"end of input":"'"+(this.terminals_[p]||p)+"'"),this.parseError(w,{text:this.lexer.match,token:this.terminals_[p]||p,line:this.lexer.yylineno,loc:u,expected:b})}if(m[0]instanceof Array&&m.length>1)throw new Error("Parse Error: multiple actions possible at state: "+h+", token: "+p);switch(m[0]){case 1:n.push(p),r.push(this.lexer.yytext),a.push(this.lexer.yylloc),n.push(m[1]),p=null,l=this.lexer.yyleng,i=this.lexer.yytext,s=this.lexer.yylineno,u=this.lexer.yylloc;break;case 2:if(_.$=r[r.length-(v=this.productions_[m[1]][1])],_._$={first_line:a[a.length-(v||1)].first_line,last_line:a[a.length-1].last_line,first_column:a[a.length-(v||1)].first_column,last_column:a[a.length-1].last_column},d&&(_._$.range=[a[a.length-(v||1)].range[0],a[a.length-1].range[1]]),void 0!==(g=this.performAction.apply(_,[i,l,s,this.yy,m[1],r,a].concat(c))))return g;v&&(n=n.slice(0,-1*v*2),r=r.slice(0,-1*v),a=a.slice(0,-1*v)),n.push(this.productions_[m[1]][0]),r.push(_.$),a.push(_._$),n.push(o[n[n.length-2]][n[n.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var a=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[a[0],a[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,a;if(this.options.backtrack_lexer&&(a={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(a.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var o in a)this[o]=a[o];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var a=this._currentRules(),o=0;o<a.length;o++)if((n=this._input.match(this.rules[a[o]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=o,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,a[o])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,a[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=a,n.Parser=a.Parser,n.parse=function(){return a.parse.apply(a,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var a=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(a)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),a=e("fs"),o={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};a.readFileSync&&(o.moduleInclude=a.readFileSync(e.resolve("../include/module.js")),o.actionInclude=a.readFileSync(e.resolve("../include/action.js"))),t.exports=o},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),a=e("./slice"),o=e("static-eval"),i=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function l(t,n,a){var o=e("./index"),i=p(r.parse(n).body[0].expression,{"@":t.value}),s=a.replace(/\{\{\s*value\s*\}\}/g,i),l=o.nodes(t.value,s);return l.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),l}function c(e){return Array.isArray(e)}function u(e){return function(t,n,r,a){var o=t.value,i=t.path,s=[],l=function(t,o){var i;c(t)?(t.forEach((function(e,t){s.length>=a||r(t,e,n)&&s.push({path:o.concat(t),value:e})})),t.forEach((function(t,n){s.length>=a||e&&l(t,o.concat(n))}))):(i=t)&&!(i instanceof Array)&&i instanceof 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0!==arguments[1]?arguments[1]:{}).blocked,n=indexedDB.deleteDatabase(e);return t&&n.addEventListener("blocked",(function(e){return t(e.oldVersion,e)})),qf(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,a=await this.db,o=n??a.transaction(["nodes","edges"]),i=o.objectStore("nodes"),s=[...await i.index("by-label").getAll(e),...await i.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",o);for(const t of e){const e=await i.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,a=await this.db,o=n??a.transaction(["nodes","edges"]),i=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},o)).filter((e=>NT(e)));if(r){const e=await this.recurseEdges("by-object",i.map((e=>e.id)),(e=>"subPropertyOf"===e.pred),"sub",o),t=o.objectStore("nodes");for(const n of e){const e=await t.get(n);e&&NT(e)&&i.push(e)}}return i}async recurseEdges(e,t,n,r,a){const o=new Set;return await async function t(i){await Promise.all([...i].map((async i=>{const s=(await a.objectStore("edges").index(e).getAll(i)).filter((e=>n(e))).map((e=>e[r]));if(s.length>0){for(const e of s)o.add(e);await t(s)}})))}(t),o.values()}async*expandNodeSet(e,t="is_a",n,r){const a=await this.db,o=r??a.transaction(["edges"]),i=[...e],s=await this.recurseEdges("subclasses"===n?"by-object":"by-subject",i,(e=>e.pred===t),"subclasses"===n?"sub":"obj",o);for(const e of i)yield e;for(const e of s)yield e}expandSubclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"subclasses",n)}expandSuperclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"superclasses",n)}async getClassesThat(e,t,n){const r=await this.db,a=n??r.transaction(["nodes","edges"]),o=await this.getPropertiesByLabel(e,{includeSubProperties:!0},a),i=new Set(o.map((e=>e.id))),s=await async function(e){const t=[];for await(const n of e)t.push(n);return t}(this.expandSuperclasses(t.map((e=>e.id)),"is_a",a)),l=await this.recurseEdges("by-object",s,(e=>i.has(e.pred)),"sub",a),c=this.expandSubclasses(l,"is_a",a),u=[];for await(const e of c){const t=await a.objectStore("nodes").get(e);t&&TT(t)&&!yT(t)&&u.push(t)}return u}async getClassesWithoutPropertyLabeled(e,t,n){const r=await this.db,a=n??r.transaction(["nodes","edges"]),o=a.objectStore("nodes"),i=a.objectStore("edges"),s=(await this.getPropertiesByLabel(e,t,a)).map((e=>e.id)),l=await(async()=>{const e=new Set;for(const t of s)for await(const n of i.index("by-predicate").iterate(t))e.add(n.value.sub);const t=new Set;for await(const n of this.expandSubclasses(e,"is_a",a))t.add(n);return t})(),c=[];for await(const e of o){const t=e.value;TT(t)&&!l.has(t.id)&&c.push(t.id)}const u=[];for(const e of c){const t=await a.objectStore("nodes").get(e);t&&TT(t)&&!yT(t)&&u.push(t)}return u}async getAllClasses(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").index("by-type").getAll("CLASS")).filter((e=>!yT(e)))}async getAllTerms(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").getAll()).filter((e=>!yT(e)))}}const kT=r.types.model("OntologyRecord",{name:r.types.string,version:"unversioned",source:r.types.union(m.LocalPathLocation,m.UriLocation,m.BlobLocation),options:r.types.frozen(),equivalentTypes:r.types.map(r.types.array(r.types.string))}).volatile((e=>({dataStore:void 0,startedEquivalentTypeRequests:new Set}))).actions((e=>({ping(){},initDataStore(){e.dataStore=new ET(e.name,e.version,r.getSnapshot(e.source),e.options)},afterCreate(){r.addDisposer(e,c.autorun((()=>{this.initDataStore()})))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).actions((e=>({loadEquivalentTypes:r.flow((function*(t){if(!e.dataStore)return;if(e.startedEquivalentTypeRequests.has(t))return;e.startedEquivalentTypeRequests.add(t);const n=(yield e.dataStore.getTermsWithLabelOrSynonym(t)).map((e=>e.lbl)).filter((e=>null!=e));r.isAlive(e)&&e.setEquivalentTypes(t,n)}))}))).actions((e=>({afterCreate(){c.autorun((t=>{e.dataStore&&(e.loadEquivalentTypes("gene"),e.loadEquivalentTypes("pseudogene"),e.loadEquivalentTypes("transcript"),e.loadEquivalentTypes("pseudogenic_transcript"),e.loadEquivalentTypes("CDS"),e.loadEquivalentTypes("mRNA"),t.dispose())}))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).views((e=>({isTypeOf(t,n){if(t===n)return!0;if(!e.dataStore)return!1;const r=e.equivalentTypes.get(n);return r?r.includes(t):(e.loadEquivalentTypes(n),!1)}}))),CT=r.types.model("OntologyManager",{ontologies:r.types.array(kT),prefixes:r.types.optional(r.types.map(r.types.string),{"GO:":"http://purl.obolibrary.org/obo/GO_","SO:":"http://purl.obolibrary.org/obo/SO_"})}).views((e=>({get featureTypeOntologyName(){const t=r.getRoot(e).jbrowse.configuration;return a.readConfObject(t.ApolloPlugin,"featureTypeOntologyName")}}))).views((e=>({get featureTypeOntology(){return this.findOntology(e.featureTypeOntologyName)},findOntology:(t,n)=>e.ontologies.find((e=>e.name===t&&(void 0===n||e.version===n))),openOntology(e,t){return this.findOntology(e,t)?.dataStore},applyPrefixes:t=>iT(t,e.prefixes),expandPrefixes:t=>function(e,t){for(const[n,r]of t.entries())if(e.startsWith(String(n)))return e.replace(String(n),r);return e}(t,e.prefixes)}))).actions((e=>({addOntology(t,n,r,a){const o=e.ontologies.push({name:t,version:n,source:r,options:{prefixes:new Map(e.prefixes.entries()),...a}});e.ontologies[o-1].ping()}}))),AT=[{displayName:"Label",jsonPath:"$.lbl"},{displayName:"Synonym",jsonPath:"$.meta.synonyms[*].val"},{displayName:"Definition",jsonPath:"$.meta.definition.val"}],OT=a.ConfigurationSchema("OntologyRecord",{name:{type:"string",description:'the full name of the ontology, e.g. "Gene Ontology"',defaultValue:"My Ontology"},version:{type:"string",description:"the ontology's version string",defaultValue:"unversioned"},source:{type:"fileLocation",description:"the download location for the ontology's source file",defaultValue:{locationType:"UriLocation",uri:"http://example.com/myontology.json"}},textIndexFields:{type:"frozen",description:"JSON paths for text fields that will be indexed for text searching",defaultValue:AT}});function TT(e){return"CLASS"===e.type}function NT(e){return"PROPERTY"===e.type}async function IT(e,t,n){if(!e)return;const r=await t.getTermsWithLabelOrSynonym(e.type,{includeSubclasses:!1}),a=r.filter(TT);if(0===r.length)return;const o=await t.getClassesThat("part_of",a);return 0!==o.length?o:void 0}function RT({fetchValidTerms:e,filterTerms:t,includeDeprecated:n,onChange:r,ontologyName:a,ontologyVersion:o,renderInput:i,session:s,style:c,value:d}){const[f,p]=u.useState(!1),[h,m]=u.useState(),[g,y]=u.useState(""),[v,b]=u.useState(),{ontologyManager:_}=s.apolloDataStore,w=_.findOntology(a,o)?.dataStore,x=w&&f&&!h,S=w&&!v,E=u.useCallback((e=>(n||!yT(e))&&(!t||t(e))),[t,n]);u.useEffect((()=>{const e=new AbortController,{signal:t}=e;return S&&async function(e,t,n,r){if(!t)return;const a=(await e.getTermsWithLabelOrSynonym(t,{includeSubclasses:!1})).find((e=>(n??(()=>!0))(e)));if(!a)throw new Error(`not a valid ${e.ontologyName} term`);return a}(w,d,E).then((e=>{y(""),t.aborted||b(e)}),(e=>{t.aborted||KO(e)||y(String(e))})),()=>{e.abort("OntologyTermAutocomplete matcher")}}),[s,d,E,w,S]),u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return x&&async function(e,t,n,r){let a;if(t){const n=await t(e,r);n&&(a=n)}return a||(a=await e.getAllTerms()),n?a.filter((e=>n(e))):a}(w,e,E,n).then((e=>{e&&!n.aborted&&m(e)}),(e=>{n.aborted||KO(e)||s.notify(e instanceof Error?e.message:String(e),"error")})),()=>{t.abort("OntologyTermAutocomplete loader")}}),[x,E,w,s,e]);const k={};return g&&(k.error=!0,k.helperText=g),T.default.createElement(l.Autocomplete,{style:c,autoComplete:!0,filterSelectedOptions:!0,disableClearable:!0,selectOnFocus:!0,clearOnBlur:!0,handleHomeEndKeys:!0,freeSolo:!0,value:d,options:h??[],onOpen:()=>{p(!0)},onClose:()=>{p(!1)},loading:x,renderInput:i??(e=>T.default.createElement(l.TextField,{...e,...k})),getOptionLabel:e=>"string"==typeof e?e:e.lbl??"",isOptionEqualToValue:(e,t)=>e.lbl===t.lbl,onChange:(e,t)=>{t&&("string"==typeof t?(b(void 0),r(d,t)):t.lbl!==d&&(y(""),b(t),r(d,t.lbl)))}})}function FT({changeManager:e,handleClose:t,session:n,sourceAssemblyId:r,sourceFeature:a}){const[o,i]=u.useState(String(a.max)),[s,c]=u.useState(String(a.min+1)),[d,f]=u.useState(""),[p,h]=u.useState(""),[m,g]=u.useState(""),y=Number(o)<=Number(s);return T.default.createElement(xf,{open:!0,title:"Add new child feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog"},T.default.createElement("form",{onSubmit:function(i){i.preventDefault(),h("");const l=(new Hn).toHexString(),c=new Xn.AddFeatureChange({changedIds:[a._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:l,refSeq:a.refSeq,min:Number(s)-1,max:Number(o),type:d},parentFeatureId:a._id});e.submit(c).then((()=>{n.apolloSetSelectedFeature(l)})),t(),i.preventDefault()}},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(l.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:s,onChange:e=>{c(e.target.value)}}),T.default.createElement(l.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:o,onChange:e=>{i(e.target.value)},error:y,helperText:y?'"End" must be greater than "Start"':null}),T.default.createElement(RT,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:d,filterTerms:TT,fetchValidTerms:async function(e,t,n){const r=await IT(e,t);if(r)return r;g(`Type "${e?.type}" does not have any children in the ontology`)}.bind(null,a),renderInput:e=>T.default.createElement(l.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0,error:Boolean(m),helperText:m}),onChange:(e,t)=>{var n;t&&(n=t,h(""),f(n))}})),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{variant:"contained",type:"submit",disabled:y||!(s&&o&&d)},"Submit"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),p?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},p)):null)}class PT{clientStore;constructor(e){this.clientStore=e}}class MT{dataStore;constructor(e){this.dataStore=e}recentChanges=[];undoneChanges=[];async submit(e,t={}){const{addToRecents:r=!0,submitToBackend:a=!0,updateJobsManager:o=!1}=t,i=n.getSession(this.dataStore),s=new AbortController,{jobsManager:l,isLocked:c,changeInProgress:u,setChangeInProgress:d}=n.getSession(this.dataStore);if(c)return i.notify("Cannot submit changes in locked mode"),void d(!1);if(u)return void i.notify("Could not submit change, there is another change still in progress");d(!0);const f={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort("ChangeManager")}};o&&l.runJob(f);const p=await Xn.validationRegistry.frontendPreValidate(e);if(!p.ok){const e=`Pre-validation failed: "${p.resultsMessages}"`;return o&&l.abortJob(f.name,e),i.notify(e,"error"),void d(!1)}try{await e.execute(this.dataStore)}catch(e){return o&&l.abortJob(f.name,String(e)),console.error(e),i.notify(`Error encountered in client: ${String(e)}. Data may be out of sync, please refresh the page`,"error"),void d(!1)}if((await Xn.validationRegistry.frontendPostValidate(e,this.dataStore)).ok||await this.undo(e),a){o&&l.update(f.name,"Submitting to driver");const{collaborationServerDriver:n,getBackendDriver:a}=this.dataStore,s=L.isAssemblySpecificChange(e)?a(e.assembly)??n:n;let c;try{c=await s.submitChange(e,t)}catch(t){return o&&l.abortJob(f.name,String(t)),console.error(t),i.notify(String(t),"error"),await this.undo(e,!1),void d(!1)}if(!c.ok){const t=`Post-validation failed: "${p.resultsMessages}"`;return o&&l.abortJob(f.name,t),i.notify(t,"error"),await this.undo(e,!1),void d(!1)}e.notification&&i.notify(e.notification,"success"),r&&(this.recentChanges.push(e),this.undoneChanges=[])}o&&l.done(f),d(!1)}async undo(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async redo(e,t=!0){return this.submit(e,{submitToBackend:t,addToRecents:!1})}async undoLastChange(){const e=n.getSession(this.dataStore),t=this.recentChanges.pop();if(t)return this.undoneChanges.push(t),this.undo(t);e.notify("No changes to undo!","info")}async redoLastChange(){const e=n.getSession(this.dataStore),t=this.undoneChanges.pop();if(t)return this.recentChanges.push(t),this.redo(t);e.notify("No changes to redo!","info")}}class DT extends PT{inFlight=new Map;refSeqMaps=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,a=new URL("features/searchFeatures",r),o=new URLSearchParams({assemblies:t.join(","),term:e});a.search=o.toString();const i=a.toString(),s=await this.fetch(n,i);if(!s.ok){const e=await bf(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:r,refName:a,start:o}=e,{assemblyManager:i}=n.getSession(this.clientStore);if(!i.get(t))throw new Error(`Could not find assembly with name "${t}"`);const s=(await this.getRefSeqMapping(t)).get(a);if(!s)throw new Error(`Could not find refSeq "${a}"`);const l=s.id,c=this.clientStore.getInternetAccount(t),{baseURL:u}=c,d=new URL("features/getFeatures",u),f=new URLSearchParams({refSeq:l,start:String(o),end:String(r)});d.search=f.toString();const p=d.toString(),h=await this.fetch(c,p);if(!h.ok){const e=await bf(h,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,a,c),h.json()}checkSocket(e,t,n){const{socket:r}=n,a=n.retrieveToken();if(!a)return;const o=Xn.makeUserSessionId(a),i=`${e}-${t}`,s=new MT(this.clientStore);r.hasListeners(i)||r.on(i,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId===o)return;const t=L.Change.fromJSON(e.changeInfo);L.isFeatureChange(t)&&this.haveDataForChange(t)&&await s.submit(t,{submitToBackend:!1})}))}haveDataForChange(e){const{assembly:t,changedIds:n}=e;if(!this.clientStore.assemblies.get(t))return!1;for(const e of n)if(this.clientStore.getFeature(e))return!0;return!1}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,r=this.inFlight.get(t),{assemblyName:a,end:o,refName:i,start:s}=e,{assemblyManager:l}=n.getSession(this.clientStore);if(!l.get(a))throw new Error(`Could not find assembly with name "${a}"`);const c=(await this.getRefSeqMapping(a)).get(i);if(!c)throw new Error(`Could not find refSeq "${i}"`);const u=c.id;if(r)return{seq:await r,refSeq:u};let d=this.clientStore.assemblies.get(a);d||(d=this.clientStore.addAssembly(a));let f=d.refSeqs.get(u);f||(f=d.addRefSeq(u,i));const p=f.getSequence(s,o);if(p.length===o-s)return{seq:p,refSeq:u};const h=this.clientStore.getInternetAccount(a),{baseURL:m}=h,g=new URL("sequence",m),y=new URLSearchParams({refSeq:u,start:String(s),end:String(o)});g.search=y.toString();const v=g.toString(),b=this.getSeqFromServer(h,v,f,s,o);this.inFlight.set(t,b);const _=await b;return this.checkSocket(a,i,h),this.inFlight.delete(t),{seq:_,refSeq:u}}async getSeqFromServer(e,t,n,r,a){const o=await this.fetch(e,t);if(!o.ok){let e;try{e=await o.text()}catch{e=""}throw new Error(`getSequence failed: ${o.status} (${o.statusText})${e?` (${e})`:""}`)}const i=await o.text();return n.addSequence({sequence:i,start:r,stop:a}),i}async getRefSeqMapping(e){const t=this.refSeqMaps.get(e);if(t)return t;const{assemblyManager:r}=n.getSession(this.clientStore);if(!r.get(e))throw new Error(`Could not find assembly with name "${e}"`);const a=this.clientStore.getInternetAccount(e),{baseURL:o}=a,i=new URL("refSeqs",o),s=new URLSearchParams({assembly:e});i.search=s.toString();const l=i.toString(),c=await this.fetch(a,l);if(!c.ok){let e;try{e=await c.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${c.status} (${c.statusText})${e?` (${e})`:""}`)}const u=await c.json(),d=new Map(u.map((e=>[e.name,{refName:e.name,id:e._id,aliases:e.aliases}])));return this.refSeqMaps.set(e,d),d}async getRefNameAliases(e){return[...(await this.getRefSeqMapping(e)).values()].map((e=>({refName:e.refName,aliases:[...new Set([e.id,...e.aliases])],uniqueId:`alias-${e.id}`})))}async getRefSeqId(e,t){const n=await this.getRefSeqMapping(e);if(!n)return;const r=n.get(t);return r?.id}async getRegions(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:a}=r,o=new URL("refSeqs",a),i=new URLSearchParams({assembly:e});o.search=i.toString();const s=o.toString(),l=await this.fetch(r,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRegions failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=n.getSession(this.clientStore);return t.assemblies.filter((t=>{const n=a.getConf(t,["sequence","metadata"]);return!(!(n&&n.apollo&&n.internetAccountConfigId)||e&&n.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:a}=r,o=new URL("changes",a).href,i=await this.fetch(r,o,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!i.ok){const e=await bf(i,"submitChange failed");throw new Error(e)}const s=new Xn.ValidationResultSet;return i.ok||(s.ok=!1),s}}class jT extends PT{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:a}=e,o=this.clientStore.assemblies.get(t);if(!o)return{seq:"",refSeq:r};const i=o.refSeqs.get(r);return i?{seq:i.getSequence(a,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=a.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await Wd(e);n.addCheckResults(t)}return new Xn.ValidationResultSet}async searchFeatures(e,t){return[]}}class LT extends PT{async loadAssembly(e){const{assemblyManager:t}=n.getSession(this.clientStore),r=t.get(e);if(!r)throw new Error(`Assembly ${e} not found`);const{file:o}=a.getConf(r,["sequence","metadata"]),i=require("node:fs");return Vd(e,await i.promises.readFile(o,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:a}=e,o=(await this.getAssembly(t)).refSeqs.get(r);if(!o)throw new Error(`refSeq ${r} not found in client data store`);return{seq:o.getSequence(a,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=a.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!L.isAssemblySpecificChange(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e.assembly);if(!o)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:i}=a.getConf(o,["sequence","metadata"]),s=this.clientStore.assemblies.get(e.assembly);if(!s)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const l=new Set(...s.refSeqs.keys()),{checkResults:c}=this.clientStore;for(const e of c.values())l.has(e.refSeq)&&c.delete(e._id);const u=await Wd(s);this.clientStore.addCheckResults(u);const d=[{directive:"gff-version",value:"3"}];for(const[,e]of s.refSeqs)d.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of s.comments)d.push({comment:e});for(const[,e]of s.refSeqs){const{features:t}=e;for(const[,e]of t)d.push(Xn.annotationFeatureToGFF3(r.getSnapshot(e)))}for(const[,e]of s.refSeqs){const[t]=e.sequence,n=Xn.splitStringIntoChunks(t.sequence,80).join("\n");d.push({id:e.name,description:e.description,sequence:n})}const f=wd.formatSync(d),p=require("node:fs");return await p.promises.writeFile(i,f,"utf8"),new Xn.ValidationResultSet}async searchFeatures(e,t){return[]}}var qT;function BT(e,t,n,r){const a={_id:(new Hn).toHexString(),refSeq:e,type:"CDS",min:n,max:r,strand:t},o={_id:(new Hn).toHexString(),refSeq:e,type:"exon",min:n,max:r,strand:t},i={};return i[a._id]=a,i[o._id]=o,{_id:(new Hn).toHexString(),refSeq:e,type:"mRNA",min:n,max:r,strand:t,children:i}}function UT({changeManager:e,handleClose:t,region:n,session:r}){const[a,o]=u.useState(String(n.end)),[i,s]=u.useState(String(n.start+1)),[c,d]=u.useState(qT.GENE_AND_SUBFEATURES),[f,p]=u.useState(""),[h,m]=u.useState(),[g,y]=u.useState(""),v=Number(a)<=Number(i);let b=Boolean(v)||!(i&&a&&c);return(c===qT.CUSTOM&&!f||!h&&c===qT.GENE_AND_SUBFEATURES||!h&&c===qT.TRANSCRIPT_AND_SUBFEATURES)&&(b=!0),T.default.createElement(xf,{open:!0,title:"Add new feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog"},T.default.createElement("form",{onSubmit:async function(o){o.preventDefault(),y("");const s=r.apolloDataStore.getBackendDriver(n.assemblyName);if(!s)return void y("No backend driver found");let l=n.refName;if(s instanceof DT){const e=await s.getRefSeqId(n.assemblyName,n.refName);if(!e)return void y(`Could not find refSeq for "${n.refName}"`);l=e}if(c===qT.GENE_AND_SUBFEATURES){const o=BT(l,h,Number(i)-1,Number(a)),s={};s[o._id]=o;const c=(new Hn).toHexString(),u=new Xn.AddFeatureChange({changedIds:[c],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:c,refSeq:l,min:Number(i)-1,max:Number(a),type:"gene",strand:h,children:s}});return e.submit(u).then((()=>{r.apolloSetSelectedFeature(c)})),void t()}if(c===qT.TRANSCRIPT_AND_SUBFEATURES){const o=BT(l,h,Number(i)-1,Number(a)),s=new Xn.AddFeatureChange({changedIds:[o._id],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:o});return e.submit(s).then((()=>{r.apolloSetSelectedFeature(o._id)})),void t()}if(!f)return void y("No type selected");const u=(new Hn).toHexString(),d=new Xn.AddFeatureChange({changedIds:[u],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:u,refSeq:l,min:Number(i)-1,max:Number(a),type:f,strand:h}});e.submit(d).then((()=>{r.apolloSetSelectedFeature(u)})),t()},"data-testid":"submit-form"},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(l.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:Number(i),onChange:e=>{s(e.target.value)}}),T.default.createElement(l.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{o(e.target.value)},error:v,helperText:v?'"End" must be greater than "Start"':null}),T.default.createElement(l.FormControl,null,T.default.createElement(l.InputLabel,{id:"demo-simple-select-label"},"Strand"),T.default.createElement(l.Select,{labelId:"demo-simple-select-label",id:"demo-simple-select",label:"Strand",value:h?.toString(),onChange:function(e){switch(y(""),Number(e.target.value)){case 1:m(1);break;case-1:m(-1);break;default:m(void 0)}}},T.default.createElement(l.MenuItem,{value:void 0}),T.default.createElement(l.MenuItem,{value:1},"+"),T.default.createElement(l.MenuItem,{value:-1},"-"))),T.default.createElement(l.FormControl,{style:{marginTop:20}},T.default.createElement(l.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:qT.GENE_AND_SUBFEATURES,name:"radio-buttons-group",value:c,onChange:e=>{y("");const{value:t}=e.target;Object.keys(qT).includes(t)&&d(qT[t])}},T.default.createElement(l.FormControlLabel,{value:qT.GENE_AND_SUBFEATURES,control:T.default.createElement(l.Radio,null),label:T.default.createElement(l.Box,{display:"flex",alignItems:"center"},"Add gene and sub-features",T.default.createElement(l.Tooltip,{title:"This is a shortcut to create a gene with a single mRNA, exon, and CDS"},T.default.createElement(l.IconButton,{size:"small"},T.default.createElement(yd,{sx:{fontSize:18}}))))}),T.default.createElement(l.FormControlLabel,{value:qT.TRANSCRIPT_AND_SUBFEATURES,control:T.default.createElement(l.Radio,null),label:T.default.createElement(l.Box,{display:"flex",alignItems:"center"},"Add transcript and sub-features",T.default.createElement(l.Tooltip,{title:"This is a shortcut to create a single mRNA with exon and CDS, but without a parent gene"},T.default.createElement(l.IconButton,{size:"small"},T.default.createElement(yd,{sx:{fontSize:18}}))))}),T.default.createElement(l.FormControlLabel,{value:qT.CUSTOM,checked:c!==qT.GENE_AND_SUBFEATURES&&c!==qT.TRANSCRIPT_AND_SUBFEATURES,control:T.default.createElement(l.Radio,null),label:"Add feature with a sequence ontology type"}))),c===qT.CUSTOM?T.default.createElement(RT,{session:r,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:TT,renderInput:e=>T.default.createElement(l.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0}),onChange:(e,t)=>{var n;t&&(n=t,y(""),p(n))}}):null),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{variant:"contained",type:"submit",disabled:b},"Submit"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),g?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},g)):null)}function zT(e,t){const n=(new Hn).toHexString();t.push(n);const r={};if(e.children)for(const n of Object.values(e.children)){const e=zT(n,t);r[e._id]=e}const a="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString();return{...e,refSeq:a,children:e.children&&r,_id:n}}function GT({changeManager:e,handleClose:t,session:n,sourceAssemblyId:o,sourceFeature:i}){const{assemblyManager:s}=n,c=s.assemblyList,[d,f]=u.useState(c.find((e=>e.name!==o))?.name),[p,h]=u.useState([]),[m,g]=u.useState(""),[y,v]=u.useState(i.min),[b,_]=u.useState("");function w(e,t){const n={};if(e.children)for(const r of Object.values(e.children)){const e=w(r,t);e.refSeq=m,e.min=e.min+t,e.max=e.max+t,n[e._id]=e}const r="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString(),a="string"==typeof e._id?e._id:e._id.toHexString();return{...e,refSeq:r,children:e.children&&n,_id:a}}return u.useEffect((()=>{(async function(){if(g(""),!d)return void _("No assemblies to copy to");const e=await s.waitForAssembly(d);if(!e)return;const{refNameAliases:t}=e;if(!t)return;const n=[...Object.entries(t)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t})));h(n),g(n[0]?._id||"")})().catch((e=>{_(String(e))}))}),[d,s]),T.default.createElement(xf,{open:!0,title:"Copy features and annotations",handleClose:t,maxWidth:!1,"data-testid":"copy-feature"},T.default.createElement("form",{onSubmit:async function(a){if(!d)return;a.preventDefault(),_("");const o=i.length,l=await s.waitForAssembly(d);if(!l)return void _(`Assembly not found: ${d}.`);const c=l.getCanonicalRefName(m),u=l.regions?.find((e=>e.refName===c));if(!u)return void _(`RefSeq not found: ${m}.`);const f=y+o;if(f>u.end)return void _(`Feature would extend beyond the bounds of the selected reference sequence. (Feature would end at ${f}, but reference sequence ends at ${u.end})`);if(y<u.start)return void _(`Reference sequence starts at ${u.start}, feature cannot start before that.`);const p=[],h=zT(r.getSnapshot(i),p),g={...h.attributes};"Parent"in g&&delete g.Parent,h.refSeq=m;const v=y-h.min;h.min=y,h.max=y+o;const b=w(h,v),x=new Xn.AddFeatureChange({changedIds:[h._id],typeName:"AddFeatureChange",assembly:d,addedFeature:{_id:h._id,refSeq:h.refSeq,min:h.min,max:h.max,type:h.type,children:b.children,attributes:g,strand:h.strand},copyFeature:!0,allIds:p});e.submit(x).then((()=>{n.apolloSetSelectedFeature(h._id)})),t(),a.preventDefault()}},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(l.DialogContentText,null,"Target assembly"),T.default.createElement(l.Select,{labelId:"label",value:d,onChange:function(e){f(e.target.value)}},c.filter((e=>e.name!==o)).map((e=>T.default.createElement(l.MenuItem,{key:e.name,value:e.name},a.readConfObject(e,"displayName"))))),T.default.createElement(l.DialogContentText,null,"Target reference sequence"),T.default.createElement(l.Select,{labelId:"label",value:m,onChange:function(e){g(e.target.value)}},p.map((e=>T.default.createElement(l.MenuItem,{key:e._id,value:e._id},e.name)))),T.default.createElement(l.DialogContentText,null,"Start position in target reference sequence"),T.default.createElement(l.TextField,{margin:"dense",type:"number",fullWidth:!0,variant:"outlined",value:y,onChange:e=>{v(Number(e.target.value))}})),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{disabled:!d||!m||!y,variant:"contained",type:"submit"},"Submit"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),b?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},b)):null)}function HT({changeManager:e,handleClose:t,session:n}){const{internetAccounts:a}=r.getRoot(n),[o,i]=u.useState(""),[s,c]=u.useState(!1),[d,f]=u.useState(!1),p=a.filter((e=>"ApolloInternetAccount"===e.type));if(0===p.length)throw new Error("No Apollo internet account found");const[h,m]=u.useState(p[0]),{collaborationServerDriver:g}=n.apolloDataStore,y=g.getAssemblies(),[v,b]=u.useState(y.at(0));return T.default.createElement(xf,{open:!0,title:"Delete Assembly",handleClose:t,maxWidth:!1,"data-testid":"delete-assembly"},T.default.createElement("form",{onSubmit:async function(n){if(n.preventDefault(),f(!0),i(""),!v)return void i("Must select assembly!");const r=new Xn.DeleteAssemblyChange({typeName:"DeleteAssemblyChange",assembly:v.name});await e.submit(r,{internetAccountId:h.internetAccountId}),t(),n.preventDefault()}},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},p.length>1?T.default.createElement(T.default.Fragment,null,T.default.createElement(l.DialogContentText,null,"Select account"),T.default.createElement(l.Select,{value:h.internetAccountId,onChange:function(e){f(!1);const t=p.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);m(t)},disabled:d&&!o},a.map((e=>T.default.createElement(l.MenuItem,{key:e.id,value:e.internetAccountId},e.name))))):null,T.default.createElement(l.DialogContentText,null,"Select assembly"),T.default.createElement(l.Select,{labelId:"label",value:v?.name??"",onChange:function(e){const t=y.find((t=>t.name===e.target.value));b(t)},disabled:0===y.length},y.map((e=>T.default.createElement(l.MenuItem,{key:e.name,value:e.name},e.displayName)))),T.default.createElement(l.DialogContentText,null,T.default.createElement("strong",{style:{color:"red"}},"NOTE: All assembly data will be deleted and this operation cannot be undone!")),T.default.createElement(l.FormGroup,null,T.default.createElement(l.FormControlLabel,{control:T.default.createElement(l.Checkbox,{checked:s,onChange:()=>{c(!s)}}),label:"I understand that all assembly data will be deleted"}))),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{disabled:!v||!s,variant:"contained",type:"submit"},"Delete"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),o?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},o)):null)}function $T({changeManager:e,handleClose:t,selectedFeature:n,session:a,setSelectedFeature:o,sourceAssemblyId:i,sourceFeature:s}){const[c,d]=u.useState(""),{ontologyManager:f}=a.apolloDataStore,{featureTypeOntology:p}=f;function h(e){if(!e.parent?.children||1===e.parent.children.size)return;const t=[];for(const n of e.parent.children.values())p?.isTypeOf(n.type,"CDS")||t.push(n);t.sort(((e,t)=>e.min-t.min));const n=[];for(const t of e.parent.children.values())p?.isTypeOf(t.type,"CDS")||n.push(t);if(n.sort(((e,t)=>t.max-e.max)),e.min===t[0].min){let n;for(const r of t)if(r._id!==e._id&&r.min>=e.min){n=r.min;break}if(n&&n!=e.parent.min)return{typeName:"LocationStartChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.min,newLocation:n}}if(e.max===n[0].max){let t;for(const r of n)if(r._id!=e._id&&r.max<=e.max){t=r.max;break}if(t&&t!=e.parent.max)return{typeName:"LocationEndChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.max,newLocation:t}}}return T.default.createElement(xf,{open:!0,title:"Delete feature",handleClose:t,maxWidth:!1,"data-testid":"delete-feature"},T.default.createElement("form",{onSubmit:a=>{!async function(a){a.preventDefault(),d(""),n?._id===s._id&&o();const l=[],c=new Xn.DeleteFeatureChange({changedIds:[s._id],typeName:"DeleteFeatureChange",assembly:i,changes:[{deletedFeature:r.getSnapshot(s),parentFeatureId:s.parent?._id}]});if(p&&(p.isTypeOf(s.type,"transcript")||p.isTypeOf(s.type,"pseudogenic_transcript"))){const e=h(s);e&&l.push(e)}if(p&&p.isTypeOf(s.type,"exon")){const e=function(e){if(!p)return;if(!p.isTypeOf(e.type,"exon"))return;if(!e.parent?.cdsLocations||0===e.parent.cdsLocations.length||0===e.parent.cdsLocations[0].length)return;if(!e.parent.children)throw new Error("Unable to find parent of CDS");if(1!=e.parent.cdsLocations.length)throw new Error("Unable to handle a transcript with multiple CDSs");const t=(e.parent.cdsLocations.at(0)??[]).sort((({min:e},{min:t})=>e-t));let n;for(const r of e.parent.children.values())if(r.type===t[0].type){n=r;break}if(!n)throw new Error("Unable to find CDS");const a=t[0].min,o=t[t.length-1].max;if(!(e.min>a&&e.max<o||e.max<a||e.min>o)){if(e.min<=a&&e.max>=o)return new Xn.DeleteFeatureChange({changedIds:[n._id],typeName:"DeleteFeatureChange",assembly:i,changes:[{deletedFeature:r.getSnapshot(n),parentFeatureId:n.parent?._id}]});if(e.min<=a&&e.max>a){let r;for(const n of t)if(n.min>e.max){r=n.min;break}if(!r)throw new Error("Error setting new CDS start");return{typeName:"LocationStartChange",changedId:n._id,featureId:n._id,oldLocation:n.min,newLocation:r}}if(e.min<o&&e.max>=o){let r;for(const n of t.reverse())if(n.max<e.min){r=n.max;break}if(!r)throw new Error("Error setting new CDS end");return{typeName:"LocationEndChange",changedId:n._id,featureId:n._id,oldLocation:n.max,newLocation:r}}throw new Error("Unexpected relationship between exon and CDS")}}(s);e&&("DeleteFeatureChange"===e.typeName?(c.changedIds.push(...e.changedIds),c.changes.push(...e.changes)):l.push(e));const t=h(s);if(t){l.push(t);const e=s.parent?.parent;if(e?.children)if("LocationStartChange"===t.typeName){let n=t.newLocation;for(const[,r]of e.children)r._id!=t.featureId&&r.min<n&&(n=r.min);n!=e.min&&l.push({typeName:t.typeName,changedId:e._id,featureId:e._id,oldLocation:e.min,newLocation:n})}else{let n=t.newLocation;for(const[,r]of e.children)r._id!=t.featureId&&r.max>n&&(n=r.max);n!=e.max&&l.push({typeName:t.typeName,changedId:e._id,featureId:e._id,oldLocation:e.max,newLocation:n})}}}const u=function(e,t){if(0===e.length)return;const n=new Xn.LocationStartChange({typeName:"LocationStartChange",changedIds:[],changes:[],assembly:t}),r=new Xn.LocationEndChange({typeName:"LocationEndChange",changedIds:[],changes:[],assembly:t});for(const t of e)"LocationStartChange"===t.typeName&&(n.changedIds.push(t.changedId),n.changes.push({featureId:t.featureId,oldStart:t.oldLocation,newStart:t.newLocation})),"LocationEndChange"===t.typeName&&(r.changedIds.push(t.changedId),r.changes.push({featureId:t.featureId,oldEnd:t.oldLocation,newEnd:t.newLocation}));if(n.changedIds.length>0&&0===r.changedIds.length)return n;if(r.changedIds.length>0&&0===n.changedIds.length)return r;throw new Error("Unexpected list of changes")}(l,i);await e.submit(c),u&&await e.submit(u),t(),a.preventDefault()}(a)}},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(l.DialogContentText,null,"Are you sure you want to delete the selected feature?")),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{variant:"contained",type:"submit"},"Yes"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),c?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},c)):null)}!function(e){e.GENE_AND_SUBFEATURES="GENE_AND_SUBFEATURES",e.TRANSCRIPT_AND_SUBFEATURES="TRANSCRIPT_AND_SUBFEATURES",e.CUSTOM="CUSTOM"}(qT||(qT={}));var VT={exports:{}};function WT({handleClose:e,session:t}){const[n,o]=u.useState(!1),[i,s]=u.useState(),[c,d]=u.useState(""),{collaborationServerDriver:f,getInternetAccount:p,inMemoryFileDriver:h}=t.apolloDataStore,m=[...f.getAssemblies(),...h.getAssemblies()];return T.default.createElement(xf,{open:!0,title:"Export GFF3",handleClose:e,maxWidth:!1,"data-testid":"download-gff3"},T.default.createElement("form",{onSubmit:async function(o){if(o.preventDefault(),d(""),!i)return void d("Must select assembly to download");const{internetAccountConfigId:s}=a.getConf(i,["sequence","metadata"]);s?await async function(e){if(!i)return void d("Must select assembly to download");const t=p(i.configuration.name,e),r=new URL("export/getID",t.baseURL),a=new URLSearchParams({assembly:i.name});r.search=a.toString();const o=r.toString(),s=t.getFetcher({locationType:"UriLocation",uri:o}),l=await s(o,{method:"GET"});if(!l.ok){const e=await bf(l,"Error when exporting ID");return void d(e)}const{exportID:c}=await l.json(),u=new URL("export",t.baseURL),f=new URLSearchParams({exportID:c,includeFASTA:n?"true":"false"});u.search=f.toString();const h=u.toString();window.open(h,"_blank")}(s):function(e){if(!i)return void d("Must select assembly to download");const{assemblies:t}=e.apolloDataStore,n=t.get(i.name),o=n?.refSeqs;if(!o)return void d(`No refSeqs found for assembly "${i.name}"`);const s=[{directive:"gff-version",value:"3"}],l=a.getConf(i,["sequence","adapter","features"]);for(const e of l){const{end:t,refName:n,start:r}=e;s.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of o){const{features:t}=e;if(t)for(const[,e]of t)s.push(Xn.annotationFeatureToGFF3(r.getSnapshot(e)))}for(const e of l){const{refName:t,seq:n}=e;s.push({id:t,description:"",sequence:n})}const c=wd.formatSync(s),u=new Blob([c],{type:"text/plain;charset=utf-8"});VT.exports.saveAs(u,`${i.displayName??i.name}.gff3`)}(t),e()}},T.default.createElement(l.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(l.DialogContentText,null,"Select assembly"),T.default.createElement(l.Select,{labelId:"label",value:i?.name??"",onChange:function(e){const t=m.find((t=>t.name===e.target.value));s(t)},disabled:0===m.length},m.map((e=>T.default.createElement(l.MenuItem,{key:e.name,value:e.name},e.displayName??e.name)))),T.default.createElement(l.DialogContentText,null,"Select assembly to export to GFF3"),T.default.createElement(l.FormGroup,null,T.default.createElement(l.FormControlLabel,{"data-testid":"include-fasta-checkbox",control:T.default.createElement(l.Checkbox,{checked:n,onChange:()=>{o(!n)}}),label:"Include fasta sequence in GFF output"}))),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{disabled:!i,variant:"contained",type:"submit"},"Download"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:e},"Cancel"))),c?T.default.createElement(l.DialogContent,null,T.default.createElement(l.DialogContentText,{color:"error"},c)):null)}function 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Please, refresh you browser to get last updates from server");const{baseURL:a,lastChangeSequenceNumber:o}=e,i=new URL("changes",a),s=new URLSearchParams({since:String(o),sort:"1"});i.search=s.toString();const l=i.toString(),c=e.getFetcher({locationType:"UriLocation",uri:l});let u;try{u=yield c(l,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!u.ok)return void console.error(`Error when fetching the last updates to recover socket connection — ${u.status}`);const d=yield u.json();for(const e of d){const t=L.Change.fromJSON(e);n.submit(t,{submitToBackend:!1})}}))}))).volatile((e=>{const{origin:t,pathname:n}=new URL("socket.io/",e.baseURL);return{socket:dd(t,{path:n})}})).actions((e=>({addSocketListeners(){const{session:t}=r.getRoot(e),{notify:n}=t,a=e.retrieveToken();if(!a)throw new Error("No Token found");const o=Xn.getDecodedToken(a),i=Xn.makeUserSessionId(o),{socket:s}=e,{addCheckResult:l,changeManager:c,deleteCheckResult:u}=t.apolloDataStore;s.on("connect",(()=>{e.getMissingChanges()})),s.on("connect_error",(e=>{console.error(e),n("Could not connect to the Apollo server.","error")})),s.on("COMMON",(e=>{if("checkResult"in e)return void(e.deleted?u(e.checkResult._id.toString()):l(e.checkResult));if(sessionStorage.setItem("LastChangeSequence",String(e.changeSequence)),e.userSessionId===i)return;const t=L.Change.fromJSON(e.changeInfo);c.submit(t,{submitToBackend:!1})})),s.on("USER_LOCATION",(e=>{const{channel:n,locations:r,userName:a,userSessionId:o}=e;"USER_LOCATION"===n&&o!==i&&t.addOrUpdateCollaborator({name:a,id:o,locations:r})})),s.on("REQUEST_INFORMATION",(e=>{const{channel:n,userSessionId:r}=e;"REQUEST_INFORMATION"===n&&r!==a&&t.broadcastLocations()}))}}))).actions((e=>({postUserLocation:(t=>{let n;return t=>{clearTimeout(n),n=setTimeout((()=>{!async function(t){if(!r.isAlive(e)||"none"===e.role)return;const{baseURL:n,controller:a}=e,o=new URL("users/userLocation",n).href,i=new URLSearchParams(JSON.stringify(t)),s=e.getFetcher({locationType:"UriLocation",uri:o});try{if(!(await s(o,{method:"POST",body:i,signal:a.signal})).ok)throw new Error("ignore")}catch{console.error("Broadcasting user location failed")}}(t)}),300)}})()}))).volatile((()=>({roleNotificationSent:!1}))).actions((e=>{function t(){e.postUserLocation([])}function a(){if("hidden"===document.visibilityState&&e.postUserLocation([]),"visible"===document.visibilityState){const{session:t}=r.getRoot(e);t.broadcastLocations()}}return{initialize:r.flow((function*(o){if("none"===o){if(!e.roleNotificationSent){const{session:t}=r.getRoot(e);t.notify("You have registered as an Apollo user but have not been given access. Ask your administrator to enable access for your account.","warning"),e.roleNotificationSent=!0}return}if("admin"===o){const t=r.getRoot(e);n.isAbstractMenuManager(t)&&function(e){e.appendToMenu("Apollo",{label:"Admin",type:"subMenu",icon:fd,subMenu:[{label:"Add Assembly",icon:Uc,onClick:e=>{e.queueDialog((t=>[Cf,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Delete Assembly",icon:pd,onClick:e=>{e.queueDialog((t=>[HT,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Import Features",icon:hd,onClick:e=>{e.queueDialog((t=>[JT,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add reference sequence aliases",onClick:e=>{e.queueDialog((t=>[lN,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add Assembly aliases",onClick:e=>{e.queueDialog((t=>[Of,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Users",icon:md,onClick:e=>{e.queueDialog((t=>[ZT,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Checks",icon:gd,onClick:e=>{e.queueDialog((t=>[KT,{session:e,handleClose:()=>{t()}}]))}}]})}(t)}yield e.updateLastChangeSequenceNumber(),e.addSocketListeners();const{baseURL:i}=e,s=new URL("users/locations",i).href,l=e.getFetcher({locationType:"UriLocation",uri:s});yield l(s,{method:"GET",signal:e.controller.signal}),window.addEventListener("beforeunload",t),document.addEventListener("visibilitychange",a)})),removeBeforeUnloadListener(){window.removeEventListener("beforeunload",t)},removeVisibilityChangeListener(){document.removeEventListener("visibilitychange",a)}}})).actions((e=>({afterAttach(){e.setRole(),c.autorun((async t=>{if(wN)return;const{session:n}=r.getRoot(e);if(n&&e.role)try{await e.initialize(e.role),t.dispose()}catch{}}),{name:"ApolloInternetAccount"})},beforeDestroy(){e.removeBeforeUnloadListener(),e.removeVisibilityChangeListener(),e.controller.abort("internet account beforeDestroy"),e.socket.close()}}))),SN="undefined"==typeof sessionStorage;class EN extends w.BaseAdapter{refNameAliases;async getRefNameAliases(){const e=a.readConfObject(this.config,"assemblyId");if(!SN){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");return await n.getRefNameAliases(e)}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n(new Error("timeout"))}),2e4),a=nN(),o=e=>{const n=e.data;(function(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo&&"refNameAliases"in e})(n)&&n.messageId===a&&(clearTimeout(r),removeEventListener("message",o),t(n.refNameAliases))};addEventListener("message",o),rpcServer.emit("apollo",{apollo:!0,method:"getRefNameAliases",assembly:e,messageId:a})}));return this.refNameAliases=t,t}freeResources(){}}var kN=a.ConfigurationSchema("ApolloRefNameAliasAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0}),CN={};function AN(e){return"uniqueId"in e&&"object"!==W(e.data)}Object.defineProperty(CN,"__esModule",{value:!0}),CN.isFeature=function(e){return"object"===W(e)&&null!==e&&"function"==typeof e.get&&"function"==typeof e.id};var ON=function(){function e(t){var n,r=this;K(this,e),AN(t)?this.data=t:(this.data=t.data,this.parentHandle=t.parent);var a=AN(t)?t.uniqueId:t.id;if(null==a)throw new Error("SimpleFeature requires a unique `id` or `data.uniqueId` attribute");if(this.uniqueId=String(a),!(this.data.aliases||this.data.end-this.data.start>=0))throw new Error("invalid feature data, end less than start. end: ".concat(this.data.end," start: ").concat(this.data.start));this.data.subfeatures&&(this.subfeatures=null===(n=this.data.subfeatures)||void 0===n?void 0:n.map((function(t,n){return"function"!=typeof t.get?new e({id:t.uniqueId||"".concat(a,"-").concat(n),data:$({strand:r.data.strand},t),parent:r}):t})))}return X(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=$($({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e($({},t))}}]),e}(),TN=CN.default=ON;function NN(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const IN="undefined"==typeof sessionStorage;class RN extends w.BaseSequenceAdapter{regions;async getRefNames(){return(await this.getRegions()).map((e=>e.refName))}async getRegions(){if(this.regions)return this.regions;const e=a.readConfObject(this.config,"assemblyId");if(!IN){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");const r=await n.getRegions(e);return this.regions=r,r}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n("timeout")}),2e4),a=nN(),o=e=>{const{data:n}=e;NN(n)&&n.messageId===a&&(clearTimeout(r),removeEventListener("message",o),t(n.regions))};addEventListener("message",o),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:e,messageId:a})}));return this.regions=t,t}getFeatures(e){const{end:t,refName:n,start:r}=e,o=a.readConfObject(this.config,"assemblyId"),i={...e,assemblyName:o};return x.ObservableCreate((async e=>{if(!IN){const a=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!a)return void e.error("No Apollo data store found");const s=a.getBackendDriver(o);if(!s)return void e.error("No backend driver found");const l=(await s.getRegions(i.assemblyName)).find((e=>e.refName===i.refName));if(!l)return void e.error("Cannot get region");i.end>l.end&&(i.end=l.end);const{seq:c}=await s.getSequence(i);return e.next(new TN({id:`${n} ${r}-${t}`,data:{refName:n,start:r,end:t,seq:c}})),void e.complete()}const a=await new Promise(((e,t)=>{const n=setTimeout((()=>{t("timeout")}),2e4),r=nN(),a=t=>{const{data:o}=t;NN(o)&&o.messageId===r&&(clearTimeout(n),removeEventListener("message",a),e(o.sequence))};addEventListener("message",a),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getSequence",region:i,messageId:r})}));e.next(new TN({id:`${n} ${r}-${t}`,data:{refName:n,start:r,end:t,seq:a}})),e.complete()}))}freeResources(){}}var FN=a.ConfigurationSchema("ApolloSequenceAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0}),PN={};Object.defineProperty(PN,"__esModule",{value:!0}),PN.RefSequenceResult=void 0;var MN=function(){function e(t){K(this,e),this.label=t.label,this.locString=t.locString,this.renderingComponent=t.renderingComponent,this.displayString=t.displayString,this.matchedAttribute=t.matchedAttribute,this.matchedObject=t.matchedObject,this.textSearchAdapter=t.textSearchAdapter,this.relevance=t.relevance,this.trackId=t.trackId,this.score=t.score||1,this.results=t.results||[]}return X(e,[{key:"getLabel",value:function(){return this.label}},{key:"getDisplayString",value:function(){return this.displayString||this.label}},{key:"getRenderingComponent",value:function(){return this.renderingComponent}},{key:"getTrackId",value:function(){return this.trackId}},{key:"getScore",value:function(){return this.score}},{key:"updateScore",value:function(e){return this.score=e,this.score}},{key:"getId",value:function(){return"".concat(this.getLabel(),"-").concat(this.getLocation(),"-").concat(this.getTrackId())}},{key:"hasLocation",value:function(){return!!this.locString}},{key:"getLocation",value:function(){return this.locString}},{key:"getComboResults",value:function(){return this.results}}]),e}(),DN=PN.default=MN,jN=function(e){ee(n,e);var t=le(n);function n(e){var r,a;return K(this,n),(r=t.call(this,e)).refName=null!==(a=e.refName)&&void 0!==a?a:"",r}return X(n,[{key:"getLocation",value:function(){return this.refName}}]),n}(MN);PN.RefSequenceResult=jN;class LN extends 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T.default.createElement("form",{onSubmit:function(t){t.preventDefault(),e(f?c:a[i])}},T.default.createElement("div",{style:{display:"flex",flexDirection:"column",margin:8}},T.default.createElement(l.FormControl,{variant:"outlined"},T.default.createElement(l.InputLabel,{id:"attribute-key-select-label"},"Key"),T.default.createElement(l.Select,{labelId:"attribute-key-select-label",value:i,label:"Key",onChange:e=>{s(e.target.value)}},Object.keys(a).map((e=>T.default.createElement(l.MenuItem,{key:e,value:e},e))))),f?T.default.createElement(l.TextField,{label:"Attribute key",variant:"outlined",id:"attributeKey",onChange:e=>{d(e.target.value)}}):null),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{color:"primary",variant:"contained",type:"submit",disabled:f&&!c},"Add"),T.default.createElement(l.Button,{variant:"outlined",onClick:function(){e()}},"Cancel")))}));var JN=s.createSvgIcon(i.jsx("path",{d:"M19 3H5c-1.11 0-2 .9-2 2v14c0 1.1.89 2 2 2h14c1.1 0 2-.9 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r[e]=t,r}))}(t,e)},variant:"outlined",fullWidth:!0}),T.default.createElement(l.IconButton,{"aria-label":"delete",size:"medium",edge:"end",onClick:()=>{!function(e){a((t=>{const n=[...t];return n.splice(e,1),n}))}(t)}},T.default.createElement(pd,{fontSize:"inherit"}))))),T.default.createElement(l.IconButton,{"aria-label":"add",size:"medium",color:"secondary",edge:"start",onClick:function(){a((e=>{const t=[...e];return t.push(""),t}))}},T.default.createElement(JN,{fontSize:"inherit"})),T.default.createElement(l.DialogActions,null,T.default.createElement(l.Button,{color:"primary",variant:"contained",onClick:()=>{t(r.filter(Boolean))}},n?"Add":"Update"),T.default.createElement(l.Button,{variant:"outlined",type:"submit",onClick:()=>{t()}},"Cancel")))}));function ZN({values:e}){return T.default.createElement(T.default.Fragment,null,e?.map(((e,t)=>T.default.createElement(l.Typography,{key:`${t}.${e}`,variant:"body2",color:"textSecondary"},e))))}const XN=d.makeStyles()((e=>({list:{"li:nth-of-type(odd)":{backgroundColor:e.palette.action.focus},"li:nth-of-type(even)":{backgroundColor:e.palette.action.hover}}}))),QN=h.observer((function({assembly:e,editable:t,feature:a,session:o}){const{pluginManager:i}=n.getEnv(o),{classes:s}=XN(),[d,f]=u.useState(null),[p,h]=u.useState(null),[m,g]=u.useState(null),[y,v]=u.useState(!1),[b,_]=u.useState(),w=Boolean(d),{changeManager:x}=o.apolloDataStore,{notify:S}=o;function E(){f(null),h(null)}const{_id:k,attributes:C}=a,A=i.evaluateExtensionPoint("Apollo-AttributeEditorComponent",KN,{key:b});return T.default.createElement(T.default.Fragment,null,T.default.createElement(l.List,{className:s.list},c.entries(C).map((([n,s])=>{const c=i.evaluateExtensionPoint("Apollo-AttributeEditorComponent",KN,{key:n}),u=i.evaluateExtensionPoint("Apollo-AttributeViewerComponent",ZN,{key:n});return T.default.createElement(l.ListItem,{key:n,secondaryAction:t&&!m?T.default.createElement(l.IconButton,{edge:"end",onClick:e=>{!function(e,t){f(e.currentTarget),h(t)}(e,n)}},T.default.createElement(zN,null)):null},T.default.createElement(l.ListItemText,{disableTypography:!0,primary:T.default.createElement(HN,{attributeKey:n}),secondary:m===n?T.default.createElement(c,{session:o,attributeValues:s,setAttribute:t=>{g(null),t&&function(t,n){const o={...r.getSnapshot(C)},i=structuredClone(o);if(!(t in o))return void S(`"${t}" not found in feature attributes`,"error");if(o[t].toString()===n.toString())return;o[t]=n;const s=new Xn.FeatureAttributeChange({changedIds:[a._id],typeName:"FeatureAttributeChange",assembly:e,featureId:a._id,oldAttributes:i,newAttributes:o});x.submit(s)}(n,t)}}):T.default.createElement(u,{values:s})}))})),b?T.default.createElement(l.ListItem,null,T.default.createElement(l.ListItemText,{disableTypography:!0,primary:T.default.createElement(HN,{attributeKey:b}),secondary:T.default.createElement(A,{session:o,attributeValues:[],setAttribute:t=>{t&&function(t,n){const o={...r.getSnapshot(C)},i=structuredClone(o);if(t in o)return void S(`Feature already has attribute "${t}"`,"error");o[t]=n;const s=new Xn.FeatureAttributeChange({changedIds:[a._id],typeName:"FeatureAttributeChange",assembly:e,featureId:a._id,oldAttributes:i,newAttributes:o});x.submit(s)}(b,t),_(void 0)},isNew:!0})})):null),t?T.default.createElement(l.Button,{color:"primary",variant:"contained",disabled:y||Boolean(b),onClick:()=>{v(!0)}},"Add 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u=c.offsetPx-e.lgv.offsetPx,d=(r-l)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,d,100),t.fillStyle="black",t.fillText(n.name,u+1,11,d-2)}a++}}}}),{name:"LinearApolloDisplayRenderCollaborators"})),r.addDisposer(e,c.autorun((()=>{const{canvas:t,featureLayouts:r,featuresHeight:a,lgv:o}=e;if(!o.initialized||e.regionCannotBeRendered())return;const{displayedRegions:i,dynamicBlocks:s}=o,l=t?.getContext("2d");if(l){l.clearRect(0,0,s.totalWidthPx,a);for(const[t,a]of r.entries()){const r=i[t];for(const[o,i]of a.entries())for(const[a,s]of i){const i=e.getAnnotationFeatureById(s);a>0||!i||n.doesIntersect2(r.start,r.end,i.min,i.max)&&e.getGlyph(i).draw(l,i,o,e,t)}}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=vf(t,e.lgv),{bp:r,regionNumber:a,y:o}=n,i=Math.floor(o/e.apolloRowHeight),s=e.featureLayouts[a].get(i);if(!s)return 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i.named("LinearApolloReferenceSequenceDisplayRendering").volatile((()=>({seqTrackCanvas:null,seqTrackOverlayCanvas:null,theme:l.createTheme()}))).actions((e=>({setSeqTrackCanvas(t){e.seqTrackCanvas=t},setSeqTrackOverlayCanvas(t){e.seqTrackOverlayCanvas=t},setTheme(t){e.theme=t},afterAttach(){r.addDisposer(e,c.autorun((()=>{const{lgv:t,seqTrackCanvas:r,theme:a,highContrast:o,showStartCodons:i,showStopCodons:s,sequenceRowHeight:l,session:c}=e;if(!t.initialized||e.regionCannotBeRendered()||!r)return;if(3/t.bpPerPx<1)return;const{bpPerPx:u,offsetPx:d,dynamicBlocks:f}=t;!function(e,t,r,a,o,i,s,l,c,u){const d=e.getContext("2d");if(!d)return;d.clearRect(0,0,e.width,e.height);const{apolloDataStore:f}=u;for(const e of o.contentBlocks){const o=e.offsetPx-a;HP(d,r,t,i,o,e.widthPx,c,e.reversed);const u=f.assemblies.get(e.assemblyName),p=u?.getByRefName(e.refName),h=Math.floor(e.start),m=Math.ceil(e.end);let g=p?.getSequence(h,m);if(!g)return;g=g.toUpperCase(),e.reversed&&(g=n.revcom(g));const 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Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:a}=r.getRoot(e),i=r.getSnapshot(a);let s;s=Xn.filterJBrowseConfig(i),0===Object.keys(s).length&&(s=void 0);const l=s?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Xn.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:s,newJBrowseConfig:{...s,tracks:l}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:a}=e;a("Track removed","success")}e.deleteTrackConf(n),a.deleteTrackConf(n)},icon:qM}]}}}));return r.types.snapshotProcessor(s,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:a}=t,{checkResults:o}=a;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=a.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=r.getSnapshot(t))}return e}})}const zM="WorkerGlobalScope"in globalThis;for(const[e,t]of Object.entries(Xn.changes))L.changeRegistry.registerChange(e,t);const GM=new Xn.CDSCheck;L.checkRegistry.registerCheck(GM.name,GM);const HM=new Xn.TranscriptCheck;L.checkRegistry.registerCheck(HM.name,HM),Xn.validationRegistry.registerValidation(new Xn.CoreValidation),Xn.validationRegistry.registerValidation(new Xn.ParentChildValidation),e.default=class extends C.default{name="ApolloPlugin";version="0.3.10";configurationSchema=sM;install(e){!function(e){e.addAdapterType((()=>new P.default({name:"ApolloSequenceAdapter",configSchema:FN,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:RN})))}(e),function(e){e.addAdapterType((()=>new 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o[i++]=20971520,o[i++]=20971520,s.bits=1,0;for(v=1;v<b&&0===Q[v];v++);for(C<v&&(C=v),E=1,y=1;y<=rn;y++)if(E<<=1,(E-=Q[y])<0)return-1;if(E>0&&(e===sn||1!==b))return-1;for(N[1]=0,y=1;y<rn;y++)N[y+1]=N[y]+Q[y];for(_=0;_<r;_++)0!==t[n+_]&&(a[N[t[n+_]]++]=_);if(e===sn?(B=R=a,f=19):e===cn?(B=un,k-=257,R=dn,D-=257,f=256):(B=An,R=fn,f=-1),S=0,_=0,y=v,A=i,I=C,w=0,u=-1,d=(x=1<<C)-1,e===cn&&x>on||e===ln&&x>an)return 1;for(;;){h=y-w,a[_]<f?(g=0,p=a[_]):a[_]>f?(g=R[D+a[_]],p=B[k+a[_]]):(g=96,p=0),c=1<<y-w,v=l=1<<I;do{o[A+(S>>w)+(l-=c)]=h<<24|g<<16|p|0}while(0!==l);for(c=1<<y-1;S&c;)c>>=1;if(0!==c?(S&=c-1,S+=c):S=0,_++,0==--Q[y]){if(y===b)break;y=t[n+a[_]]}if(y>C&&(S&d)!==u){for(0===w&&(w=C),A+=v,E=1<<(I=y-w);I+w<b&&!((E-=Q[I+w])<=0);)I++,E<<=1;if(x+=1<<I,e===cn&&x>on||e===ln&&x>an)return 1;o[u=S&d]=C<<24|I<<16|A-i|0}}return 0!==S&&(o[A+S]=y-w<<24|64<<16|0),s.bits=C,0}var gn=1,pn=2,mn=-2,yn=12,_n=30;function vn(e){return(e>>>24&255)+(e>>>8&65280)+((65280&e)<<8)+((255&e)<<24)}function bn(){this.mode=0,this.last=!1,this.wrap=0,this.havedict=!1,this.flags=0,this.dmax=0,this.check=0,this.total=0,this.head=null,this.wbits=0,this.wsize=0,this.whave=0,this.wnext=0,this.window=null,this.hold=0,this.bits=0,this.length=0,this.offset=0,this.extra=0,this.lencode=null,this.distcode=null,this.lenbits=0,this.distbits=0,this.ncode=0,this.nlen=0,this.ndist=0,this.have=0,this.next=null,this.lens=Jt(320),this.work=Jt(288),this.lendyn=null,this.distdyn=null,this.sane=0,this.back=0,this.was=0}var Cn,In,wn=!0;function En(e){if(wn){var t;for(Cn=Ut(512),In=Ut(32),t=0;t<144;)e.lens[t++]=8;for(;t<256;)e.lens[t++]=9;for(;t<280;)e.lens[t++]=7;for(;t<288;)e.lens[t++]=8;for(hn(gn,e.lens,0,288,Cn,0,e.work,{bits:9}),t=0;t<32;)e.lens[t++]=5;hn(pn,e.lens,0,32,In,0,e.work,{bits:5}),wn=!1}e.lencode=Cn,e.lenbits=9,e.distcode=In,e.distbits=5}function xn(e,t,n,r){var o,i=e.state;return null===i.window&&(i.wsize=1<<i.wbits,i.wnext=0,i.whave=0,i.window=qt(i.wsize)),r>=i.wsize?(Lt(i.window,t,n-i.wsize,i.wsize,0),i.wnext=0,i.whave=i.wsize):((o=i.wsize-i.wnext)>r&&(o=r),Lt(i.window,t,n-r,o,i.wnext),(r-=o)?(Lt(i.window,t,n-r,r,0),i.wnext=r,i.whave=i.wsize):(i.wnext+=o,i.wnext===i.wsize&&(i.wnext=0),i.whave<i.wsize&&(i.whave+=o))),0}function Sn(e,t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x=0,S=qt(4),B=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return mn;(n=e.state).mode===yn&&(n.mode=13),a=e.next_out,o=e.output,i=e.next_in,r=e.input,l=n.hold,u=n.bits,d=s=e.avail_in,A=c=e.avail_out,I=0;e:for(;;)switch(n.mode){case 1:if(0===n.wrap){n.mode=13;break}for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(2&n.wrap&&35615===l){n.check=0,S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0),l=0,u=0,n.mode=2;break}if(n.flags=0,n.head&&(n.head.done=!1),!(1&n.wrap)||(((255&l)<<8)+(l>>8))%31){e.msg="incorrect header check",n.mode=_n;break}if(8!=(15&l)){e.msg="unknown compression method",n.mode=_n;break}if(u-=4,C=8+(15&(l>>>=4)),0===n.wbits)n.wbits=C;else if(C>n.wbits){e.msg="invalid window size",n.mode=_n;break}n.dmax=1<<C,e.adler=n.check=1,n.mode=512&l?10:yn,l=0,u=0;break;case 2:for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(n.flags=l,8!=(255&n.flags)){e.msg="unknown compression method",n.mode=_n;break}if(57344&n.flags){e.msg="unknown header flags set",n.mode=_n;break}n.head&&(n.head.text=l>>8&1),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0,n.mode=3;case 3:for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.head&&(n.head.time=l),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,S[2]=l>>>16&255,S[3]=l>>>24&255,n.check=Zt(n.check,S,4,0)),l=0,u=0,n.mode=4;case 4:for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.head&&(n.head.xflags=255&l,n.head.os=l>>8),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0,n.mode=5;case 5:if(1024&n.flags){for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.length=l,n.head&&(n.head.extra_len=l),512&n.flags&&(S[0]=255&l,S[1]=l>>>8&255,n.check=Zt(n.check,S,2,0)),l=0,u=0}else n.head&&(n.head.extra=null);n.mode=6;case 6:if(1024&n.flags&&((f=n.length)>s&&(f=s),f&&(n.head&&(C=n.head.extra_len-n.length,n.head.extra||(n.head.extra=new Array(n.head.extra_len)),Lt(n.head.extra,r,i,f,C)),512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,n.length-=f),n.length))break e;n.length=0,n.mode=7;case 7:if(2048&n.flags){if(0===s)break e;f=0;do{C=r[i+f++],n.head&&C&&n.length<65536&&(n.head.name+=String.fromCharCode(C))}while(C&&f<s);if(512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,C)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===s)break e;f=0;do{C=r[i+f++],n.head&&C&&n.length<65536&&(n.head.comment+=String.fromCharCode(C))}while(C&&f<s);if(512&n.flags&&(n.check=Zt(n.check,r,f,i)),s-=f,i+=f,C)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;u<16;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l!==(65535&n.check)){e.msg="header crc mismatch",n.mode=_n;break}l=0,u=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=yn;break;case 10:for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}e.adler=n.check=vn(l),l=0,u=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,2;e.adler=n.check=1,n.mode=yn;case yn:case 13:if(n.last){l>>>=7&u,u-=7&u,n.mode=27;break}for(;u<3;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}switch(n.last=1&l,u-=1,3&(l>>>=1)){case 0:n.mode=14;break;case 1:En(n),n.mode=20;break;case 2:n.mode=17;break;case 3:e.msg="invalid block type",n.mode=_n}l>>>=2,u-=2;break;case 14:for(l>>>=7&u,u-=7&u;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if((65535&l)!=(l>>>16^65535)){e.msg="invalid stored block lengths",n.mode=_n;break}n.length=65535&l,l=0,u=0,n.mode=15;case 15:n.mode=16;case 16:if(f=n.length){if(f>s&&(f=s),f>c&&(f=c),0===f)break e;Lt(o,r,i,f,a),s-=f,i+=f,c-=f,a+=f,n.length-=f;break}n.mode=yn;break;case 17:for(;u<14;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(n.nlen=257+(31&l),u-=5,n.ndist=1+(31&(l>>>=5)),u-=5,n.ncode=4+(15&(l>>>=5)),l>>>=4,u-=4,n.nlen>286||n.ndist>30){e.msg="too many length or distance symbols",n.mode=_n;break}n.have=0,n.mode=18;case 18:for(;n.have<n.ncode;){for(;u<3;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.lens[B[n.have++]]=7&l,l>>>=3,u-=3}for(;n.have<19;)n.lens[B[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,I=hn(0,n.lens,0,19,n.lencode,0,n.work,w={bits:n.lenbits}),n.lenbits=w.bits,I){e.msg="invalid code lengths set",n.mode=_n;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;m=(x=n.lencode[l&(1<<n.lenbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(y<16)l>>>=p,u-=p,n.lens[n.have++]=y;else{if(16===y){for(E=p+2;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l>>>=p,u-=p,0===n.have){e.msg="invalid bit length repeat",n.mode=_n;break}C=n.lens[n.have-1],f=3+(3&l),l>>>=2,u-=2}else if(17===y){for(E=p+3;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}u-=p,C=0,f=3+(7&(l>>>=p)),l>>>=3,u-=3}else{for(E=p+7;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}u-=p,C=0,f=11+(127&(l>>>=p)),l>>>=7,u-=7}if(n.have+f>n.nlen+n.ndist){e.msg="invalid bit length repeat",n.mode=_n;break}for(;f--;)n.lens[n.have++]=C}}if(n.mode===_n)break;if(0===n.lens[256]){e.msg="invalid code -- missing end-of-block",n.mode=_n;break}if(n.lenbits=9,I=hn(gn,n.lens,0,n.nlen,n.lencode,0,n.work,w={bits:n.lenbits}),n.lenbits=w.bits,I){e.msg="invalid literal/lengths set",n.mode=_n;break}if(n.distbits=6,n.distcode=n.distdyn,I=hn(pn,n.lens,n.nlen,n.ndist,n.distcode,0,n.work,w={bits:n.distbits}),n.distbits=w.bits,I){e.msg="invalid distances set",n.mode=_n;break}n.mode=20;case 20:n.mode=21;case 21:if(s>=6&&c>=258){e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,nn(e,A),a=e.next_out,o=e.output,c=e.avail_out,i=e.next_in,r=e.input,s=e.avail_in,l=n.hold,u=n.bits,n.mode===yn&&(n.back=-1);break}for(n.back=0;m=(x=n.lencode[l&(1<<n.lenbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(m&&0==(240&m)){for(_=p,v=m,b=y;m=(x=n.lencode[b+((l&(1<<_+v)-1)>>_)])>>>16&255,y=65535&x,!(_+(p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}l>>>=_,u-=_,n.back+=_}if(l>>>=p,u-=p,n.back+=p,n.length=y,0===m){n.mode=26;break}if(32&m){n.back=-1,n.mode=yn;break}if(64&m){e.msg="invalid literal/length code",n.mode=_n;break}n.extra=15&m,n.mode=22;case 22:if(n.extra){for(E=n.extra;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.length+=l&(1<<n.extra)-1,l>>>=n.extra,u-=n.extra,n.back+=n.extra}n.was=n.length,n.mode=23;case 23:for(;m=(x=n.distcode[l&(1<<n.distbits)-1])>>>16&255,y=65535&x,!((p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(0==(240&m)){for(_=p,v=m,b=y;m=(x=n.distcode[b+((l&(1<<_+v)-1)>>_)])>>>16&255,y=65535&x,!(_+(p=x>>>24)<=u);){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}l>>>=_,u-=_,n.back+=_}if(l>>>=p,u-=p,n.back+=p,64&m){e.msg="invalid distance code",n.mode=_n;break}n.offset=y,n.extra=15&m,n.mode=24;case 24:if(n.extra){for(E=n.extra;u<E;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}n.offset+=l&(1<<n.extra)-1,l>>>=n.extra,u-=n.extra,n.back+=n.extra}if(n.offset>n.dmax){e.msg="invalid distance too far back",n.mode=_n;break}n.mode=25;case 25:if(0===c)break e;if(n.offset>(f=A-c)){if((f=n.offset-f)>n.whave&&n.sane){e.msg="invalid distance too far back",n.mode=_n;break}h=f>n.wnext?n.wsize-(f-=n.wnext):n.wnext-f,f>n.length&&(f=n.length),g=n.window}else g=o,h=a-n.offset,f=n.length;f>c&&(f=c),c-=f,n.length-=f;do{o[a++]=g[h++]}while(--f);0===n.length&&(n.mode=21);break;case 26:if(0===c)break e;o[a++]=n.length,c--,n.mode=21;break;case 27:if(n.wrap){for(;u<32;){if(0===s)break e;s--,l|=r[i++]<<u,u+=8}if(e.total_out+=A-=c,n.total+=A,A&&(e.adler=n.check=n.flags?Zt(n.check,o,A,a-A):$t(n.check,o,A,a-A)),A=c,(n.flags?l:vn(l))!==n.check){e.msg="incorrect data check",n.mode=_n;break}l=0,u=0}n.mode=28;case 28:if(n.wrap&&n.flags){for(;u<32;){if(0===s)break e;s--,l+=r[i++]<<u,u+=8}if(l!==(4294967295&n.total)){e.msg="incorrect length check",n.mode=_n;break}l=0,u=0}n.mode=29;case 29:I=1;break e;case _n:I=-3;break e;case 31:return-4;default:return mn}return e.next_out=a,e.avail_out=c,e.next_in=i,e.avail_in=s,n.hold=l,n.bits=u,(n.wsize||A!==e.avail_out&&n.mode<_n&&(n.mode<27||4!==t))&&xn(e,e.output,e.next_out,A-e.avail_out),A-=e.avail_out,e.total_in+=d-=e.avail_in,e.total_out+=A,n.total+=A,n.wrap&&A&&(e.adler=n.check=n.flags?Zt(n.check,o,A,e.next_out-A):$t(n.check,o,A,e.next_out-A)),e.data_type=n.bits+(n.last?64:0)+(n.mode===yn?128:0)+(20===n.mode||15===n.mode?256:0),(0===d&&0===A||4===t)&&0===I&&(I=-5),I}function Bn(e,t){var n,r=t.length;return e&&e.state?0!==(n=e.state).wrap&&11!==n.mode?mn:11===n.mode&&$t(1,t,r,0)!==n.check?-3:xn(e,t,r,r)?(n.mode=31,-4):(n.havedict=1,0):mn}var kn={2:"need dictionary",1:"stream end",0:"","-1":"file error","-2":"stream error","-3":"data error","-4":"insufficient memory","-5":"buffer error","-6":"incompatible version"};function Qn(){this.input=null,this.next_in=0,this.avail_in=0,this.total_in=0,this.output=null,this.next_out=0,this.avail_out=0,this.total_out=0,this.msg="",this.state=null,this.data_type=2,this.adler=0}var Nn=Object.prototype.toString,Rn=function(){return D((function e(t){if(N(this,e),!(this instanceof e))return new e(t);this.options=function(e){for(var t=Array.prototype.slice.call(arguments,1);t.length;){var n=t.shift();if(n){if("object"!==X(n))throw new TypeError(n+"must be non-object");for(var r in n)Ft(n,r)&&(e[r]=n[r])}}return e}({chunkSize:16384,windowBits:0,to:""},t||{});var n=this.options;n.raw&&n.windowBits>=0&&n.windowBits<16&&(n.windowBits=-n.windowBits,0===n.windowBits&&(n.windowBits=-15)),!(n.windowBits>=0&&n.windowBits<16)||t&&t.windowBits||(n.windowBits+=32),n.windowBits>15&&n.windowBits<48&&0==(15&n.windowBits)&&(n.windowBits|=15),this.err=0,this.msg="",this.ended=!1,this.chunks=[],this.strm=new Qn,this.strm.avail_out=0;var r,o,i,a=function(e,t){var n,r;return e?(r=new bn,e.state=r,r.window=null,n=function(e,t){var n,r;return e&&e.state?(t<0?(n=0,t=-t):(n=1+(t>>4),t<48&&(t&=15)),t&&(t<8||t>15)?mn:(null!==(r=e.state).window&&r.wbits!==t&&(r.window=null),r.wrap=n,r.wbits=t,function(e){var t;return e&&e.state?((t=e.state).wsize=0,t.whave=0,t.wnext=0,function(e){var t;return 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To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=K(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(a=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=F(this.changes),e.p=1,n.s();case 2:if((r=n.n()).done){e.n=4;break}return i=(o=r.value).assemblyName,a=o.fileIds,e.n=3,"gzi"in a?this.executeOnServerIndexed(t,i,a):this.executeOnServerFasta(t,i,a.fa);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,n.e(e.v);case 6:return e.p=6,n.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return a.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(i=B(U().m((function e(t,n,r){var o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x,S,B,k,Q,N,R,D,F;return U().w((function(e){for(;;)switch(e.n){case 0:if(s=(a=ue.env.CHUNK_SIZE)&&Number(a),ue.env.FILE_UPLOAD_FOLDER){e.n=1;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 1:return c=r.fa,l=r.fai,u=r.gzi,d=t.assemblyModel,A=t.checkModel,f=t.fileModel,h=t.filesService,g=t.refSeqModel,p=t.user,e.n=2,f.findById(c);case 2:if(null==(m=e.v)?void 0:m.checksum){e.n=3;break}throw new Error("No checksum for file document ".concat(null==m?void 0:m.id));case 3:return e.n=4,f.findById(l);case 4:if(null==(y=e.v)?void 0:y.checksum){e.n=5;break}throw new Error("No checksum for file document ".concat(null==y?void 0:y.id));case 5:return e.n=6,f.findById(u);case 6:if(null==(_=e.v)?void 0:_.checksum){e.n=7;break}throw new Error("No checksum for file document ".concat(null==_?void 0:_.id));case 7:return v=h.getFileHandle(m),b=h.getFileHandle(y),C=h.getFileHandle(_),I=new xr({fasta:v,fai:b,gzi:C}),e.n=8,I.getSequenceSizes();case 8:return w=e.v,e.n=9,Promise.all([v.close(),b.close(),C.close()]);case 9:return e.n=10,d.findOne({name:n}).exec();case 10:if(!e.v){e.n=11;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 11:return e.n=12,A.find({isDefault:!0}).exec();case 12:return E=e.v.map((function(e){return e._id.toHexString()})),e.n=13,d.create([{_id:this.assembly,name:n,user:p,status:-1,fileIds:r,checks:E}]);case 13:x=K(e.v,1),S=x[0],null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'Added new assembly "'.concat(n,'", docId "').concat(S._id,'"')),D=H(w);case 14:if((F=D()).done){e.n=16;break}return B=F.value,e.n=15,g.create([q(q({name:B,assembly:S._id,length:w[B]},s?{chunkSize:s}:null),{},{user:p,status:-1})]);case 15:N=K(e.v,1),R=N[0],null===(k=(Q=this.logger).debug)||void 0===k||k.call(Q,'Added new refSeq "'.concat(B,'", docId "').concat(R._id,'"')),e.n=14;break;case 16:return e.a(2)}}),e,this)}))),function(e,t,n){return i.apply(this,arguments)})},{key:"executeOnServerFasta",value:(o=B(U().m((function e(t,n,r){var o,i,a,s,c,l,u,d,A,f,h,g,p,m;return U().w((function(e){for(;;)switch(e.n){case 0:return u=t.assemblyModel,d=t.checkModel,A=t.fileModel,f=t.user,e.n=1,A.findById(r).exec();case 1:if(h=e.v){e.n=2;break}throw new Error('File "'.concat(r,'" not found in Mongo'));case 2:return null===(o=(i=this.logger).debug)||void 0===o||o.call(i,'FileId "'.concat(r,'", checksum "').concat(h.checksum,'"')),e.n=3,u.findOne({name:n}).exec();case 3:if(!e.v){e.n=4;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 4:return e.n=5,d.find({default:!0}).exec();case 5:return g=e.v.map((function(e){return e._id.toHexString()})),e.n=6,u.create([{_id:this.assembly,name:n,user:f,status:-1,fileIds:{fa:r},checks:g}]);case 6:return p=K(e.v,1),m=p[0],null===(a=(s=this.logger).debug)||void 0===a||a.call(s,'Added new assembly "'.concat(n,'", docId "').concat(m._id,'"')),null===(c=(l=this.logger).debug)||void 0===c||c.call(l,'File type: "'.concat(h.type,'", assemblyId: "').concat(m._id,'"')),e.n=7,this.addRefSeqIntoDb(h,m._id.toString(),t);case 7:return e.a(2)}}),e,this)}))),function(e,t,n){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]);var n,r,o,i,a}(Et),kr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","DeleteFeatureChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Feature deleted successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.changes,i=this.logger,(a=ue.env.INDEXED_IDS)&&(s=a.split(",")),c=F(o),e.p=1,u=U().m((function e(){var t,o,a,c,u,A,f,h,g,p,m;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return a=(o=l.value).deletedFeature,c=o.parentFeatureId,e.n=1,n.findOne({allIds:a._id}).session(r).exec();case 1:if(u=e.v){e.n=2;break}throw A="*** ERROR: The following featureId was not found in database ='".concat(a._id,"'"),i.error(A),new Error(A);case 2:if(!u._id.equals(a._id)){e.n=5;break}if(!c){e.n=3;break}throw new Error('Feature "'.concat(a._id,'" is top-level, but received a parent feature ID'));case 3:return e.n=4,n.findByIdAndDelete(u._id);case 4:return null===(f=i.debug)||void 0===f||f.call(i,'Feature "'.concat(a._id,'" deleted from document "').concat(u._id,'". Whole document deleted.')),e.a(2,1);case 5:return(h=Qr(u,a._id,d)).push(a._id),u.allIds=u.allIds.filter((function(e){return!h.includes(e)})),g=d.getIndexedIds(u,s),u.indexedIds?g.length>0?u.indexedIds=g:delete u.indexedIds:g.length>0&&(u.indexedIds=g),u.markModified("children"),e.p=6,e.n=7,u.save();case 7:e.n=9;break;case 8:throw e.p=8,m=e.v,null===(p=i.debug)||void 0===p||p.call(i,"*** FAILED: ".concat(m)),m;case 9:null===(t=i.debug)||void 0===t||t.call(i,'Feature "'.concat(a._id,'" deleted from document "').concat(u._id,'"'));case 10:return e.a(2)}}),e,null,[[6,8]])})),c.s();case 2:if((l=c.n()).done){e.n=5;break}return e.d(Y(u()),3);case 3:if(!e.v){e.n=4;break}return e.a(3,4);case 4:e.n=2;break;case 5:e.n=7;break;case 6:e.p=6,c.e(e.v);case 7:return e.p=7,c.f(),e.f(7);case 8:return e.a(2)}}),e,this,[[1,6,7,8]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new 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e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Nr({changedIds:o,typeName:"AddFeatureChange",changes:i,assembly:t},{logger:r})}}]);var n,r,o}(pt);function Qr(e,t,n){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var r=e._id,o=e.children,i=o.get(t);if(i){var a=n.getChildFeatureIds(i);return o.delete(t),a}var s,c=F(o);try{for(c.s();!(s=c.n()).done;){var l=K(s.value,2)[1];try{return Qr(l,t,n)}catch(e){}}}catch(e){c.e(e)}finally{c.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(r))}var Nr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","AddFeatureChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Feature added successfully"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x,S,B,k,Q,N,R,D,T,j,M,O,L,P,J;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return o=t.assemblyModel,i=t.featureModel,a=t.refSeqModel,s=t.session,c=t.user,l=this.assembly,u=this.changes,d=this.logger,e.n=1,o.findById(l).session(s).exec();case 1:if(e.v){e.n=2;break}throw A='*** ERROR: Assembly with id "'.concat(l,'" not found'),d.error(A),new Error(A);case 2:f=0,null===(n=d.debug)||void 0===n||n.call(d,"changes: ".concat(JSON.stringify(u))),(h=ue.env.INDEXED_IDS)&&(g=h.split(",")),p=F(u),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=17;break}return _=m.value,null===(y=d.debug)||void 0===y||y.call(d,"change: ".concat(JSON.stringify(_))),b=_.allIds,C=_.copyFeature,I=_.parentFeatureId,w=(v=_.addedFeature)._id,E=v.refSeq,e.n=5,a.findById(E).session(s).exec();case 5:if(e.v){e.n=6;break}throw new Error('RefSeq was not found by assembly "'.concat(l,'" and seq_id "').concat(E,'" not found'));case 6:if(!C){e.n=8;break}return S=this.getIndexedIds(v,g),e.n=7,i.create([q(q({},v),{},{allIds:b,indexedIds:S,status:-1,user:c})],{session:s});case 7:B=K(e.v,1),k=B[0],null===(x=d.debug)||void 0===x||x.call(d,'Copied feature, docId "'.concat(k._id,'" to assembly "').concat(l,'"')),f++,e.n=15;break;case 8:if(Q=this.getIndexedIds(v,g),!I){e.n=13;break}return e.n=9,i.findOne({allIds:I}).session(s).exec();case 9:if(D=e.v){e.n=10;break}throw new Error('Could not find feature with ID "'.concat(I,'"'));case 10:if(T=this.getFeatureFromId(D,I)){e.n=11;break}throw new Error('Could not find feature with ID "'.concat(I,'" in feature "').concat(D._id,'"'));case 11:return this.addChild(T,v),j=this.getChildFeatureIds(v),(N=D.allIds).push.apply(N,[w].concat(V(j))),Q.length>0&&!D.indexedIds&&(D.indexedIds=[]),null===(R=D.indexedIds)||void 0===R||R.push.apply(R,V(Q)),e.n=12,D.save();case 12:e.n=15;break;case 13:return O=this.getChildFeatureIds(v),L=[w].concat(V(O)),e.n=14,i.create([q({allIds:L,indexedIds:Q,status:0},v)],{session:s});case 14:P=K(e.v,1),J=P[0],null===(M=d.verbose)||void 0===M||M.call(d,'Added docId "'.concat(J._id,'"'));case 15:f++;case 16:e.n=4;break;case 17:e.n=19;break;case 18:e.p=18,p.e(e.v);case 19:return e.p=19,p.f(),e.f(19);case 20:null===(r=d.debug)||void 0===r||r.call(d,"Added ".concat(f," new feature(s) into database."));case 21:return e.a(2)}}),e,this,[[3,18,19,20]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=this.assembly,r=F(this.changes),e.p=2,r.s();case 3:if((o=r.n()).done){e.n=8;break}if(a=(i=o.value).addedFeature,!(s=i.parentFeatureId)){e.n=6;break}if(c=t.getFeature(s)){e.n=5;break}return e.n=4,t.loadFeatures([{assemblyName:n,refName:a.refSeq,start:a.min,end:a.max}]);case 4:if(c=t.getFeature(s)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 5:c.attributes.get("_id")||c.setAttribute("_id",[c._id]),c.addChild(a),e.n=7;break;case 6:t.addFeature(n,a);case 7:e.n=3;break;case 8:e.n=10;break;case 9:e.p=9,r.e(e.v);case 10:return e.p=10,r.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[2,9,10,11]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new kr({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Rr=function(e){function t(e,n){var r,o;return N(this,t),T(o=Q(this,t,[e,n]),"typeName","AddFeaturesFromFileChange"),T(o,"changes",void 0),T(o,"deleteExistingFeatures",!1),o.deleteExistingFeatures=null!==(r=e.deleteExistingFeatures)&&void 0!==r&&r,o.changes="changes"in e?e.changes:[e],o}return O(t,e),D(t,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:K(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(r=t.fileModel,o=t.filesService,i=this.changes,a=this.logger,!this.deleteExistingFeatures){e.n=1;break}return e.n=1,this.removeExistingFeatures(t);case 1:s=F(i),e.p=2,l=U().m((function e(){var n,i,s,l,p,m,y,_,v,b,C,I,w,x,S,B,k;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(s=(i=c.value).fileId,l=i.parseOptions,ue.env.FILE_UPLOAD_FOLDER){e.n=1;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 1:return e.n=2,r.findById(s).exec();case 2:if(p=e.v){e.n=3;break}throw new Error('File "'.concat(s,'" not found in Mongo'));case 3:null===(n=a.debug)||void 0===n||n.call(a,'FileId "'.concat(s,'", checksum "').concat(p.checksum,'"')),m=0,y=function(e){m<=99&&(a.warn("Error parsing or adding feature"),a.warn(e),99===m&&a.warn("Reached 100 feature errors, omitting further warnings from log")),m++},b=void 0===(v=(_=null!=l?l:{}).bufferSize)?1e4:v,I=void 0===(C=_.strict)||C,w=o.parseGFF3(o.getFileStream(p),{bufferSize:b,errorCallback:I?void 0:y}),x=0,u=!1,d=!1,e.p=4,f=E(w);case 5:return e.n=6,f.next();case 6:if(!(u=!(h=e.v).done)){e.n=13;break}return S=h.value,e.p=7,e.n=8,g.addFeatureIntoDb(S,t);case 8:e.n=11;break;case 9:if(e.p=9,k=e.v,!I&&0!==x){e.n=10;break}throw k;case 10:y(k);case 11:++x%1e3==0&&(null===(B=a.debug)||void 0===B||B.call(a,"Processed ".concat(x," features")));case 12:u=!1,e.n=5;break;case 13:e.n=15;break;case 14:e.p=14,d=!0,A=e.v;case 15:if(e.p=15,e.p=16,!u||null==f.return){e.n=17;break}return e.n=17,f.return();case 17:if(e.p=17,!d){e.n=18;break}throw A;case 18:return e.f(17);case 19:return e.f(15);case 20:return e.a(2)}}),e,null,[[16,,17,19],[7,9],[4,14,15,20]])})),s.s();case 3:if((c=s.n()).done){e.n=5;break}return e.d(Y(l()),4);case 4:e.n=3;break;case 5:e.n=7;break;case 6:e.p=6,s.e(e.v);case 7:return e.p=7,s.f(),e.f(7);case 8:null===(n=a.debug)||void 0===n||n.call(a,"New features added into database!");case 9:return e.a(2)}}),e,this,[[2,6,7,8]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]);var n,r,o}(Et),Dr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","AddRefSeqAliasesChange"),T(r,"refSeqAliases",void 0),r.refSeqAliases=e.refSeqAliases,r}return O(t,e),D(t,[{key:"executeOnClient",value:function(e){var t,n=o.getSession(e).assemblyManager.get(this.assembly);if(!n)throw new Error("assembly ".concat(this.assembly," not found"));var r,i=null!==(t=n.refNameAliases)&&void 0!==t?t:{},a=F(this.refSeqAliases);try{for(a.s();!(r=a.n()).done;){var s,c=r.value,l=c.refName,u=F(c.aliases);try{for(u.s();!(s=u.n()).done;)i[s.value]=l}catch(e){u.e(e)}finally{u.f()}}}catch(e){a.e(e)}finally{a.f()}return n.setRefNameAliases(i),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,i=this.logger,a=F(this.refSeqAliases),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=4;break}return l=s.value,null===(c=i.debug)||void 0===c||c.call(i,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(l))),u=l.aliases,d=l.refName,e.n=3,n.updateOne({assembly:o,name:d},{$set:{aliases:u}}).session(r);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,a.e(e.v);case 6:return e.p=6,a.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return n.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]);var n}(ht),Fr=function(e){function t(){var e;N(this,t);for(var n=arguments.length,r=new Array(n),o=0;o<n;o++)r[o]=arguments[o];return T(e=Q(this,t,[].concat(r)),"typeName","DeleteAssemblyChange"),e}return O(t,e),D(t,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(i=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d;return U().w((function(e){for(;;)switch(e.n){case 0:return r=t.assemblyModel,o=t.featureModel,i=t.refSeqChunkModel,a=t.refSeqModel,s=t.session,c=this.assembly,l=this.logger,e.n=1,r.findById(c).session(s).exec();case 1:if(e.v){e.n=2;break}throw u='*** ERROR: Assembly with id "'.concat(c,'" not found'),l.error(u),new Error(u);case 2:return e.n=3,a.find({assembly:c}).exec();case 3:return d=e.v.map((function(e){return e._id})),e.n=4,i.deleteMany({refSeq:d}).exec();case 4:return e.n=5,o.deleteMany({refSeq:d}).exec();case 5:return e.n=6,a.deleteMany({assembly:c}).exec();case 6:return e.n=7,r.findByIdAndDelete(c).exec();case 7:null===(n=l.debug)||void 0===n||n.call(l,'Assembly "'.concat(c,'" deleted from database.'));case 8:return e.a(2)}}),e,this)}))),function(e){return i.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:if(i=this.assembly,t){e.n=1;break}throw new Error("No data store");case 1:return a=o.getSession(t),t.assemblies.has(i)&&t.deleteAssembly(i),e.n=2,null===(n=a.removeAssembly)||void 0===n?void 0:n.call(a,i);case 2:return e.n=3,null===(r=a.removeSessionAssembly)||void 0===r?void 0:r.call(a,i);case 3:return e.a(2)}}),e,this)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]);var n,r,i}(ht),Tr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","DeleteUserChange"),T(r,"changes",void 0),T(r,"userId",void 0),r.changes="changes"in e?e.changes:[e],r.userId=e.userId,r}return O(t,e),D(t,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:return n=t.session,r=t.userModel,o=this.logger,i=this.userId,e.n=1,r.findOneAndDelete({_id:i}).session(n).exec();case 1:if(e.v){e.n=2;break}throw a='*** ERROR: User with id "'.concat(i,'" not found'),o.error(a),new Error(a);case 2:return e.a(2)}}),e,this)}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)if(0===e.n)return e.a(2)}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){return new t({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]);var n,r,o}(ft),jr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","FeatureAttributeChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldAttributes:o.oldAttributes,newAttributes:o.newAttributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=F(o=this.changes),e.p=1,s.s();case 2:if((c=s.n()).done){e.n=7;break}return d=c.value.featureId,e.n=3,n.findOne({allIds:d}).session(r).exec();case 3:if(A=e.v){e.n=4;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),i.error(f),new Error(f);case 4:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Feature found: ".concat(JSON.stringify(A))),h=this.getFeatureFromId(A,d)){e.n=5;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 5:null===(u=i.debug)||void 0===u||u.call(i,"*** Found feature: ".concat(JSON.stringify(h))),a.push({feature:h,topLevelFeature:A});case 6:e.n=2;break;case 7:e.n=9;break;case 8:e.p=8,s.e(e.v);case 9:return e.p=9,s.f(),e.f(9);case 10:(g=ue.env.INDEXED_IDS)&&(p=g.split(",")),m=F(o.entries()),e.p=11,_=U().m((function e(){var t,n,r,o,s,c,l,u,d,A,f;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:return r=K(y.value,2),o=r[1].newAttributes,c=(s=a[r[0]]).feature,l=s.topLevelFeature,u=null===(t=p)||void 0===t?void 0:t.some((function(e){var t;return e in o||e in(null!==(t=null==c?void 0:c.attributes)&&void 0!==t?t:{})})),c.attributes=o,u&&(d=v.getIndexedIds(l,p),l.indexedIds=d,l.markModified("indexedIds")),l._id.equals(c._id)?l.markModified("attributes"):l.markModified("children"),e.p=1,e.n=2,l.save();case 2:e.n=4;break;case 3:throw e.p=3,f=e.v,null===(A=i.debug)||void 0===A||A.call(i,"*** FAILED: ".concat(f)),f;case 4:null===(n=i.debug)||void 0===n||n.call(i,"*** Feature attributes modified (added, edited or deleted), docId: ".concat(JSON.stringify(l)));case 5:return e.a(2)}}),e,null,[[1,3]])})),m.s();case 12:if((y=m.n()).done){e.n=14;break}return e.d(Y(_()),13);case 13:e.n=12;break;case 14:e.n=16;break;case 15:e.p=15,m.e(e.v);case 16:return e.p=16,m.f(),e.f(16);case 17:return e.a(2)}}),e,this,[[11,15,16,17],[1,8,9,10]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("applyToLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(o=K(r.value,2),i=o[0],s=t.getFeature(a=o[1])){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 4:s.setAttributes(new Map(Object.entries(this.changes[i].newAttributes)));case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger;return new t({changedIds:V(this.changedIds).reverse(),typeName:"FeatureAttributeChange",changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldAttributes:e.newAttributes,newAttributes:e.oldAttributes}})),assembly:e},{logger:r})}}]);var n,r,o}(pt),Mr=["__v","_id","assemblies","configuration","internetAccounts","plugins","tracks"],Or=["hasRole"];function Lr(e){var t,n=e.assemblies,r=e.configuration,o=e.internetAccounts,i=e.plugins,a=e.tracks,s=J(e,Mr);if(n&&(s.assemblies=n.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type}))),null!=r&&null!==(t=r.ApolloPlugin)&&void 0!==t&&t.hasRole){var c=J(r.ApolloPlugin,Or);s.configuration=q(q({},r),{},{ApolloPlugin:c})}return o&&(s.internetAccounts=o.filter((function(e){return"ApolloInternetAccount"!==e.type}))),i&&(s.plugins=i.filter((function(e){return"Apollo"!==e.name}))),a&&(s.tracks=a.filter((function(e){return"ApolloTrack"!==e.type}))),s}var Pr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","ImportJBrowseConfigChange"),T(r,"oldJBrowseConfig",void 0),T(r,"newJBrowseConfig",void 0),r.oldJBrowseConfig=e.oldJBrowseConfig,r.newJBrowseConfig=e.newJBrowseConfig,r}return O(t,e),D(t,[{key:"toJSON",value:function(){return{typeName:this.typeName,oldJBrowseConfig:this.oldJBrowseConfig,newJBrowseConfig:this.newJBrowseConfig}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a;return U().w((function(e){for(;;)switch(e.n){case 0:return r=t.jbrowseConfigModel,o=this.logger,i=this.newJBrowseConfig,e.n=1,r.deleteMany();case 1:if(i){e.n=2;break}return e.a(2);case 2:return a=Lr(i),e.n=3,r.create(a);case 3:null===(n=o.debug)||void 0===n||n.call(o,"Stored new JBrowse Config");case 4:return e.a(2)}}),e,this)}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new 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o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],a=F(this.changes),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=16;break}d=(u=s.value).featureId,A=u.oldEnd,f=u.newEnd,h=void 0,g=void 0,p=F(i),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=6;break}if(!(_=this.getFeatureFromId(y=m.value,d))){e.n=5;break}return h=y,g=_,e.a(3,6);case 5:e.n=4;break;case 6:e.n=8;break;case 7:e.p=7,p.e(e.v);case 8:return e.p=8,p.f(),e.f(8);case 9:if(h){e.n=11;break}return e.n=10,n.findOne({allIds:d}).session(r).exec();case 10:(h=e.v)&&i.push(h);case 11:if(h){e.n=12;break}throw v="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),o.error(v),new Error(v);case 12:if(null===(c=o.debug)||void 0===c||c.call(o,"*** TOP level feature found: ".concat(JSON.stringify(h))),g||(g=this.getFeatureFromId(h,d)),g){e.n=13;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 13:if(null===(l=o.debug)||void 0===l||l.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.max===A){e.n=14;break}throw o.error("Expected previous max does not match"),new Error("Expected previous max does not match");case 14:g.max=f,h._id.equals(g._id)?h.markModified("end"):h.markModified("children");case 15:e.n=2;break;case 16:e.n=18;break;case 17:e.p=17,a.e(e.v);case 18:return e.p=18,a.f(),e.f(18);case 19:b=0,C=i;case 20:if(!(b<C.length)){e.n=25;break}return I=C[b],e.p=21,e.n=22,I.save();case 22:e.n=24;break;case 23:throw e.p=23,E=e.v,null===(w=o.debug)||void 0===w||w.call(o,"*** FAILED: ".concat(E)),E;case 24:b++,e.n=20;break;case 25:return e.a(2)}}),e,this,[[21,23],[3,7,8,9],[1,17,18,19]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(a=(o=r.value).newEnd,s=t.getFeature(i=o.featureId)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 4:s.setMax(a);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:V(this.changedIds).reverse(),typeName:o,changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldEnd:e.newEnd,newEnd:e.oldEnd}})),assembly:e},{logger:r})}}]);var n,r,o}(pt);function Jr(e){return"LocationEndChange"===e.typeName}var Ur=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","LocationStartChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStart:o.oldStart,newStart:o.newStart}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=[],a=F(this.changes),e.p=1,a.s();case 2:if((s=a.n()).done){e.n=16;break}d=(u=s.value).featureId,A=u.oldStart,f=u.newStart,h=void 0,g=void 0,p=F(i),e.p=3,p.s();case 4:if((m=p.n()).done){e.n=6;break}if(!(_=this.getFeatureFromId(y=m.value,d))){e.n=5;break}return h=y,g=_,e.a(3,6);case 5:e.n=4;break;case 6:e.n=8;break;case 7:e.p=7,p.e(e.v);case 8:return e.p=8,p.f(),e.f(8);case 9:if(h){e.n=11;break}return e.n=10,n.findOne({allIds:d}).session(r).exec();case 10:(h=e.v)&&i.push(h);case 11:if(h){e.n=12;break}throw v="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),o.error(v),new Error(v);case 12:if(null===(c=o.debug)||void 0===c||c.call(o,"*** TOP level feature found: ".concat(JSON.stringify(h))),g||(g=this.getFeatureFromId(h,d)),g){e.n=13;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 13:if(null===(l=o.debug)||void 0===l||l.call(o,"*** Found feature: ".concat(JSON.stringify(g))),g.min===A){e.n=14;break}throw o.error("Expected previous max does not match"),new Error("Expected previous max does not match");case 14:g.min=f,h._id.equals(g._id)?h.markModified("start"):h.markModified("children");case 15:e.n=2;break;case 16:e.n=18;break;case 17:e.p=17,a.e(e.v);case 18:return e.p=18,a.f(),e.f(18);case 19:b=0,C=i;case 20:if(!(b<C.length)){e.n=25;break}return I=C[b],e.p=21,e.n=22,I.save();case 22:e.n=24;break;case 23:throw e.p=23,E=e.v,null===(w=o.debug)||void 0===w||w.call(o,"*** FAILED: ".concat(E)),E;case 24:b++,e.n=20;break;case 25:return e.a(2)}}),e,this,[[21,23],[3,7,8,9],[1,17,18,19]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(a=(o=r.value).newStart,s=t.getFeature(i=o.featureId)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 4:s.setMin(a);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,n=this.changes,r=this.logger,o=this.typeName;return new t({changedIds:V(this.changedIds).reverse(),typeName:o,changes:V(n).reverse().map((function(e){return{featureId:e.featureId,oldStart:e.newStart,newStart:e.oldStart}})),assembly:e},{logger:r})}}]);var n,r,o}(pt);function Gr(e){return"LocationStartChange"===e.typeName}function Hr(e,t){for(var n=[],r=0;r<e.length;r+=t){var o=e.slice(r,r+t);n.push(o)}return n}function Yr(e){var t,n,r=e,o=null===(t=r.attributes.get("gff_id"))||void 0===t?void 0:t.join(",");if(o)return"ID=".concat(o," (_id: ").concat(e._id.toString(),")");var i=null===(n=r.attributes.get("gff_name"))||void 0===n?void 0:n.join(",");return i?"Name=".concat(i," (_id: ").concat(e._id.toString(),")"):"_id: ".concat(e._id.toString())}function zr(e){var t={};if(!e)return t;for(var n=0,r=Object.entries(e);n<r.length;n++){var o=K(r[n],2),i=o[1];t[o[0]]=null==i?void 0:i.slice()}return t}function Kr(e){if(!e)return"";for(var t=[],n=0,r=Object.entries(e);n<r.length;n++){var o=K(r[n],2),i=o[1],a=o[0];a.startsWith("gff_")&&(a=(a=a.slice(4)).charAt(0).toUpperCase()+a.slice(1)),t.push(i?"".concat(a,"=").concat(i.join(",")):a)}return encodeURIComponent(t.join(";"))}var Wr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoMergeExonsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonsToRestore:o.exonsToRestore,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,o.s();case 2:if((i=o.n()).done){e.n=8;break}if(c=(a=i.value).parentFeatureId,2===(s=a.exonsToRestore).length){e.n=3;break}throw new Error("Expected exactly two exons to restore. Got :".concat(s.length));case 3:return e.n=4,n.findOne({allIds:c}).session(r).exec();case 4:if(l=e.v){e.n=5;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 5:if(u=this.getFeatureFromId(l,c)){e.n=6;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(l._id.toString(),'"'));case 6:u.children||(u.children=new Map),d=F(s);try{for(d.s();!(A=d.n()).done;)this.addChild(u,h=A.value),g=this.getChildFeatureIds(h),(f=l.allIds).push.apply(f,[h._id].concat(V(g)))}catch(e){d.e(e)}finally{d.f()}return e.n=7,l.save();case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,o.e(e.v);case 10:return e.p=10,o.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[1,9,10,11]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(i=(o=r.value).exonsToRestore,a=o.parentFeatureId){e.n=4;break}throw new Error("Parent ID is missing");case 4:if(s=t.getFeature(a)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 5:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),c=F(i);try{for(c.s();!(l=c.n()).done;)s.addChild(l.value)}catch(e){c.e(e)}finally{c.f()}case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{firstExon:e.exonsToRestore[0],secondExon:e.exonsToRestore[1],parentFeatureId:e.parentFeatureId}}));return new Vr({changedIds:r,typeName:"MergeExonsChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Vr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","MergeExonsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Exons successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstExon:o.firstExon,secondExon:o.secondExon,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A,f;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).firstExon,s=t.secondExon,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(l=e.v){e.n=2;break}throw u="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(u),new Error(u);case 2:if(d=c.getFeatureFromId(l,i._id)){e.n=3;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 3:return d.min=Math.min(i.min,s.min),d.max=Math.max(i.max,s.max),(A=d.attributes?JSON.parse(JSON.stringify(d.attributes)):{}).merged_with=[Kr(zr(s.attributes))],d.attributes=A,(f=Qr(l,s._id,c)).push(s._id),l.allIds=l.allIds.filter((function(e){return!f.includes(e)})),e.n=4,l.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(l=(s=r.value).secondExon,u=t.getFeature((c=s.firstExon)._id)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(c._id,'"'));case 4:u.setMin(Math.min(c.min,l.min)),u.setMax(Math.max(c.max,l.max)),d=null!==(o=null===(i=u.attributes.get("merged_with"))||void 0===i?void 0:i.slice())&&void 0!==o?o:[],A=Kr(zr(l.attributes)),d.includes(A)||d.push(A),u.setAttribute("merged_with",d),null===(a=u.parent)||void 0===a||a.deleteChild(l._id);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{exonsToRestore:[e.firstExon,e.secondExon],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Wr({changedIds:o,typeName:"UndoMergeExonsChange",changes:i,assembly:t},{logger:r})}}]);var n,r,o}(pt),$r=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoMergeTranscriptsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,transcriptsToRestore:o.transcriptsToRestore,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,o.s();case 2:if((i=o.n()).done){e.n=8;break}if(c=(a=i.value).parentFeatureId,2===(s=a.transcriptsToRestore).length){e.n=3;break}throw new Error("Expected exactly two transcripts to restore. Got :".concat(s.length));case 3:return e.n=4,n.findOne({allIds:c}).session(r).exec();case 4:if(l=e.v){e.n=5;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 5:if(u=this.getFeatureFromId(l,c)){e.n=6;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(l._id.toString(),'"'));case 6:u.children||(u.children=new Map),d=F(s);try{for(d.s();!(A=d.n()).done;)this.addChild(u,h=A.value),g=this.getChildFeatureIds(h),(f=l.allIds).push.apply(f,[h._id].concat(V(g)))}catch(e){d.e(e)}finally{d.f()}return e.n=7,l.save();case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,o.e(e.v);case 10:return e.p=10,o.f(),e.f(10);case 11:return e.a(2)}}),e,this,[[1,9,10,11]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(i=(o=r.value).transcriptsToRestore,a=o.parentFeatureId){e.n=4;break}throw new Error("Parent ID is missing");case 4:if(s=t.getFeature(a)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(a,'"'));case 5:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),c=F(i);try{for(c.s();!(l=c.n()).done;)s.addChild(l.value)}catch(e){c.e(e)}finally{c.f()}case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{firstTranscript:e.transcriptsToRestore[0],secondTranscript:e.transcriptsToRestore[1],parentFeatureId:e.parentFeatureId}}));return new Xr({changedIds:r,typeName:"MergeTranscriptsChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),Xr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","MergeTranscriptsChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Transcripts successfully merged"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,firstTranscript:o.firstTranscript,secondTranscript:o.secondTranscript,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(i=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).firstTranscript,s=t.secondTranscript,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(l=e.v){e.n=2;break}throw u="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(u),new Error(u);case 2:if(d=c.getFeatureFromId(l,i._id)){e.n=3;break}throw o.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 3:return c.mergeTranscriptsOnServer(d,s),(A=Qr(l,s._id,c)).push(s._id),l.allIds=l.allIds.filter((function(e){return!A.includes(e)})),e.n=4,l.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return i.apply(this,arguments)})},{key:"mergeTranscriptsOnServer",value:function(e,t){e.min=Math.min(e.min,t.min),e.max=Math.max(e.max,t.max);var n=e.attributes?JSON.parse(JSON.stringify(e.attributes)):{};if(t.attributes&&(Object.keys(n).includes("merged_with")||(n.merged_with=[]),n.merged_with.push(Kr(zr(t.attributes)))),e.attributes=n,t.children)for(var r=0,o=Object.entries(t.children);r<o.length;r++){var i=K(o[r],2);this.mergeFeatureIntoTranscriptOnServer(i[1],e)}}},{key:"mergeFeatureIntoTranscriptOnServer",value:function(e,t){var n=this;t.children||(t.children=new Map);var r,i,a,s=!1,c=F(t.children);try{for(c.s();!(a=c.n()).done;){var l=K(a.value,2)[1];if(s&&r?i=!0:(i=!1,r=l),r.type===e.type&&r.type===l.type&&o.doesIntersect2(e.min,e.max,r.min,r.max)&&o.doesIntersect2(l.min,l.max,r.min,r.max)){r.min=Math.min(e.min,r.min,l.min),r.max=Math.max(e.max,r.max,l.max),r.attributes||(r.attributes={});var u=JSON.parse(JSON.stringify(r.attributes));Object.keys(u).includes("merged_with")||(u.merged_with=[]);var d=u.merged_with;if(d.push(Kr(zr(e.attributes))),i){var A=l.attributes?JSON.parse(JSON.stringify(l.attributes)):void 0;d.push(Kr(A)),t.children.delete(l._id.toString())}u.merged_with=V(new Set(d)),r.attributes=u,s=!0}}}catch(e){c.e(e)}finally{c.f()}s&&r&&e.children&&Object.entries(e.children).map((function(e){var t=K(e,2);n.addChild(r,t[1])})),this.addChild(t,s&&r?r:e)}},{key:"executeOnClient",value:(r=B(U().m((function e(t){var n,r,o,i,a,s,c,l;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=6;break}if(i=K(r.value,2),a=i[1],c=(s=this.changes[i[0]]).secondTranscript,l=t.getFeature(s.firstTranscript._id)){e.n=4;break}throw new Error('Could not find feature with identifier "'.concat(a,'"'));case 4:this.mergeTranscriptsOnClient(l,c),null===(o=l.parent)||void 0===o||o.deleteChild(c._id);case 5:e.n=3;break;case 6:e.n=8;break;case 7:e.p=7,n.e(e.v);case 8:return e.p=8,n.f(),e.f(8);case 9:return e.a(2)}}),e,this,[[2,7,8,9]])}))),function(e){return r.apply(this,arguments)})},{key:"mergeTranscriptsOnClient",value:function(e,t){var n,r;e.setMin(Math.min(e.min,t.min)),e.setMax(Math.max(e.max,t.max));var o=null!==(n=null===(r=e.attributes.get("merged_with"))||void 0===r?void 0:r.slice())&&void 0!==n?n:[],i=Kr(zr(t.attributes));if(o.includes(i)||o.push(i),e.setAttribute("merged_with",o),t.children)for(var a=0,s=Object.entries(t.children);a<s.length;a++){var c=K(s[a],2);this.mergeFeatureIntoTranscriptOnClient(c[1],e)}}},{key:"mergeFeatureIntoTranscriptOnClient",value:function(e,t){t.children||(t.children=new Map);var n,r,i,a=!1,s=F(t.children);try{for(s.s();!(i=s.n()).done;){var l=K(i.value,2)[1];if(a&&n?r=!0:(r=!1,n=l),n.type===e.type&&n.type===l.type&&o.doesIntersect2(e.min,e.max,n.min,n.max)&&o.doesIntersect2(l.min,l.max,n.min,n.max)){var u,d;n.setMin(Math.min(e.min,n.min,l.min)),n.setMax(Math.max(e.max,n.max,l.max));var A=null!==(u=null===(d=n.attributes.get("merged_with"))||void 0===d?void 0:d.slice())&&void 0!==u?u:[];A.push(Kr(zr(e.attributes))),r&&(A.push(Kr(c.getSnapshot(l).attributes)),t.deleteChild(l._id)),n.setAttribute("merged_with",V(new Set(A))),a=!0}}}catch(e){s.e(e)}finally{s.f()}a&&n&&e.children&&Object.entries(e.children).map((function(e){var t=K(e,2);n.addChild(t[1])})),t.addChild(a&&n?c.getSnapshot(n):e)}},{key:"executeOnLocalGFF3",value:(n=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{transcriptsToRestore:[e.firstTranscript,e.secondTranscript],parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new $r({changedIds:o,typeName:"UndoMergeTranscriptsChange",changes:i,assembly:t},{logger:r})}}]);var n,r,i}(pt),Zr=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","UndoSplitExonChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToRestore:o.exonToRestore,parentFeatureId:o.parentFeatureId,idsToDelete:o.idsToDelete,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=F(this.changes),e.p=1,a=U().m((function e(){var t,o,a,c,l,u,d,A;return U().w((function(e){for(;;)switch(e.n){case 0:return a=(o=i.value).exonToRestore,c=o.parentFeatureId,l=o.idsToDelete,e.n=1,n.findOne({allIds:c}).session(r).exec();case 1:if(u=e.v){e.n=2;break}throw new Error('Could not find feature with ID "'.concat(c,'"'));case 2:if(d=s.getFeatureFromId(u,c)){e.n=3;break}throw new Error('Could not find feature with ID "'.concat(c,'" in feature "').concat(u._id.toString(),'"'));case 3:return d.children||(d.children=new Map),s.addChild(d,a),A=s.getChildFeatureIds(a),(t=u.allIds).push.apply(t,[a._id].concat(V(A))),u.allIds=u.allIds.filter((function(e){return!l.includes(e)})),l.map((function(e){return Qr(u,e,s)})),e.n=4,u.save();case 4:return e.a(2)}}),e)})),o.s();case 2:if((i=o.n()).done){e.n=4;break}return e.d(Y(a()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,o.e(e.v);case 6:return e.p=6,o.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changes),e.p=2,o=U().m((function e(){var n,o,i,a,s;return U().w((function(e){for(;;)switch(e.n){case 0:if(o=(n=r.value).exonToRestore,a=n.idsToDelete,i=n.parentFeatureId){e.n=1;break}throw new Error("Parent ID is missing");case 1:if(s=t.getFeature(i)){e.n=2;break}throw new Error('Could not find parent feature "'.concat(i,'"'));case 2:s.attributes.get("_id")||s.setAttribute("_id",[s._id]),s.addChild(o),a.map((function(e){s.deleteChild(e)}));case 3:return e.a(2)}}),e)})),n.s();case 3:if((r=n.n()).done){e.n=5;break}return e.d(Y(o()),4);case 4:e.n=3;break;case 5:e.n=7;break;case 6:e.p=6,n.e(e.v);case 7:return e.p=7,n.f(),e.f(7);case 8:return e.a(2)}}),e,this,[[2,6,7,8]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=V(this.changedIds).reverse(),o=V(t).reverse().map((function(e){return{parentFeatureId:e.parentFeatureId,exonToBeSplit:e.exonToRestore,upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return new eo({changedIds:r,typeName:"SplitExonChange",changes:o,assembly:e},{logger:n})}}]);var n,r,o}(pt),eo=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","SplitExonChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"notification",get:function(){return"Exon successfully split"}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,exonToBeSplit:o.exonToBeSplit,parentFeatureId:o.parentFeatureId,upstreamCut:o.upstreamCut,downstreamCut:o.downstreamCut,leftExonId:o.leftExonId,rightExonId:o.rightExonId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c=this;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,o=this.logger,i=F(this.changes),e.p=1,s=U().m((function e(){var t,i,s,l,u,d,A,f,h,g,p,m,y,_,v;return U().w((function(e){for(;;)switch(e.n){case 0:return i=(t=a.value).exonToBeSplit,s=t.parentFeatureId,l=t.upstreamCut,u=t.downstreamCut,d=t.leftExonId,A=t.rightExonId,e.n=1,n.findOne({allIds:i._id}).session(r).exec();case 1:if(f=e.v){e.n=2;break}throw h="*** ERROR: The following featureId was not found in database ='".concat(i._id,"'"),o.error(h),new Error(h);case 2:if(null!=(g=c.getFeatureFromId(f,s))&&g.children){e.n=3;break}throw new Error("ERROR: There should be at least one child (i.e. the exon to be split)");case 3:return p=c.makeSplitExons(i,l,u,d,A),m=K(p,2),_=m[1],g.children.set((y=m[0])._id,q(q({allIds:[]},y),{},{_id:y._id})),g.children.set(_._id,q(q({allIds:[]},_),{},{_id:_._id})),g.children=new Map(V(g.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),(v=Qr(f,i._id,c)).push(i._id),f.allIds=f.allIds.filter((function(e){return!v.includes(e)})),f.allIds.push(y._id,_._id),e.n=4,f.save();case 4:return e.a(2)}}),e)})),i.s();case 2:if((a=i.n()).done){e.n=4;break}return e.d(Y(s()),3);case 3:e.n=2;break;case 4:e.n=6;break;case 5:e.p=5,i.e(e.v);case 6:return e.p=6,i.f(),e.f(6);case 7:return e.a(2)}}),e,this,[[1,5,6,7]])}))),function(e){return o.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(r=B(U().m((function e(t){return U().w((function(e){for(;;)switch(e.n){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:return e.a(2)}}),e)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnClient",value:(n=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:if(t){e.n=1;break}throw new Error("No data store");case 1:n=F(this.changedIds.entries()),e.p=2,n.s();case 3:if((r=n.n()).done){e.n=7;break}if(o=K(r.value,1),a=(i=this.changes[o[0]]).exonToBeSplit,c=i.upstreamCut,l=i.downstreamCut,u=i.leftExonId,d=i.rightExonId,s=i.parentFeatureId){e.n=4;break}throw new Error("TODO: Split exon without parent");case 4:if(A=this.makeSplitExons(a,c,l,u,d),f=K(A,2),h=f[0],g=f[1],p=t.getFeature(s)){e.n=5;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 5:p.addChild(h),p.addChild(g),t.getFeature(a._id)&&t.deleteFeature(a._id);case 6:e.n=3;break;case 7:e.n=9;break;case 8:e.p=8,n.e(e.v);case 9:return e.p=9,n.f(),e.f(9);case 10:return e.a(2)}}),e,this,[[2,8,9,10]])}))),function(e){return n.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=V(this.changedIds).reverse(),i=V(n).reverse().map((function(e){return{exonToRestore:e.exonToBeSplit,parentFeatureId:e.parentFeatureId,idsToDelete:[e.leftExonId,e.rightExonId],upstreamCut:e.upstreamCut,downstreamCut:e.downstreamCut,leftExonId:e.leftExonId,rightExonId:e.rightExonId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(i),"'")),new Zr({changedIds:o,typeName:"UndoSplitExonChange",changes:i,assembly:t},{logger:r})}},{key:"makeSplitExons",value:function(e,t,n,r,o){var i=JSON.parse(JSON.stringify(e));delete i.attributes._id,delete i.attributes.gff_id;var a=structuredClone(i);a._id=r,a.max=t;var s=structuredClone(i);return s.min=n,s._id=o,[a,s]}}]);var n,r,o}(pt),to=function(e){function t(e,n){var r;return N(this,t),T(r=Q(this,t,[e,n]),"typeName","StrandChange"),T(r,"changes",void 0),r.changes="changes"in e?e.changes:[e],r}return O(t,e),D(t,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=K(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStrand:o.oldStrand,newStrand:o.newStrand}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(o=B(U().m((function e(t){var n,r,o,i,a,s,c,l,u,d,A,f,h,g,p,m,y,_,v,b,C,I,w,E,x;return U().w((function(e){for(;;)switch(e.p=e.n){case 0:n=t.featureModel,r=t.session,i=this.logger,a=[],s=F(o=this.changes),e.p=1,s.s();case 2:if((c=s.n()).done){e.n=8;break}return A=(d=c.value).featureId,f=d.oldStrand,e.n=3,n.findOne({allIds:A}).session(r).exec();case 3:if(h=e.v){e.n=4;break}throw g="*** ERROR: The following featureId was not found in database ='".concat(A,"'"),i.error(g),new Error(g);case 4:if(null===(l=i.debug)||void 0===l||l.call(i,"*** Feature found: ".concat(JSON.stringify(h))),p=this.getFeatureFromId(h,A)){e.n=5;break}throw i.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 5:if(null===(u=i.debug)||void 0===u||u.call(i,"*** Found feature: ".concat(JSON.stringify(p))),p.strand===f){e.n=6;break}throw m="*** ERROR: Feature's current strand \"".concat(h.strand,'" doesn\'t match with expected value "').concat(f,'"'),i.error(m),new Error(m);case 6:a.push({feature:p,topLevelFeature:h});case 7:e.n=2;break;case 8:e.n=10;break;case 9:e.p=9,s.e(e.v);case 10:return e.p=10,s.f(),e.f(10);case 11:y=F(o.entries()),e.p=12,y.s();case 13:if((_=y.n()).done){e.n=19;break}return b=K(_.value,2),w=(C=a[b[0]]).topLevelFeature,(I=C.feature).strand=b[1].newStrand,w._id.equals(I._id)?w.markModified("strand"):w.markModified("children"),e.p=14,e.n=15,w.save();case 15:e.n=17;break;case 16:throw e.p=16,x=e.v,null===(E=i.debug)||void 0===E||E.call(i,"*** FAILED: ".concat(x)),x;case 17:null===(v=i.debug)||void 0===v||v.call(i,"*** Object updated in Mongo. 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Array(r),i=0;e.forEach((function(e,n){Xo(e,!1,(function(e){var a;o[n]=e,++i===r&&(a=o.join(ci),t.doWrite(a,(function(){t.writable=!0,t.emitReserved("drain")})))}))}))}(e)}},{key:"uri",value:function(){var e=this.opts.secure?"https":"http",t=this.query||{};return!1!==this.opts.timestampRequests&&(t[this.opts.timestampParam]=wi()),this.supportsBinary||t.sid||(t.b64=1),this.createUri(e,t)}},{key:"request",value:function(){var e=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};return Object.assign(e,{xd:this.xd,cookieJar:this.cookieJar},this.opts),new Ni(this.uri(),e)}},{key:"doWrite",value:function(e,t){var n=this,r=this.request({method:"POST",data:e});r.on("success",t),r.on("error",(function(e,t){n.onError("xhr post error",e,t)}))}},{key:"doPoll",value:function(){var e=this,t=this.request();t.on("data",this.onData.bind(this)),t.on("error",(function(t,n){e.onError("xhr poll error",t,n)})),this.pollXhr=t}}])}(_i),Ni=function(e){function t(e,n){var r;return N(this,t),pi(r=Q(this,t),n),r.opts=n,r.method=n.method||"GET",r.uri=e,r.data=void 0!==n.data?n.data:null,r.create(),r}return O(t,e),D(t,[{key:"create",value:function(){var e,n=this,r=fi(this.opts,"agent","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","autoUnref");r.xdomain=!!this.opts.xd;var o=this.xhr=new Si(r);try{o.open(this.method,this.uri,!0);try{if(this.opts.extraHeaders)for(var i in o.setDisableHeaderCheck&&o.setDisableHeaderCheck(!0),this.opts.extraHeaders)this.opts.extraHeaders.hasOwnProperty(i)&&o.setRequestHeader(i,this.opts.extraHeaders[i])}catch(e){}if("POST"===this.method)try{o.setRequestHeader("Content-type","text/plain;charset=UTF-8")}catch(e){}try{o.setRequestHeader("Accept","*/*")}catch(e){}null===(e=this.opts.cookieJar)||void 0===e||e.addCookies(o),"withCredentials"in o&&(o.withCredentials=this.opts.withCredentials),this.opts.requestTimeout&&(o.timeout=this.opts.requestTimeout),o.onreadystatechange=function(){var e;3===o.readyState&&(null===(e=n.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?n.onLoad():n.setTimeoutFn((function(){n.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){n.onError(e)}),0)}"undefined"!=typeof document&&(this.index=t.requestsCount++,t.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=Bi,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete t.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}])}(di);function Ri(){for(var e in Ni.requests)Ni.requests.hasOwnProperty(e)&&Ni.requests[e].abort()}Ni.requestsCount=0,Ni.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",Ri):"function"==typeof addEventListener&&addEventListener("onpagehide"in Ai?"pagehide":"unload",Ri,!1));var Di=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),Fi=Ai.WebSocket||Ai.MozWebSocket,Ti="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),ji=function(e){function t(e){var n;return N(this,t),(n=Q(this,t,[e])).supportsBinary=!e.forceBase64,n}return O(t,e),D(t,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=Ti?{}:fi(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=Ti?new Fi(e,t,n):t?new Fi(e,t):new Fi(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;Xo(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Di((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=wi()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!Fi}}])}(_i),Mi=function(e){function t(){return N(this,t),Q(this,t,arguments)}return O(t,e),D(t,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){ri||(ri=new TextDecoder);var n=[],r=0,o=-1,i=!1;return new TransformStream({transform:function(a,s){for(n.push(a);;){if(0===r){if(li(n)<1)break;var c=ui(n,1);i=128==(128&c[0]),r=(o=127&c[0])<126?3:126===o?1:2}else if(1===r){if(li(n)<2)break;var l=ui(n,2);o=new DataView(l.buffer,l.byteOffset,l.length).getUint16(0),r=3}else if(2===r){if(li(n)<8)break;var u=ui(n,8),d=new DataView(u.buffer,u.byteOffset,u.length),A=d.getUint32(0);if(A>Math.pow(2,21)-1){s.enqueue(Ko);break}o=A*Math.pow(2,32)+d.getUint32(4),r=3}else{if(li(n)<o)break;var f=ui(n,o);s.enqueue(ii(i?f:ri.decode(f),t)),r=0}if(0===o||o>e){s.enqueue(Ko);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){Wo&&e.data instanceof Blob?e.data.arrayBuffer().then(ei).then(t):Vo&&(e.data instanceof ArrayBuffer||$o(e.data))?t(ei(e.data)):Xo(e,!1,(function(e){zo||(zo=new TextEncoder),t(zo.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var i=new DataView(r.buffer);i.setUint8(0,126),i.setUint16(1,o)}else{r=new Uint8Array(9);var a=new DataView(r.buffer);a.setUint8(0,127),a.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter();var i=function(){r.read().then((function(t){t.done||(e.onPacket(t.value),i())})).catch((function(e){}))};i();var a={type:"open"};e.query.sid&&(a.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(a).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Di((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}])}(_i),Oi={websocket:ji,webtransport:Mi,polling:Qi},Li=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Pi=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function qi(e){var t,n,r=e,o=e.indexOf("["),i=e.indexOf("]");-1!=o&&-1!=i&&(e=e.substring(0,o)+e.substring(o,i).replace(/:/g,";")+e.substring(i,e.length));for(var a,s=Li.exec(e||""),c={},l=14;l--;)c[Pi[l]]=s[l]||"";return-1!=o&&-1!=i&&(c.source=r,c.host=c.host.substring(1,c.host.length-1).replace(/;/g,":"),c.authority=c.authority.replace("[","").replace("]","").replace(/;/g,":"),c.ipv6uri=!0),c.pathNames=(n=(t=c.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),c.queryKey=(a={},c.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(a[t]=n)})),a),c}var Ji=function(e){function t(e){var n,r=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return N(this,t),(n=Q(this,t)).binaryType="arraybuffer",n.writeBuffer=[],e&&"object"===X(e)&&(r=e,e=null),e?(e=qi(e),r.hostname=e.host,r.secure="https"===e.protocol||"wss"===e.protocol,r.port=e.port,e.query&&(r.query=e.query)):r.host&&(r.hostname=qi(r.host).host),pi(n,r),n.secure=null!=r.secure?r.secure:"undefined"!=typeof location&&"https:"===location.protocol,r.hostname&&!r.port&&(r.port=n.secure?"443":"80"),n.hostname=r.hostname||("undefined"!=typeof location?location.hostname:"localhost"),n.port=r.port||("undefined"!=typeof location&&location.port?location.port:n.secure?"443":"80"),n.transports=r.transports||["polling","websocket","webtransport"],n.writeBuffer=[],n.prevBufferLen=0,n.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},r),n.opts.path=n.opts.path.replace(/\/$/,"")+(n.opts.addTrailingSlash?"/":""),"string"==typeof n.opts.query&&(n.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var i=n[r].split("=");t[decodeURIComponent(i[0])]=decodeURIComponent(i[1])}return t}(n.opts.query)),n.id=null,n.upgrades=null,n.pingInterval=null,n.pingTimeout=null,n.pingTimeoutTimer=null,"function"==typeof addEventListener&&(n.opts.closeOnBeforeunload&&(n.beforeunloadEventListener=function(){n.transport&&(n.transport.removeAllListeners(),n.transport.close())},addEventListener("beforeunload",n.beforeunloadEventListener,!1)),"localhost"!==n.hostname&&(n.offlineEventListener=function(){n.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",n.offlineEventListener,!1))),n.open(),n}return O(t,e),D(t,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Oi[e](n)}},{key:"open",value:function(){var e,n=this;if(this.opts.rememberUpgrade&&t.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){n.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var n=this,r=this.createTransport(e),o=!1;t.priorWebsocketSuccess=!1;var i=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(n.upgrading=!0,n.emitReserved("upgrading",r),!r)return;t.priorWebsocketSuccess="websocket"===r.name,n.transport.pause((function(){o||"closed"!==n.readyState&&(d(),n.setTransport(r),r.send([{type:"upgrade"}]),n.emitReserved("upgrade",r),r=null,n.upgrading=!1,n.flush())}))}else{var i=new Error("probe error");i.transport=r.name,n.emitReserved("upgradeError",i)}})))};function a(){o||(o=!0,d(),r.close(),r=null)}var s=function(e){var t=new Error("probe error: "+e);t.transport=r.name,a(),n.emitReserved("upgradeError",t)};function c(){s("transport closed")}function l(){s("socket closed")}function u(e){r&&e.name!==r.name&&a()}var d=function(){r.removeListener("open",i),r.removeListener("error",s),r.removeListener("close",c),n.off("close",l),n.off("upgrading",u)};r.once("open",i),r.once("error",s),r.once("close",c),this.once("close",l),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",t.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,n=this.upgrades.length;e<n;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced 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removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}])}(di);Ji.protocol=4;var Ui="function"==typeof ArrayBuffer,Gi=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},Hi=Object.prototype.toString,Yi="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===Hi.call(Blob),zi="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===Hi.call(File);function Ki(e){return Ui&&(e instanceof ArrayBuffer||Gi(e))||Yi&&e instanceof Blob||zi&&e instanceof File}function Wi(e,t){if(!e||"object"!==X(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(Wi(e[n]))return!0;return!1}if(Ki(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return Wi(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&Wi(e[o]))return!0;return!1}function Vi(e){var t=[],n=e;return n.data=$i(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function $i(e,t){if(!e)return e;if(Ki(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=$i(e[o],t);return r}if("object"===X(e)&&!(e instanceof Date)){var i={};for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(i[a]=$i(e[a],t));return i}return e}function Xi(e,t){return e.data=Zi(e.data,t),delete e.attachments,e}function Zi(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=Zi(e[n],t);else if("object"===X(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=Zi(e[r],t));return e}var ea,ta=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(ea||(ea={}));var na=function(){return D((function e(t){N(this,e),this.replacer=t}),[{key:"encode",value:function(e){return e.type!==ea.EVENT&&e.type!==ea.ACK||!Wi(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===ea.EVENT?ea.BINARY_EVENT:ea.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==ea.BINARY_EVENT&&e.type!==ea.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=Vi(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}])}();function ra(e){return"[object Object]"===Object.prototype.toString.call(e)}var oa=function(e){function t(e){var n;return N(this,t),(n=Q(this,t)).reviver=e,n}return O(t,e),D(t,[{key:"add",value:function(e){var n;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(n=this.decodeString(e)).type===ea.BINARY_EVENT;r||n.type===ea.BINARY_ACK?(n.type=r?ea.EVENT:ea.ACK,this.reconstructor=new ia(n),0===n.attachments&&W(t,"emitReserved",this,3)(["decoded",n])):W(t,"emitReserved",this,3)(["decoded",n])}else{if(!Ki(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(n=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,W(t,"emitReserved",this,3)(["decoded",n]))}}},{key:"decodeString",value:function(e){var n=0,r={type:Number(e.charAt(0))};if(void 0===ea[r.type])throw new Error("unknown packet type "+r.type);if(r.type===ea.BINARY_EVENT||r.type===ea.BINARY_ACK){for(var o=n+1;"-"!==e.charAt(++n)&&n!=e.length;);var i=e.substring(o,n);if(i!=Number(i)||"-"!==e.charAt(n))throw new Error("Illegal attachments");r.attachments=Number(i)}if("/"===e.charAt(n+1)){for(var a=n+1;++n&&","!==e.charAt(n)&&n!==e.length;);r.nsp=e.substring(a,n)}else r.nsp="/";var s=e.charAt(n+1);if(""!==s&&Number(s)==s){for(var c=n+1;++n;){var l=e.charAt(n);if(null==l||Number(l)!=l){--n;break}if(n===e.length)break}r.id=Number(e.substring(c,n+1))}if(e.charAt(++n)){var u=this.tryParse(e.substr(n));if(!t.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case ea.CONNECT:return ra(t);case ea.DISCONNECT:return void 0===t;case ea.CONNECT_ERROR:return"string"==typeof t||ra(t);case ea.EVENT:case ea.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===ta.indexOf(t[0]));case ea.ACK:case ea.BINARY_ACK:return Array.isArray(t)}}}])}(di),ia=function(){return D((function e(t){N(this,e),this.packet=t,this.buffers=[],this.reconPack=t}),[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=Xi(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}])}(),aa={__proto__:null,Decoder:oa,Encoder:na,get PacketType(){return ea}};function sa(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var ca=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),la=function(e){function t(e,n,r){var o;return N(this,t),(o=Q(this,t)).connected=!1,o.recovered=!1,o.receiveBuffer=[],o.sendBuffer=[],o._queue=[],o._queueSeq=0,o.ids=0,o.acks={},o.flags={},o.io=e,o.nsp=n,r&&r.auth&&(o.auth=r.auth),o._opts=Object.assign({},r),o.io._autoConnect&&o.open(),o}return O(t,e),D(t,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[sa(e,"open",this.onopen.bind(this)),sa(e,"packet",this.onpacket.bind(this)),sa(e,"error",this.onerror.bind(this)),sa(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(ca.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:ea.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var i=this.ids++,a=n.pop();this._registerAckCallback(i,a),o.id=i}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var i=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(i);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var i=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return i?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,i=new Array(o>1?o-1:0),a=1;a<o;a++)i[a-1]=arguments[a];t.apply(void 0,[null].concat(i))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:ea.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case ea.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case ea.EVENT:case ea.BINARY_EVENT:this.onevent(e);break;case ea.ACK:case ea.BINARY_ACK:this.onack(e);break;case ea.DISCONNECT:this.ondisconnect();break;case ea.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var n,r=F(this._anyListeners.slice());try{for(r.s();!(n=r.n()).done;)n.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}W(t,"emit",this,1).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),i=0;i<r;i++)o[i]=arguments[i];t.packet({type:ea.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:ea.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=F(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}])}(di);function ua(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}ua.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},ua.prototype.reset=function(){this.attempts=0},ua.prototype.setMin=function(e){this.ms=e},ua.prototype.setMax=function(e){this.max=e},ua.prototype.setJitter=function(e){this.jitter=e};var da=function(e){function t(e,n){var r,o;N(this,t),(r=Q(this,t)).nsps={},r.subs=[],e&&"object"===X(e)&&(n=e,e=void 0),(n=n||{}).path=n.path||"/socket.io",r.opts=n,pi(r,n),r.reconnection(!1!==n.reconnection),r.reconnectionAttempts(n.reconnectionAttempts||Infinity),r.reconnectionDelay(n.reconnectionDelay||1e3),r.reconnectionDelayMax(n.reconnectionDelayMax||5e3),r.randomizationFactor(null!==(o=n.randomizationFactor)&&void 0!==o?o:.5),r.backoff=new ua({min:r.reconnectionDelay(),max:r.reconnectionDelayMax(),jitter:r.randomizationFactor()}),r.timeout(null==n.timeout?2e4:n.timeout),r._readyState="closed",r.uri=e;var i=n.parser||aa;return r.encoder=new i.Encoder,r.decoder=new i.Decoder,r._autoConnect=!1!==n.autoConnect,r._autoConnect&&r.open(),r}return O(t,e),D(t,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Ji(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=sa(n,"open",(function(){r.onopen(),e&&e()})),i=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},a=sa(n,"error",i);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),i(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(a),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(sa(e,"ping",this.onping.bind(this)),sa(e,"data",this.ondata.bind(this)),sa(e,"error",this.onerror.bind(this)),sa(e,"close",this.onclose.bind(this)),sa(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Di((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new la(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var 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You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var i in o)this[i]=o[i];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),i=0;i<o.length;i++)if((n=this._input.match(this.rules[o[i]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=i,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[i])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". 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11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),i={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};o.readFileSync&&(i.moduleInclude=o.readFileSync(e.resolve("../include/module.js")),i.actionInclude=o.readFileSync(e.resolve("../include/action.js"))),t.exports=i},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),o=e("./slice"),i=e("static-eval"),a=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function c(t,n,o){var i=e("./index"),a=f(r.parse(n).body[0].expression,{"@":t.value}),s=o.replace(/\{\{\s*value\s*\}\}/g,a),c=i.nodes(t.value,s);return c.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),c}function l(e){return Array.isArray(e)}function u(e){return function(t,n,r,o){var i=t.value,a=t.path,s=[],c=function(t,i){var a;l(t)?(t.forEach((function(e,t){s.length>=o||r(t,e,n)&&s.push({path:i.concat(t),value:e})})),t.forEach((function(t,n){s.length>=o||e&&c(t,i.concat(n))}))):(a=t)&&!(a instanceof Array)&&a instanceof Object&&(this.keys(t).forEach((function(e){s.length>=o||r(e,t[e],n)&&s.push({path:i.concat(e),value:t[e]})})),this.keys(t).forEach((function(n){s.length>=o||e&&c(t[n],i.concat(n))})))}.bind(this);return c(i,a),s}}function d(e){return function(t,n,r){return this.descend(n,t.expression.value,e,r)}}function A(e){return function(t,n,r){return this.traverse(n,t.expression.value,e,r)}}function f(){try{return i.apply(this,arguments)}catch(e){}}function h(e){return e=e.filter((function(e){return e})),a(e,(function(e){return e.path.map((function(e){return String(e).replace("-","--")})).join("-")}))}function g(e){var t=String(e);return t.match(/^-?[0-9]+$/)?parseInt(t):null}s.prototype.initialize=function(){this.traverse=u(!0),this.descend=u()},s.prototype.keys=Object.keys,s.prototype.resolve=function(e){var t=[e.operation,e.scope,e.expression.type].join("-"),n=this._fns[t];if(!n)throw new Error("couldn't resolve key: "+t);return n.bind(this)},s.prototype.register=function(e,t){if(!t instanceof Function)throw new Error("handler must be a function");this._fns[e]=t},s.prototype._fns={"member-child-identifier":function(e,t){var n=e.expression.value,r=t.value;if(r instanceof Object&&n in r)return[{value:r[n],path:t.path.concat(n)}]},"member-descendant-identifier":A((function(e,t,n){return e==n})),"subscript-child-numeric_literal":d((function(e,t,n){return e===n})),"member-child-numeric_literal":d((function(e,t,n){return String(e)===String(n)})),"subscript-descendant-numeric_literal":A((function(e,t,n){return e===n})),"member-child-wildcard":d((function(){return!0})),"member-descendant-wildcard":A((function(){return!0})),"subscript-descendant-wildcard":A((function(){return!0})),"subscript-child-wildcard":d((function(){return!0})),"subscript-child-slice":function(e,t){if(l(t.value)){var n=e.expression.value.split(":").map(g),r=t.value.map((function(e,n){return{value:e,path:t.path.concat(n)}}));return o.apply(null,[r].concat(n))}},"subscript-child-union":function(e,t){var n=[];return e.expression.value.forEach((function(e){var r={operation:"subscript",scope:"child",expression:e.expression},o=this.resolve(r)(r,t);o&&(n=n.concat(o))}),this),h(n)},"subscript-descendant-union":function(t,n,r){var o=e(".."),i=this,a=[];return o.nodes(n,"$..*").slice(1).forEach((function(e){a.length>=r||t.expression.value.forEach((function(t){var n={operation:"subscript",scope:"child",expression:t.expression},r=i.resolve(n)(n,e);a=a.concat(r)}))})),h(a)},"subscript-child-filter_expression":function(e,t,n){var o=e.expression.value.slice(2,-1),i=r.parse(o).body[0].expression;return this.descend(t,null,(function(e,t){return f(i,{"@":t})}),n)},"subscript-descendant-filter_expression":function(e,t,n){var o=e.expression.value.slice(2,-1),i=r.parse(o).body[0].expression;return this.traverse(t,null,(function(e,t){return f(i,{"@":t})}),n)},"subscript-child-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$[{{value}}]")},"member-child-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$.{{value}}")},"member-descendant-script_expression":function(e,t){return c(t,e.expression.value.slice(1,-1),"$..value")}},s.prototype._fns["subscript-child-string_literal"]=s.prototype._fns["member-child-identifier"],s.prototype._fns["member-descendant-numeric_literal"]=s.prototype._fns["subscript-descendant-string_literal"]=s.prototype._fns["member-descendant-identifier"],t.exports=s},{"..":"jsonpath","./aesprim":"./aesprim","./index":5,"./slice":7,"static-eval":15,underscore:12}],5:[function(e,t,n){var r=e("assert"),o=e("./dict"),i=e("./parser"),a=e("./handlers"),s=function(){this.initialize.apply(this,arguments)};function c(e){return"[object String]"==Object.prototype.toString.call(e)}s.prototype.initialize=function(){this.parser=new i,this.handlers=new a},s.prototype.parse=function(e){return r.ok(c(e),"we need a 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r=i.resolve(e),c=[];a.forEach((function(i){if(!(s.length>=n)){var a=r(e,i,n);t==o.length-1?s=s.concat(a||[]):c=c.concat(a||[])}})),a=c}})),n?s.slice(0,n):s):a},s.prototype.stringify=function(e){r.ok(e,"we need a path");var t="$",n={"descendant-member":"..{{value}}","child-member":".{{value}}","descendant-subscript":"..[{{value}}]","child-subscript":"[{{value}}]"};return(e=this._normalize(e)).forEach((function(e){if("root"!=e.expression.type){var r,o=[e.scope,e.operation].join("-"),i=n[o];if(r="string_literal"==e.expression.type?JSON.stringify(e.expression.value):e.expression.value,!i)throw new Error("couldn't find template "+o);t+=i.replace(/{{value}}/,r)}})),t},s.prototype._normalize=function(e){if(r.ok(e,"we need a path"),"string"==typeof e)return this.parser.parse(e);if(Array.isArray(e)&&"string"==typeof e[0]){var t=[{expression:{type:"root",value:"$"}}];return e.forEach((function(e,n){"$"==e&&0===n||("string"==typeof e&&e.match("^"+o.identifier+"$")?t.push({operation:"member",scope:"child",expression:{value:e,type:"identifier"}}):t.push({operation:"subscript",scope:"child",expression:{value:e,type:"number"==typeof e?"numeric_literal":"string_literal"}}))})),t}if(Array.isArray(e)&&"object"==X(e[0]))return e;throw new Error("couldn't understand path "+e)},s.Handlers=a,s.Parser=i;var l=new s;l.JSONPath=s,t.exports=l},{"./dict":2,"./handlers":4,"./parser":6,assert:8}],6:[function(e,t,n){var r=e("./grammar"),o=e("../generated/parser"),i=function(){var e=new o.Parser,t=e.parseError;return e.yy.parseError=function(){e.yy.ast&&e.yy.ast.initialize(),t.apply(e,arguments)},e};i.grammar=r,t.exports=i},{"../generated/parser":1,"./grammar":3}],7:[function(e,t,n){function r(e){return String(e).match(/^[0-9]+$/)?parseInt(e):Number.isFinite(e)?parseInt(e,10):0}t.exports=function(e,t,n,o){if("string"==typeof t)throw new Error("start cannot be a string");if("string"==typeof n)throw new Error("end cannot be a 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n=0;n<e.length;n++)if(e[n]!==t[n])return!1;return!0}return r.isDate(e)&&r.isDate(t)?e.getTime()===t.getTime():r.isRegExp(e)&&r.isRegExp(t)?e.source===t.source&&e.global===t.global&&e.multiline===t.multiline&&e.lastIndex===t.lastIndex&&e.ignoreCase===t.ignoreCase:r.isObject(e)||r.isObject(t)?function(e,t){if(r.isNullOrUndefined(e)||r.isNullOrUndefined(t))return!1;if(e.prototype!==t.prototype)return!1;if(r.isPrimitive(e)||r.isPrimitive(t))return e===t;var n=A(e),i=A(t);if(n&&!i||!n&&i)return!1;if(n)return d(e=o.call(e),t=o.call(t));var a,s,c=g(e),l=g(t);if(c.length!=l.length)return!1;for(c.sort(),l.sort(),s=c.length-1;s>=0;s--)if(c[s]!=l[s])return!1;for(s=c.length-1;s>=0;s--)if(!d(e[a=c[s]],t[a]))return!1;return!0}(e,t):e==t}function A(e){return"[object Arguments]"==Object.prototype.toString.call(e)}function f(e,t){return!(!e||!t)&&("[object RegExp]"==Object.prototype.toString.call(t)?t.test(e):e instanceof t||!0===t.call({},e))}function h(e,t,n,o){var i;r.isString(n)&&(o=n,n=null);try{t()}catch(e){i=e}if(o=(n&&n.name?" 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r=t[n],o=t[n+1],a=o.wordIndex-r.wordIndex;if(1===a||-1===a){e.score+=1,1===a&&(e.score+=1);const t=Math.abs(o.position-(r.position+i[r.wordIndex].length))-1;e.score-=.05*t}}}return s}function su(e){return"string"==typeof e.id}function cu(e){return"string"==typeof e.sub&&"string"==typeof e.pred&&"string"==typeof e.obj}function lu(e){return Boolean(e.meta?.deprecated)}var uu,du,Au=(du||(du=1,uu=function e(t,n){if(t===n)return!0;if(t&&n&&"object"==X(t)&&"object"==X(n)){if(t.constructor!==n.constructor)return!1;var r,o,i;if(Array.isArray(t)){if((r=t.length)!=n.length)return!1;for(o=r;0!=o--;)if(!e(t[o],n[o]))return!1;return!0}if(t instanceof Map&&n instanceof Map){if(t.size!==n.size)return!1;var a,s=F(t.entries());try{for(s.s();!(a=s.n()).done;)if(!n.has((o=a.value)[0]))return!1}catch(e){s.e(e)}finally{s.f()}var c,l=F(t.entries());try{for(l.s();!(c=l.n()).done;)if(!e((o=c.value)[1],n.get(o[0])))return!1}catch(e){l.e(e)}finally{l.f()}return!0}if(t instanceof Set&&n instanceof Set){if(t.size!==n.size)return!1;var u,d=F(t.entries());try{for(d.s();!(u=d.n()).done;)if(!n.has((o=u.value)[0]))return!1}catch(e){d.e(e)}finally{d.f()}return!0}if(ArrayBuffer.isView(t)&&ArrayBuffer.isView(n)){if((r=t.length)!=n.length)return!1;for(o=r;0!=o--;)if(t[o]!==n[o])return!1;return!0}if(t.constructor===RegExp)return t.source===n.source&&t.flags===n.flags;if(t.valueOf!==Object.prototype.valueOf)return t.valueOf()===n.valueOf();if(t.toString!==Object.prototype.toString)return t.toString()===n.toString();if((r=(i=Object.keys(t)).length)!==Object.keys(n).length)return!1;for(o=r;0!=o--;)if(!Object.prototype.hasOwnProperty.call(n,i[o]))return!1;for(o=r;0!=o--;){var A=i[o];if(!e(t[A],n[A]))return!1}return!0}return t!=t&&n!=n}),uu),fu=ce(Au);async function hu(e){return function(e,t){var n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:{},r=n.blocked,o=n.upgrade,i=n.blocking,a=n.terminated,s=indexedDB.open(e,t),c=kl(s);return o&&s.addEventListener("upgradeneeded",(function(e){o(kl(s.result),e.oldVersion,e.newVersion,kl(s.transaction),e)})),r&&s.addEventListener("blocked",(function(e){return r(e.oldVersion,e.newVersion,e)})),c.then((function(e){a&&e.addEventListener("close",(function(){return a()})),i&&e.addEventListener("versionchange",(function(e){return i(e.oldVersion,e.newVersion,e)}))})).catch((function(){})),c}(e,2,{upgrade(e,t,n,r,o){if(t<2&&(e.objectStoreNames.contains("meta")&&e.deleteObjectStore("meta"),e.objectStoreNames.contains("nodes")&&e.deleteObjectStore("nodes"),e.objectStoreNames.contains("edges")&&e.deleteObjectStore("edges")),e.objectStoreNames.contains("meta")||e.createObjectStore("meta"),!e.objectStoreNames.contains("nodes")){e.createObjectStore("nodes",{keyPath:"id"});const t=r.objectStore("nodes");t.createIndex("by-label","lbl"),t.createIndex("by-type","type"),t.createIndex("by-synonym",["meta","synonyms","val"]),t.createIndex("full-text-words","fullTextWords",{multiEntry:!0})}if(!e.objectStoreNames.contains("edges")){e.createObjectStore("edges",{autoIncrement:!0});const t=r.objectStore("edges");t.createIndex("by-subject","sub"),t.createIndex("by-object","obj"),t.createIndex("by-predicate","pred")}}})}function gu(e){const t=new Set;for(const[,n]of e)t.add(n);return[...t]}async function pu(e){const t=Date.now();let n,r=1;this.options.update?.("Parsing JSON",r);try{n=JSON.parse(await p.openLocation(this.sourceLocation).readFile("utf8"))}catch{throw new Error("Error in loading ontology")}r+=5,this.options.update?.("Parsing JSON complete",r);const o=Date.now(),[i,...a]=n.graphs??[];if(i){if(a.length>0)throw new Error("multiple graphs not supported");try{const n=e.transaction(["meta","nodes","edges"],"readwrite");await n.objectStore("meta").clear(),await n.objectStore("nodes").clear(),await n.objectStore("edges").clear();const a=n.objectStore("nodes"),s=mu.call(this).map((e=>e.jsonPath));if(i.nodes){let e=Math.round(r);for(const[,t]of i.nodes.entries())r+=1/i.nodes.length*64,Math.round(r)!=e&&r<100&&(this.options.update?.("Processing nodes",r),e=Math.round(r)),su(t)&&await a.add({...t,fullTextWords:gu(ou(t,s,this.prefixes))})}const c=n.objectStore("edges");if(i.edges){let e=Math.round(r);for(const[,t]of i.edges.entries())r+=1/i.edges.length*30,Math.round(r)!=e&&r<100&&(this.options.update?.("Processing edges",r),e=Math.round(r)),cu(t)&&await c.add(t)}await n.done;const l=e.transaction("meta","readwrite"),{update:u,...d}=this.options;await l.objectStore("meta").add({ontologyRecord:{name:this.ontologyName,version:this.ontologyVersion,sourceLocation:this.sourceLocation},storeOptions:d,graphMeta:i.meta,timestamp:String(new Date),schemaVersion:2,timings:{overall:Date.now()-t,load:Date.now()-o}},"meta"),await l.done}catch(t){throw await e.transaction("meta","readwrite").objectStore("meta").clear(),t}}}function mu(){return[{displayName:"ID",jsonPath:Zl},...this.options.textIndexing?.indexFields??Cu]}async function yu(e){const[t]=await e.transaction("meta").objectStore("meta").getAll();return!!t&&fu(this.options.prefixes,t.storeOptions.prefixes)&&fu(this.options.textIndexing,t.storeOptions.textIndexing)}class _u{ontologyName;ontologyVersion;sourceLocation;db;options;loadOboGraphJson=pu;getTermsByFulltext=iu;openDatabase=hu;isDatabaseCurrent=yu;get textIndexFields(){return mu.call(this)}get prefixes(){return this.options.prefixes??new Map}DEFAULT_MAX_SEARCH_RESULTS=100;constructor(e,t,n,r){this.ontologyName=e,this.ontologyVersion=t,this.sourceLocation=n,this.options=r??{},this.db=this.prepareDatabase()}validate(){const e=[],{sourceLocation:t,sourceType:n}=this;return n?"obo-graph-json"!==n&&e.push(new Error(`ontology source file ${JSON.stringify(t)} has type ${n}, which is not yet supported`)):e.push(new Error(`unable to determine format of ontology source file ${JSON.stringify(t)}, file name must end with ".json", ".obo", or ".owl"`)),e}get sourceType(){if(o.isUriLocation(this.sourceLocation)){if(this.sourceLocation.uri.endsWith(".json"))return"obo-graph-json"}else if(o.isLocalPathLocation(this.sourceLocation)&&this.sourceLocation.localPath.endsWith(".json"))return"obo-graph-json"}get dbName(){return`Apollo Ontology "${this.ontologyName}" "${this.ontologyVersion}"`}async prepareDatabase(){const e=this.validate();if(e.length>0)throw e;const t=await this.openDatabase(this.dbName);if(await this.isDatabaseCurrent(t))return t;try{const{options:e,sourceLocation:n,sourceType:r}=this;if("obo-graph-json"!==r)throw new Error(`ontology source file ${JSON.stringify(n)} has type ${r}, which is not yet supported`);return e.update?.("",0),await this.loadOboGraphJson(t),e.update?.("",100),t}catch(e){throw t.close(),await function(e){var t=(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}).blocked,n=indexedDB.deleteDatabase(e);return t&&n.addEventListener("blocked",(function(e){return t(e.oldVersion,e)})),kl(n).then((function(){}))}(this.dbName),e}}async termCount(e){const t=await this.db;return(e??t.transaction("nodes")).objectStore("nodes").count()}unique(e){const t=new Map,n=[];for(const r of e)t.has(r.id)||(t.set(r.id,!0),n.push(r));return n}async getTermsWithLabelOrSynonym(e,t,n){const r=t?.includeSubclasses??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=i.objectStore("nodes"),s=[...await a.index("by-label").getAll(e),...await a.index("by-synonym").getAll(e)];if(r){const e=await this.recurseEdges("by-object",s.map((e=>e.id)),(e=>"is_a"===e.pred),"sub",i);for(const t of e){const e=await a.get(t);e&&s.push(e)}}return s}async getPropertiesByLabel(e,t,n){const r=t?.includeSubProperties??!0,o=await this.db,i=n??o.transaction(["nodes","edges"]),a=(await this.getTermsWithLabelOrSynonym(e,{includeSubclasses:!1},i)).filter((e=>Eu(e)));if(r){const e=await this.recurseEdges("by-object",a.map((e=>e.id)),(e=>"subPropertyOf"===e.pred),"sub",i),t=i.objectStore("nodes");for(const n of e){const e=await t.get(n);e&&Eu(e)&&a.push(e)}}return a}async recurseEdges(e,t,n,r,o){const i=new Set;return await async function t(a){await Promise.all([...a].map((async a=>{const s=(await o.objectStore("edges").index(e).getAll(a)).filter((e=>n(e))).map((e=>e[r]));if(s.length>0){for(const e of s)i.add(e);await t(s)}})))}(t),i.values()}async*expandNodeSet(e,t="is_a",n,r){const o=await this.db,i=r??o.transaction(["edges"]),a=[...e],s=await this.recurseEdges("subclasses"===n?"by-object":"by-subject",a,(e=>e.pred===t),"subclasses"===n?"sub":"obj",i);for(const e of a)yield e;for(const e of s)yield e}expandSubclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"subclasses",n)}expandSuperclasses(e,t="is_a",n){return this.expandNodeSet(e,t,"superclasses",n)}async getClassesThat(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=await this.getPropertiesByLabel(e,{includeSubProperties:!0},o),a=new Set(i.map((e=>e.id))),s=await async function(e){const t=[];for await(const n of e)t.push(n);return t}(this.expandSuperclasses(t.map((e=>e.id)),"is_a",o)),c=await this.recurseEdges("by-object",s,(e=>a.has(e.pred)),"sub",o),l=this.expandSubclasses(c,"is_a",o),u=[];for await(const e of l){const t=await o.objectStore("nodes").get(e);t&&wu(t)&&!lu(t)&&u.push(t)}return u}async getClassesWithoutPropertyLabeled(e,t,n){const r=await this.db,o=n??r.transaction(["nodes","edges"]),i=o.objectStore("nodes"),a=o.objectStore("edges"),s=(await this.getPropertiesByLabel(e,t,o)).map((e=>e.id)),c=await(async()=>{const e=new Set;for(const t of s)for await(const n of a.index("by-predicate").iterate(t))e.add(n.value.sub);const t=new Set;for await(const n of this.expandSubclasses(e,"is_a",o))t.add(n);return t})(),l=[];for await(const e of i){const t=e.value;wu(t)&&!c.has(t.id)&&l.push(t.id)}const u=[];for(const e of l){const t=await o.objectStore("nodes").get(e);t&&wu(t)&&!lu(t)&&u.push(t)}return u}async getAllClasses(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").index("by-type").getAll("CLASS")).filter((e=>!lu(e)))}async getAllTerms(e){const t=await this.db,n=e??t.transaction(["nodes"]);return(await n.objectStore("nodes").getAll()).filter((e=>!lu(e)))}}const vu=c.types.model("OntologyRecord",{name:c.types.string,version:"unversioned",source:c.types.union(g.LocalPathLocation,g.UriLocation,g.BlobLocation),options:c.types.frozen(),equivalentTypes:c.types.map(c.types.array(c.types.string))}).volatile((e=>({dataStore:void 0,startedEquivalentTypeRequests:new Set}))).actions((e=>({ping(){},initDataStore(){e.dataStore=new _u(e.name,e.version,c.getSnapshot(e.source),e.options)},afterCreate(){c.addDisposer(e,l.autorun((()=>{this.initDataStore()})))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).actions((e=>({loadEquivalentTypes:c.flow((function*(t){if(!e.dataStore)return;if(e.startedEquivalentTypeRequests.has(t))return;e.startedEquivalentTypeRequests.add(t);const n=(yield e.dataStore.getTermsWithLabelOrSynonym(t)).map((e=>e.lbl)).filter((e=>null!=e));c.isAlive(e)&&e.setEquivalentTypes(t,n)}))}))).actions((e=>({afterCreate(){l.autorun((t=>{e.dataStore&&(e.loadEquivalentTypes("gene"),e.loadEquivalentTypes("pseudogene"),e.loadEquivalentTypes("transcript"),e.loadEquivalentTypes("pseudogenic_transcript"),e.loadEquivalentTypes("CDS"),e.loadEquivalentTypes("mRNA"),t.dispose())}))},setEquivalentTypes(t,n){e.equivalentTypes.set(t,n)}}))).views((e=>({isTypeOf(t,n){if(t===n)return!0;if(!e.dataStore)return!1;const r=e.equivalentTypes.get(n);return r?r.includes(t):(e.loadEquivalentTypes(n),!1)}}))),bu=c.types.model("OntologyManager",{ontologies:c.types.array(vu),prefixes:c.types.optional(c.types.map(c.types.string),{"GO:":"http://purl.obolibrary.org/obo/GO_","SO:":"http://purl.obolibrary.org/obo/SO_"})}).views((e=>({get featureTypeOntologyName(){const t=c.getRoot(e).jbrowse.configuration;return n.readConfObject(t.ApolloPlugin,"featureTypeOntologyName")}}))).views((e=>({get featureTypeOntology(){return this.findOntology(e.featureTypeOntologyName)},findOntology:(t,n)=>e.ontologies.find((e=>e.name===t&&(void 0===n||e.version===n))),openOntology(e,t){return this.findOntology(e,t)?.dataStore},applyPrefixes:t=>Xl(t,e.prefixes),expandPrefixes:t=>function(e,t){for(const[n,r]of t.entries())if(e.startsWith(String(n)))return e.replace(String(n),r);return e}(t,e.prefixes)}))).actions((e=>({addOntology(t,n,r,o){const i=e.ontologies.push({name:t,version:n,source:r,options:{prefixes:new Map(e.prefixes.entries()),...o}});e.ontologies[i-1].ping()}}))),Cu=[{displayName:"Label",jsonPath:"$.lbl"},{displayName:"Synonym",jsonPath:"$.meta.synonyms[*].val"},{displayName:"Definition",jsonPath:"$.meta.definition.val"}],Iu=n.ConfigurationSchema("OntologyRecord",{name:{type:"string",description:'the full name of the ontology, e.g. "Gene Ontology"',defaultValue:"My Ontology"},version:{type:"string",description:"the ontology's version string",defaultValue:"unversioned"},source:{type:"fileLocation",description:"the download location for the ontology's source file",defaultValue:{locationType:"UriLocation",uri:"http://example.com/myontology.json"}},textIndexFields:{type:"frozen",description:"JSON paths for text fields that will be indexed for text searching",defaultValue:Cu}});function wu(e){return"CLASS"===e.type}function Eu(e){return"PROPERTY"===e.type}async function xu(e,t,n){if(!e)return;const r=await t.getTermsWithLabelOrSynonym(e.type,{includeSubclasses:!1}),o=r.filter(wu);if(0===r.length)return;const i=await t.getClassesThat("part_of",o);return 0!==i.length?i:void 0}function Su({fetchValidTerms:e,filterTerms:t,includeDeprecated:n,onChange:r,ontologyName:o,ontologyVersion:a,renderInput:c,session:l,style:d,value:A}){const[f,h]=u.useState(!1),[g,p]=u.useState(),[m,y]=u.useState(""),[_,v]=u.useState(),{ontologyManager:b}=l.apolloDataStore,C=b.findOntology(o,a)?.dataStore,I=C&&f&&!g,w=C&&!_,E=u.useCallback((e=>(n||!lu(e))&&(!t||t(e))),[t,n]);u.useEffect((()=>{const e=new AbortController,{signal:t}=e;return w&&async function(e,t,n,r){if(!t)return;const o=(await e.getTermsWithLabelOrSynonym(t,{includeSubclasses:!1})).find((e=>(n??(()=>!0))(e)));if(!o)throw new Error(`not a valid ${e.ontologyName} term`);return o}(C,A,E).then((e=>{y(""),t.aborted||v(e)}),(e=>{t.aborted||Hl(e)||y(String(e))})),()=>{e.abort(new DOMException("Cancel getting current term from ontology store","AbortError"))}}),[l,A,E,C,w]),u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return I&&async function(e,t,n,r){let o;if(t){const n=await t(e,r);n&&(o=n)}return o||(o=await e.getAllTerms()),n?o.filter((e=>n(e))):o}(C,e,E,n).then((e=>{e&&!n.aborted&&p(e)}),(e=>{n.aborted||Hl(e)||l.notify(e instanceof Error?e.message:String(e),"error")})),()=>{t.abort(new DOMException("Canceling getting valid terms from ontology store","AbortError"))}}),[I,E,C,l,e]);const x={};return m&&(x.error=!0,x.helperText=m),i.jsx(s.Autocomplete,{style:d,autoComplete:!0,filterSelectedOptions:!0,disableClearable:!0,selectOnFocus:!0,clearOnBlur:!0,handleHomeEndKeys:!0,freeSolo:!0,value:A,options:g??[],onOpen:()=>{h(!0)},onClose:()=>{h(!1)},loading:I,renderInput:c??(e=>i.jsx(s.TextField,{...e,...x})),getOptionLabel:e=>"string"==typeof e?e:e.lbl??"",isOptionEqualToValue:(e,t)=>e.lbl===t.lbl,onChange:(e,t)=>{t&&("string"==typeof t?(v(void 0),r(A,t)):t.lbl!==A&&(y(""),v(t),r(A,t.lbl)))}})}function Bu({changeManager:e,handleClose:t,session:n,sourceAssemblyId:r,sourceFeature:o}){const[a,c]=u.useState(String(o.max)),[l,d]=u.useState(String(o.min+1)),[A,f]=u.useState(""),[h,g]=u.useState(""),[p,m]=u.useState(""),y=Number(a)<=Number(l);return i.jsxs(Al,{open:!0,title:"Add new child feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog",children:[i.jsxs("form",{onSubmit:function(i){i.preventDefault(),g("");const s=(new ut).toHexString(),c=new Nr({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:s,refSeq:o.refSeq,min:Number(l)-1,max:Number(a),type:A},parentFeatureId:o._id});e.submit(c).then((()=>{n.apolloSetSelectedFeature(s)})),t(),i.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:l,onChange:e=>{d(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:a,onChange:e=>{c(e.target.value)},error:y,helperText:y?'"End" must be greater than "Start"':null}),i.jsx(Su,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:A,filterTerms:wu,fetchValidTerms:async function(e,t,n){const r=await xu(e,t);if(r)return r;m(`Type "${e?.type}" does not have any children in the ontology`)}.bind(null,o),renderInput:e=>i.jsx(s.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0,error:Boolean(p),helperText:p}),onChange:(e,t)=>{var n;t&&(n=t,g(""),f(n))}})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:y||!(l&&a&&A),children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),h?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:h})}):null]})}class ku{clientStore;constructor(e){this.clientStore=e}}class Qu{dataStore;constructor(e){this.dataStore=e}recentChanges=[];undoneChanges=[];async submit(e,t={}){const{addToRecents:n=!0,submitToBackend:r=!0,updateJobsManager:i=!1}=t,a=o.getSession(this.dataStore),s=new AbortController,{jobsManager:c,isLocked:l,changeInProgress:u,setChangeInProgress:d}=o.getSession(this.dataStore);if(l)return a.notify("Cannot submit changes in locked mode"),void d(!1);if(u)return void a.notify("Could not submit change, there is another change still in progress");d(!0);const A={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort(new DOMException(`Cancelling change "${e.typeName}"`,"AbortError"))}};i&&c.runJob(A);const f=await co.frontendPreValidate(e);if(!f.ok){const e=`Pre-validation failed: "${f.resultsMessages}"`;return i&&c.abortJob(A.name,e),a.notify(e,"error"),void d(!1)}try{await e.execute(this.dataStore)}catch(e){return i&&c.abortJob(A.name,String(e)),console.error(e),a.notify(`Error encountered in client: ${String(e)}. Data may be out of sync, please refresh the page`,"error"),void d(!1)}if((await co.frontendPostValidate(e,this.dataStore)).ok||await this.undo(e),r){i&&c.update(A.name,"Submitting to driver");const{collaborationServerDriver:r,getBackendDriver:o}=this.dataStore,s=ie(e)?o(e.assembly)??r:r;let l;try{l=await s.submitChange(e,t)}catch(t){return i&&c.abortJob(A.name,String(t)),console.error(t),a.notify(String(t),"error"),await this.undo(e,!1),void d(!1)}if(!l.ok){const t=`Post-validation failed: "${f.resultsMessages}"`;return i&&c.abortJob(A.name,t),a.notify(t,"error"),await this.undo(e,!1),void d(!1)}e.notification&&a.notify(e.notification,"success"),n&&(this.recentChanges.push(e),this.undoneChanges=[])}i&&c.done(A),d(!1)}async undo(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async redo(e,t=!0){return this.submit(e,{submitToBackend:t,addToRecents:!1})}async undoLastChange(){const e=o.getSession(this.dataStore),t=this.recentChanges.pop();if(t)return this.undoneChanges.push(t),this.undo(t);e.notify("No changes to undo!","info")}async redoLastChange(){const e=o.getSession(this.dataStore),t=this.undoneChanges.pop();if(t)return this.recentChanges.push(t),this.redo(t);e.notify("No changes to redo!","info")}}class Nu extends ku{inFlight=new Map;refSeqMaps=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),i=new URLSearchParams({assemblies:t.join(","),term:e});o.search=i.toString();const a=o.toString(),s=await this.fetch(n,a);if(!s.ok){const e=await ll(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:n,refName:r,start:i}=e,{assemblyManager:a}=o.getSession(this.clientStore);if(!a.get(t))throw new Error(`Could not find assembly with name "${t}"`);const s=(await this.getRefSeqMapping(t)).get(r);if(!s)throw new Error(`Could not find refSeq "${r}"`);const c=s.id,l=this.clientStore.getInternetAccount(t),{baseURL:u}=l,d=new URL("features/getFeatures",u),A=new URLSearchParams({refSeq:c,start:String(i),end:String(n)});d.search=A.toString();const f=d.toString(),h=await this.fetch(l,f);if(!h.ok){const e=await ll(h,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,r,l),h.json()}checkSocket(e,t,n){const{socket:r}=n,o=n.retrieveToken();if(!o)return;const i=vo(o),a=`${e}-${t}`,s=new Qu(this.clientStore);r.hasListeners(a)||r.on(a,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId===i)return;const t=oe.fromJSON(e.changeInfo);var r;ie(r=t)&&void 0!==r.changedIds&&this.haveDataForChange(t)&&await s.submit(t,{submitToBackend:!1})}))}haveDataForChange(e){const{assembly:t,changedIds:n}=e;if(!this.clientStore.assemblies.get(t))return!1;for(const e of n)if(this.clientStore.getFeature(e))return!0;return!1}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,n=this.inFlight.get(t),{assemblyName:r,end:i,refName:a,start:s}=e,{assemblyManager:c}=o.getSession(this.clientStore);if(!c.get(r))throw new Error(`Could not find assembly with name "${r}"`);const l=(await this.getRefSeqMapping(r)).get(a);if(!l)throw new Error(`Could not find refSeq "${a}"`);const u=l.id;if(n)return{seq:await n,refSeq:u};let d=this.clientStore.assemblies.get(r);d||(d=this.clientStore.addAssembly(r));let A=d.refSeqs.get(u);A||(A=d.addRefSeq(u,a));const f=A.getSequence(s,i);if(f.length===i-s)return{seq:f,refSeq:u};const h=this.clientStore.getInternetAccount(r),{baseURL:g}=h,p=new URL("sequence",g),m=new URLSearchParams({refSeq:u,start:String(s),end:String(i)});p.search=m.toString();const y=p.toString(),_=this.getSeqFromServer(h,y,A,s,i);this.inFlight.set(t,_);const v=await _;return this.checkSocket(r,a,h),this.inFlight.delete(t),{seq:v,refSeq:u}}async getSeqFromServer(e,t,n,r,o){const i=await this.fetch(e,t);if(!i.ok){let e;try{e=await i.text()}catch{e=""}throw new Error(`getSequence failed: ${i.status} (${i.statusText})${e?` (${e})`:""}`)}const a=await i.text();return n.addSequence({sequence:a,start:r,stop:o}),a}async getRefSeqMapping(e){const t=this.refSeqMaps.get(e);if(t)return t;const{assemblyManager:n}=o.getSession(this.clientStore);if(!n.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:i}=r,a=new URL("refSeqs",i),s=new URLSearchParams({assembly:e});a.search=s.toString();const c=a.toString(),l=await this.fetch(r,c);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}const u=await l.json(),d=new Map(u.map((e=>[e.name,{refName:e.name,id:e._id,aliases:e.aliases}])));return this.refSeqMaps.set(e,d),d}async getRefNameAliases(e){return[...(await this.getRefSeqMapping(e)).values()].map((e=>({refName:e.refName,aliases:[...new Set([e.id,...e.aliases])],uniqueId:`alias-${e.id}`})))}async getRefSeqId(e,t){const n=await this.getRefSeqMapping(e);if(!n)return;const r=n.get(t);return r?.id}async getRegions(e){const{assemblyManager:t}=o.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const n=this.clientStore.getInternetAccount(e),{baseURL:r}=n,i=new URL("refSeqs",r),a=new URLSearchParams({assembly:e});i.search=a.toString();const s=i.toString(),c=await this.fetch(n,s);if(!c.ok){let e;try{e=await c.text()}catch{e=""}throw new Error(`getRegions failed: ${c.status} (${c.statusText})${e?` (${e})`:""}`)}return(await c.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=o.getSession(this.clientStore);return t.assemblies.filter((t=>{const r=n.getConf(t,["sequence","metadata"]);return!(!(r&&r.apollo&&r.internetAccountConfigId)||e&&r.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,i=new URL("changes",o).href,a=await this.fetch(r,i,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!a.ok){const e=await ll(a,"submitChange failed");throw new Error(e)}const s=new ao;return a.ok||(s.ok=!1),s}}class Ru extends ku{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=this.clientStore.assemblies.get(t);if(!i)return{seq:"",refSeq:r};const a=i.refSeqs.get(r);return a?{seq:a.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=o.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=n.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await Oc(e);n.addCheckResults(t)}return new ao}async searchFeatures(e,t){return[]}}class Du extends ku{async loadAssembly(e){const{assemblyManager:t}=o.getSession(this.clientStore),r=t.get(e);if(!r)throw new Error(`Assembly ${e} not found`);const{file:i}=n.getConf(r,["sequence","metadata"]),a=require("node:fs");return Mc(e,await a.promises.readFile(i,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,i=(await this.getAssembly(t)).refSeqs.get(r);if(!i)throw new Error(`refSeq ${r} not found in client data store`);return{seq:i.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=o.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=n.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!ie(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=o.getSession(this.clientStore),r=t.get(e.assembly);if(!r)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:i}=n.getConf(r,["sequence","metadata"]),a=this.clientStore.assemblies.get(e.assembly);if(!a)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...a.refSeqs.keys()),{checkResults:l}=this.clientStore;for(const e of l.values())s.has(e.refSeq)&&l.delete(e._id);const u=await Oc(a);this.clientStore.addCheckResults(u);const d=[{directive:"gff-version",value:"3"}];for(const[,e]of a.refSeqs)d.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of a.comments)d.push({comment:e});for(const[,e]of a.refSeqs){const{features:t}=e;for(const[,e]of t)d.push(yt(c.getSnapshot(e)))}for(const[,e]of a.refSeqs){const[t]=e.sequence,n=Hr(t.sequence,80).join("\n");d.push({id:e.name,description:e.description,sequence:n})}const A=jc.formatSync(d),f=require("node:fs");return await f.promises.writeFile(i,A,"utf8"),new ao}async searchFeatures(e,t){return[]}}var Fu;function Tu(e,t,n,r){const o={_id:(new ut).toHexString(),refSeq:e,type:"CDS",min:n,max:r,strand:t},i={_id:(new ut).toHexString(),refSeq:e,type:"exon",min:n,max:r,strand:t},a={};return a[o._id]=o,a[i._id]=i,{_id:(new ut).toHexString(),refSeq:e,type:"mRNA",min:n,max:r,strand:t,children:a}}function ju({changeManager:e,handleClose:t,region:n,session:r}){const[o,a]=u.useState(String(n.end)),[c,l]=u.useState(String(n.start+1)),[d,A]=u.useState(Fu.GENE_AND_SUBFEATURES),[f,h]=u.useState(""),[g,p]=u.useState(),[m,y]=u.useState(""),_=Number(o)<=Number(c);let v=Boolean(_)||!(c&&o&&d);return(d===Fu.CUSTOM&&!f||!g&&d===Fu.GENE_AND_SUBFEATURES||!g&&d===Fu.TRANSCRIPT_AND_SUBFEATURES)&&(v=!0),i.jsxs(Al,{open:!0,title:"Add new feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog",children:[i.jsxs("form",{onSubmit:async function(i){i.preventDefault(),y("");const a=r.apolloDataStore.getBackendDriver(n.assemblyName);if(!a)return void y("No backend driver found");let s=n.refName;if(a instanceof Nu){const e=await a.getRefSeqId(n.assemblyName,n.refName);if(!e)return void y(`Could not find refSeq for "${n.refName}"`);s=e}if(d===Fu.GENE_AND_SUBFEATURES){const i=Tu(s,g,Number(c)-1,Number(o)),a={};a[i._id]=i;const l=(new ut).toHexString(),u=new Nr({changedIds:[l],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:l,refSeq:s,min:Number(c)-1,max:Number(o),type:"gene",strand:g,children:a}});return e.submit(u).then((()=>{r.apolloSetSelectedFeature(l)})),void t()}if(d===Fu.TRANSCRIPT_AND_SUBFEATURES){const i=Tu(s,g,Number(c)-1,Number(o)),a=new Nr({changedIds:[i._id],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:i});return e.submit(a).then((()=>{r.apolloSetSelectedFeature(i._id)})),void t()}if(!f)return void y("No type selected");const l=(new ut).toHexString(),u=new Nr({changedIds:[l],typeName:"AddFeatureChange",assembly:n.assemblyName,addedFeature:{_id:l,refSeq:s,min:Number(c)-1,max:Number(o),type:f,strand:g}});e.submit(u).then((()=>{r.apolloSetSelectedFeature(l)})),t()},"data-testid":"submit-form",children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:Number(c),onChange:e=>{l(e.target.value)}}),i.jsx(s.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:o,onChange:e=>{a(e.target.value)},error:_,helperText:_?'"End" must be greater than "Start"':null}),i.jsxs(s.FormControl,{children:[i.jsx(s.InputLabel,{id:"demo-simple-select-label",children:"Strand"}),i.jsxs(s.Select,{labelId:"demo-simple-select-label",id:"demo-simple-select",label:"Strand",value:g?.toString(),onChange:function(e){switch(y(""),Number(e.target.value)){case 1:p(1);break;case-1:p(-1);break;default:p(void 0)}},children:[i.jsx(s.MenuItem,{value:void 0}),i.jsx(s.MenuItem,{value:1,children:"+"}),i.jsx(s.MenuItem,{value:-1,children:"-"})]})]}),i.jsx(s.FormControl,{style:{marginTop:20},children:i.jsxs(s.RadioGroup,{"aria-labelledby":"demo-radio-buttons-group-label",defaultValue:Fu.GENE_AND_SUBFEATURES,name:"radio-buttons-group",value:d,onChange:e=>{y("");const{value:t}=e.target;Object.keys(Fu).includes(t)&&A(Fu[t])},children:[i.jsx(s.FormControlLabel,{value:Fu.GENE_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add gene and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a gene with a single mRNA, exon, and CDS",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(xc,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Fu.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:i.jsxs(s.Box,{display:"flex",alignItems:"center",children:["Add transcript and sub-features",i.jsx(s.Tooltip,{title:"This is a shortcut to create a single mRNA with exon and CDS, but without a parent gene",children:i.jsx(s.IconButton,{size:"small",children:i.jsx(xc,{sx:{fontSize:18}})})})]})}),i.jsx(s.FormControlLabel,{value:Fu.CUSTOM,checked:d!==Fu.GENE_AND_SUBFEATURES&&d!==Fu.TRANSCRIPT_AND_SUBFEATURES,control:i.jsx(s.Radio,{}),label:"Add feature with a sequence ontology type"})]})}),d===Fu.CUSTOM?i.jsx(Su,{session:r,ontologyName:"Sequence Ontology",style:{width:170},value:f,filterTerms:wu,renderInput:e=>i.jsx(s.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0}),onChange:(e,t)=>{var n;t&&(n=t,y(""),h(n))}}):null]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:v,children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),m?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:m})}):null]})}function Mu(e,t){const n=(new ut).toHexString();t.push(n);const r={};if(e.children)for(const n of Object.values(e.children)){const e=Mu(n,t);r[e._id]=e}const o="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString();return{...e,refSeq:o,children:e.children&&r,_id:n}}function Ou({changeManager:e,handleClose:t,session:r,sourceAssemblyId:o,sourceFeature:a}){const{assemblyManager:l}=r,d=l.assemblyList,[A,f]=u.useState(d.find((e=>e.name!==o))?.name),[h,g]=u.useState([]),[p,m]=u.useState(""),[y,_]=u.useState(a.min),[v,b]=u.useState("");function C(e,t){const n={};if(e.children)for(const r of Object.values(e.children)){const e=C(r,t);e.refSeq=p,e.min=e.min+t,e.max=e.max+t,n[e._id]=e}const r="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString(),o="string"==typeof e._id?e._id:e._id.toHexString();return{...e,refSeq:r,children:e.children&&n,_id:o}}return u.useEffect((()=>{(async function(){if(m(""),!A)return void b("No assemblies to copy to");const e=await l.waitForAssembly(A);if(!e)return;const{refNameAliases:t}=e;if(!t)return;const n=[...Object.entries(t)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t})));g(n),m(n[0]?._id||"")})().catch((e=>{b(String(e))}))}),[A,l]),i.jsxs(Al,{open:!0,title:"Copy features and annotations",handleClose:t,maxWidth:!1,"data-testid":"copy-feature",children:[i.jsxs("form",{onSubmit:async function(n){if(!A)return;n.preventDefault(),b("");const o=a.length,i=await l.waitForAssembly(A);if(!i)return void b(`Assembly not found: ${A}.`);const s=i.getCanonicalRefName(p),u=i.regions?.find((e=>e.refName===s));if(!u)return void b(`RefSeq not found: ${p}.`);const d=y+o;if(d>u.end)return void b(`Feature would extend beyond the bounds of the selected reference sequence. (Feature would end at ${d}, but reference sequence ends at ${u.end})`);if(y<u.start)return void b(`Reference sequence starts at ${u.start}, feature cannot start before that.`);const f=[],h=Mu(c.getSnapshot(a),f),g={...h.attributes};"Parent"in g&&delete g.Parent,h.refSeq=p;const m=y-h.min;h.min=y,h.max=y+o;const _=C(h,m),v=new Nr({changedIds:[h._id],typeName:"AddFeatureChange",assembly:A,addedFeature:{_id:h._id,refSeq:h.refSeq,min:h.min,max:h.max,type:h.type,children:_.children,attributes:g,strand:h.strand},copyFeature:!0,allIds:f});e.submit(v).then((()=>{r.apolloSetSelectedFeature(h._id)})),t(),n.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.DialogContentText,{children:"Target assembly"}),i.jsx(s.Select,{labelId:"label",value:A,onChange:function(e){f(e.target.value)},children:d.filter((e=>e.name!==o)).map((e=>i.jsx(s.MenuItem,{value:e.name,children:n.readConfObject(e,"displayName")},e.name)))}),i.jsx(s.DialogContentText,{children:"Target reference sequence"}),i.jsx(s.Select,{labelId:"label",value:p,onChange:function(e){m(e.target.value)},children:h.map((e=>i.jsx(s.MenuItem,{value:e._id,children:e.name},e._id)))}),i.jsx(s.DialogContentText,{children:"Start position in target reference sequence"}),i.jsx(s.TextField,{margin:"dense",type:"number",fullWidth:!0,variant:"outlined",value:y,onChange:e=>{_(Number(e.target.value))}})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!A||!p||!y,variant:"contained",type:"submit",children:"Submit"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),v?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:v})}):null]})}function Lu({changeManager:e,handleClose:t,session:n}){const{internetAccounts:r}=c.getRoot(n),[o,a]=u.useState(""),[l,d]=u.useState(!1),[A,f]=u.useState(!1),h=r.filter((e=>"ApolloInternetAccount"===e.type));if(0===h.length)throw new Error("No Apollo internet account found");const[g,p]=u.useState(h[0]),{collaborationServerDriver:m}=n.apolloDataStore,y=m.getAssemblies(),[_,v]=u.useState(y.at(0));return i.jsxs(Al,{open:!0,title:"Delete Assembly",handleClose:t,maxWidth:!1,"data-testid":"delete-assembly",children:[i.jsxs("form",{onSubmit:async function(n){if(n.preventDefault(),f(!0),a(""),!_)return void a("Must select assembly!");const r=new Fr({typeName:"DeleteAssemblyChange",assembly:_.name});await e.submit(r,{internetAccountId:g.internetAccountId}),t(),n.preventDefault()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[h.length>1?i.jsxs(i.Fragment,{children:[i.jsx(s.DialogContentText,{children:"Select 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deleted"})})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!_||!l,variant:"contained",type:"submit",children:"Delete"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:t,children:"Cancel"})]})]}),o?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:o})}):null]})}function Pu({changeManager:e,handleClose:t,selectedFeature:n,session:r,setSelectedFeature:o,sourceAssemblyId:a,sourceFeature:l}){const[d,A]=u.useState(""),{ontologyManager:f}=r.apolloDataStore,{featureTypeOntology:h}=f;function g(e){if(!e.parent?.children||1===e.parent.children.size)return;const t=[];for(const n of e.parent.children.values())h?.isTypeOf(n.type,"CDS")||t.push(n);t.sort(((e,t)=>e.min-t.min));const n=[];for(const t of e.parent.children.values())h?.isTypeOf(t.type,"CDS")||n.push(t);if(n.sort(((e,t)=>t.max-e.max)),e.min===t[0].min){let n;for(const r of t)if(r._id!==e._id&&r.min>=e.min){n=r.min;break}if(n&&n!=e.parent.min)return{typeName:"LocationStartChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.min,newLocation:n}}if(e.max===n[0].max){let t;for(const r of n)if(r._id!=e._id&&r.max<=e.max){t=r.max;break}if(t&&t!=e.parent.max)return{typeName:"LocationEndChange",changedId:e.parent._id,featureId:e.parent._id,oldLocation:e.parent.max,newLocation:t}}}return i.jsxs(Al,{open:!0,title:"Delete feature",handleClose:t,maxWidth:!1,"data-testid":"delete-feature",children:[i.jsxs("form",{onSubmit:r=>{!async function(r){r.preventDefault(),A(""),n?._id===l._id&&o();const i=[],s=new kr({changedIds:[l._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:c.getSnapshot(l),parentFeatureId:l.parent?._id}]});if(h&&(h.isTypeOf(l.type,"transcript")||h.isTypeOf(l.type,"pseudogenic_transcript"))){const e=g(l);e&&i.push(e)}if(h&&h.isTypeOf(l.type,"exon")){const e=function(e){if(!h)return;if(!h.isTypeOf(e.type,"exon"))return;if(!e.parent?.cdsLocations||0===e.parent.cdsLocations.length||0===e.parent.cdsLocations[0].length)return;if(!e.parent.children)throw new Error("Unable to find parent of CDS");if(1!=e.parent.cdsLocations.length)throw new Error("Unable to handle a transcript with multiple CDSs");const t=(e.parent.cdsLocations.at(0)??[]).sort((({min:e},{min:t})=>e-t));let n;for(const r of e.parent.children.values())if(r.type===t[0].type){n=r;break}if(!n)throw new Error("Unable to find CDS");const r=t[0].min,o=t[t.length-1].max;if(!(e.min>r&&e.max<o||e.max<r||e.min>o)){if(e.min<=r&&e.max>=o)return new kr({changedIds:[n._id],typeName:"DeleteFeatureChange",assembly:a,changes:[{deletedFeature:c.getSnapshot(n),parentFeatureId:n.parent?._id}]});if(e.min<=r&&e.max>r){let r;for(const n of t)if(n.min>e.max){r=n.min;break}if(!r)throw new Error("Error setting new CDS 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e.children)r._id!=t.featureId&&r.max>n&&(n=r.max);n!=e.max&&i.push({typeName:t.typeName,changedId:e._id,featureId:e._id,oldLocation:e.max,newLocation:n})}}}const u=function(e,t){if(0===e.length)return;const n=new Ur({typeName:"LocationStartChange",changedIds:[],changes:[],assembly:t}),r=new qr({typeName:"LocationEndChange",changedIds:[],changes:[],assembly:t});for(const t of e)"LocationStartChange"===t.typeName&&(n.changedIds.push(t.changedId),n.changes.push({featureId:t.featureId,oldStart:t.oldLocation,newStart:t.newLocation})),"LocationEndChange"===t.typeName&&(r.changedIds.push(t.changedId),r.changes.push({featureId:t.featureId,oldEnd:t.oldLocation,newEnd:t.newLocation}));if(n.changedIds.length>0&&0===r.changedIds.length)return n;if(r.changedIds.length>0&&0===n.changedIds.length)return r;throw new Error("Unexpected list of changes")}(i,a);await e.submit(s),u&&await 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200<=t.status&&299>=t.status}function r(e){try{e.dispatchEvent(new MouseEvent("click"))}catch(n){var t=document.createEvent("MouseEvents");t.initMouseEvent("click",!0,!0,window,0,0,0,80,20,!1,!1,!1,!1,0,null),e.dispatchEvent(t)}}var o="object"==("undefined"==typeof window?"undefined":X(window))&&window.window===window?window:"object"==("undefined"==typeof self?"undefined":X(self))&&self.self===self?self:"object"==X(se)&&se.global===se?se:void 0,i=o.navigator&&/Macintosh/.test(navigator.userAgent)&&/AppleWebKit/.test(navigator.userAgent)&&!/Safari/.test(navigator.userAgent),a=o.saveAs||("object"!=("undefined"==typeof window?"undefined":X(window))||window!==o?function(){}:"download"in HTMLAnchorElement.prototype&&!i?function(e,i,a){var s=o.URL||o.webkitURL,c=document.createElement("a");c.download=i=i||e.name||"download",c.rel="noopener","string"==typeof 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s="application/octet-stream"===e.type,c=/constructor/i.test(o.HTMLElement)||o.safari,l=/CriOS\/[\d]+/.test(navigator.userAgent);if((l||s&&c||i)&&"undefined"!=typeof FileReader){var u=new FileReader;u.onloadend=function(){var e=u.result;e=l?e:e.replace(/^data:[^;]*;/,"data:attachment/file;"),a?a.location.href=e:location=e,a=null},u.readAsDataURL(e)}else{var d=o.URL||o.webkitURL,A=d.createObjectURL(e);a?a.location=A:location.href=A,a=null,setTimeout((function(){d.revokeObjectURL(A)}),4e4)}});o.saveAs=a.saveAs=a,e.exports=a}()}(Ju)),Ju.exports);function Gu({handleClose:e,session:t}){const[r,o]=u.useState(!1),[a,l]=u.useState(),[d,A]=u.useState(""),{collaborationServerDriver:f,getInternetAccount:h,inMemoryFileDriver:g}=t.apolloDataStore,p=[...f.getAssemblies(),...g.getAssemblies()];return i.jsxs(Al,{open:!0,title:"Export GFF3",handleClose:e,maxWidth:!1,"data-testid":"download-gff3",children:[i.jsxs("form",{onSubmit:async function(o){if(o.preventDefault(),A(""),!a)return void A("Must select 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s){const{end:t,refName:n,start:r}=e;i.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of o){const{features:t}=e;if(t)for(const[,e]of t)i.push(yt(c.getSnapshot(e)))}for(const e of s){const{refName:t,seq:n}=e;i.push({id:t,description:"",sequence:n})}const l=jc.formatSync(i),u=new Blob([l],{type:"text/plain;charset=utf-8"});Uu.saveAs(u,`${a.displayName??a.name}.gff3`)}(t),e()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[i.jsx(s.DialogContentText,{children:"Select assembly"}),i.jsx(s.Select,{labelId:"label",value:a?.name??"",onChange:function(e){const t=p.find((t=>t.name===e.target.value));l(t)},disabled:0===p.length,children:p.map((e=>i.jsx(s.MenuItem,{value:e.name,children:e.displayName??e.name},e.name)))}),i.jsx(s.DialogContentText,{children:"Select assembly to export to 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out",handleClose:e,maxWidth:!1,"data-testid":"log-out",children:[i.jsxs("form",{onSubmit:function(e){e.preventDefault(),o(""),l.removeToken(),globalThis.location.reload()},children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column"},children:[a.length>1?i.jsxs(i.Fragment,{children:[i.jsx(s.DialogContentText,{children:"Select account"}),i.jsx(s.Select,{value:l.internetAccountId,onChange:function(e){const t=a.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID "${e.target.value}"`);d(t)},children:n.map((e=>i.jsx(s.MenuItem,{value:e.internetAccountId,children:e.name},e.id)))})]}):null,i.jsx(s.DialogContentText,{children:"Are you sure you want to log out?"})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{disabled:!l,variant:"contained",type:"submit",children:"Log 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md(e){const{classes:t}=hd();return i.jsx(s.Button,{className:t.loginButton,variant:"outlined",startIcon:i.jsx(dd,{fontSize:"small"}),...e,children:"Continue as Guest"})}const yd=Ec()((e=>({divider:{marginTop:e.spacing(4),marginBottom:e.spacing(5)}}))),_d=({baseURL:e,handleClose:t,name:n})=>{const{classes:r}=yd(),[o,a]=u.useState(""),[c,l]=u.useState([]);function d(e){t("google"===e?"google":"microsoft"===e?"microsoft":"guest")}u.useEffect((()=>{const t=new AbortController,{signal:n}=t;return async function(){const t=new URL("auth/types",e).href,r=await fetch(t,{method:"GET",signal:n});if(!r.ok){const e=await ll(r,"Error when retrieving auth types from server");return void a(e)}const o=await r.json();l(o)}().catch((e=>{Hl(e)||a(String(e))})),()=>{t.abort(new DOMException("Error retrieving valid authentication types","AbortError"))}}),[e]);const A=c.includes("google"),f=c.includes("microsoft"),h=c.includes("guest");return i.jsxs(Al,{open:!0,title:`Log in to ${n}`,handleClose:t,maxWidth:!1,"data-testid":"login-apollo",children:[i.jsxs(s.DialogContent,{style:{display:"flex",flexDirection:"column",paddingTop:8},children:[A?i.jsx(gd,{disabled:!A,onClick:()=>{d("google")}}):null,f?i.jsx(pd,{disabled:!f,onClick:()=>{d("microsoft")}}):null,h?i.jsxs(i.Fragment,{children:[i.jsx(s.Divider,{className:r.divider}),i.jsx(md,{onClick:()=>{d("guest")}})]}):null]}),i.jsx(s.DialogActions,{children:i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:()=>{t()},children:"Cancel"})}),o?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:o})}):null]})},vd="undefined"==typeof sessionStorage,bd=e=>r.InternetAccount.named("ApolloInternetAccount").props({type:c.types.literal("ApolloInternetAccount"),configuration:n.ConfigurationReference(e)}).views((e=>({get baseURL(){return n.getConf(e,"baseURL")},getUserId(){const t=e.retrieveToken();if(t)return bo(t).id}}))).volatile((()=>({role:void 0,controller:new AbortController}))).actions((e=>({setRole(){const t=e.retrieveToken();if(!t)return void(e.role=void 0);const n=bo(t),{role:r}=n;e.role!==r&&(e.role=r)}}))).actions((e=>{let t;return{addMessageChannel(e,n){t=t=>{this.finishOAuthWindow(t,e,n)},window.addEventListener("message",t)},deleteMessageChannel(){window.removeEventListener("message",t)},finishOAuthWindow(t,n,r){if(t.data.name!==`JBrowseAuthWindow-${e.internetAccountId}`)return;const o=t.data.redirectUri.replace("#","?"),i=new URL(o),a=new URLSearchParams(i.search).get("access_token");this.deleteMessageChannel(),a?(e.storeToken(a),e.setRole(),n(a)):r(new Error("Error with token endpoint"))},async openAuthWindow(t,n,r){const i=o.isElectron?"http://localhost/auth":globalThis.location.origin+globalThis.location.pathname,a=new URL("auth/login",e.baseURL),s=new URLSearchParams({type:t,redirect_uri:i});a.search=s.toString();const c=`JBrowseAuthWindow-${e.internetAccountId}`;if(o.isElectron){const{ipcRenderer:t}=globalThis.require("electron"),o=await t.invoke("openAuthWindow",{internetAccountId:e.internetAccountId,data:{redirect_uri:i},url:a.toString()}),s=new MessageEvent("message",{data:{name:c,redirectUri:o}});this.finishOAuthWindow(s,n,r)}else this.addMessageChannel(n,r),window.open(a,c,"width=500,height=600")}}})).actions((e=>({async getTokenFromUser(t,n){const{baseURL:r}=e,o=await new Promise(((t,n)=>{const{session:r}=c.getRoot(e),{baseURL:o,name:i}=e;r.queueDialog((e=>[_d,{name:i,handleClose:r=>{r?r instanceof Error?n(r):t(r):n(new Error("user cancelled entry")),e()},baseURL:o}]))}));if("guest"!==o)return void e.openAuthWindow(o,t,n);const i=new URL("auth/login",r),a=new URLSearchParams({type:o});i.search=a.toString();const s=i.toString(),l=await fetch(s,{signal:e.controller.signal});if(!l.ok){const e=await ll(l,"Error when logging in");return void n(new Error(e))}const{token:u}=await l.json();t(u)}}))).volatile((()=>({lastChangeSequenceNumber:void 0}))).actions((e=>({setLastChangeSequenceNumber(t){e.lastChangeSequenceNumber=t}}))).actions((e=>({updateLastChangeSequenceNumber:c.flow((function*(){const{baseURL:t}=e,n=new URL("changes",t),r=new URLSearchParams({limit:"1"});n.search=r.toString();const o=n.toString(),i=e.getFetcher({locationType:"UriLocation",uri:o});let a;try{a=yield i(o,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!a.ok){const e=yield ll(a,"Error when fetching server LastChangeSequence");throw new Error(e)}const s=yield a.json();e.setLastChangeSequenceNumber(s.length>0?s[0].sequence:0)})),getMissingChanges:c.flow((function*(){const{session:t}=c.getRoot(e),{changeManager:n}=t.apolloDataStore;if(!e.lastChangeSequenceNumber)throw new Error("No LastChangeSequence stored in session. Please, refresh you browser to get last updates from server");const{baseURL:r,lastChangeSequenceNumber:o}=e,i=new URL("changes",r),a=new URLSearchParams({since:String(o),sort:"1"});i.search=a.toString();const s=i.toString(),l=e.getFetcher({locationType:"UriLocation",uri:s});let u;try{u=yield l(s,{method:"GET",signal:e.controller.signal})}catch(t){return void(e.controller.signal.aborted||console.error(t))}if(!u.ok)return void console.error(`Error when fetching the last updates to recover socket connection — ${u.status}`);const d=yield u.json();for(const e of d){const t=oe.fromJSON(e);n.submit(t,{submitToBackend:!1})}}))}))).volatile((e=>{const{origin:t,pathname:n}=new URL("socket.io/",e.baseURL);return{socket:fa(t,{path:n})}})).actions((e=>({addSocketListeners(){const{session:t}=c.getRoot(e),{notify:n}=t,r=e.retrieveToken();if(!r)throw new Error("No Token found");const o=vo(bo(r)),{socket:i}=e,{addCheckResult:a,changeManager:s,deleteCheckResult:l}=t.apolloDataStore;i.on("connect",(()=>{e.getMissingChanges()})),i.on("connect_error",(e=>{console.error(e),n("Could not connect to the Apollo server.","error")})),i.on("COMMON",(e=>{if("checkResult"in e)return void(e.deleted?l(e.checkResult._id.toString()):a(e.checkResult));if(sessionStorage.setItem("LastChangeSequence",String(e.changeSequence)),e.userSessionId===o)return;const t=oe.fromJSON(e.changeInfo);s.submit(t,{submitToBackend:!1})})),i.on("USER_LOCATION",(e=>{const{channel:n,locations:r,userName:i,userSessionId:a}=e;"USER_LOCATION"===n&&a!==o&&t.addOrUpdateCollaborator({name:i,id:a,locations:r})})),i.on("REQUEST_INFORMATION",(e=>{const{channel:n,userSessionId:o}=e;"REQUEST_INFORMATION"===n&&o!==r&&t.broadcastLocations()}))}}))).actions((e=>({postUserLocation:(t=>{let n;return t=>{clearTimeout(n),n=setTimeout((()=>{!async function(t){if(!c.isAlive(e)||"none"===e.role)return;const{baseURL:n,controller:r}=e,o=new URL("users/userLocation",n).href,i=new URLSearchParams(JSON.stringify(t)),a=e.getFetcher({locationType:"UriLocation",uri:o});try{if(!(await a(o,{method:"POST",body:i,signal:r.signal})).ok)throw new Error("ignore")}catch{console.error("Broadcasting user location failed")}}(t)}),300)}})()}))).volatile((()=>({roleNotificationSent:!1}))).actions((e=>{function t(){e.postUserLocation([])}function n(){if("hidden"===document.visibilityState&&e.postUserLocation([]),"visible"===document.visibilityState){const{session:t}=c.getRoot(e);t.broadcastLocations()}}return{initialize:c.flow((function*(r){if("none"===r){if(!e.roleNotificationSent){const{session:t}=c.getRoot(e);t.notify("You have registered as an Apollo user but have not been given access. Ask your administrator to enable access for your account.","warning"),e.roleNotificationSent=!0}return}if("admin"===r){const t=c.getRoot(e);o.isAbstractMenuManager(t)&&function(e){e.appendToMenu("Apollo",{label:"Admin",type:"subMenu",icon:ha,subMenu:[{label:"Add Assembly",icon:Uo,onClick:e=>{e.queueDialog((t=>[pl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Delete Assembly",icon:ga,onClick:e=>{e.queueDialog((t=>[Lu,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Import Features",icon:pa,onClick:e=>{e.queueDialog((t=>[Hu,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add reference sequence aliases",onClick:e=>{e.queueDialog((t=>[id,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Add Assembly aliases",onClick:e=>{e.queueDialog((t=>[yl,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Users",icon:ma,onClick:e=>{e.queueDialog((t=>[Ku,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}},{label:"Manage Checks",icon:ya,onClick:e=>{e.queueDialog((t=>[zu,{session:e,handleClose:()=>{t()}}]))}}]})}(t)}yield e.updateLastChangeSequenceNumber(),e.addSocketListeners();const{baseURL:i}=e,a=new URL("users/locations",i).href,s=e.getFetcher({locationType:"UriLocation",uri:a});yield s(a,{method:"GET",signal:e.controller.signal}),window.addEventListener("beforeunload",t),document.addEventListener("visibilitychange",n)})),removeBeforeUnloadListener(){window.removeEventListener("beforeunload",t)},removeVisibilityChangeListener(){document.removeEventListener("visibilitychange",n)}}})).actions((e=>({afterAttach(){e.setRole(),l.autorun((async t=>{if(vd)return;const{session:n}=c.getRoot(e);if(n&&e.role)try{await e.initialize(e.role),t.dispose()}catch{}}),{name:"ApolloInternetAccount"})},beforeDestroy(){e.removeBeforeUnloadListener(),e.removeVisibilityChangeListener(),e.controller.abort(new DOMException("Cleaning up Apollo connection","AbortError")),e.socket.close()}}))),Cd="undefined"==typeof sessionStorage;class Id extends y.BaseAdapter{refNameAliases;async getRefNameAliases(){const e=n.readConfObject(this.config,"assemblyId");if(!Cd){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");return await n.getRefNameAliases(e)}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n(new Error("timeout"))}),2e4),o=Zu(),i=e=>{const n=e.data;(function(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo&&"refNameAliases"in e})(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.refNameAliases))};addEventListener("message",i),rpcServer.emit("apollo",{apollo:!0,method:"getRefNameAliases",assembly:e,messageId:o})}));return this.refNameAliases=t,t}freeResources(){}}var wd=n.ConfigurationSchema("ApolloRefNameAliasAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0});function Ed(e){return"uniqueId"in e&&"object"!==X(e.data)}var xd=function(){function e(t){var n=this;N(this,e),T(this,"data",void 0),T(this,"subfeatures",void 0),T(this,"parentHandle",void 0),T(this,"uniqueId",void 0),Ed(t)?this.data=t:(this.data=t.data,this.parentHandle=t.parent);var r,o=Ed(t)?t.uniqueId:t.id;if(null==o)throw new Error("SimpleFeature requires a unique `id` or `data.uniqueId` attribute");if(this.uniqueId=String(o),!(this.data.aliases||this.data.end-this.data.start>=0))throw new Error("invalid feature data, end less than start. end: ".concat(this.data.end," start: ").concat(this.data.start));this.data.subfeatures&&(this.subfeatures=null===(r=this.data.subfeatures)||void 0===r?void 0:r.map((function(t,r){return"function"!=typeof t.get?new e({id:t.uniqueId||"".concat(o,"-").concat(r),data:q({strand:n.data.strand},t),parent:n}):t})))}return D(e,[{key:"get",value:function(e){return"subfeatures"===e?this.subfeatures:"parent"===e?this.parent():this.data[e]}},{key:"set",value:function(e,t){this.data[e]=t}},{key:"tags",value:function(){return Object.keys(this.data)}},{key:"id",value:function(){return this.uniqueId}},{key:"parent",value:function(){return this.parentHandle}},{key:"children",value:function(){return this.get("subfeatures")}},{key:"toJSON",value:function(){var e=q(q({},this.data),{},{uniqueId:this.id()}),t=this.parent();t&&(e.parentId=t.id());var n=this.children();return n&&(e.subfeatures=n.map((function(e){return e.toJSON()}))),e}}],[{key:"fromJSON",value:function(t){return new e(q({},t))}}])}();function Sd(e){return"object"==typeof e&&null!==e&&"apollo"in e&&!0===e.apollo}const Bd="undefined"==typeof sessionStorage;class kd extends y.BaseSequenceAdapter{regions;async getRefNames(){return(await this.getRegions()).map((e=>e.refName))}async getRegions(){if(this.regions)return this.regions;const e=n.readConfObject(this.config,"assemblyId");if(!Bd){const t=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!t)throw new Error("No Apollo data store found");const n=t.getBackendDriver(e);if(!n)throw new Error("No backend driver found");const r=await n.getRegions(e);return this.regions=r,r}const t=await new Promise(((t,n)=>{const r=setTimeout((()=>{n("timeout")}),2e4),o=Zu(),i=e=>{const{data:n}=e;Sd(n)&&n.messageId===o&&(clearTimeout(r),removeEventListener("message",i),t(n.regions))};addEventListener("message",i),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getRegions",assembly:e,messageId:o})}));return this.regions=t,t}getFeatures(e){const{end:t,refName:r,start:o}=e,i=n.readConfObject(this.config,"assemblyId"),a={...e,assemblyName:i};return _.ObservableCreate((async e=>{if(!Bd){const n=this.pluginManager?.rootModel?.session?.apolloDataStore;if(!n)return void e.error("No Apollo data store found");const s=n.getBackendDriver(i);if(!s)return void e.error("No backend driver found");const c=(await s.getRegions(a.assemblyName)).find((e=>e.refName===a.refName));if(!c)return void e.error("Cannot get region");a.end>c.end&&(a.end=c.end);const{seq:l}=await s.getSequence(a);return e.next(new xd({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:l}})),void e.complete()}const n=await new Promise(((e,t)=>{const n=setTimeout((()=>{t("timeout")}),2e4),r=Zu(),o=t=>{const{data:i}=t;Sd(i)&&i.messageId===r&&(clearTimeout(n),removeEventListener("message",o),e(i.sequence))};addEventListener("message",o),globalThis.rpcServer.emit("apollo",{apollo:!0,method:"getSequence",region:a,messageId:r})}));e.next(new xd({id:`${r} ${o}-${t}`,data:{refName:r,start:o,end:t,seq:n}})),e.complete()}))}freeResources(){}}var Qd=n.ConfigurationSchema("ApolloSequenceAdapter",{assemblyId:{type:"string",defaultValue:""}},{explicitlyTyped:!0}),Nd=function(){return D((function e(t){N(this,e),T(this,"label",void 0),T(this,"renderingComponent",void 0),T(this,"displayString",void 0),T(this,"matchedAttribute",void 0),T(this,"matchedObject",void 0),T(this,"textSearchAdapter",void 0),T(this,"relevance",void 0),T(this,"trackId",void 0),T(this,"score",void 0),T(this,"locString",void 0),T(this,"results",void 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i.named("LinearApolloDisplayLayouts").props({cleanupBoundary:2e5}).volatile((()=>({seenFeatures:l.observable.map()}))).views((e=>({getAnnotationFeatureById:t=>e.seenFeatures.get(t),getGlyph(e){const{topLevelFeature:t}=e;return t.looksLikeGene?If:t.children?.size?jf:af}}))).actions((e=>({addSeenFeature(t){e.seenFeatures.set(t._id,t)},deleteSeenFeature(t){e.seenFeatures.delete(t)}}))).views((e=>({get featureLayouts(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map((n=>{const r=t.get(n.assemblyName),i=new Map,a=new Map,{end:s,refName:l,start:u}=n;for(const[t,n]of e.seenFeatures.entries()){if(!c.isAlive(n)){e.deleteSeenFeature(t);continue}if(l!==r?.getCanonicalRefName(n.refSeq)||!o.doesIntersect2(u,s,n.min,n.max)||e.filteredFeatureTypes.length>0&&!e.filteredFeatureTypes.includes(n.type))continue;const{featureTypeOntology:d}=e.session.apolloDataStore.ontologyManager;if(!d)throw new Error("featureTypeOntology is undefined");const A=e.getGlyph(n).getRowCount(n,d,e.lgv.bpPerPx);let f=0,h=!1;for(;!h;){let e=Uf(f,A,a);if(e.length<A){for(let t=0;t<A-e.length;t++){const e=a.size;a.set(e,[]),i.set(e,[])}e=Uf(f,A,a)}if(Gf(e,n)){for(let e=f;e<f+A;e++){a.get(e)?.push([n.min,n.max]);const t=i.get(e);t?.push([e-f,n._id])}h=!0}else f+=1}}return i}))},getFeatureLayoutPosition(t){const{featureLayouts:n}=this,{featureTypeOntology:r}=e.session.apolloDataStore.ontologyManager;for(const[o,i]of n.entries())for(const[n,a]of i)for(const[i,s]of a){if(0!==i)continue;const a=e.getAnnotationFeatureById(s);if(a){if(t._id===a._id)return{layoutIndex:o,layoutRow:n,featureRow:i};if(a.hasDescendant(t._id)){if(!r)throw new Error("featureTypeOntology is undefined");const i=e.getGlyph(a).getRowForFeature(a,t,r);if(void 0!==i)return{layoutIndex:o,layoutRow:n,featureRow:i}}}}}}))).views((e=>({get highestRow(){return Math.max(0,...e.featureLayouts.map((e=>Math.max(...e.keys()))))}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(e.lgv.initialized&&!e.regionCannotBeRendered()){for(const[t,n]of e.seenFeatures.entries()){let r=!1;for(const t of e.regions)if(o.doesIntersect2(t.start-e.cleanupBoundary,t.end+e.cleanupBoundary,n.min,n.max)){r=!0;break}r||e.deleteSeenFeature(t)}for(const t of e.regions){const n=e.session.apolloDataStore.assemblies.get(t.assemblyName),r=n?.getByRefName(t.refName),i=r?.features;if(i)for(const[,n]of 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featuresHeight(){return(e.highestRow+1)*e.apolloRowHeight+e.lastRowTooltipBufferHeight}}))).actions((e=>({toggleShown(){e.isShown=!e.isShown},setDetailsHeight(t){e.detailsHeight=e.isShown?Math.max(Math.min(t,e.height-100),Math.min(e.height,e.detailsMinHeight)):t},setCanvas(t){e.canvas=t},setOverlayCanvas(t){e.overlayCanvas=t},setCollaboratorCanvas(t){e.collaboratorCanvas=t},setTheme(t){e.theme=t}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.collaboratorCanvas?.getContext("2d");if(t){t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);for(const n of e.session.collaborators){const{locations:r}=n;if(0===r.length)continue;let o=0;for(const i of e.lgv.displayedRegions){for(const a of r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:c}=a,l=e.lgv.bpToPx({refName:s,coord:c,regionNumber:o});if(!l)continue;const u=l.offsetPx-e.lgv.offsetPx,d=(r-c)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,d,100),t.fillStyle="black",t.fillText(n.name,u+1,11,d-2)}o++}}}}),{name:"LinearApolloDisplayRenderCollaborators"})),c.addDisposer(e,l.autorun((()=>{const{canvas:t,featureLayouts:n,featuresHeight:r,lgv:i}=e;if(!i.initialized||e.regionCannotBeRendered())return;const{displayedRegions:a,dynamicBlocks:s}=i,c=t?.getContext("2d");if(c){c.clearRect(0,0,s.totalWidthPx,r);for(const[t,r]of n.entries()){const n=a[t];for(const[i,a]of r.entries())for(const[r,s]of a){const a=e.getAnnotationFeatureById(s);r>0||!a||o.doesIntersect2(n.start,n.end,a.min,a.max)&&e.getGlyph(a).draw(c,a,i,e,t)}}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=cl(t,e.lgv),{bp:r,regionNumber:o,y:i}=n,a=Math.floor(i/e.apolloRowHeight),s=e.featureLayouts[o].get(a);if(!s)return 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n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);sl(n)?e.getGlyph(n.feature).onMouseMove(e,n,t):(e.setHoveredFeature(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setHoveredFeature();const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);sl(n)?e.getGlyph(n.feature).onMouseUp(e,n,t):e.setSelectedFeature(),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,hoveredFeature:r}=e;if(!r)return;const 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i.named("LinearApolloReferenceSequenceDisplayRendering").volatile((()=>({seqTrackCanvas:null,seqTrackOverlayCanvas:null,theme:s.createTheme()}))).actions((e=>({setSeqTrackCanvas(t){e.seqTrackCanvas=t},setSeqTrackOverlayCanvas(t){e.seqTrackOverlayCanvas=t},setTheme(t){e.theme=t},afterAttach(){c.addDisposer(e,l.autorun((()=>{const{lgv:t,seqTrackCanvas:n,theme:r,highContrast:i,showStartCodons:a,showStopCodons:s,sequenceRowHeight:c,session:l}=e;if(!t.initialized||e.regionCannotBeRendered()||!n)return;if(3/t.bpPerPx<1)return;const{bpPerPx:u,offsetPx:d,dynamicBlocks:A}=t;!function(e,t,n,r,i,a,s,c,l,u){const d=e.getContext("2d");if(!d)return;d.clearRect(0,0,e.width,e.height);const{apolloDataStore:A}=u;for(const e of i.contentBlocks){const i=e.offsetPx-r;eh(d,n,t,a,i,e.widthPx,l,e.reversed);const u=A.assemblies.get(e.assemblyName),f=u?.getByRefName(e.refName),h=Math.floor(e.start),g=Math.ceil(e.end);let p=f?.getSequence(h,g);if(!p)return;p=p.toUpperCase(),e.reversed&&(p=o.revcom(p));const 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n=e.session;e.session.queueDialog((r=>[Mf,{session:n,handleClose:()=>{r()},featureTypes:c.getSnapshot(t),onUpdate:t=>{e.updateFilteredFeatureTypes(t)}}]))}}]}}})).actions((e=>({setSelectedFeature(t){e.session.apolloSetSelectedFeature(t)},setHoveredFeature(t){e.session.apolloSetHoveredFeature(t)},showFeatureDetailsWidget(t,n){const[r]=e.regions,{assemblyName:o,refName:i}=r,a=e.getAssemblyId(o);if(!a)return;const{session:s}=e,{changeManager:c}=s.apolloDataStore,[l,u]=n??["ApolloFeatureDetailsWidget","apolloFeatureDetailsWidget"],d=s.addWidget(l,u,{feature:t,assembly:a,refName:i,changeManager:c});s.showWidget(d)},afterAttach(){c.addDisposer(e,l.autorun((()=>{e.lgv.initialized&&!e.regionCannotBeRendered()&&(e.session.apolloDataStore.loadFeatures(e.regions),e.lgv.bpPerPx<=e.zoomThreshold&&e.session.apolloDataStore.loadRefSeq(e.regions))}),{name:"LinearApolloSixFrameDisplayLoadFeatures",delay:1e3}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayLayouts").props({featuresMinMaxLimit:5e5}).volatile((()=>({seenFeatures:l.observable.map()}))).views((e=>({get featuresMinMax(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map((n=>{const r=t.get(n.assemblyName);let i,a;const{end:s,refName:c,start:l}=n;for(const[,t]of e.seenFeatures)c!==r?.getCanonicalRefName(t.refSeq)||!o.doesIntersect2(l,s,t.min,t.max)||t.length>e.featuresMinMaxLimit||(void 0===i&&({min:i}=t),void 0===a&&({max:a}=t),t.minWithChildren<i&&({min:i}=t),t.maxWithChildren>a&&({max:a}=t));if(void 0!==i&&void 0!==a)return[i,a]}))},getGlyph:e=>hh,featureLabelSpacer:t=>e.showFeatureLabels?2*t-1:t}))).actions((e=>({addSeenFeature(t){e.seenFeatures.set(t._id,t)},deleteSeenFeature(t){e.seenFeatures.delete(t)}}))).views((e=>({get geneTrackRowNums(){return[4,5].map((t=>e.featureLabelSpacer(t)))}}))).views((e=>({get featureLayouts(){const{assemblyManager:t}=e.session;return e.lgv.displayedRegions.map(((n,r)=>{const i=t.get(n.assemblyName),a=new Map;if(!e.featuresMinMax[r])return a;const{end:s,refName:l,start:u}=n;for(const[t,n]of e.seenFeatures.entries()){if(!c.isAlive(n)){e.deleteSeenFeature(t);continue}if(l!==i?.getCanonicalRefName(n.refSeq)||!o.doesIntersect2(u,s,n.min,n.max))continue;const{featureTypeOntology:r}=e.session.apolloDataStore.ontologyManager;if(!r)throw new Error("featureTypeOntology is undefined");if(n.looksLikeGene){const t=1==n.strand?e.geneTrackRowNums[0]:e.geneTrackRowNums[1];a.get(t)||a.set(t,[]);const i=a.get(t);i?.push({rowNum:t,feature:n});const{children:s}=n;if(!s)continue;for(const[,t]of s)if(r.isTypeOf(t.type,"transcript")){const{cdsLocations:n,strand:i,children:s}=t;if(s)for(const[,t]of s){if(!r.isTypeOf(t.type,"exon"))continue;const n=1==t.strand?e.geneTrackRowNums[0]:e.geneTrackRowNums[1],o=a.get(n);o?.push({rowNum:n,feature:t})}for(const r of n)for(const n of r){const r=o.getFrame(n.min,n.max,i??1,n.phase),s=(e.showFeatureLabels?[0,5,3,1,15,13,11]:[0,2,1,0,8,7,6]).at(r);if(!s)continue;a.get(s)||a.set(s,[]);const c=a.get(s);c?.push({rowNum:s,feature:t})}}}}return a}))},getFeatureLayoutPosition(e){const{featureLayouts:t}=this;for(const[n,r]of t.entries())for(const[,t]of r)for(const{feature:r}of t)if(e._id===r._id)return{layoutIndex:n,layoutRow:0,featureRow:0}}}))).views((e=>({get highestRow(){return 5}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(e.lgv.initialized&&!e.regionCannotBeRendered())for(const t of e.regions){const n=e.session.apolloDataStore.assemblies.get(t.assemblyName),r=n?.getByRefName(t.refName),i=r?.features;if(i)for(const[,n]of i)o.doesIntersect2(t.start,t.end,n.min,n.max)&&!e.seenFeatures.has(n._id)&&e.addSeenFeature(n)}}),{name:"LinearApolloSixFrameDisplaySetSeenFeatures",delay:1e3}))}})))}(0,t).named("LinearApolloSixFrameDisplayRendering").props({apolloRowHeight:20,detailsMinHeight:200,detailsHeight:200,lastRowTooltipBufferHeight:120,isShown:!0,filteredTranscripts:c.types.array(c.types.string)}).volatile((()=>({canvas:null,overlayCanvas:null,collaboratorCanvas:null,theme:s.createTheme()}))).views((e=>({get featuresHeight(){return(e.highestRow+1)*e.apolloRowHeight*(e.showFeatureLabels?2:1)+e.lastRowTooltipBufferHeight}}))).actions((e=>({toggleShown(){e.isShown=!e.isShown},setDetailsHeight(t){e.detailsHeight=e.isShown?Math.max(Math.min(t,e.height-100),Math.min(e.height,e.detailsMinHeight)):t},setCanvas(t){e.canvas=t},setOverlayCanvas(t){e.overlayCanvas=t},setCollaboratorCanvas(t){e.collaboratorCanvas=t},setTheme(t){e.theme=t}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.collaboratorCanvas?.getContext("2d");if(t){t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);for(const n of e.session.collaborators){const{locations:r}=n;if(0===r.length)continue;let o=0;for(const i of e.lgv.displayedRegions){for(const a of r){if(a.refSeq!==i.refName)continue;const{end:r,refSeq:s,start:c}=a,l=e.lgv.bpToPx({refName:s,coord:c,regionNumber:o});if(!l)continue;const u=l.offsetPx-e.lgv.offsetPx,d=(r-c)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,d,100),t.fillStyle="black",t.fillText(n.name,u+1,11,d-2)}o++}}}}),{name:"LinearApolloSixFrameDisplayRenderCollaborators"})),c.addDisposer(e,l.autorun((()=>{const{apolloRowHeight:t,canvas:n,featureLayouts:r,featuresHeight:i,lgv:a,session:s,theme:c,showFeatureLabels:l,showStartCodons:u,showStopCodons:d}=e;if(!a.initialized||e.regionCannotBeRendered())return;const{bpPerPx:A,offsetPx:f,displayedRegions:h,dynamicBlocks:g}=a,p=n?.getContext("2d");if(p){p.clearRect(0,0,g.totalWidthPx,i);for(const[t,n]of r.entries()){const r=h[t];for(const[i,a]of n.entries())for(const{feature:n}of a){if(!n.looksLikeGene)continue;if(!o.doesIntersect2(r.start,r.end,n.min,n.max))continue;const{topLevelFeature:a}=n,s=e.getGlyph(a);void 0!==s&&s.draw(p,a,i,e,t)}}if(u||d){const{apolloDataStore:e}=s;for(const n of g.contentBlocks){const r=e.assemblies.get(n.assemblyName),o=r?.getByRefName(n.refName),i=Math.floor(n.start),a=Math.ceil(n.end);let s=o?.getSequence(i,a);if(!s)break;s=s.toUpperCase();const h=Math.round(n.offsetPx-f-(n.start-i)/A);for(let e=0;e<s.length;e++){const n=i+e;gh(p,s.slice(e,e+3),h,e,c,!0,A,n,t,l,u,d)}}}}}),{name:"LinearApolloSixFrameDisplayRenderFeatures"}))}})))}(0,t);return i.named("LinearApolloSixFrameDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0}))).views((e=>({getMousePosition(t){const n=cl(t,e.lgv),{bp:r,regionNumber:i,y:a}=n,s=Math.floor(a/e.apolloRowHeight)+1,c=e.featureLayouts[i].get(s);if(!c)return n;const{featureTypeOntology:l}=e.session.apolloDataStore.ontologyManager;if(!l)throw new Error("featureTypeOntology is undefined");let u;if(e.geneTrackRowNums.includes(s)?(u=c.find((e=>"exon"==e.feature.type&&r>=e.feature.min&&r<=e.feature.max)),u||(u=c.find((e=>r>=e.feature.min&&r<=e.feature.max)))):u=c.find((t=>{const{feature:n}=t,i=n.attributes.get("gff_id")?.toString();if(!l.isTypeOf(n.type,"transcript"))return!1;for(const t of n.cdsLocations)for(const a of t){const t=o.getFrame(a.min,a.max,n.strand??1,a.phase),c=(e.showFeatureLabels?[0,5,3,1,15,13,11]:[0,2,1,0,8,7,6]).at(t);if(s===c&&r>=a.min&&r<=a.max)return void 0===i||!e.filteredTranscripts.includes(i)}return!1})),!u)return n;const{feature:d}=u;return{...n,feature:d}}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() called with no current drag in progress");n.stopPropagation(),e.apolloDragging={...e.apolloDragging,current:t}},setDragging(t){e.apolloDragging=t??null}}))).actions((e=>({setCursor(t){e.cursor!==t&&(e.cursor=t)},updateFilteredTranscripts(t){e.filteredTranscripts=c.cast(t)}}))).actions((()=>({onClick(){}})))}(0,t).views((e=>({contextMenuItems(t){const{hoveredFeature:n}=e;if(!n)return[];const r=e.getMousePosition(t),{topLevelFeature:o}=n.feature,i=e.getGlyph(o);return sl(r)?i.getContextMenuItems(e,r):[]}}))).actions((e=>({startDrag(t,n,r,o=!1){e.apolloDragging={start:t,current:t,feature:n,edge:r,shrinkParent:o}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o,shrinkParent:i}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:a}=e.lgv,s=e.getAssemblyId(a[o.regionNumber].assemblyName),c=al(r,t.bp,n,i),l="max"===n?new qr({typeName:"LocationEndChange",changedIds:c.map((e=>e.featureId)),changes:c.map((e=>({featureId:e.featureId,oldEnd:e.oldLocation,newEnd:e.newLocation}))),assembly:s}):new Ur({typeName:"LocationStartChange",changedIds:c.map((e=>e.featureId)),changes:c.map((e=>({featureId:e.featureId,oldStart:e.oldLocation,newStart:e.newLocation}))),assembly:s});e.changeManager.submit(l),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);sl(n)?e.getGlyph(n.feature).onMouseMove(e,n,t):(e.setHoveredFeature(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setHoveredFeature();const n=e.getMousePosition(t);sl(n)&&e.getGlyph(n.feature).onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);sl(n)?e.getGlyph(n.feature).onMouseUp(e,n,t):e.setSelectedFeature(),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){c.addDisposer(e,l.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,hoveredFeature:r}=e;if(!r)return;const o=e.getGlyph(r.feature);o.drawHover(e,t),o.drawTooltip(e,t),n&&e.getGlyph(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloSixFrameDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:c.types.optional(tf,{})}).named("LinearApolloSixFrameDisplay")}const mh=n.ConfigurationSchema("ApolloPlugin",{ontologies:c.types.array(Iu),featureTypeOntologyName:{description:"Name of the feature type ontology",type:"string",defaultValue:"Sequence Ontology"},hasRole:{description:"Flag used internally by jbrowse-plugin-apollo",type:"boolean",defaultValue:!1},geneBackgroundColor:{description:"Color for feature background",type:"string",defaultValue:"jexl:geneBackgroundColor(featureType)",contextVariable:["featureType"]}}),yh=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogene")||n.isTypeOf(e.type,"pseudogenic_transcript")},_h=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"pseudogene")},vh=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogenic_transcript")};function bh(e){const{attributes:t}=e,n=["gene_name","gene_id","gene_stable_id"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}const Ch=e=>{const t=function(e){const{attributes:t}=e,n=["name","gff_name","transcript_name","gene_name"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}(e),n=function(e){const{attributes:t}=e,n=["id","gff_id","transcript_id","gene_id","gene_stable_id","stable_id"];for(const e of n){const n=t?.[e];if(n?.[0])return n[0]}return""}(e);return t?`${e.type} - ${t}`:n?`${e.type} - ${n}`:e.type};function Ih({annotationFeature:e,assembly:t,handleClose:n,refSeqId:r,session:o,region:a}){const l=o,{featureTypeOntology:d}=l.apolloDataStore.ontologyManager,A=u.useMemo((()=>Object.keys(e.children??{})),[e]),[f,h]=u.useState(!0),[g,p]=u.useState(A),[m,y]=u.useState(""),[_,v]=u.useState([]),[b,C]=u.useState(!1),[I,w]=u.useState(),E=l.apolloDataStore.assemblies.get(t.name),x=E?.refSeqs.get(r),S=x?.getFeatures(a.start,a.end),B=()=>{const e=[];for(const t of S??[])if(!(t.min>a.end||t.max<a.start)&&d?.isTypeOf(t.type,"gene")){const n=c.getSnapshot(t);e.push(n)}return e};u.useEffect((()=>{y("");const e=B();v(e),w(e[0])}),[g,f,a]);const k=async e=>{if(I)for(const n of Object.keys(e)){const r=e[n];if(r.strand=I.strand,r.children)for(const e of Object.keys(r.children))r.children[e].strand=I.strand;const o=new Nr({parentFeatureId:I._id,changedIds:[I._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:r});await R(o,n)}},Q=async n=>{const o=(new ut).toHexString(),i=Math.min(...Object.values(n).map((e=>e.min))),a=Math.max(...Object.values(n).map((e=>e.max))),s=new Nr({changedIds:[o],typeName:"AddFeatureChange",assembly:t.name,addedFeature:{_id:o,refSeq:r,min:i,max:a,strand:e.strand,type:"gene",children:n,attributes:{name:[bh(e)],gene_name:[bh(e)]}}});await R(s,o)},N=async(e,n)=>{if(!I)return;const r=[];e!==I.min&&r.push(new Ur({typeName:"LocationStartChange",changedIds:[I._id],featureId:I._id,assembly:t.name,oldStart:I.min,newStart:e})),n!==I.max&&r.push(new qr({typeName:"LocationEndChange",changedIds:[I._id],featureId:I._id,assembly:t.name,oldEnd:I.max,newEnd:n}));for(const e of r)await R(e)},R=async(e,t)=>{await l.apolloDataStore.changeManager.submit(e).then((()=>{l.apolloSetSelectedFeature(t)}))};return i.jsxs(Al,{open:!0,title:"Create Apollo Annotation",handleClose:n,fullWidth:!0,maxWidth:"sm",children:[i.jsx(s.DialogTitle,{fontSize:15,children:"Select the feature to be copied to apollo track"}),i.jsxs(s.DialogContent,{children:[i.jsxs(s.Box,{sx:{ml:3},children:[yh(e,l)&&i.jsx(s.FormControlLabel,{control:i.jsx(s.Checkbox,{size:"small",checked:f,onChange:e=>{const t=e.target.checked;h(t),p(t?A:[])}}),label:`${Ch(e)} 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(${e.min+1}..${e.max})`},e._id)))})})]}),i.jsx(s.Box,{sx:{ml:3},children:i.jsx(s.FormGroup,{children:i.jsx(s.FormControlLabel,{control:i.jsx(s.Checkbox,{checked:b,onChange:e=>{C(e.target.checked)}}),label:"Create new gene"})})})]})]}),i.jsxs(s.DialogActions,{children:[i.jsx(s.Button,{variant:"contained",type:"submit",disabled:0===g.length||!f&&g.length>0&&!I,onClick:async()=>{if(f){if(_h(e,l)&&(await(async()=>{let n;if(e.children&&g.length!==Object.values(e.children).length){const r={};for(const t of g)r[t]=e.children[t];n=new Nr({changedIds:[e._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:{...e,children:r}})}else n=new Nr({changedIds:[e._id],typeName:"AddFeatureChange",assembly:t.name,addedFeature:e});await R(n,e._id)})(),o.notify("Successfully copied selected gene and transcript(s)","success")),vh(e,l))if(I&&!b){const t={};if(t[e._id]=e,I.max<e.max||I.min>e.min){const n=Math.min(I.min,e.min),r=Math.max(I.max,e.max);await N(n,r),await k(t)}else await k(t);o.notify("Successfully copied selected transcripts to destination gene","success")}else{const t={};t[e._id]=e,await Q(t),o.notify("Successfully created a new gene with selected transcripts","success")}}else{if(!e.children)return;if(I&&!b){const t={};for(const n of g)t[n]=e.children[n];const n=Math.min(...Object.values(t).map((e=>e.min))),r=Math.max(...Object.values(t).map((e=>e.max)));if(I.min>n||I.max<r){const e=Math.min(I.min,n),o=Math.max(I.max,r);await N(e,o),await k(t)}else await k(t);o.notify("Successfully copied transcript to destination gene","success")}else{const t={};for(const n of g)t[n]=e.children[n];await Q(t),o.notify("Successfully created a new gene with selected transcript","success")}}n()},children:"Create"}),i.jsx(s.Button,{variant:"outlined",type:"submit",onClick:n,children:"Cancel"})]}),m?i.jsx(s.DialogContent,{children:i.jsx(s.DialogContentText,{color:"error",children:m})}):null]})}function wh(e){if("LinearPileupDisplay"!==e.name)return e;const{stateModel:t}=e,n=t.views((e=>({getFirstRegion:()=>o.getContainingView(e).dynamicBlocks.contentBlocks[0],getAssembly(){const t=e.getFirstRegion(),n=o.getSession(e),{assemblyManager:r}=n,{assemblyName:i}=t,a=r.get(i);if(!a)throw new Error(`Could not find assembly named ${i}`);return a},getRefSeqId(t){const n=e.getFirstRegion(),{refName:r}=n,{refNameAliases:o}=t;if(!o)throw new Error(`Could not find aliases for ${t.name}`);const i=[...Object.entries(o)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t}))),a=i.find((e=>e.name===r))?._id;if(!a)throw new Error(`Could not find refSeqId named ${r}`);return a},getAnnotationFeature(){const t=e.contextMenuFeature,n=e.getAssembly(),r=e.getRefSeqId(n),o=t.get("start"),i=t.get("end"),a=t.get("strand"),s=t.get("name"),c=function(e){const t=/(\d+)([MIDNSHPX=])/g,n=[];let r;for(;null!==(r=t.exec(e));)n.push([r[2],Number.parseInt(r[1],10)]);return n}(t.get("CIGAR"));let l,u=o;const d=[];for(const[e,t]of 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n&&(r.backendDriverType=n),e.assemblies.put(r)}}))).actions((e=>({addFeature(t,n){const r=o.getSession(e),{assemblyManager:i}=r;let a=e.assemblies.get(t);if(!a){if(!i.get(t))throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);a=e.addAssembly(t)}let s=a.refSeqs.get(n.refSeq);if(!s){const e=i.get(t);if(!e)throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);const r=e.getCanonicalRefName(n.refSeq);if(!r)throw new Error(`Could not find refSeq "${n.refSeq}" to add feature "${n._id}"`);s=a.addRefSeq(n.refSeq,r)}s.features.put(n)},deleteFeature(t){const n=e.getFeature(t);if(!n)throw new Error(`Could not find feature "${t}" to delete`);const{_id:r,parent:o}=n;o?o.deleteChild(t):c.getParentOfType(n,iA).deleteFeature(r)},deleteAssembly(t){e.assemblies.delete(t)},addCheckResult(t){e.checkResults.put(t)},addCheckResults(t){for(const n of 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"${i}"`,"AbortError")),r.abortJob(d.name)}};t.addOntology(i,a,s,{textIndexing:{indexFields:c},update:(e,t)=>{0!==t?100!==t?r.update(u,e,t):r.done(d):r.runJob(d)}})}}})))}}))).views((e=>({getBackendDriver(t){const r=o.getSession(e),{assemblyManager:i}=r,a=i.get(t);if(!a)return;const{file:s,internetAccountConfigId:c}=n.getConf(a,["sequence","metadata"]);return o.isElectron&&s?e.desktopFileDriver:c?e.collaborationServerDriver:e.inMemoryFileDriver},getInternetAccount(t,r){if(!(t??r))throw new Error("Must provide either assemblyName or internetAccountId");let i=r;if(t&&!i){const{assemblyManager:r}=o.getSession(e),a=r.get(t);if(!a)throw new Error(`No assembly found with name ${t}`);({internetAccountConfigId:i}=n.getConf(a,["sequence","metadata"]))}const{internetAccounts:a}=e,s=a.find((e=>e.internetAccountId===i));if(!s)throw new Error(`No InternetAccount found with config id ${r}`);return s}}))).actions((e=>({loadFeatures:c.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:i,refName:a}=n;let s=e.assemblies.get(i);s||(s=e.assemblies.put({_id:i,refSeqs:{}}));const[c]=r;let l=s.refSeqs.get(c.refSeq);l||(l=s.refSeqs.put({_id:c.refSeq,name:a,features:{}}));for(const e of r)l.features.has(e._id)||l.features.put(e);e.addCheckResults(o)}})),loadRefSeq:c.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:i,end:a,refName:s,start:c}=n;let l=e.assemblies.get(i);l||(l=e.assemblies.put({_id:i,refSeqs:{}}));let u=l.refSeqs.get(r);u||(u=l.refSeqs.put({_id:r,name:s,sequence:[]})),u.addSequence({start:c,stop:a,sequence:o})}}))})))}(r),a=t.props({apolloDataStore:c.types.optional(i,{typeName:"Client"}),apolloSelectedFeature:c.types.safeReference(r),jobsManager:c.types.optional(Vh,{}),isLocked:c.types.optional(c.types.boolean,!1),changeInProgress:c.types.optional(c.types.boolean,!1)}).volatile((()=>({apolloHoveredFeature:void 0,abortController:new AbortController}))).extend((()=>{const e=l.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},apolloSetHoveredFeature(t){e.apolloHoveredFeature=t},addApolloTrackConfig(t,r){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations (${n.getConf(t,"displayName")||t.name})`,assemblyNames:[t.name],textSearching:{textSearchAdapter:{type:"ApolloTextSearchAdapter",trackId:o,assemblyNames:[t.name],textSearchAdapterId:`apollo_search_${t.name}`,...r?{baseURL:{uri:r,locationType:"UriLocation"}}:{}}}})},toggleLocked(){e.isLocked=!e.isLocked},setChangeInProgress(t){e.changeInProgress=t},getPluginConfiguration(){const{jbrowse:t}=c.getRoot(e);return t.configuration.ApolloPlugin},broadcastLocations(){const{internetAccounts:t}=c.getRoot(e),n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;for(const r of t.contentBlocks){const{assemblyName:t,end:o,refName:i,start:a}=r,s=e.apolloDataStore.assemblies.get(t);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:t,refName:i,start:a,end:o})}}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({apolloSetEventualSelectedFeature:l.flow((function*(t){yield l.when((()=>Boolean(e.apolloDataStore.getFeature(t)))),e.apolloSetSelectedFeature(t)}))}))).volatile((e=>({previousSnapshot:c.getSnapshot(e)}))).actions((e=>({afterCreate(){c.applySnapshot(e,{name:e.name,id:e.id});const{internetAccounts:t,jbrowse:r,reloadPluginManagerCallback:o}=c.getRoot(e);c.addDisposer(e,l.autorun((()=>{const n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;for(const r of t.contentBlocks){const{assemblyName:t,end:o,refName:i,start:a}=r,s=e.apolloDataStore.assemblies.get(t);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:t,refName:i,start:a,end:o})}}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}),{name:"ApolloSessionBroadcastLocations"})),c.addDisposer(e,l.autorun((async i=>{if(n.readConfObject(r.configuration.ApolloPlugin,"hasRole"))return c.applySnapshot(e,e.previousSnapshot),void i.dispose();const{signal:a}=e.abortController;for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:t}=n,r=new URL("jbrowse/config.json",t).href,s=n.getFetcher({locationType:"UriLocation",uri:r});let c,l;try{c=await s(r,{signal:a})}catch(t){e.abortController.signal.aborted||console.error(t);continue}if(c.ok){try{l=await c.json()}catch(e){console.error(e);continue}l.configuration.ApolloPlugin.hasRole&&(o(l,e.previousSnapshot),i.dispose())}else{const e=await ll(c,"Failed to fetch assemblies");console.error(e)}}}),{name:"ApolloSessionLoadConfig"}))},beforeDestroy(){e.abortController.abort(new DOMException("Clean up Apollo session","AbortError"))}}))).views((e=>{const t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(r){if("ApolloTrack"===r.type||"ReferenceSequenceTrack"===r.type)return t?.(r);const o=n.readConfObject(r,"trackId");return o.endsWith("-sessionTrack")?[...t?.(r)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=c.getRoot(e);let i;i=Lr(c.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a={...c.getSnapshot(r),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Pr({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:i?.tracks&&[...i.tracks,a]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(r),n.addTrackConf(a)},icon:Wh}]:[...t?.(r)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:n}=c.getRoot(e);let i;i=Lr(c.getSnapshot(n)),0===Object.keys(i).length&&(i=void 0);const a=i?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new Pr({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:a}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(r),n.deleteTrackConf(r)},icon:Wh}]}}}));return c.types.snapshotProcessor(a,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=r.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=c.getSnapshot(t))}return e}})}const Xh="WorkerGlobalScope"in globalThis;for(const[e,t]of Object.entries(oo))ne.registerChange(e,t);const Zh=new jo;ae.registerCheck(Zh.name,Zh);const eg=new Jo;ae.registerCheck(eg.name,eg),co.registerValidation(new uo),co.registerValidation(new Ao),e.default=class extends t{name="ApolloPlugin";version="0.3.12";configurationSchema=mh;install(e){!function(e){e.addAdapterType((()=>new m({name:"ApolloSequenceAdapter",configSchema:Qd,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:kd})))}(e),function(e){e.addAdapterType((()=>new m({name:"ApolloRefNameAliasAdapter",configSchema:wd,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:Id})))}(e),function(e){e.addTextSearchAdapterType((()=>new r.TextSearchAdapterType({name:"ApolloTextSearchAdapter",displayName:"Apollo text search adapter",configSchema:Fd,AdapterClass:Dd,description:"Apollo Text Search adapter"})))}(e),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloFeatureDetailsWidget",{});return new r.WidgetType({name:"ApolloFeatureDetailsWidget",heading:"Apollo feature details",configSchema:e,stateModel:cA,ReactComponent:tA})})),e.addWidgetType((()=>{const e=n.ConfigurationSchema("ApolloTranscriptDetails",{});return new r.WidgetType({name:"ApolloTranscriptDetails",heading:"Apollo transcript details",configSchema:e,stateModel:lA,ReactComponent:jA})})),e.addTrackType((()=>{const t=n.ConfigurationSchema("ApolloTrack",{adapter:""},{baseConfiguration:r.createBaseTrackConfig(e),explicitIdentifier:"trackId"});return new r.TrackType({name:"ApolloTrack",configSchema:t,stateModel:r.createBaseTrackModel(e,"ApolloTrack",t)})})),e.addInternetAccountType((()=>new r.InternetAccountType({name:"ApolloInternetAccount",configSchema:Go,stateModel:bd(Go)}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloDisplay",configSchema:MA,stateModel:Hf(0,MA),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:Ph}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloSixFrameDisplay",configSchema:ih,stateModel:ph(0,ih),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:qh}))),e.addDisplayType((()=>new r.DisplayType({name:"LinearApolloReferenceSequenceDisplay",configSchema:Yf,stateModel:rh(0,Yf),displayName:"Apollo reference sequence display",trackType:"ReferenceSequenceTrack",viewType:"LinearGenomeView",ReactComponent:oh}))),e.addToExtensionPoint("Core-extendSession",$h.bind(this,e)),e.addToExtensionPoint("Core-extendPluggableElement",(e=>{if("LinearGenomeView"===e.name){const{stateModel:t}=e,n=t.views((e=>{const t=e.rubberBandMenuItems;return{rubberBandMenuItems:()=>[...t(),{label:"Add new feature",icon:Uo,onClick:()=>{const t=o.getSession(e),{leftOffset:n,rightOffset:r}=e,i=e.getSelectedRegions(n,r);t.queueDialog((e=>[ju,{session:t,handleClose:()=>{e()},region:i[0],changeManager:t.apolloDataStore.changeManager}]))}}]}}));e.stateModel=n}return e})),e.addToExtensionPoint("Core-extendPluggableElement",wh),e.addToExtensionPoint("Core-extendPluggableElement",Bh),e.addToExtensionPoint("LinearGenomeView-searchResultSelected",((e,t)=>{const{session:n,result:r}=t,o=r.getTrackId(),i=r.matchedObject;return o?.startsWith("apollo_track_")&&i&&n.apolloSetEventualSelectedFeature(i._id),e})),Xh||e.addToExtensionPoint("Core-extendWorker",(t=>"on"in t&&t.on?(t.on("apollo",(async n=>{if("object"!=typeof(r=n)||null===r||!("apollo"in r)||!0!==r.apollo)return;var r;const{apollo:o,messageId:i,method:a}=n;switch(a){case"getSequence":{const{region:r}=n,{assemblyName:a}=r,s=e.rootModel?.session?.apolloDataStore;if(!s)break;const c=s.getBackendDriver(a);if(!c)break;const{seq:l}=await c.getSequence(r);t.workers[0].postMessage({apollo:o,messageId:i,sequence:l});break}case"getRegions":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r);if(!s)break;const c=await s.getRegions(r);t.workers[0].postMessage({apollo:o,messageId:i,regions:c});break}case"getRefNameAliases":{const{assembly:r}=n,a=e.rootModel?.session?.apolloDataStore;if(!a)break;const s=a.getBackendDriver(r);if(!s)break;const c=await s.getRefNameAliases(r);t.workers[0].postMessage({apollo:o,messageId:i,refNameAliases:c});break}}})),t):t))}configure(e){var t;o.isAbstractMenuManager(e.rootModel)&&(e.jexl.addFunction("geneBackgroundColor",(e=>"pseudogene"===e?s.alpha("rgb(148, 203, 236)",.6):"ncRNA_gene"===e?s.alpha("rgb(194, 106, 119)",.6):void 0)),(t=e.rootModel).insertInMenu("Apollo",{label:"Redo",icon:Yh,onClick(e){const{apolloDataStore:t}=e;t.changeManager.redoLastChange()}},0),t.insertInMenu("Apollo",{label:"Undo",icon:Kh,onClick(e){const{apolloDataStore:t}=e;t.changeManager.undoLastChange()}},0),t.appendToMenu("Apollo",{label:"Download GFF3",icon:Jh,onClick:e=>{e.queueDialog((t=>[Gu,{session:e,handleClose:()=>{t()}}]))}}),t.appendToMenu("Apollo",{label:"View Change Log",icon:zh,onClick:e=>{e.queueDialog((t=>[nd,{session:e,handleClose:()=>{t()}}]))}}),t.appendToMenu("Apollo",{label:"Open local GFF3 file",icon:Gh,onClick:e=>{e.queueDialog((t=>[ed,{session:e,handleClose:()=>{t()},inMemoryFileDriver:e.apolloDataStore.inMemoryFileDriver}]))}}),t.appendToMenu("Apollo",{label:"View check results",icon:Uh,onClick:e=>{e.queueDialog((t=>[ad,{session:e,handleClose:()=>{t()}}]))}}),t.appendToMenu("Apollo",{label:"Lock/Unlock session",onClick:e=>{e.toggleLocked()}}),t.appendToMenu("Apollo",{label:"Log out",icon:Hh,onClick:e=>{e.queueDialog((t=>[Yu,{session:e,handleClose:()=>{t()}}]))}}))}},Object.defineProperty(e,"__esModule",{value:!0})}));
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