sequencescape-client-api 0.3.5
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- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +4 -0
- data/README.markdown +4 -0
- data/Rakefile +2 -0
- data/doc/Array.html +192 -0
- data/doc/BaitLibrary.html +139 -0
- data/doc/Hash.html +242 -0
- data/doc/NilClass.html +214 -0
- data/doc/Sequencescape/Api/Actions/ClassActionHelpers.html +213 -0
- data/doc/Sequencescape/Api/Actions/InstanceActionHelpers.html +282 -0
- data/doc/Sequencescape/Api/Actions.html +197 -0
- data/doc/Sequencescape/Api/Associations/Base/InstanceMethods.html +352 -0
- data/doc/Sequencescape/Api/Associations/Base.html +237 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/AssociationProxy.html +332 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour/LoadHandler.html +279 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour.html +432 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/InlineAssociationProxy.html +173 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo.html +212 -0
- data/doc/Sequencescape/Api/Associations/HasMany/AssociationProxy.html +366 -0
- data/doc/Sequencescape/Api/Associations/HasMany/InlineAssociationProxy.html +529 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Json.html +250 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation/CompositeErrors.html +493 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation.html +245 -0
- data/doc/Sequencescape/Api/Associations/HasMany.html +212 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods/CompositeErrors.html +379 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods.html +496 -0
- data/doc/Sequencescape/Api/Associations.html +201 -0
- data/doc/Sequencescape/Api/BasicErrorHandling.html +371 -0
- data/doc/Sequencescape/Api/Composition/Target.html +262 -0
- data/doc/Sequencescape/Api/Composition.html +215 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Actions.html +611 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Helpers.html +233 -0
- data/doc/Sequencescape/Api/ConnectionFactory.html +321 -0
- data/doc/Sequencescape/Api/ErrorHandling/TurnOffValidationOfUuidOnlyRecords.html +189 -0
- data/doc/Sequencescape/Api/ErrorHandling.html +201 -0
- data/doc/Sequencescape/Api/FinderMethods/AllHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods/Caching.html +183 -0
- data/doc/Sequencescape/Api/FinderMethods/Delegation.html +189 -0
- data/doc/Sequencescape/Api/FinderMethods/FindByUuidHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods.html +364 -0
- data/doc/Sequencescape/Api/GeneralError.html +176 -0
- data/doc/Sequencescape/Api/JsonError.html +205 -0
- data/doc/Sequencescape/Api/ModifyingHandler.html +359 -0
- data/doc/Sequencescape/Api/PageOfResults/UpdateHandler.html +279 -0
- data/doc/Sequencescape/Api/PageOfResults.html +611 -0
- data/doc/Sequencescape/Api/Rails/ApplicationController.html +207 -0
- data/doc/Sequencescape/Api/Rails/Resourced.html +269 -0
- data/doc/Sequencescape/Api/Rails.html +117 -0
- data/doc/Sequencescape/Api/Resource/ActiveModel.html +287 -0
- data/doc/Sequencescape/Api/Resource/Attributes/InstanceMethods.html +272 -0
- data/doc/Sequencescape/Api/Resource/Attributes.html +199 -0
- data/doc/Sequencescape/Api/Resource/Groups/InstanceMethods.html +378 -0
- data/doc/Sequencescape/Api/Resource/Groups/Json.html +112 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy/InstanceMethods.html +256 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy.html +177 -0
- data/doc/Sequencescape/Api/Resource/Groups.html +270 -0
- data/doc/Sequencescape/Api/Resource/InstanceMethods.html +344 -0
- data/doc/Sequencescape/Api/Resource/Json/ClassMethods.html +243 -0
- data/doc/Sequencescape/Api/Resource/Json/CoercionHandler.html +279 -0
- data/doc/Sequencescape/Api/Resource/Json.html +405 -0
- data/doc/Sequencescape/Api/Resource/Modifications.html +295 -0
- data/doc/Sequencescape/Api/Resource.html +436 -0
- data/doc/Sequencescape/Api/ResourceInvalid.html +289 -0
- data/doc/Sequencescape/Api/ResourceModelProxy.html +444 -0
- data/doc/Sequencescape/Api/Version1.html +218 -0
- data/doc/Sequencescape/Api/Version2.html +222 -0
- data/doc/Sequencescape/Api.html +704 -0
- data/doc/Sequencescape/Asset.html +262 -0
- data/doc/Sequencescape/AssetAudit.html +258 -0
- data/doc/Sequencescape/AssetGroup.html +258 -0
- data/doc/Sequencescape/BaitLibraryLayout.html +258 -0
- data/doc/Sequencescape/BarcodePrinter.html +258 -0
- data/doc/Sequencescape/BarcodedAsset.html +293 -0
- data/doc/Sequencescape/Batch.html +327 -0
- data/doc/Sequencescape/Behaviour/Barcoded.html +195 -0
- data/doc/Sequencescape/Behaviour/Labeled.html +189 -0
- data/doc/Sequencescape/Behaviour/Qced/QcFile.html +244 -0
- data/doc/Sequencescape/Behaviour/Qced.html +199 -0
- data/doc/Sequencescape/Behaviour/Receptacle/Aliquot.html +258 -0
- data/doc/Sequencescape/Behaviour/Receptacle.html +195 -0
- data/doc/Sequencescape/Behaviour/StateDriven.html +205 -0
- data/doc/Sequencescape/Behaviour.html +130 -0
- data/doc/Sequencescape/BulkTransfer.html +258 -0
- data/doc/Sequencescape/Comment.html +258 -0
- data/doc/Sequencescape/Lane.html +282 -0
- data/doc/Sequencescape/LibraryEvent.html +258 -0
- data/doc/Sequencescape/LibraryTube.html +322 -0
- data/doc/Sequencescape/Lot.html +258 -0
- data/doc/Sequencescape/LotType/LotCreator.html +182 -0
- data/doc/Sequencescape/LotType.html +268 -0
- data/doc/Sequencescape/MultiplexedLibraryTube.html +326 -0
- data/doc/Sequencescape/Order.html +338 -0
- data/doc/Sequencescape/OrderTemplate/OrderCreator.html +182 -0
- data/doc/Sequencescape/OrderTemplate.html +268 -0
- data/doc/Sequencescape/Pipeline.html +258 -0
- data/doc/Sequencescape/Plate/CommentsCreation.html +184 -0
- data/doc/Sequencescape/Plate/CurrentVolumeSubstraction.html +236 -0
- data/doc/Sequencescape/Plate/Pooling.html +249 -0
- data/doc/Sequencescape/Plate/WellStructure.html +313 -0
- data/doc/Sequencescape/Plate.html +446 -0
- data/doc/Sequencescape/PlateConversion.html +258 -0
- data/doc/Sequencescape/PlateCreation.html +258 -0
- data/doc/Sequencescape/PlatePurpose/PlateCreation.html +186 -0
- data/doc/Sequencescape/PlatePurpose.html +268 -0
- data/doc/Sequencescape/PlateTemplate.html +282 -0
- data/doc/Sequencescape/PooledPlateCreation.html +258 -0
- data/doc/Sequencescape/Project.html +258 -0
- data/doc/Sequencescape/QcDecision.html +258 -0
- data/doc/Sequencescape/QcFile.html +327 -0
- data/doc/Sequencescape/Qcable.html +258 -0
- data/doc/Sequencescape/QcableCreator.html +258 -0
- data/doc/Sequencescape/Request.html +258 -0
- data/doc/Sequencescape/Robot.html +258 -0
- data/doc/Sequencescape/Sample.html +258 -0
- data/doc/Sequencescape/SampleTube.html +318 -0
- data/doc/Sequencescape/Search/BaseHandler.html +234 -0
- data/doc/Sequencescape/Search/MultipleResultHandler.html +276 -0
- data/doc/Sequencescape/Search/SingleResultHandler.html +303 -0
- data/doc/Sequencescape/Search.html +431 -0
- data/doc/Sequencescape/SpecificTubeCreation.html +258 -0
- data/doc/Sequencescape/Stamp.html +258 -0
- data/doc/Sequencescape/StateChange.html +258 -0
- data/doc/Sequencescape/Study.html +258 -0
- data/doc/Sequencescape/Submission.html +258 -0
- data/doc/Sequencescape/SubmissionPool.html +258 -0
- data/doc/Sequencescape/Tag/Group.html +219 -0
- data/doc/Sequencescape/Tag.html +149 -0
- data/doc/Sequencescape/Tag2Layout.html +258 -0
- data/doc/Sequencescape/Tag2LayoutTemplate.html +258 -0
- data/doc/Sequencescape/TagGroup.html +258 -0
- data/doc/Sequencescape/TagLayout.html +258 -0
- data/doc/Sequencescape/TagLayoutTemplate.html +258 -0
- data/doc/Sequencescape/Template.html +258 -0
- data/doc/Sequencescape/Transfer.html +258 -0
- data/doc/Sequencescape/TransferTemplate.html +258 -0
- data/doc/Sequencescape/Tube.html +319 -0
- data/doc/Sequencescape/TubeCreation.html +258 -0
- data/doc/Sequencescape/TubeFromTubeCreation.html +258 -0
- data/doc/Sequencescape/TubePurpose/TubeCreation.html +186 -0
- data/doc/Sequencescape/TubePurpose.html +268 -0
- data/doc/Sequencescape/User.html +258 -0
- data/doc/Sequencescape/VolumeUpdate.html +258 -0
- data/doc/Sequencescape/Well.html +362 -0
- data/doc/Sequencescape.html +121 -0
- data/doc/_index.html +1248 -0
- data/doc/class_list.html +51 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +58 -0
- data/doc/css/style.css +481 -0
- data/doc/file.README.html +76 -0
- data/doc/file_list.html +56 -0
- data/doc/frames.html +17 -0
- data/doc/index.html +76 -0
- data/doc/js/app.js +243 -0
- data/doc/js/full_list.js +216 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1411 -0
- data/doc/top-level-namespace.html +114 -0
- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
- data/lib/sequencescape/order.rb +13 -0
- data/lib/sequencescape/order_template.rb +19 -0
- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
- data/lib/sequencescape/plate_creation.rb +8 -0
- data/lib/sequencescape/plate_purpose.rb +24 -0
- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
- data/lib/sequencescape/project.rb +11 -0
- data/lib/sequencescape/qc_decision.rb +9 -0
- data/lib/sequencescape/qc_file.rb +14 -0
- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
- data/lib/sequencescape/request.rb +16 -0
- data/lib/sequencescape/robot.rb +5 -0
- data/lib/sequencescape/sample.rb +51 -0
- data/lib/sequencescape/sample_tube.rb +7 -0
- data/lib/sequencescape/search.rb +80 -0
- data/lib/sequencescape/specific_tube_creation.rb +8 -0
- data/lib/sequencescape/stamp.rb +9 -0
- data/lib/sequencescape/state_change.rb +11 -0
- data/lib/sequencescape/study.rb +14 -0
- data/lib/sequencescape/submission.rb +16 -0
- data/lib/sequencescape/submission_pool.rb +7 -0
- data/lib/sequencescape/tag.rb +14 -0
- data/lib/sequencescape/tag2_layout.rb +10 -0
- data/lib/sequencescape/tag2_layout_template.rb +9 -0
- data/lib/sequencescape/tag_group.rb +4 -0
- data/lib/sequencescape/tag_layout.rb +10 -0
- data/lib/sequencescape/tag_layout_template.rb +15 -0
- data/lib/sequencescape/template.rb +6 -0
- data/lib/sequencescape/transfer.rb +9 -0
- data/lib/sequencescape/transfer_request.rb +12 -0
- data/lib/sequencescape/transfer_request_collection.rb +8 -0
- data/lib/sequencescape/transfer_template.rb +9 -0
- data/lib/sequencescape/tube.rb +26 -0
- data/lib/sequencescape/tube_creation.rb +8 -0
- data/lib/sequencescape/tube_from_tube_creation.rb +8 -0
- data/lib/sequencescape/tube_purpose.rb +24 -0
- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
- data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
- data/lib/sequencescape-api/associations/has_many.rb +123 -0
- data/lib/sequencescape-api/associations.rb +112 -0
- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
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module Sequencescape::Api::Associations::Base::InstanceMethods
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def self.included(base)
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base.class_eval do
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class_attribute :association, :options
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class_attribute :default_attributes_if_missing, :instance_writer => false
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attr_reader :model
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delegate :read_timeout, :to => :@owner
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private :model
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def api(*args, &block)
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# TODO: Consider updating
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@owner.__send__(:api, *args, &block)
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end
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private :api
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end
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end
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def initialize(owner, json = nil)
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@owner = owner
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@attributes = json.nil? ? owner.attributes_for(association, default_attributes_if_missing) : attributes_from(json)
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@model = api.model(options[:class_name] || association)
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end
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def new(*args, &block)
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model.new(api, *args, &block)
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end
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private :new
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# We can be passed several different types of information as though it was JSON:
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#
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# 1. It could be a string, in which case we'll assume it's a UUID
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# 2. It could be an instance of the model we're expected to reference, in which case we take it's attributes
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# 3. It could be an association like us that references the same model, in which case we take it's attributes
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# 4. Finally it could actually be the JSON!
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def attributes_from(json)
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case
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when json.is_a?(String) then { uuid: json, uuid_only: true }
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when json.is_a?(Hash) then json
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when json.respond_to?(:map) then json.map(&method(:attributes_from))
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when json.is_a?(Sequencescape::Api::Resource) then json.as_json(:force => true, :action => :update, :root => false, :uuid => true)
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when json.is_a?(Sequencescape::Api::Associations::Base) then json.as_json(:force => true, :action => :update)
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else raise json.inspect
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end
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end
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private :attributes_from
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def proxy_present?
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true
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end
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end
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class NilClass
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def proxy_present?
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55
|
+
false
|
56
|
+
end
|
57
|
+
end
|
@@ -0,0 +1,15 @@
|
|
1
|
+
require 'ostruct'
|
2
|
+
|
3
|
+
class Sequencescape::Api::Associations::Base
|
4
|
+
require 'sequencescape-api/associations/base/instance_methods'
|
5
|
+
|
6
|
+
include InstanceMethods
|
7
|
+
|
8
|
+
def initialize(owner, json = nil)
|
9
|
+
super
|
10
|
+
@actions = OpenStruct.new(@attributes.delete('actions'))
|
11
|
+
end
|
12
|
+
|
13
|
+
attr_reader :actions
|
14
|
+
private :actions
|
15
|
+
end
|
@@ -0,0 +1,127 @@
|
|
1
|
+
require 'sequencescape-api/associations/base'
|
2
|
+
require 'sequencescape-api/error_handling'
|
3
|
+
|
4
|
+
module Sequencescape::Api::Associations::BelongsTo
|
5
|
+
module CommonBehaviour
|
6
|
+
def self.included(base)
|
7
|
+
base.class_eval do
|
8
|
+
include Sequencescape::Api::ErrorHandling
|
9
|
+
end
|
10
|
+
end
|
11
|
+
|
12
|
+
def initialize(*args, &block)
|
13
|
+
super
|
14
|
+
@object = new(@attributes, false)
|
15
|
+
end
|
16
|
+
|
17
|
+
def update_from_json(json)
|
18
|
+
@object.send(:update_from_json, json, false)
|
19
|
+
end
|
20
|
+
private :update_from_json
|
21
|
+
|
22
|
+
def respond_to?(name, include_private = false)
|
23
|
+
# One of our methods, or an eager loaded attribute, or the object needs to be loaded & checked
|
24
|
+
super or is_handled_by_object_instance?(name) or object.respond_to?(name, include_private)
|
25
|
+
end
|
26
|
+
|
27
|
+
def method_missing(name, *args, &block)
|
28
|
+
target = is_handled_by_object_instance?(name) ? @object : object
|
29
|
+
target.send(name, *args, &block)
|
30
|
+
end
|
31
|
+
protected :method_missing
|
32
|
+
|
33
|
+
def is_handled_by_object_instance?(name)
|
34
|
+
return false if @object.nil?
|
35
|
+
|
36
|
+
# TODO: I really hate special cases!
|
37
|
+
case
|
38
|
+
when name.to_sym == :uuid then true
|
39
|
+
when @object.eager_loaded_attribute?(name) then true
|
40
|
+
when @object.is_association?(name) then true
|
41
|
+
else false
|
42
|
+
end
|
43
|
+
end
|
44
|
+
private :is_handled_by_object_instance?
|
45
|
+
|
46
|
+
class LoadHandler
|
47
|
+
include Sequencescape::Api::BasicErrorHandling
|
48
|
+
|
49
|
+
def initialize(owner)
|
50
|
+
@owner = owner
|
51
|
+
end
|
52
|
+
|
53
|
+
delegate :loaded, :to => :@owner
|
54
|
+
private :loaded
|
55
|
+
|
56
|
+
def new(*args, &block)
|
57
|
+
# TODO: Consider updating
|
58
|
+
@owner.__send__(:new, *args, &block)
|
59
|
+
end
|
60
|
+
private :new
|
61
|
+
|
62
|
+
def success(json)
|
63
|
+
new(json, true).tap { loaded = true }
|
64
|
+
end
|
65
|
+
end
|
66
|
+
|
67
|
+
def object
|
68
|
+
@object ||= api.read(actions.read, LoadHandler.new(self))
|
69
|
+
@object
|
70
|
+
end
|
71
|
+
private :object
|
72
|
+
|
73
|
+
def as_json(options = nil)
|
74
|
+
@object.as_json({ :root => false, :uuid => false }.reverse_merge(options || {}))
|
75
|
+
end
|
76
|
+
end
|
77
|
+
|
78
|
+
class InlineAssociationProxy < Sequencescape::Api::Associations::Base
|
79
|
+
include Sequencescape::Api::Associations::BelongsTo::CommonBehaviour
|
80
|
+
end
|
81
|
+
|
82
|
+
class AssociationProxy < Sequencescape::Api::Associations::Base
|
83
|
+
include Sequencescape::Api::Associations::BelongsTo::CommonBehaviour
|
84
|
+
|
85
|
+
self.default_attributes_if_missing = {}
|
86
|
+
|
87
|
+
def initialize(*args, &block)
|
88
|
+
super
|
89
|
+
@loaded = false
|
90
|
+
end
|
91
|
+
|
92
|
+
attr_writer :loaded
|
93
|
+
private :loaded=
|
94
|
+
|
95
|
+
def object
|
96
|
+
@object = nil unless @loaded
|
97
|
+
super
|
98
|
+
end
|
99
|
+
private :object
|
100
|
+
|
101
|
+
def uuid_only?
|
102
|
+
@object.__send__(:uuid_only?)
|
103
|
+
end
|
104
|
+
|
105
|
+
delegate :hash, to: :uuid
|
106
|
+
|
107
|
+
def eql?(other)
|
108
|
+
uuid == other.uuid
|
109
|
+
end
|
110
|
+
end
|
111
|
+
|
112
|
+
def belongs_to(association, options = {}, &block)
|
113
|
+
association = association.to_sym
|
114
|
+
|
115
|
+
proxy = Class.new(
|
116
|
+
case options[:disposition].try(:to_sym)
|
117
|
+
when :inline then InlineAssociationProxy
|
118
|
+
else AssociationProxy
|
119
|
+
end
|
120
|
+
)
|
121
|
+
proxy.association = association
|
122
|
+
proxy.options = options
|
123
|
+
proxy.instance_eval(&block) if block_given?
|
124
|
+
|
125
|
+
association_methods(association, :belongs_to, proxy)
|
126
|
+
end
|
127
|
+
end
|
@@ -0,0 +1,10 @@
|
|
1
|
+
module Sequencescape::Api::Associations::HasMany::Json
|
2
|
+
def self.included(base)
|
3
|
+
base.default_attributes_if_missing = []
|
4
|
+
end
|
5
|
+
|
6
|
+
def as_json(options = nil)
|
7
|
+
options = { :root => false, :uuid => true }.reverse_merge(options || {})
|
8
|
+
all.map { |o| o.as_json(options) }.compact
|
9
|
+
end
|
10
|
+
end
|
@@ -0,0 +1,37 @@
|
|
1
|
+
module Sequencescape::Api::Associations::HasMany::Validation
|
2
|
+
def run_validations!
|
3
|
+
# NOTE: Don't use all? here because it fails early and we need to see all validation errors
|
4
|
+
all.inject(true) { |state, object| object.run_validations! and state }
|
5
|
+
end
|
6
|
+
|
7
|
+
def errors
|
8
|
+
CompositeErrors.new(self)
|
9
|
+
end
|
10
|
+
|
11
|
+
class CompositeErrors
|
12
|
+
def initialize(association)
|
13
|
+
@association = association
|
14
|
+
end
|
15
|
+
|
16
|
+
def full_messages
|
17
|
+
map_errors(&:full_messages).flatten
|
18
|
+
end
|
19
|
+
|
20
|
+
def empty?
|
21
|
+
map_errors(&:empty?).all?
|
22
|
+
end
|
23
|
+
|
24
|
+
def clear
|
25
|
+
map_errors(&:clear)
|
26
|
+
end
|
27
|
+
|
28
|
+
def [](field)
|
29
|
+
map_errors { |errors| errors[field] }.flatten
|
30
|
+
end
|
31
|
+
|
32
|
+
def map_errors(&block)
|
33
|
+
@association.map(&:errors)
|
34
|
+
.map(&block)
|
35
|
+
end
|
36
|
+
end
|
37
|
+
end
|
@@ -0,0 +1,123 @@
|
|
1
|
+
require 'sequencescape-api/finder_methods'
|
2
|
+
require 'sequencescape-api/associations/base'
|
3
|
+
require 'sequencescape-api/actions'
|
4
|
+
|
5
|
+
module Sequencescape::Api::Associations::HasMany
|
6
|
+
require 'sequencescape-api/associations/has_many/json'
|
7
|
+
require 'sequencescape-api/associations/has_many/validation'
|
8
|
+
|
9
|
+
class AssociationProxy < ::Sequencescape::Api::Associations::Base
|
10
|
+
include ::Sequencescape::Api::FinderMethods
|
11
|
+
include ::Sequencescape::Api::FinderMethods::Caching
|
12
|
+
extend ::Sequencescape::Api::Actions
|
13
|
+
include ::Sequencescape::Api::Associations::HasMany::Json
|
14
|
+
include ::Sequencescape::Api::Associations::HasMany::Validation
|
15
|
+
include Enumerable
|
16
|
+
|
17
|
+
def size
|
18
|
+
return @attributes['size'] if api.capabilities.size_in_pages?
|
19
|
+
all.size
|
20
|
+
end
|
21
|
+
|
22
|
+
def empty?
|
23
|
+
return @attributes['size'].zero? if api.capabilities.size_in_pages?
|
24
|
+
all.empty?
|
25
|
+
end
|
26
|
+
|
27
|
+
def present?
|
28
|
+
!empty?
|
29
|
+
end
|
30
|
+
|
31
|
+
def initialize(owner, json = nil)
|
32
|
+
super
|
33
|
+
@cached_all = case
|
34
|
+
when json.is_a?(Array) then json.map {|js| new_from(js) }
|
35
|
+
else nil
|
36
|
+
end
|
37
|
+
end
|
38
|
+
|
39
|
+
def new_from(json)
|
40
|
+
case
|
41
|
+
when json.is_a?(String) then new(uuid: json) # We've recieved an array of strings, prob. uuids
|
42
|
+
when json.is_a?(Hash) then new(json)
|
43
|
+
else json
|
44
|
+
end
|
45
|
+
end
|
46
|
+
|
47
|
+
def update_from_json(_)
|
48
|
+
@cached_all = nil
|
49
|
+
end
|
50
|
+
end
|
51
|
+
|
52
|
+
class InlineAssociationProxy
|
53
|
+
include Enumerable
|
54
|
+
include ::Sequencescape::Api::FinderMethods::Delegation
|
55
|
+
include ::Sequencescape::Api::Associations::Base::InstanceMethods
|
56
|
+
include ::Sequencescape::Api::Associations::HasMany::Json
|
57
|
+
include ::Sequencescape::Api::Associations::HasMany::Validation
|
58
|
+
|
59
|
+
def initialize(owner, json = nil)
|
60
|
+
super
|
61
|
+
@objects =
|
62
|
+
case
|
63
|
+
when @attributes.is_a?(Array) then @attributes.map(&method(:new))
|
64
|
+
when @attributes.is_a?(Hash) then @attributes.map { |uuid, json| new(json.merge('uuid' => uuid)) }
|
65
|
+
else raise StandardError, "Cannot handle has_many JSON: #{json.inspect}"
|
66
|
+
end
|
67
|
+
end
|
68
|
+
|
69
|
+
def update_from_json(json)
|
70
|
+
case
|
71
|
+
when json.is_a?(Array) then @objects = json.map(&method(:new))
|
72
|
+
when json.is_a?(Hash) then update_objects_from_json(json)
|
73
|
+
else raise StandardError, "Cannot handle has_many JSON: #{json.inspect}"
|
74
|
+
end
|
75
|
+
end
|
76
|
+
private :update_from_json
|
77
|
+
|
78
|
+
def update_objects_from_json(json)
|
79
|
+
all.each do |object|
|
80
|
+
object.send(:update_from_json, json[object.uuid]) if json.key?(object.uuid)
|
81
|
+
end
|
82
|
+
end
|
83
|
+
private :update_objects_from_json
|
84
|
+
|
85
|
+
def find(uuid)
|
86
|
+
@objects.detect { |o| o.uuid == uuid }
|
87
|
+
end
|
88
|
+
|
89
|
+
def all
|
90
|
+
@objects
|
91
|
+
end
|
92
|
+
|
93
|
+
def each_page(&block)
|
94
|
+
yield(@objects)
|
95
|
+
end
|
96
|
+
|
97
|
+
def new(json, &block)
|
98
|
+
super(json, false, &block)
|
99
|
+
end
|
100
|
+
private :new
|
101
|
+
|
102
|
+
# We are changed if any of our objects have been changed.
|
103
|
+
def changed?
|
104
|
+
@objects.any?(&:changed?)
|
105
|
+
end
|
106
|
+
end
|
107
|
+
|
108
|
+
def has_many(association, options = {}, &block)
|
109
|
+
association = association.to_sym
|
110
|
+
|
111
|
+
proxy = Class.new(
|
112
|
+
case options[:disposition].try(:to_sym)
|
113
|
+
when :inline then InlineAssociationProxy
|
114
|
+
else AssociationProxy
|
115
|
+
end
|
116
|
+
)
|
117
|
+
proxy.association = association
|
118
|
+
proxy.options = options
|
119
|
+
proxy.instance_eval(&block) if block_given?
|
120
|
+
|
121
|
+
association_methods(association, :has_many, proxy)
|
122
|
+
end
|
123
|
+
end
|
@@ -0,0 +1,112 @@
|
|
1
|
+
require 'active_model/errors'
|
2
|
+
|
3
|
+
module Sequencescape::Api::Associations
|
4
|
+
def self.extended(base)
|
5
|
+
base.class_eval do
|
6
|
+
include InstanceMethods
|
7
|
+
extend HasMany
|
8
|
+
extend BelongsTo
|
9
|
+
end
|
10
|
+
end
|
11
|
+
|
12
|
+
def association_methods(association, type, proxy)
|
13
|
+
proxy_class_name = [ association, type, 'proxy'].join('_').classify
|
14
|
+
const_set(proxy_class_name.to_sym, proxy)
|
15
|
+
|
16
|
+
line = __LINE__ + 1
|
17
|
+
class_eval(%Q{
|
18
|
+
def #{association}(reload = false)
|
19
|
+
associations[#{association.inspect}] = nil if !!reload
|
20
|
+
associations[#{association.inspect}] ||= #{proxy_class_name}.new(self)
|
21
|
+
associations[#{association.inspect}]
|
22
|
+
end
|
23
|
+
|
24
|
+
def #{association}=(json)
|
25
|
+
association = associations[#{association.inspect}]
|
26
|
+
if association.proxy_present?
|
27
|
+
association.send(:update_from_json, json)
|
28
|
+
else
|
29
|
+
associations[#{association.inspect}] = #{proxy_class_name}.new(self, json)
|
30
|
+
end
|
31
|
+
end
|
32
|
+
private #{association.inspect}=
|
33
|
+
|
34
|
+
def #{association}?
|
35
|
+
attributes_for?(#{association.inspect})
|
36
|
+
end
|
37
|
+
}, __FILE__, line)
|
38
|
+
end
|
39
|
+
private :association_methods
|
40
|
+
|
41
|
+
module InstanceMethods
|
42
|
+
def initialize(*args, &block)
|
43
|
+
@associations, @errors = {}, nil
|
44
|
+
super
|
45
|
+
end
|
46
|
+
|
47
|
+
attr_reader :associations
|
48
|
+
private :associations
|
49
|
+
|
50
|
+
def is_association?(name)
|
51
|
+
associations.key?(name.to_sym)
|
52
|
+
end
|
53
|
+
|
54
|
+
def attributes_for(path, default_value_if_missing = nil)
|
55
|
+
attributes_from_path(path, default_value_if_missing) or
|
56
|
+
raise Sequencescape::Api::JsonError.new(path.to_s, self)
|
57
|
+
end
|
58
|
+
|
59
|
+
def attributes_for?(path)
|
60
|
+
!!attributes_from_path(path)
|
61
|
+
end
|
62
|
+
|
63
|
+
def attributes_from_path(path, default_value_if_missing = nil)
|
64
|
+
path.to_s.split('.').inject(attributes) { |k,v| k.try(:[], v) } || default_value_if_missing
|
65
|
+
end
|
66
|
+
private :attributes_from_path
|
67
|
+
|
68
|
+
def run_validations!
|
69
|
+
our_result, their_result = super, @associations.values.all?(&:run_validations!)
|
70
|
+
our_result and their_result
|
71
|
+
end
|
72
|
+
|
73
|
+
class CompositeErrors < ::ActiveModel::Errors
|
74
|
+
def [](field)
|
75
|
+
association, *subfield = field.to_s.split('.')
|
76
|
+
errors_from_association = associations[association.to_sym].try(:errors).try(:[], subfield.join('.'))
|
77
|
+
errors_from_association.blank? ? super : errors_from_association
|
78
|
+
end
|
79
|
+
|
80
|
+
def full_messages
|
81
|
+
super.concat(association_errors.map(&:full_messages)).flatten
|
82
|
+
end
|
83
|
+
|
84
|
+
def empty?
|
85
|
+
super and association_errors.all?(&:empty?)
|
86
|
+
end
|
87
|
+
|
88
|
+
def clear
|
89
|
+
association_errors.map(&:clear)
|
90
|
+
super
|
91
|
+
end
|
92
|
+
|
93
|
+
def associations(*args, &block)
|
94
|
+
# TODO: Consider updating
|
95
|
+
@base.__send__(:associations, *args, &block)
|
96
|
+
end
|
97
|
+
private :associations
|
98
|
+
|
99
|
+
def association_errors
|
100
|
+
associations.values.map(&:errors)
|
101
|
+
end
|
102
|
+
private :association_errors
|
103
|
+
end
|
104
|
+
|
105
|
+
def errors
|
106
|
+
@errors ||= CompositeErrors.new(self)
|
107
|
+
end
|
108
|
+
end
|
109
|
+
end
|
110
|
+
|
111
|
+
require 'sequencescape-api/associations/has_many'
|
112
|
+
require 'sequencescape-api/associations/belongs_to'
|