sequencescape-client-api 0.3.5
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- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
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- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
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- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
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- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
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- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
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- data/lib/sequencescape/robot.rb +5 -0
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- data/lib/sequencescape/stamp.rb +9 -0
- data/lib/sequencescape/state_change.rb +11 -0
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- data/lib/sequencescape/transfer_request_collection.rb +8 -0
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- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
- data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
- data/lib/sequencescape-api/associations/has_many.rb +123 -0
- data/lib/sequencescape-api/associations.rb +112 -0
- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
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Class: Sequencescape::Api::Associations::HasMany::InlineAssociationProxy
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<span class='title'><span class='object_link'><a href="../../../../Sequencescape.html" title="Sequencescape (module)">Sequencescape</a></span></span> » <span class='title'><span class='object_link'><a href="../../../Api.html" title="Sequencescape::Api (class)">Api</a></span></span> » <span class='title'><span class='object_link'><a href="../../Associations.html" title="Sequencescape::Api::Associations (module)">Associations</a></span></span> » <span class='title'><span class='object_link'><a href="../HasMany.html" title="Sequencescape::Api::Associations::HasMany (module)">HasMany</a></span></span>
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<span class="title">InlineAssociationProxy</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_owner'>owner</span><span class='comma'>,</span> <span class='id identifier rubyid_json'>json</span> <span class='op'>=</span> <span class='kw'>nil</span><span class='rparen'>)</span>
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<span class='kw'>when</span> <span class='ivar'>@attributes</span><span class='period'>.</span><span class='id identifier rubyid_is_a?'>is_a?</span><span class='lparen'>(</span><span class='const'>Hash</span><span class='rparen'>)</span> <span class='kw'>then</span> <span class='ivar'>@attributes</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_uuid'>uuid</span><span class='comma'>,</span> <span class='id identifier rubyid_json'>json</span><span class='op'>|</span> <span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='id identifier rubyid_json'>json</span><span class='period'>.</span><span class='id identifier rubyid_merge'>merge</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>uuid</span><span class='tstring_end'>'</span></span> <span class='op'>=></span> <span class='id identifier rubyid_uuid'>uuid</span><span class='rparen'>)</span><span class='rparen'>)</span> <span class='rbrace'>}</span>
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<span class='kw'>else</span> <span class='id identifier rubyid_raise'>raise</span> <span class='const'>StandardError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Cannot handle has_many JSON: </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_json'>json</span><span class='period'>.</span><span class='id identifier rubyid_inspect'>inspect</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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<span class='kw'>def</span> <span class='id identifier rubyid_all'>all</span>
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<span class='ivar'>@objects</span>
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<span class='kw'>end</span></pre>
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</td>
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</tr>
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<div class="method_details ">
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<h3 class="signature " id="changed?-instance_method">
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#<strong>changed?</strong> ⇒ <tt>Boolean</tt>
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<div class="discussion">
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<p>We are changed if any of our objects have been changed.</p>
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</div>
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<div class="tags">
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<p class="tag_title">Returns:</p>
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<ul class="return">
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403
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<li>
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404
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405
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<span class='type'>(<tt>Boolean</tt>)</span>
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407
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+
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408
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+
|
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409
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</li>
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411
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412
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</ul>
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+
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414
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</div><table class="source_code">
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<tr>
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416
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<td>
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417
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<pre class="lines">
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419
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79
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80
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422
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81</pre>
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</td>
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424
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<td>
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425
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/associations/has_many.rb', line 79</span>
|
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426
|
+
|
|
427
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<span class='kw'>def</span> <span class='id identifier rubyid_changed?'>changed?</span>
|
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428
|
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<span class='ivar'>@objects</span><span class='period'>.</span><span class='id identifier rubyid_any?'>any?</span><span class='lparen'>(</span><span class='op'>&</span><span class='symbol'>:changed?</span><span class='rparen'>)</span>
|
|
429
|
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<span class='kw'>end</span></pre>
|
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430
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</td>
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431
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</tr>
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</table>
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</div>
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434
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+
|
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435
|
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<div class="method_details ">
|
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|
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<h3 class="signature " id="each_page-instance_method">
|
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437
|
+
|
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438
|
+
#<strong>each_page</strong> {|@objects| ... } ⇒ <tt>Object</tt>
|
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|
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440
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|
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441
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+
|
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442
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443
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|
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</h3><div class="docstring">
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<div class="discussion">
|
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446
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+
|
|
447
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+
|
|
448
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+
</div>
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|
449
|
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</div>
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|
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|
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<div class="tags">
|
|
451
|
+
|
|
452
|
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<p class="tag_title">Yields:</p>
|
|
453
|
+
<ul class="yield">
|
|
454
|
+
|
|
455
|
+
<li>
|
|
456
|
+
|
|
457
|
+
|
|
458
|
+
<span class='type'>(<tt>@objects</tt>)</span>
|
|
459
|
+
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
</li>
|
|
463
|
+
|
|
464
|
+
</ul>
|
|
465
|
+
|
|
466
|
+
</div><table class="source_code">
|
|
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|
+
<tr>
|
|
468
|
+
<td>
|
|
469
|
+
<pre class="lines">
|
|
470
|
+
|
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471
|
+
|
|
472
|
+
69
|
|
473
|
+
70
|
|
474
|
+
71</pre>
|
|
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|
+
</td>
|
|
476
|
+
<td>
|
|
477
|
+
<pre class="code"><span class="info file"># File 'lib/sequencescape-api/associations/has_many.rb', line 69</span>
|
|
478
|
+
|
|
479
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_each_page'>each_page</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
480
|
+
<span class='kw'>yield</span><span class='lparen'>(</span><span class='ivar'>@objects</span><span class='rparen'>)</span>
|
|
481
|
+
<span class='kw'>end</span></pre>
|
|
482
|
+
</td>
|
|
483
|
+
</tr>
|
|
484
|
+
</table>
|
|
485
|
+
</div>
|
|
486
|
+
|
|
487
|
+
<div class="method_details ">
|
|
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|
+
<h3 class="signature " id="find-instance_method">
|
|
489
|
+
|
|
490
|
+
#<strong>find</strong>(uuid) ⇒ <tt>Object</tt>
|
|
491
|
+
|
|
492
|
+
|
|
493
|
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|
|
494
|
+
|
|
495
|
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|
|
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|
+
</h3><table class="source_code">
|
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|
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<tr>
|
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|
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<td>
|
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|
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<pre class="lines">
|
|
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|
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|
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|
502
|
+
61
|
|
503
|
+
62
|
|
504
|
+
63</pre>
|
|
505
|
+
</td>
|
|
506
|
+
<td>
|
|
507
|
+
<pre class="code"><span class="info file"># File 'lib/sequencescape-api/associations/has_many.rb', line 61</span>
|
|
508
|
+
|
|
509
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_find'>find</span><span class='lparen'>(</span><span class='id identifier rubyid_uuid'>uuid</span><span class='rparen'>)</span>
|
|
510
|
+
<span class='ivar'>@objects</span><span class='period'>.</span><span class='id identifier rubyid_detect'>detect</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_o'>o</span><span class='op'>|</span> <span class='id identifier rubyid_o'>o</span><span class='period'>.</span><span class='id identifier rubyid_uuid'>uuid</span> <span class='op'>==</span> <span class='id identifier rubyid_uuid'>uuid</span> <span class='rbrace'>}</span>
|
|
511
|
+
<span class='kw'>end</span></pre>
|
|
512
|
+
</td>
|
|
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|
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<div id="footer">
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Generated on Wed Nov 16 16:31:18 2016 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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0.9.5 (ruby-2.3.0).
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