sequencescape-client-api 0.3.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +4 -0
- data/README.markdown +4 -0
- data/Rakefile +2 -0
- data/doc/Array.html +192 -0
- data/doc/BaitLibrary.html +139 -0
- data/doc/Hash.html +242 -0
- data/doc/NilClass.html +214 -0
- data/doc/Sequencescape/Api/Actions/ClassActionHelpers.html +213 -0
- data/doc/Sequencescape/Api/Actions/InstanceActionHelpers.html +282 -0
- data/doc/Sequencescape/Api/Actions.html +197 -0
- data/doc/Sequencescape/Api/Associations/Base/InstanceMethods.html +352 -0
- data/doc/Sequencescape/Api/Associations/Base.html +237 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/AssociationProxy.html +332 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour/LoadHandler.html +279 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour.html +432 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/InlineAssociationProxy.html +173 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo.html +212 -0
- data/doc/Sequencescape/Api/Associations/HasMany/AssociationProxy.html +366 -0
- data/doc/Sequencescape/Api/Associations/HasMany/InlineAssociationProxy.html +529 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Json.html +250 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation/CompositeErrors.html +493 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation.html +245 -0
- data/doc/Sequencescape/Api/Associations/HasMany.html +212 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods/CompositeErrors.html +379 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods.html +496 -0
- data/doc/Sequencescape/Api/Associations.html +201 -0
- data/doc/Sequencescape/Api/BasicErrorHandling.html +371 -0
- data/doc/Sequencescape/Api/Composition/Target.html +262 -0
- data/doc/Sequencescape/Api/Composition.html +215 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Actions.html +611 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Helpers.html +233 -0
- data/doc/Sequencescape/Api/ConnectionFactory.html +321 -0
- data/doc/Sequencescape/Api/ErrorHandling/TurnOffValidationOfUuidOnlyRecords.html +189 -0
- data/doc/Sequencescape/Api/ErrorHandling.html +201 -0
- data/doc/Sequencescape/Api/FinderMethods/AllHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods/Caching.html +183 -0
- data/doc/Sequencescape/Api/FinderMethods/Delegation.html +189 -0
- data/doc/Sequencescape/Api/FinderMethods/FindByUuidHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods.html +364 -0
- data/doc/Sequencescape/Api/GeneralError.html +176 -0
- data/doc/Sequencescape/Api/JsonError.html +205 -0
- data/doc/Sequencescape/Api/ModifyingHandler.html +359 -0
- data/doc/Sequencescape/Api/PageOfResults/UpdateHandler.html +279 -0
- data/doc/Sequencescape/Api/PageOfResults.html +611 -0
- data/doc/Sequencescape/Api/Rails/ApplicationController.html +207 -0
- data/doc/Sequencescape/Api/Rails/Resourced.html +269 -0
- data/doc/Sequencescape/Api/Rails.html +117 -0
- data/doc/Sequencescape/Api/Resource/ActiveModel.html +287 -0
- data/doc/Sequencescape/Api/Resource/Attributes/InstanceMethods.html +272 -0
- data/doc/Sequencescape/Api/Resource/Attributes.html +199 -0
- data/doc/Sequencescape/Api/Resource/Groups/InstanceMethods.html +378 -0
- data/doc/Sequencescape/Api/Resource/Groups/Json.html +112 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy/InstanceMethods.html +256 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy.html +177 -0
- data/doc/Sequencescape/Api/Resource/Groups.html +270 -0
- data/doc/Sequencescape/Api/Resource/InstanceMethods.html +344 -0
- data/doc/Sequencescape/Api/Resource/Json/ClassMethods.html +243 -0
- data/doc/Sequencescape/Api/Resource/Json/CoercionHandler.html +279 -0
- data/doc/Sequencescape/Api/Resource/Json.html +405 -0
- data/doc/Sequencescape/Api/Resource/Modifications.html +295 -0
- data/doc/Sequencescape/Api/Resource.html +436 -0
- data/doc/Sequencescape/Api/ResourceInvalid.html +289 -0
- data/doc/Sequencescape/Api/ResourceModelProxy.html +444 -0
- data/doc/Sequencescape/Api/Version1.html +218 -0
- data/doc/Sequencescape/Api/Version2.html +222 -0
- data/doc/Sequencescape/Api.html +704 -0
- data/doc/Sequencescape/Asset.html +262 -0
- data/doc/Sequencescape/AssetAudit.html +258 -0
- data/doc/Sequencescape/AssetGroup.html +258 -0
- data/doc/Sequencescape/BaitLibraryLayout.html +258 -0
- data/doc/Sequencescape/BarcodePrinter.html +258 -0
- data/doc/Sequencescape/BarcodedAsset.html +293 -0
- data/doc/Sequencescape/Batch.html +327 -0
- data/doc/Sequencescape/Behaviour/Barcoded.html +195 -0
- data/doc/Sequencescape/Behaviour/Labeled.html +189 -0
- data/doc/Sequencescape/Behaviour/Qced/QcFile.html +244 -0
- data/doc/Sequencescape/Behaviour/Qced.html +199 -0
- data/doc/Sequencescape/Behaviour/Receptacle/Aliquot.html +258 -0
- data/doc/Sequencescape/Behaviour/Receptacle.html +195 -0
- data/doc/Sequencescape/Behaviour/StateDriven.html +205 -0
- data/doc/Sequencescape/Behaviour.html +130 -0
- data/doc/Sequencescape/BulkTransfer.html +258 -0
- data/doc/Sequencescape/Comment.html +258 -0
- data/doc/Sequencescape/Lane.html +282 -0
- data/doc/Sequencescape/LibraryEvent.html +258 -0
- data/doc/Sequencescape/LibraryTube.html +322 -0
- data/doc/Sequencescape/Lot.html +258 -0
- data/doc/Sequencescape/LotType/LotCreator.html +182 -0
- data/doc/Sequencescape/LotType.html +268 -0
- data/doc/Sequencescape/MultiplexedLibraryTube.html +326 -0
- data/doc/Sequencescape/Order.html +338 -0
- data/doc/Sequencescape/OrderTemplate/OrderCreator.html +182 -0
- data/doc/Sequencescape/OrderTemplate.html +268 -0
- data/doc/Sequencescape/Pipeline.html +258 -0
- data/doc/Sequencescape/Plate/CommentsCreation.html +184 -0
- data/doc/Sequencescape/Plate/CurrentVolumeSubstraction.html +236 -0
- data/doc/Sequencescape/Plate/Pooling.html +249 -0
- data/doc/Sequencescape/Plate/WellStructure.html +313 -0
- data/doc/Sequencescape/Plate.html +446 -0
- data/doc/Sequencescape/PlateConversion.html +258 -0
- data/doc/Sequencescape/PlateCreation.html +258 -0
- data/doc/Sequencescape/PlatePurpose/PlateCreation.html +186 -0
- data/doc/Sequencescape/PlatePurpose.html +268 -0
- data/doc/Sequencescape/PlateTemplate.html +282 -0
- data/doc/Sequencescape/PooledPlateCreation.html +258 -0
- data/doc/Sequencescape/Project.html +258 -0
- data/doc/Sequencescape/QcDecision.html +258 -0
- data/doc/Sequencescape/QcFile.html +327 -0
- data/doc/Sequencescape/Qcable.html +258 -0
- data/doc/Sequencescape/QcableCreator.html +258 -0
- data/doc/Sequencescape/Request.html +258 -0
- data/doc/Sequencescape/Robot.html +258 -0
- data/doc/Sequencescape/Sample.html +258 -0
- data/doc/Sequencescape/SampleTube.html +318 -0
- data/doc/Sequencescape/Search/BaseHandler.html +234 -0
- data/doc/Sequencescape/Search/MultipleResultHandler.html +276 -0
- data/doc/Sequencescape/Search/SingleResultHandler.html +303 -0
- data/doc/Sequencescape/Search.html +431 -0
- data/doc/Sequencescape/SpecificTubeCreation.html +258 -0
- data/doc/Sequencescape/Stamp.html +258 -0
- data/doc/Sequencescape/StateChange.html +258 -0
- data/doc/Sequencescape/Study.html +258 -0
- data/doc/Sequencescape/Submission.html +258 -0
- data/doc/Sequencescape/SubmissionPool.html +258 -0
- data/doc/Sequencescape/Tag/Group.html +219 -0
- data/doc/Sequencescape/Tag.html +149 -0
- data/doc/Sequencescape/Tag2Layout.html +258 -0
- data/doc/Sequencescape/Tag2LayoutTemplate.html +258 -0
- data/doc/Sequencescape/TagGroup.html +258 -0
- data/doc/Sequencescape/TagLayout.html +258 -0
- data/doc/Sequencescape/TagLayoutTemplate.html +258 -0
- data/doc/Sequencescape/Template.html +258 -0
- data/doc/Sequencescape/Transfer.html +258 -0
- data/doc/Sequencescape/TransferTemplate.html +258 -0
- data/doc/Sequencescape/Tube.html +319 -0
- data/doc/Sequencescape/TubeCreation.html +258 -0
- data/doc/Sequencescape/TubeFromTubeCreation.html +258 -0
- data/doc/Sequencescape/TubePurpose/TubeCreation.html +186 -0
- data/doc/Sequencescape/TubePurpose.html +268 -0
- data/doc/Sequencescape/User.html +258 -0
- data/doc/Sequencescape/VolumeUpdate.html +258 -0
- data/doc/Sequencescape/Well.html +362 -0
- data/doc/Sequencescape.html +121 -0
- data/doc/_index.html +1248 -0
- data/doc/class_list.html +51 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +58 -0
- data/doc/css/style.css +481 -0
- data/doc/file.README.html +76 -0
- data/doc/file_list.html +56 -0
- data/doc/frames.html +17 -0
- data/doc/index.html +76 -0
- data/doc/js/app.js +243 -0
- data/doc/js/full_list.js +216 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1411 -0
- data/doc/top-level-namespace.html +114 -0
- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
- data/lib/sequencescape/order.rb +13 -0
- data/lib/sequencescape/order_template.rb +19 -0
- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
- data/lib/sequencescape/plate_creation.rb +8 -0
- data/lib/sequencescape/plate_purpose.rb +24 -0
- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
- data/lib/sequencescape/project.rb +11 -0
- data/lib/sequencescape/qc_decision.rb +9 -0
- data/lib/sequencescape/qc_file.rb +14 -0
- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
- data/lib/sequencescape/request.rb +16 -0
- data/lib/sequencescape/robot.rb +5 -0
- data/lib/sequencescape/sample.rb +51 -0
- data/lib/sequencescape/sample_tube.rb +7 -0
- data/lib/sequencescape/search.rb +80 -0
- data/lib/sequencescape/specific_tube_creation.rb +8 -0
- data/lib/sequencescape/stamp.rb +9 -0
- data/lib/sequencescape/state_change.rb +11 -0
- data/lib/sequencescape/study.rb +14 -0
- data/lib/sequencescape/submission.rb +16 -0
- data/lib/sequencescape/submission_pool.rb +7 -0
- data/lib/sequencescape/tag.rb +14 -0
- data/lib/sequencescape/tag2_layout.rb +10 -0
- data/lib/sequencescape/tag2_layout_template.rb +9 -0
- data/lib/sequencescape/tag_group.rb +4 -0
- data/lib/sequencescape/tag_layout.rb +10 -0
- data/lib/sequencescape/tag_layout_template.rb +15 -0
- data/lib/sequencescape/template.rb +6 -0
- data/lib/sequencescape/transfer.rb +9 -0
- data/lib/sequencescape/transfer_request.rb +12 -0
- data/lib/sequencescape/transfer_request_collection.rb +8 -0
- data/lib/sequencescape/transfer_template.rb +9 -0
- data/lib/sequencescape/tube.rb +26 -0
- data/lib/sequencescape/tube_creation.rb +8 -0
- data/lib/sequencescape/tube_from_tube_creation.rb +8 -0
- data/lib/sequencescape/tube_purpose.rb +24 -0
- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
- data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
- data/lib/sequencescape-api/associations/has_many.rb +123 -0
- data/lib/sequencescape-api/associations.rb +112 -0
- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
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<span class='title'><span class='object_link'><a href="../../Sequencescape.html" title="Sequencescape (module)">Sequencescape</a></span></span> » <span class='title'><span class='object_link'><a href="../Plate.html" title="Sequencescape::Plate (class)">Plate</a></span></span>
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<span class="title">Pooling</span>
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<span class='title'><span class='object_link'><a href="../../Sequencescape.html" title="Sequencescape (module)">Sequencescape</a></span></span> » <span class='title'><span class='object_link'><a href="../Plate.html" title="Sequencescape::Plate (class)">Plate</a></span></span>
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<div id="content"><h1>Module: Sequencescape::Plate::WellStructure
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<pre class="code"><span class="info file"># File 'lib/sequencescape/plate/well_structure.rb', line 10</span>
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<span class='kw'>else</span> <span class='id identifier rubyid_raise'>raise</span> <span class='const'>RuntimeError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Unknown plate size </span><span class='embexpr_beg'>#{</span><span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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<pre class="code"><span class="info file"># File 'lib/sequencescape/plate/well_structure.rb', line 18</span>
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<span class='id identifier rubyid_locations'>locations</span> <span class='op'><<</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_row'>row</span><span class='embexpr_end'>}</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_column'>column</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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<pre class="code"><span class="info file"># File 'lib/sequencescape/plate/well_structure.rb', line 2</span>
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<span class='kw'>else</span> <span class='id identifier rubyid_raise'>raise</span> <span class='const'>RuntimeError</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Unknown plate size </span><span class='embexpr_beg'>#{</span><span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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Generated on Wed Nov 16 16:31:16 2016 by
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0.9.5 (ruby-2.3.0).
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