sequencescape-client-api 0.3.5
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- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +4 -0
- data/README.markdown +4 -0
- data/Rakefile +2 -0
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- data/doc/Sequencescape/TagGroup.html +258 -0
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- data/doc/_index.html +1248 -0
- data/doc/class_list.html +51 -0
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- data/doc/top-level-namespace.html +114 -0
- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
- data/lib/sequencescape/order.rb +13 -0
- data/lib/sequencescape/order_template.rb +19 -0
- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
- data/lib/sequencescape/plate_creation.rb +8 -0
- data/lib/sequencescape/plate_purpose.rb +24 -0
- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
- data/lib/sequencescape/project.rb +11 -0
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- data/lib/sequencescape/qc_file.rb +14 -0
- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
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- data/lib/sequencescape/robot.rb +5 -0
- data/lib/sequencescape/sample.rb +51 -0
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- data/lib/sequencescape/transfer_request_collection.rb +8 -0
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- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
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- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
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- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
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<p>This is the Ruby client library for the Sequencescape API.
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<title>Documentation by YARD 0.9.5</title>
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<script type="text/javascript" charset="utf-8">
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var name = match ? match[1] : 'index.html';
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</script>
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<noscript>
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<h1>Oops!</h1>
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<h2>YARD requires JavaScript!</h2>
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</noscript>
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data/doc/index.html
ADDED
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<meta charset="UTF-8">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
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<title>
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File: README
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+
|
|
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|
+
— Documentation by YARD 0.9.5
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+
|
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</title>
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<script type="text/javascript" charset="utf-8">
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relpath = '';
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</script>
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<a href="_index.html">Index</a> »
|
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<span class="title">File: README</span>
|
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+
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|
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|
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<svg width="24" height="24">
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<rect x="0" y="4" width="24" height="4" rx="1" ry="1"></rect>
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<rect x="0" y="12" width="24" height="4" rx="1" ry="1"></rect>
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<iframe id="search_frame" src="class_list.html"></iframe>
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|
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<div id="content"><div id='filecontents'><h1>Sequencescape Client API</h1>
|
|
63
|
+
|
|
64
|
+
<p>This is the Ruby client library for the Sequencescape API.
|
|
65
|
+
Documentation can be found <a href="https://github.com/sanger/sequencescape-client-api/wiki">on the wiki</a>.</p>
|
|
66
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</div></div>
|
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<div id="footer">
|
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|
+
Generated on Wed Nov 16 16:31:13 2016 by
|
|
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|
+
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
|
|
71
|
+
0.9.5 (ruby-2.3.0).
|
|
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|
+
</div>
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</div>
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data/doc/js/app.js
ADDED
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+
(function() {
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|
2
|
+
|
|
3
|
+
var localStorage = {}, sessionStorage = {};
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|
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try { localStorage = window.localStorage; } catch (e) { }
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try { sessionStorage = window.sessionStorage; } catch (e) { }
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|
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|
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+
function createSourceLinks() {
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|
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$('.method_details_list .source_code').
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|
+
before("<span class='showSource'>[<a href='#' class='toggleSource'>View source</a>]</span>");
|
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|
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$('.toggleSource').toggle(function() {
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$(this).parent().nextAll('.source_code').slideDown(100);
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$(this).text("Hide source");
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},
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function() {
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$(this).text("View source");
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});
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}
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function createDefineLinks() {
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}
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},
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function() {
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$(this).parent().toggleClass('showAll');
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$(this).parent().prev().height(tHeight);
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$(this).text("show all");
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});
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}
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$('.full_list_link').click(function() {
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toggleSearchFrame(this, $(this).attr('href'));
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return false;
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});
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if (e.data === 'navEscape') {
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$('#search a').removeClass('active inactive');
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});
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$(window).resize(function() {
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if ($('#search:visible').length === 0) {
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if (frame.attr('src') === link && frame.css('display') !== "none") {
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$('#search a').removeClass('active inactive');
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else {
|
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$(id).addClass('active').removeClass('inactive');
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|
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frame.slideDown(100);
|
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}
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}
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|
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|
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function linkSummaries() {
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$('.summary_signature').click(function() {
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document.location = $(this).find('a').attr('href');
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});
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}
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function summaryToggle() {
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$('.summary_toggle').click(function(e) {
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e.preventDefault();
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|
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});
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|
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|
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|
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if ($('#filecontents h1').length > 1) tags.unshift('h1');
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|
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|
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else {
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|
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|
+
for (i = 0; i < thisTag - lastTag; i++) {
|
|
150
|
+
var tmp = $('<ol/>'); toc.append(tmp); toc = tmp;
|
|
151
|
+
}
|
|
152
|
+
}
|
|
153
|
+
if (thisTag < lastTag) {
|
|
154
|
+
for (i = 0; i < lastTag - thisTag; i++) toc = toc.parent();
|
|
155
|
+
}
|
|
156
|
+
var title = $(this).attr('toc-title');
|
|
157
|
+
if (typeof(title) == "undefined") title = $(this).text();
|
|
158
|
+
toc.append('<li><a href="#' + this.id + '">' + title + '</a></li>');
|
|
159
|
+
lastTag = thisTag;
|
|
160
|
+
});
|
|
161
|
+
if (!show) return;
|
|
162
|
+
html = '<div id="toc"><p class="title hide_toc"><a href="#"><strong>Table of Contents</strong></a></p></div>';
|
|
163
|
+
$('#content').prepend(html);
|
|
164
|
+
$('#toc').append(_toc);
|
|
165
|
+
$('#toc .hide_toc').toggle(function() {
|
|
166
|
+
$('#toc .top').slideUp('fast');
|
|
167
|
+
$('#toc').toggleClass('hidden');
|
|
168
|
+
$('#toc .title small').toggle();
|
|
169
|
+
}, function() {
|
|
170
|
+
$('#toc .top').slideDown('fast');
|
|
171
|
+
$('#toc').toggleClass('hidden');
|
|
172
|
+
$('#toc .title small').toggle();
|
|
173
|
+
});
|
|
174
|
+
}
|
|
175
|
+
|
|
176
|
+
function navResizeFn(e) {
|
|
177
|
+
if (e.which !== 1) {
|
|
178
|
+
navResizeFnStop();
|
|
179
|
+
return;
|
|
180
|
+
}
|
|
181
|
+
|
|
182
|
+
sessionStorage.navWidth = e.pageX.toString();
|
|
183
|
+
$('.nav_wrap').css('width', e.pageX);
|
|
184
|
+
$('.nav_wrap').css('-ms-flex', 'inherit');
|
|
185
|
+
}
|
|
186
|
+
|
|
187
|
+
function navResizeFnStop() {
|
|
188
|
+
$(window).unbind('mousemove', navResizeFn);
|
|
189
|
+
window.removeEventListener('message', navMessageFn, false);
|
|
190
|
+
}
|
|
191
|
+
|
|
192
|
+
function navMessageFn(e) {
|
|
193
|
+
if (e.data.action === 'mousemove') navResizeFn(e.data.event);
|
|
194
|
+
if (e.data.action === 'mouseup') navResizeFnStop();
|
|
195
|
+
}
|
|
196
|
+
|
|
197
|
+
function navResizer() {
|
|
198
|
+
$('#resizer').mousedown(function(e) {
|
|
199
|
+
e.preventDefault();
|
|
200
|
+
$(window).mousemove(navResizeFn);
|
|
201
|
+
window.addEventListener('message', navMessageFn, false);
|
|
202
|
+
});
|
|
203
|
+
$(window).mouseup(navResizeFnStop);
|
|
204
|
+
|
|
205
|
+
if (sessionStorage.navWidth) {
|
|
206
|
+
navResizeFn({which: 1, pageX: parseInt(sessionStorage.navWidth, 10)});
|
|
207
|
+
}
|
|
208
|
+
}
|
|
209
|
+
|
|
210
|
+
function navExpander() {
|
|
211
|
+
var done = false, timer = setTimeout(postMessage, 500);
|
|
212
|
+
function postMessage() {
|
|
213
|
+
if (done) return;
|
|
214
|
+
clearTimeout(timer);
|
|
215
|
+
var opts = { action: 'expand', path: pathId };
|
|
216
|
+
document.getElementById('nav').contentWindow.postMessage(opts, '*');
|
|
217
|
+
done = true;
|
|
218
|
+
}
|
|
219
|
+
|
|
220
|
+
window.addEventListener('message', function(event) {
|
|
221
|
+
if (event.data === 'navReady') postMessage();
|
|
222
|
+
return false;
|
|
223
|
+
}, false);
|
|
224
|
+
}
|
|
225
|
+
|
|
226
|
+
function mainFocus() {
|
|
227
|
+
$('#main')[0].focus();
|
|
228
|
+
}
|
|
229
|
+
|
|
230
|
+
$(document).ready(function() {
|
|
231
|
+
navResizer();
|
|
232
|
+
navExpander();
|
|
233
|
+
createSourceLinks();
|
|
234
|
+
createDefineLinks();
|
|
235
|
+
createFullTreeLinks();
|
|
236
|
+
searchFrameButtons();
|
|
237
|
+
linkSummaries();
|
|
238
|
+
summaryToggle();
|
|
239
|
+
generateTOC();
|
|
240
|
+
mainFocus();
|
|
241
|
+
});
|
|
242
|
+
|
|
243
|
+
})();
|