@apollo-annotation/jbrowse-plugin-apollo 0.3.10 → 0.3.12

package/dist/LinearApolloDisplay/stateModel/index.d.ts

@@ -0,0 +1,349 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { type Instance } from '@jbrowse/mobx-state-tree';
+export declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & {
+    cleanupBoundary: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+} & {
+    apolloRowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    detailsMinHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    detailsHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    lastRowTooltipBufferHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    filteredTranscripts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    tabularEditor: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
+        isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        featureCollapsed: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
+        filterText: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
+    }, {
+        setFeatureCollapsed(id: string, state: boolean): void;
+        setFilterText(text: string): void;
+        clearFilterText(): void;
+        collapseAllFeatures(): void;
+        togglePane(): void;
+        hidePane(): void;
+        showPane(): void;
+    }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    scrollTop: number;
+} & {
+    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+    readonly height: number;
+    readonly loading: boolean;
+    readonly zoomThresholdSetting: number;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: import("../../session").ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
+} & {
+    readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    showGraphicalOnly(): void;
+    showTableOnly(): void;
+    showGraphicalAndTable(): void;
+    toggleShowCheckResults(): void;
+    updateFilteredFeatureTypes(types: string[]): void;
+    setLoading(loading: boolean): void;
+    setZoomThresholdSetting({ zoomThreshold }: {
+        zoomThreshold: number;
+    }): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: ({
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        } | {
+            label: string;
+            onClick: () => void;
+            type?: undefined;
+            checked?: undefined;
+        })[];
+    })[];
+} & {
+    setSelectedFeature(feature?: import("@apollo-annotation/mst").AnnotationFeature): void;
+    setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
+    showFeatureDetailsWidget(feature: import("@apollo-annotation/mst").AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
+    afterAttach(): void;
+} & {
+    seenFeatures: import("mobx").ObservableMap<string, import("@apollo-annotation/mst").AnnotationFeature>;
+} & {
+    getAnnotationFeatureById(id: string): import("@apollo-annotation/mst").AnnotationFeature | undefined;
+    getGlyph(feature: import("@apollo-annotation/mst").AnnotationFeature): import("../glyphs/Glyph").Glyph;
+} & {
+    addSeenFeature(feature: import("@apollo-annotation/mst").AnnotationFeature): void;
+    deleteSeenFeature(featureId: string): void;
+} & {
+    readonly featureLayouts: Map<number, [number, string][]>[];
+    getFeatureLayoutPosition(feature: import("@apollo-annotation/mst").AnnotationFeature): {
+        layoutIndex: number;
+        layoutRow: number;
+        featureRow: number;
+    } | undefined;
+} & {
+    readonly highestRow: number;
+} & {
+    afterAttach(): void;
+} & {
+    canvas: HTMLCanvasElement | null;
+    overlayCanvas: HTMLCanvasElement | null;
+    collaboratorCanvas: HTMLCanvasElement | null;
+    theme: import("@mui/material").Theme;
+} & {
+    readonly featuresHeight: number;
+} & {
+    toggleShown(): void;
+    setDetailsHeight(newHeight: number): void;
+    setCanvas(canvas: HTMLCanvasElement | null): void;
+    setOverlayCanvas(canvas: HTMLCanvasElement | null): void;
+    setCollaboratorCanvas(canvas: HTMLCanvasElement | null): void;
+    setTheme(theme: import("@mui/material").Theme): void;
+} & {
+    afterAttach(): void;
+} & {
+    apolloDragging: {
+        start: import("../../util").MousePosition;
+        current: import("../../util").MousePosition;
+        feature: import("@apollo-annotation/mst").AnnotationFeature;
+        edge: import("../../util").Edge;
+        shrinkParent: boolean;
+    } | null;
+    cursor: import("react").CSSProperties["cursor"] | undefined;
+} & {
+    getMousePosition(event: React.MouseEvent): import("../../util").MousePosition;
+} & {
+    continueDrag(mousePosition: import("../../util").MousePosition, event: import("../types").CanvasMouseEvent): void;
+    setDragging(dragInfo?: {
+        start: import("../../util").MousePosition;
+        current: import("../../util").MousePosition;
+        feature: import("@apollo-annotation/mst").AnnotationFeature;
+        edge: import("../../util").Edge;
+        shrinkParent: boolean;
+    } | null): void;
+} & {
+    setCursor(cursor?: import("react").CSSProperties["cursor"]): void;
+    updateFilteredTranscripts(forms: string[]): void;
+} & {
+    onClick(): void;
+} & {
+    contextMenuItems(event: React.MouseEvent<HTMLDivElement>): import("@jbrowse/core/ui").MenuItem[];
+} & {
+    startDrag(mousePosition: import("../../util").MousePositionWithFeature, feature: import("@apollo-annotation/mst").AnnotationFeature, edge: import("../../util").Edge, shrinkParent?: boolean): void;
+    endDrag(): void;
+} & {
+    onMouseDown(event: import("../types").CanvasMouseEvent): void;
+    onMouseMove(event: import("../types").CanvasMouseEvent): void;
+    onMouseLeave(event: import("../types").CanvasMouseEvent): void;
+    onMouseUp(event: import("../types").CanvasMouseEvent): void;
+} & {
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+export type LinearApolloDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export interface LinearApolloDisplay extends Instance<LinearApolloDisplayStateModel> {
+}
+//# sourceMappingURL=index.d.ts.map

package/dist/LinearApolloDisplay/stateModel/index.d.ts.map

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package/dist/LinearApolloDisplay/stateModel/layouts.d.ts

@@ -0,0 +1,273 @@
+import type { AnnotationFeature } from '@apollo-annotation/mst';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { ApolloSessionModel } from '../../session';
+export declare function layoutsModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
+    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+} & {
+    type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+    heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
+    filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+} & {
+    cleanupBoundary: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+    statusMessage: string | undefined;
+} & {
+    readonly RenderingComponent: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: () => void;
+        blockState?: Record<string, any>;
+    }>;
+    readonly DisplayBlurb: import("react").FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+    readonly isMinimized: boolean;
+    readonly parentDisplay: any;
+    readonly effectiveRpcDriverName: any;
+} & {
+    renderProps(): any;
+    renderingProps(): {
+        displayModel: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+            id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+            statusMessage: string | undefined;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: () => void;
+                blockState?: Record<string, any>;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
+                    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                    statusMessage: string | undefined;
+                }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
+            readonly isMinimized: boolean;
+            readonly parentDisplay: any;
+            readonly effectiveRpcDriverName: any;
+        }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    };
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): null;
+} & {
+    setStatusMessage(arg?: string): void;
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    renderProps(): any;
+} & {
+    scrollTop: number;
+} & {
+    readonly lgv: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel;
+    readonly height: number;
+    readonly loading: boolean;
+    readonly zoomThresholdSetting: number;
+} & {
+    readonly rendererTypeName: any;
+    readonly session: ApolloSessionModel;
+    readonly regions: {
+        assemblyName: string;
+        refName: string;
+        start: number;
+        end: number;
+    }[];
+    regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
+} & {
+    readonly apolloInternetAccount: import("../../ApolloInternetAccount/model").ApolloInternetAccountModel | undefined;
+    readonly changeManager: import("../../ChangeManager").ChangeManager;
+    getAssemblyId(assemblyName: string): string;
+    readonly selectedFeature: AnnotationFeature | undefined;
+    readonly hoveredFeature: import("../../session").HoveredFeature | undefined;
+} & {
+    setScrollTop(scrollTop: number): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    showGraphicalOnly(): void;
+    showTableOnly(): void;
+    showGraphicalAndTable(): void;
+    toggleShowCheckResults(): void;
+    updateFilteredFeatureTypes(types: string[]): void;
+    setLoading(loading: boolean): void;
+    setZoomThresholdSetting({ zoomThreshold }: {
+        zoomThreshold: number;
+    }): void;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        type: string;
+        label: string;
+        subMenu: ({
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        } | {
+            label: string;
+            onClick: () => void;
+            type?: undefined;
+            checked?: undefined;
+        })[];
+    })[];
+} & {
+    setSelectedFeature(feature?: AnnotationFeature): void;
+    setHoveredFeature(hoveredFeature?: import("../../session").HoveredFeature): void;
+    showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
+    afterAttach(): void;
+} & {
+    seenFeatures: import("mobx").ObservableMap<string, AnnotationFeature>;
+} & {
+    getAnnotationFeatureById(id: string): AnnotationFeature | undefined;
+    getGlyph(feature: AnnotationFeature): import("../glyphs/Glyph").Glyph;
+} & {
+    addSeenFeature(feature: AnnotationFeature): void;
+    deleteSeenFeature(featureId: string): void;
+} & {
+    readonly featureLayouts: Map<number, [number, string][]>[];
+    getFeatureLayoutPosition(feature: AnnotationFeature): {
+        layoutIndex: number;
+        layoutRow: number;
+        featureRow: number;
+    } | undefined;
+} & {
+    readonly highestRow: number;
+} & {
+    afterAttach(): void;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
+//# sourceMappingURL=layouts.d.ts.map

package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map

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