@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/index.d.ts +3 -0
- package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
- package/dist/ApolloJobModel.d.ts +53 -0
- package/dist/ApolloJobModel.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
- package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
- package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
- package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/index.d.ts +5 -0
- package/dist/BackendDrivers/index.d.ts.map +1 -0
- package/dist/ChangeManager.d.ts +24 -0
- package/dist/ChangeManager.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/index.d.ts +5 -0
- package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/model.d.ts +123 -0
- package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/index.d.ts +3 -0
- package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/types.d.ts +2 -0
- package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
- package/dist/OntologyManager/util.d.ts +4 -0
- package/dist/OntologyManager/util.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
- package/dist/TabularEditor/index.d.ts +3 -0
- package/dist/TabularEditor/index.d.ts.map +1 -0
- package/dist/TabularEditor/model.d.ts +17 -0
- package/dist/TabularEditor/model.d.ts.map +1 -0
- package/dist/TabularEditor/types.d.ts +4 -0
- package/dist/TabularEditor/types.d.ts.map +1 -0
- package/dist/components/AddAssembly.d.ts +10 -0
- package/dist/components/AddAssembly.d.ts.map +1 -0
- package/dist/components/AddAssemblyAliases.d.ts +10 -0
- package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
- package/dist/components/AddChildFeature.d.ts +13 -0
- package/dist/components/AddChildFeature.d.ts.map +1 -0
- package/dist/components/AddFeature.d.ts +12 -0
- package/dist/components/AddFeature.d.ts.map +1 -0
- package/dist/components/AddRefSeqAliases.d.ts +10 -0
- package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
- package/dist/components/CopyFeature.d.ts +13 -0
- package/dist/components/CopyFeature.d.ts.map +1 -0
- package/dist/components/CreateApolloAnnotation.d.ts +20 -0
- package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
- package/dist/components/DeleteAssembly.d.ts +10 -0
- package/dist/components/DeleteAssembly.d.ts.map +1 -0
- package/dist/components/DeleteFeature.d.ts +15 -0
- package/dist/components/DeleteFeature.d.ts.map +1 -0
- package/dist/components/Dialog.d.ts +7 -0
- package/dist/components/Dialog.d.ts.map +1 -0
- package/dist/components/DownloadGFF3.d.ts +8 -0
- package/dist/components/DownloadGFF3.d.ts.map +1 -0
- package/dist/components/DuplicateTranscript.d.ts +15 -0
- package/dist/components/DuplicateTranscript.d.ts.map +1 -0
- package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
- package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
- package/dist/components/FilterFeatures.d.ts +10 -0
- package/dist/components/FilterFeatures.d.ts.map +1 -0
- package/dist/components/FilterTranscripts.d.ts +10 -0
- package/dist/components/FilterTranscripts.d.ts.map +1 -0
- package/dist/components/ImportFeatures.d.ts +10 -0
- package/dist/components/ImportFeatures.d.ts.map +1 -0
- package/dist/components/LogOut.d.ts +8 -0
- package/dist/components/LogOut.d.ts.map +1 -0
- package/dist/components/ManageChecks.d.ts +8 -0
- package/dist/components/ManageChecks.d.ts.map +1 -0
- package/dist/components/ManageUsers.d.ts +10 -0
- package/dist/components/ManageUsers.d.ts.map +1 -0
- package/dist/components/MergeExons.d.ts +15 -0
- package/dist/components/MergeExons.d.ts.map +1 -0
- package/dist/components/MergeTranscripts.d.ts +15 -0
- package/dist/components/MergeTranscripts.d.ts.map +1 -0
- package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
- package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
- package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
- package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
- package/dist/components/OpenLocalFile.d.ts +15 -0
- package/dist/components/OpenLocalFile.d.ts.map +1 -0
- package/dist/components/SplitExon.d.ts +15 -0
- package/dist/components/SplitExon.d.ts.map +1 -0
- package/dist/components/ViewChangeLog.d.ts +8 -0
- package/dist/components/ViewChangeLog.d.ts.map +1 -0
- package/dist/components/ViewCheckResults.d.ts +8 -0
- package/dist/components/ViewCheckResults.d.ts.map +1 -0
- package/dist/components/index.d.ts +21 -0
- package/dist/components/index.d.ts.map +1 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
- package/dist/extensions/annotationFromPileup.d.ts +3 -0
- package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
- package/dist/extensions/index.d.ts +3 -0
- package/dist/extensions/index.d.ts.map +1 -0
- package/dist/index.esm.js +843 -1330
- package/dist/index.esm.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
- package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63619
- package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
- package/dist/makeDisplayComponent.d.ts +9 -0
- package/dist/makeDisplayComponent.d.ts.map +1 -0
- package/dist/menus/index.d.ts +2 -0
- package/dist/menus/index.d.ts.map +1 -0
- package/dist/menus/topLevelMenu.d.ts +3 -0
- package/dist/menus/topLevelMenu.d.ts.map +1 -0
- package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
- package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
- package/dist/session/index.d.ts +2 -0
- package/dist/session/index.d.ts.map +1 -0
- package/dist/types.d.ts +10 -0
- package/dist/types.d.ts.map +1 -0
- package/dist/util/annotationFeatureUtils.d.ts +7 -0
- package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
- package/dist/util/copyToClipboard.d.ts +2 -0
- package/dist/util/copyToClipboard.d.ts.map +1 -0
- package/dist/util/glyphUtils.d.ts +31 -0
- package/dist/util/glyphUtils.d.ts.map +1 -0
- package/dist/util/index.d.ts +10 -0
- package/dist/util/index.d.ts.map +1 -0
- package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
- package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
- package/dist/util/mouseEventsUtils.d.ts +25 -0
- package/dist/util/mouseEventsUtils.d.ts.map +1 -0
- package/package.json +48 -25
- package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
- package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
- package/src/ApolloInternetAccount/configSchema.ts +1 -1
- package/src/ApolloInternetAccount/model.ts +13 -6
- package/src/ApolloJobModel.ts +3 -3
- package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
- package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
- package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
- package/src/BackendDrivers/BackendDriver.ts +8 -8
- package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
- package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
- package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
- package/src/ChangeManager.ts +8 -3
- package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
- package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
- package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
- package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
- package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
- package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
- package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
- package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
- package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
- package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
- package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
- package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
- package/src/FeatureDetailsWidget/model.ts +3 -3
- package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
- package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
- package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
- package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
- package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
- package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
- package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
- package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
- package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
- package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
- package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
- package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
- package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
- package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
- package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
- package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
- package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
- package/src/OntologyManager/index.ts +4 -4
- package/src/OntologyManager/util.ts +1 -1
- package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
- package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
- package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
- package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
- package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
- package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
- package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
- package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
- package/src/TabularEditor/TabularEditorPane.tsx +1 -1
- package/src/TabularEditor/model.ts +2 -2
- package/src/TabularEditor/types.ts +2 -2
- package/src/components/AddAssembly.tsx +61 -42
- package/src/components/AddAssemblyAliases.tsx +5 -5
- package/src/components/AddChildFeature.tsx +3 -3
- package/src/components/AddFeature.tsx +4 -4
- package/src/components/AddRefSeqAliases.tsx +7 -7
- package/src/components/CopyFeature.tsx +8 -8
- package/src/components/CreateApolloAnnotation.tsx +5 -5
- package/src/components/DeleteAssembly.tsx +8 -8
- package/src/components/DeleteFeature.tsx +4 -4
- package/src/components/Dialog.tsx +1 -1
- package/src/components/DownloadGFF3.tsx +8 -8
- package/src/components/DuplicateTranscript.tsx +132 -0
- package/src/components/FilterFeatures.tsx +1 -1
- package/src/components/FilterTranscripts.tsx +1 -1
- package/src/components/ImportFeatures.tsx +51 -33
- package/src/components/LogOut.tsx +4 -4
- package/src/components/ManageChecks.tsx +8 -8
- package/src/components/ManageUsers.tsx +18 -26
- package/src/components/MergeExons.tsx +4 -4
- package/src/components/MergeTranscripts.tsx +4 -4
- package/src/components/OntologyTermAutocomplete.tsx +14 -4
- package/src/components/OntologyTermMultiSelect.tsx +12 -5
- package/src/components/OpenLocalFile.tsx +2 -2
- package/src/components/SplitExon.tsx +6 -6
- package/src/components/ViewChangeLog.tsx +8 -8
- package/src/components/ViewCheckResults.tsx +4 -4
- package/src/components/index.ts +1 -0
- package/src/config.ts +1 -1
- package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
- package/src/extensions/annotationFromPileup.ts +8 -6
- package/src/index.ts +25 -1
- package/src/makeDisplayComponent.tsx +8 -5
- package/src/menus/topLevelMenu.ts +4 -4
- package/src/menus/topLevelMenuAdmin.ts +4 -4
- package/src/session/ClientDataStore.ts +20 -15
- package/src/session/session.ts +30 -19
- package/src/types.ts +10 -4
- package/src/util/annotationFeatureUtils.ts +1 -1
- package/src/util/displayUtils.ts +3 -3
- package/src/util/glyphUtils.ts +10 -10
- package/src/util/index.ts +4 -4
- package/src/util/loadAssemblyIntoClient.ts +4 -4
- package/src/util/mouseEventsUtils.ts +2 -2
|
@@ -0,0 +1,656 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
3
|
+
import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
4
|
+
import type { MenuItem } from '@jbrowse/core/ui';
|
|
5
|
+
import { type Instance } from '@jbrowse/mobx-state-tree';
|
|
6
|
+
import type { CSSProperties } from 'react';
|
|
7
|
+
import { type Edge, type MousePosition, type MousePositionWithFeature } from '../../util';
|
|
8
|
+
import type { CanvasMouseEvent } from '../types';
|
|
9
|
+
export declare function mouseEventsModelIntermediateFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
|
|
10
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
11
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
12
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
13
|
+
} & {
|
|
14
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
|
|
15
|
+
configuration: AnyConfigurationSchemaType;
|
|
16
|
+
graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
17
|
+
table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
18
|
+
showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
19
|
+
zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
20
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
21
|
+
filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
22
|
+
loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
23
|
+
} & {
|
|
24
|
+
cleanupBoundary: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
25
|
+
} & {
|
|
26
|
+
apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
27
|
+
detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
28
|
+
detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
29
|
+
lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
30
|
+
isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
31
|
+
filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
32
|
+
}, {
|
|
33
|
+
rendererTypeName: string;
|
|
34
|
+
error: unknown;
|
|
35
|
+
statusMessage: string | undefined;
|
|
36
|
+
} & {
|
|
37
|
+
readonly RenderingComponent: import("react").FC<{
|
|
38
|
+
model: {
|
|
39
|
+
id: string;
|
|
40
|
+
type: string;
|
|
41
|
+
rpcDriverName: string | undefined;
|
|
42
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
43
|
+
rendererTypeName: string;
|
|
44
|
+
error: unknown;
|
|
45
|
+
statusMessage: string | undefined;
|
|
46
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
47
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
48
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
49
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
50
|
+
}, {
|
|
51
|
+
rendererTypeName: string;
|
|
52
|
+
error: unknown;
|
|
53
|
+
statusMessage: string | undefined;
|
|
54
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
55
|
+
onHorizontalScroll?: () => void;
|
|
56
|
+
blockState?: Record<string, any>;
|
|
57
|
+
}>;
|
|
58
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
59
|
+
model: {
|
|
60
|
+
id: string;
|
|
61
|
+
type: string;
|
|
62
|
+
rpcDriverName: string | undefined;
|
|
63
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
64
|
+
rendererTypeName: string;
|
|
65
|
+
error: unknown;
|
|
66
|
+
statusMessage: string | undefined;
|
|
67
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
68
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
69
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
70
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
71
|
+
}, {
|
|
72
|
+
rendererTypeName: string;
|
|
73
|
+
error: unknown;
|
|
74
|
+
statusMessage: string | undefined;
|
|
75
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
76
|
+
}> | null;
|
|
77
|
+
readonly adapterConfig: any;
|
|
78
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
79
|
+
readonly isMinimized: boolean;
|
|
80
|
+
readonly parentDisplay: any;
|
|
81
|
+
readonly effectiveRpcDriverName: any;
|
|
82
|
+
} & {
|
|
83
|
+
renderProps(): any;
|
|
84
|
+
renderingProps(): {
|
|
85
|
+
displayModel: {
|
|
86
|
+
id: string;
|
|
87
|
+
type: string;
|
|
88
|
+
rpcDriverName: string | undefined;
|
|
89
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
90
|
+
rendererTypeName: string;
|
|
91
|
+
error: unknown;
|
|
92
|
+
statusMessage: string | undefined;
|
|
93
|
+
} & {
|
|
94
|
+
readonly RenderingComponent: import("react").FC<{
|
|
95
|
+
model: {
|
|
96
|
+
id: string;
|
|
97
|
+
type: string;
|
|
98
|
+
rpcDriverName: string | undefined;
|
|
99
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
100
|
+
rendererTypeName: string;
|
|
101
|
+
error: unknown;
|
|
102
|
+
statusMessage: string | undefined;
|
|
103
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
104
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
105
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
106
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
107
|
+
}, {
|
|
108
|
+
rendererTypeName: string;
|
|
109
|
+
error: unknown;
|
|
110
|
+
statusMessage: string | undefined;
|
|
111
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
112
|
+
onHorizontalScroll?: () => void;
|
|
113
|
+
blockState?: Record<string, any>;
|
|
114
|
+
}>;
|
|
115
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
116
|
+
model: {
|
|
117
|
+
id: string;
|
|
118
|
+
type: string;
|
|
119
|
+
rpcDriverName: string | undefined;
|
|
120
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
121
|
+
rendererTypeName: string;
|
|
122
|
+
error: unknown;
|
|
123
|
+
statusMessage: string | undefined;
|
|
124
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
125
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
126
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
127
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
128
|
+
}, {
|
|
129
|
+
rendererTypeName: string;
|
|
130
|
+
error: unknown;
|
|
131
|
+
statusMessage: string | undefined;
|
|
132
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
133
|
+
}> | null;
|
|
134
|
+
readonly adapterConfig: any;
|
|
135
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
136
|
+
readonly isMinimized: boolean;
|
|
137
|
+
readonly parentDisplay: any;
|
|
138
|
+
readonly effectiveRpcDriverName: any;
|
|
139
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
140
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
141
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
142
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
143
|
+
}, {
|
|
144
|
+
rendererTypeName: string;
|
|
145
|
+
error: unknown;
|
|
146
|
+
statusMessage: string | undefined;
|
|
147
|
+
} & {
|
|
148
|
+
readonly RenderingComponent: import("react").FC<{
|
|
149
|
+
model: {
|
|
150
|
+
id: string;
|
|
151
|
+
type: string;
|
|
152
|
+
rpcDriverName: string | undefined;
|
|
153
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
154
|
+
rendererTypeName: string;
|
|
155
|
+
error: unknown;
|
|
156
|
+
statusMessage: string | undefined;
|
|
157
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
158
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
159
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
160
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
161
|
+
}, {
|
|
162
|
+
rendererTypeName: string;
|
|
163
|
+
error: unknown;
|
|
164
|
+
statusMessage: string | undefined;
|
|
165
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
166
|
+
onHorizontalScroll?: () => void;
|
|
167
|
+
blockState?: Record<string, any>;
|
|
168
|
+
}>;
|
|
169
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
170
|
+
model: {
|
|
171
|
+
id: string;
|
|
172
|
+
type: string;
|
|
173
|
+
rpcDriverName: string | undefined;
|
|
174
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
175
|
+
rendererTypeName: string;
|
|
176
|
+
error: unknown;
|
|
177
|
+
statusMessage: string | undefined;
|
|
178
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
179
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
180
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
181
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
182
|
+
}, {
|
|
183
|
+
rendererTypeName: string;
|
|
184
|
+
error: unknown;
|
|
185
|
+
statusMessage: string | undefined;
|
|
186
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
187
|
+
}> | null;
|
|
188
|
+
readonly adapterConfig: any;
|
|
189
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
190
|
+
readonly isMinimized: boolean;
|
|
191
|
+
readonly parentDisplay: any;
|
|
192
|
+
readonly effectiveRpcDriverName: any;
|
|
193
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
194
|
+
};
|
|
195
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
196
|
+
readonly DisplayMessageComponent: undefined | import("react").FC<any>;
|
|
197
|
+
trackMenuItems(): MenuItem[];
|
|
198
|
+
readonly viewMenuActions: MenuItem[];
|
|
199
|
+
regionCannotBeRendered(): null;
|
|
200
|
+
} & {
|
|
201
|
+
setStatusMessage(arg?: string): void;
|
|
202
|
+
setError(error?: unknown): void;
|
|
203
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
204
|
+
reload(): void;
|
|
205
|
+
} & {
|
|
206
|
+
renderProps(): any;
|
|
207
|
+
} & {
|
|
208
|
+
scrollTop: number;
|
|
209
|
+
} & {
|
|
210
|
+
readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
|
|
211
|
+
readonly height: number;
|
|
212
|
+
readonly loading: boolean;
|
|
213
|
+
readonly zoomThresholdSetting: number;
|
|
214
|
+
} & {
|
|
215
|
+
readonly rendererTypeName: any;
|
|
216
|
+
readonly session: import("../../session").ApolloSessionModel;
|
|
217
|
+
readonly regions: {
|
|
218
|
+
assemblyName: string;
|
|
219
|
+
refName: string;
|
|
220
|
+
start: number;
|
|
221
|
+
end: number;
|
|
222
|
+
}[];
|
|
223
|
+
regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
|
|
224
|
+
} & {
|
|
225
|
+
readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
|
|
226
|
+
readonly changeManager: import("../../ChangeManager").ChangeManager;
|
|
227
|
+
getAssemblyId(assemblyName: string): string;
|
|
228
|
+
readonly selectedFeature: AnnotationFeature | undefined;
|
|
229
|
+
readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
|
|
230
|
+
} & {
|
|
231
|
+
setScrollTop(scrollTop: number): void;
|
|
232
|
+
setHeight(displayHeight: number): number;
|
|
233
|
+
resizeHeight(distance: number): number;
|
|
234
|
+
showGraphicalOnly(): void;
|
|
235
|
+
showTableOnly(): void;
|
|
236
|
+
showGraphicalAndTable(): void;
|
|
237
|
+
toggleShowCheckResults(): void;
|
|
238
|
+
updateFilteredFeatureTypes(types: string[]): void;
|
|
239
|
+
setLoading(loading: boolean): void;
|
|
240
|
+
setZoomThresholdSetting({ zoomThreshold }: {
|
|
241
|
+
zoomThreshold: number;
|
|
242
|
+
}): void;
|
|
243
|
+
} & {
|
|
244
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
245
|
+
type: string;
|
|
246
|
+
label: string;
|
|
247
|
+
subMenu: ({
|
|
248
|
+
label: string;
|
|
249
|
+
type: string;
|
|
250
|
+
checked: boolean;
|
|
251
|
+
onClick: () => void;
|
|
252
|
+
} | {
|
|
253
|
+
label: string;
|
|
254
|
+
onClick: () => void;
|
|
255
|
+
type?: undefined;
|
|
256
|
+
checked?: undefined;
|
|
257
|
+
})[];
|
|
258
|
+
})[];
|
|
259
|
+
} & {
|
|
260
|
+
setSelectedFeature(feature?: AnnotationFeature): void;
|
|
261
|
+
setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
|
|
262
|
+
showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
|
|
263
|
+
afterAttach(): void;
|
|
264
|
+
} & {
|
|
265
|
+
seenFeatures: import("mobx").ObservableMap<string, AnnotationFeature>;
|
|
266
|
+
} & {
|
|
267
|
+
getAnnotationFeatureById(id: string): AnnotationFeature | undefined;
|
|
268
|
+
getGlyph(feature: AnnotationFeature): import("../glyphs/Glyph").Glyph;
|
|
269
|
+
} & {
|
|
270
|
+
addSeenFeature(feature: AnnotationFeature): void;
|
|
271
|
+
deleteSeenFeature(featureId: string): void;
|
|
272
|
+
} & {
|
|
273
|
+
readonly featureLayouts: Map<number, [number, string][]>[];
|
|
274
|
+
getFeatureLayoutPosition(feature: AnnotationFeature): {
|
|
275
|
+
layoutIndex: number;
|
|
276
|
+
layoutRow: number;
|
|
277
|
+
featureRow: number;
|
|
278
|
+
} | undefined;
|
|
279
|
+
} & {
|
|
280
|
+
readonly highestRow: number;
|
|
281
|
+
} & {
|
|
282
|
+
afterAttach(): void;
|
|
283
|
+
} & {
|
|
284
|
+
canvas: HTMLCanvasElement | null;
|
|
285
|
+
overlayCanvas: HTMLCanvasElement | null;
|
|
286
|
+
collaboratorCanvas: HTMLCanvasElement | null;
|
|
287
|
+
theme: import("@mui/material").Theme;
|
|
288
|
+
} & {
|
|
289
|
+
readonly featuresHeight: number;
|
|
290
|
+
} & {
|
|
291
|
+
toggleShown(): void;
|
|
292
|
+
setDetailsHeight(newHeight: number): void;
|
|
293
|
+
setCanvas(canvas: HTMLCanvasElement | null): void;
|
|
294
|
+
setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
|
|
295
|
+
setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
|
|
296
|
+
setTheme(theme: import("@mui/material").Theme): void;
|
|
297
|
+
} & {
|
|
298
|
+
afterAttach(): void;
|
|
299
|
+
} & {
|
|
300
|
+
apolloDragging: {
|
|
301
|
+
start: MousePosition;
|
|
302
|
+
current: MousePosition;
|
|
303
|
+
feature: AnnotationFeature;
|
|
304
|
+
edge: Edge;
|
|
305
|
+
shrinkParent: boolean;
|
|
306
|
+
} | null;
|
|
307
|
+
cursor: CSSProperties["cursor"] | undefined;
|
|
308
|
+
} & {
|
|
309
|
+
getMousePosition(event: React.MouseEvent): MousePosition;
|
|
310
|
+
} & {
|
|
311
|
+
continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
|
|
312
|
+
setDragging(dragInfo?: {
|
|
313
|
+
start: MousePosition;
|
|
314
|
+
current: MousePosition;
|
|
315
|
+
feature: AnnotationFeature;
|
|
316
|
+
edge: Edge;
|
|
317
|
+
shrinkParent: boolean;
|
|
318
|
+
} | null): void;
|
|
319
|
+
} & {
|
|
320
|
+
setCursor(cursor?: CSSProperties["cursor"]): void;
|
|
321
|
+
updateFilteredTranscripts(forms: string[]): void;
|
|
322
|
+
} & {
|
|
323
|
+
onClick(): void;
|
|
324
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
325
|
+
export declare function mouseEventsModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
|
|
326
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
327
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
328
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
329
|
+
} & {
|
|
330
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
|
|
331
|
+
configuration: AnyConfigurationSchemaType;
|
|
332
|
+
graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
333
|
+
table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
334
|
+
showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
335
|
+
zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
336
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
337
|
+
filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
338
|
+
loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
339
|
+
} & {
|
|
340
|
+
cleanupBoundary: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
341
|
+
} & {
|
|
342
|
+
apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
343
|
+
detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
344
|
+
detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
345
|
+
lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
346
|
+
isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
347
|
+
filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
348
|
+
}, {
|
|
349
|
+
rendererTypeName: string;
|
|
350
|
+
error: unknown;
|
|
351
|
+
statusMessage: string | undefined;
|
|
352
|
+
} & {
|
|
353
|
+
readonly RenderingComponent: import("react").FC<{
|
|
354
|
+
model: {
|
|
355
|
+
id: string;
|
|
356
|
+
type: string;
|
|
357
|
+
rpcDriverName: string | undefined;
|
|
358
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
359
|
+
rendererTypeName: string;
|
|
360
|
+
error: unknown;
|
|
361
|
+
statusMessage: string | undefined;
|
|
362
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
363
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
364
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
365
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
366
|
+
}, {
|
|
367
|
+
rendererTypeName: string;
|
|
368
|
+
error: unknown;
|
|
369
|
+
statusMessage: string | undefined;
|
|
370
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
371
|
+
onHorizontalScroll?: () => void;
|
|
372
|
+
blockState?: Record<string, any>;
|
|
373
|
+
}>;
|
|
374
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
375
|
+
model: {
|
|
376
|
+
id: string;
|
|
377
|
+
type: string;
|
|
378
|
+
rpcDriverName: string | undefined;
|
|
379
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
380
|
+
rendererTypeName: string;
|
|
381
|
+
error: unknown;
|
|
382
|
+
statusMessage: string | undefined;
|
|
383
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
384
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
385
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
386
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
387
|
+
}, {
|
|
388
|
+
rendererTypeName: string;
|
|
389
|
+
error: unknown;
|
|
390
|
+
statusMessage: string | undefined;
|
|
391
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
392
|
+
}> | null;
|
|
393
|
+
readonly adapterConfig: any;
|
|
394
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
395
|
+
readonly isMinimized: boolean;
|
|
396
|
+
readonly parentDisplay: any;
|
|
397
|
+
readonly effectiveRpcDriverName: any;
|
|
398
|
+
} & {
|
|
399
|
+
renderProps(): any;
|
|
400
|
+
renderingProps(): {
|
|
401
|
+
displayModel: {
|
|
402
|
+
id: string;
|
|
403
|
+
type: string;
|
|
404
|
+
rpcDriverName: string | undefined;
|
|
405
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
406
|
+
rendererTypeName: string;
|
|
407
|
+
error: unknown;
|
|
408
|
+
statusMessage: string | undefined;
|
|
409
|
+
} & {
|
|
410
|
+
readonly RenderingComponent: import("react").FC<{
|
|
411
|
+
model: {
|
|
412
|
+
id: string;
|
|
413
|
+
type: string;
|
|
414
|
+
rpcDriverName: string | undefined;
|
|
415
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
416
|
+
rendererTypeName: string;
|
|
417
|
+
error: unknown;
|
|
418
|
+
statusMessage: string | undefined;
|
|
419
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
420
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
421
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
422
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
423
|
+
}, {
|
|
424
|
+
rendererTypeName: string;
|
|
425
|
+
error: unknown;
|
|
426
|
+
statusMessage: string | undefined;
|
|
427
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
428
|
+
onHorizontalScroll?: () => void;
|
|
429
|
+
blockState?: Record<string, any>;
|
|
430
|
+
}>;
|
|
431
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
432
|
+
model: {
|
|
433
|
+
id: string;
|
|
434
|
+
type: string;
|
|
435
|
+
rpcDriverName: string | undefined;
|
|
436
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
437
|
+
rendererTypeName: string;
|
|
438
|
+
error: unknown;
|
|
439
|
+
statusMessage: string | undefined;
|
|
440
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
441
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
442
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
443
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
444
|
+
}, {
|
|
445
|
+
rendererTypeName: string;
|
|
446
|
+
error: unknown;
|
|
447
|
+
statusMessage: string | undefined;
|
|
448
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
449
|
+
}> | null;
|
|
450
|
+
readonly adapterConfig: any;
|
|
451
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
452
|
+
readonly isMinimized: boolean;
|
|
453
|
+
readonly parentDisplay: any;
|
|
454
|
+
readonly effectiveRpcDriverName: any;
|
|
455
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
456
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
457
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
458
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
459
|
+
}, {
|
|
460
|
+
rendererTypeName: string;
|
|
461
|
+
error: unknown;
|
|
462
|
+
statusMessage: string | undefined;
|
|
463
|
+
} & {
|
|
464
|
+
readonly RenderingComponent: import("react").FC<{
|
|
465
|
+
model: {
|
|
466
|
+
id: string;
|
|
467
|
+
type: string;
|
|
468
|
+
rpcDriverName: string | undefined;
|
|
469
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
470
|
+
rendererTypeName: string;
|
|
471
|
+
error: unknown;
|
|
472
|
+
statusMessage: string | undefined;
|
|
473
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
474
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
475
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
476
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
477
|
+
}, {
|
|
478
|
+
rendererTypeName: string;
|
|
479
|
+
error: unknown;
|
|
480
|
+
statusMessage: string | undefined;
|
|
481
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
482
|
+
onHorizontalScroll?: () => void;
|
|
483
|
+
blockState?: Record<string, any>;
|
|
484
|
+
}>;
|
|
485
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
486
|
+
model: {
|
|
487
|
+
id: string;
|
|
488
|
+
type: string;
|
|
489
|
+
rpcDriverName: string | undefined;
|
|
490
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
491
|
+
rendererTypeName: string;
|
|
492
|
+
error: unknown;
|
|
493
|
+
statusMessage: string | undefined;
|
|
494
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
495
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
496
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
497
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
498
|
+
}, {
|
|
499
|
+
rendererTypeName: string;
|
|
500
|
+
error: unknown;
|
|
501
|
+
statusMessage: string | undefined;
|
|
502
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
503
|
+
}> | null;
|
|
504
|
+
readonly adapterConfig: any;
|
|
505
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
506
|
+
readonly isMinimized: boolean;
|
|
507
|
+
readonly parentDisplay: any;
|
|
508
|
+
readonly effectiveRpcDriverName: any;
|
|
509
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
510
|
+
};
|
|
511
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
512
|
+
readonly DisplayMessageComponent: undefined | import("react").FC<any>;
|
|
513
|
+
trackMenuItems(): MenuItem[];
|
|
514
|
+
readonly viewMenuActions: MenuItem[];
|
|
515
|
+
regionCannotBeRendered(): null;
|
|
516
|
+
} & {
|
|
517
|
+
setStatusMessage(arg?: string): void;
|
|
518
|
+
setError(error?: unknown): void;
|
|
519
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
520
|
+
reload(): void;
|
|
521
|
+
} & {
|
|
522
|
+
renderProps(): any;
|
|
523
|
+
} & {
|
|
524
|
+
scrollTop: number;
|
|
525
|
+
} & {
|
|
526
|
+
readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
|
|
527
|
+
readonly height: number;
|
|
528
|
+
readonly loading: boolean;
|
|
529
|
+
readonly zoomThresholdSetting: number;
|
|
530
|
+
} & {
|
|
531
|
+
readonly rendererTypeName: any;
|
|
532
|
+
readonly session: import("../../session").ApolloSessionModel;
|
|
533
|
+
readonly regions: {
|
|
534
|
+
assemblyName: string;
|
|
535
|
+
refName: string;
|
|
536
|
+
start: number;
|
|
537
|
+
end: number;
|
|
538
|
+
}[];
|
|
539
|
+
regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
|
|
540
|
+
} & {
|
|
541
|
+
readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
|
|
542
|
+
readonly changeManager: import("../../ChangeManager").ChangeManager;
|
|
543
|
+
getAssemblyId(assemblyName: string): string;
|
|
544
|
+
readonly selectedFeature: AnnotationFeature | undefined;
|
|
545
|
+
readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
|
|
546
|
+
} & {
|
|
547
|
+
setScrollTop(scrollTop: number): void;
|
|
548
|
+
setHeight(displayHeight: number): number;
|
|
549
|
+
resizeHeight(distance: number): number;
|
|
550
|
+
showGraphicalOnly(): void;
|
|
551
|
+
showTableOnly(): void;
|
|
552
|
+
showGraphicalAndTable(): void;
|
|
553
|
+
toggleShowCheckResults(): void;
|
|
554
|
+
updateFilteredFeatureTypes(types: string[]): void;
|
|
555
|
+
setLoading(loading: boolean): void;
|
|
556
|
+
setZoomThresholdSetting({ zoomThreshold }: {
|
|
557
|
+
zoomThreshold: number;
|
|
558
|
+
}): void;
|
|
559
|
+
} & {
|
|
560
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
561
|
+
type: string;
|
|
562
|
+
label: string;
|
|
563
|
+
subMenu: ({
|
|
564
|
+
label: string;
|
|
565
|
+
type: string;
|
|
566
|
+
checked: boolean;
|
|
567
|
+
onClick: () => void;
|
|
568
|
+
} | {
|
|
569
|
+
label: string;
|
|
570
|
+
onClick: () => void;
|
|
571
|
+
type?: undefined;
|
|
572
|
+
checked?: undefined;
|
|
573
|
+
})[];
|
|
574
|
+
})[];
|
|
575
|
+
} & {
|
|
576
|
+
setSelectedFeature(feature?: AnnotationFeature): void;
|
|
577
|
+
setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
|
|
578
|
+
showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
|
|
579
|
+
afterAttach(): void;
|
|
580
|
+
} & {
|
|
581
|
+
seenFeatures: import("mobx").ObservableMap<string, AnnotationFeature>;
|
|
582
|
+
} & {
|
|
583
|
+
getAnnotationFeatureById(id: string): AnnotationFeature | undefined;
|
|
584
|
+
getGlyph(feature: AnnotationFeature): import("../glyphs/Glyph").Glyph;
|
|
585
|
+
} & {
|
|
586
|
+
addSeenFeature(feature: AnnotationFeature): void;
|
|
587
|
+
deleteSeenFeature(featureId: string): void;
|
|
588
|
+
} & {
|
|
589
|
+
readonly featureLayouts: Map<number, [number, string][]>[];
|
|
590
|
+
getFeatureLayoutPosition(feature: AnnotationFeature): {
|
|
591
|
+
layoutIndex: number;
|
|
592
|
+
layoutRow: number;
|
|
593
|
+
featureRow: number;
|
|
594
|
+
} | undefined;
|
|
595
|
+
} & {
|
|
596
|
+
readonly highestRow: number;
|
|
597
|
+
} & {
|
|
598
|
+
afterAttach(): void;
|
|
599
|
+
} & {
|
|
600
|
+
canvas: HTMLCanvasElement | null;
|
|
601
|
+
overlayCanvas: HTMLCanvasElement | null;
|
|
602
|
+
collaboratorCanvas: HTMLCanvasElement | null;
|
|
603
|
+
theme: import("@mui/material").Theme;
|
|
604
|
+
} & {
|
|
605
|
+
readonly featuresHeight: number;
|
|
606
|
+
} & {
|
|
607
|
+
toggleShown(): void;
|
|
608
|
+
setDetailsHeight(newHeight: number): void;
|
|
609
|
+
setCanvas(canvas: HTMLCanvasElement | null): void;
|
|
610
|
+
setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
|
|
611
|
+
setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
|
|
612
|
+
setTheme(theme: import("@mui/material").Theme): void;
|
|
613
|
+
} & {
|
|
614
|
+
afterAttach(): void;
|
|
615
|
+
} & {
|
|
616
|
+
apolloDragging: {
|
|
617
|
+
start: MousePosition;
|
|
618
|
+
current: MousePosition;
|
|
619
|
+
feature: AnnotationFeature;
|
|
620
|
+
edge: Edge;
|
|
621
|
+
shrinkParent: boolean;
|
|
622
|
+
} | null;
|
|
623
|
+
cursor: CSSProperties["cursor"] | undefined;
|
|
624
|
+
} & {
|
|
625
|
+
getMousePosition(event: React.MouseEvent): MousePosition;
|
|
626
|
+
} & {
|
|
627
|
+
continueDrag(mousePosition: MousePosition, event: CanvasMouseEvent): void;
|
|
628
|
+
setDragging(dragInfo?: {
|
|
629
|
+
start: MousePosition;
|
|
630
|
+
current: MousePosition;
|
|
631
|
+
feature: AnnotationFeature;
|
|
632
|
+
edge: Edge;
|
|
633
|
+
shrinkParent: boolean;
|
|
634
|
+
} | null): void;
|
|
635
|
+
} & {
|
|
636
|
+
setCursor(cursor?: CSSProperties["cursor"]): void;
|
|
637
|
+
updateFilteredTranscripts(forms: string[]): void;
|
|
638
|
+
} & {
|
|
639
|
+
onClick(): void;
|
|
640
|
+
} & {
|
|
641
|
+
contextMenuItems(event: React.MouseEvent<HTMLDivElement>): MenuItem[];
|
|
642
|
+
} & {
|
|
643
|
+
startDrag(mousePosition: MousePositionWithFeature, feature: AnnotationFeature, edge: Edge, shrinkParent?: boolean): void;
|
|
644
|
+
endDrag(): void;
|
|
645
|
+
} & {
|
|
646
|
+
onMouseDown(event: CanvasMouseEvent): void;
|
|
647
|
+
onMouseMove(event: CanvasMouseEvent): void;
|
|
648
|
+
onMouseLeave(event: CanvasMouseEvent): void;
|
|
649
|
+
onMouseUp(event: CanvasMouseEvent): void;
|
|
650
|
+
} & {
|
|
651
|
+
afterAttach(): void;
|
|
652
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
653
|
+
export type LinearApolloDisplayMouseEventsModel = ReturnType<typeof mouseEventsModelIntermediateFactory>;
|
|
654
|
+
export interface LinearApolloDisplayMouseEvents extends Instance<LinearApolloDisplayMouseEventsModel> {
|
|
655
|
+
}
|
|
656
|
+
//# sourceMappingURL=mouseEvents.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"mouseEvents.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/mouseEvents.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAK/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAChD,OAAO,EAAE,KAAK,QAAQ,EAAe,MAAM,0BAA0B,CAAA;AAErE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,OAAO,CAAA;AAE1C,OAAO,EACL,KAAK,IAAI,EACT,KAAK,aAAa,EAClB,KAAK,wBAAwB,EAI9B,MAAM,YAAY,CAAA;AACnB,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAA;AAIhD,wBAAgB,mCAAmC,CACjD,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eApBjB,0BAA0B,wBAAwB,0BACpD;iBACK,0BAA0B;0BAEpD,0BAA0B,gBAE5B,0BAEI;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;mBAUyC,wCAE7C;;;;mBAOE,0BAAyB,wBAAwB,0BAA0B;uBAE/D,0BACN,wBACA,0BAAqB;yBAGrB,0BACN;kCACyC,0BACtC,gBACQ,0BACE;;;;;kBAGP,0BAAkB,yBAAyB,0BAC/B;0BACZ,CAAL;kBAAgC,CAAC;;;;;;;mBAM1B,wCAAqC;;;;mBAKK,0BACnC,wBAAwB,0BAA0B;uBAC3C,0BACN,wBAEV,0BAAmB;yBACS,0BACd;kCACE,0BACV,gBAAgB,0BAA0B;;;;;kBAOhD,0BACc,yBACC,0BAEf;;;iCAMU,oBACL;;;;;;;;;;;mBAO+D,wCAElD;;;;;;;;;;2BAWgB,wCAGnC;;;;2BAS+B,0BACf,wBACP,0BAAyB;+BAEF,0BAA0B,wBACtD,0BAEX;iCAGM,0BAA0B;0CACX,0BACZ,gBAAgB,0BAErB;;;;;0BAImC,0BAC7B,yBAAyB,0BAA0B;kCAK7C,CAAC;0BACc,CAAC;;;;;;;2BAMP,wCAEA;;;;2BAST,0BACV,wBAAwB,0BAA0B;+BAE1C,0BAAyB,wBAC7B,0BAAe;iCAEjB,0BAAoB;0CAEd,0BACD,gBAEL,0BAAoB;;;;;0BAIjB,0BACO,yBAER,0BACH;;;yCAIyB,oBACjB;;;;mBAGoB,0BAChB,wBACD,0BAAU;uBAEZ,0BACZ,wBACQ,0BAAyB;yBAErB,0BAAoB;kCACJ,0BACrB,gBAAgB,0BAChB;;;;;;;;;;;2BAaH,wCAAoC;;;;2BAKR,0BACnB,wBAAwB,0BACjC;+BACW,0BACb,wBAAwB,0BACxB;iCAE2C,0BAC/B;0CACI,0BAA0B,gBACxC,0BACS;;;;;0BAQoB,0BACjC,yBAAyB,0BAA0B;kCACH,CAAC;0BACrB,CAAC;;;;;;;2BAMuB,wCACrB;;;;2BAUpB,0BACA,wBACE,0BAEX;+BAIQ,0BAFyB,wBAEzB,0BADsB;iCAChB,0BAA0B;0CAEhC,0BACQ,gBAAgB,0BACrC;;;;;0BAOuB,0BACX,yBAES,0BAAyB;;;yCAIb,oBAAqB;;;;kBASzC,0BADU,yBACV,0BACV;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oBAlQhD;QACtB,KAAK,EAAE,aAAa,CAAA;QACpB,OAAO,EAAE,aAAa,CAAA;QACtB,OAAO,EAAE,iBAAiB,CAAA;QAC1B,IAAI,EAAE,IAAI,CAAA;QACV,YAAY,EAAE,OAAO,CAAA;KACtB,GAAG,IAAI;YACa,aAAa,CAAC,QAAQ,CAAC,GAAG,SAAS;;4BAGhC,KAAK,CAAC,UAAU,GAAG,aAAa;;gCA2C5B,aAAa,SAAS,gBAAgB;;eApDzD,aAAa;iBACX,aAAa;iBACb,iBAAiB;cACpB,IAAI;sBACI,OAAO;;;uBA8DJ,aAAa,CAAC,QAAQ,CAAC;qCAMT,MAAM,EAAE;;;yGAU9C;AAED,wBAAgB,uBAAuB,CACrC,aAAa,EAAE,aAAa,EAC5B,YAAY,EAAE,0BAA0B;eApHjB,0BAA0B,wBAAwB,0BACpD;iBACK,0BAA0B;0BAEpD,0BAA0B,gBAE5B,0BAEI;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;mBAUyC,wCAE7C;;;;mBAOE,0BAAyB,wBAAwB,0BAA0B;uBAE/D,0BACN,wBACA,0BAAqB;yBAGrB,0BACN;kCACyC,0BACtC,gBACQ,0BACE;;;;;kBAGP,0BAAkB,yBAAyB,0BAC/B;0BACZ,CAAL;kBAAgC,CAAC;;;;;;;mBAM1B,wCAAqC;;;;mBAKK,0BACnC,wBAAwB,0BAA0B;uBAC3C,0BACN,wBAEV,0BAAmB;yBACS,0BACd;kCACE,0BACV,gBAAgB,0BAA0B;;;;;kBAOhD,0BACc,yBACC,0BAEf;;;iCAMU,oBACL;;;;;;;;;;;mBAO+D,wCAElD;;;;;;;;;;2BAWgB,wCAGnC;;;;2BAS+B,0BACf,wBACP,0BAAyB;+BAEF,0BAA0B,wBACtD,0BAEX;iCAGM,0BAA0B;0CACX,0BACZ,gBAAgB,0BAErB;;;;;0BAImC,0BAC7B,yBAAyB,0BAA0B;kCAK7C,CAAC;0BACc,CAAC;;;;;;;2BAMP,wCAEA;;;;2BAST,0BACV,wBAAwB,0BAA0B;+BAE1C,0BAAyB,wBAC7B,0BAAe;iCAEjB,0BAAoB;0CAEd,0BACD,gBAEL,0BAAoB;;;;;0BAIjB,0BACO,yBAER,0BACH;;;yCAIyB,oBACjB;;;;mBAGoB,0BAChB,wBACD,0BAAU;uBAEZ,0BACZ,wBACQ,0BAAyB;yBAErB,0BAAoB;kCACJ,0BACrB,gBAAgB,0BAChB;;;;;;;;;;;2BAaH,wCAAoC;;;;2BAKR,0BACnB,wBAAwB,0BACjC;+BACW,0BACb,wBAAwB,0BACxB;iCAE2C,0BAC/B;0CACI,0BAA0B,gBACxC,0BACS;;;;;0BAQoB,0BACjC,yBAAyB,0BAA0B;kCACH,CAAC;0BACrB,CAAC;;;;;;;2BAMuB,wCACrB;;;;2BAUpB,0BACA,wBACE,0BAEX;+BAIQ,0BAFyB,wBAEzB,0BADsB;iCAChB,0BAA0B;0CAEhC,0BACQ,gBAAgB,0BACrC;;;;;0BAOuB,0BACX,yBAES,0BAAyB;;;yCAIb,oBAAqB;;;;kBASzC,0BADU,yBACV,0BACV;;kCAA6D,qCAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oBAlQhD;QACtB,KAAK,EAAE,aAAa,CAAA;QACpB,OAAO,EAAE,aAAa,CAAA;QACtB,OAAO,EAAE,iBAAiB,CAAA;QAC1B,IAAI,EAAE,IAAI,CAAA;QACV,YAAY,EAAE,OAAO,CAAA;KACtB,GAAG,IAAI;YACa,aAAa,CAAC,QAAQ,CAAC,GAAG,SAAS;;4BAGhC,KAAK,CAAC,UAAU,GAAG,aAAa;;gCA2C5B,aAAa,SAAS,gBAAgB;;eApDzD,aAAa;iBACX,aAAa;iBACb,iBAAiB;cACpB,IAAI;sBACI,OAAO;;;uBA8DJ,aAAa,CAAC,QAAQ,CAAC;qCAMT,MAAM,EAAE;;;;4BAsBnB,KAAK,CAAC,UAAU,CAAC,cAAc,CAAC,GAAG,QAAQ,EAAE;;6BAkBlD,wBAAwB,WAC9B,iBAAiB,QACpB,IAAI;;;uBA6DO,gBAAgB;uBAOhB,gBAAgB;wBAef,gBAAgB;qBAUnB,gBAAgB;;;yGA+DtC;AAED,MAAM,MAAM,mCAAmC,GAAG,UAAU,CAC1D,OAAO,mCAAmC,CAC3C,CAAA;AAID,MAAM,WAAW,8BACf,SAAQ,QAAQ,CAAC,mCAAmC,CAAC;CAAG"}
|