sequencescape-client-api 0.3.5

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Files changed (313) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +7 -0
  3. data/.rspec +1 -0
  4. data/.rvmrc +52 -0
  5. data/.yardoc/checksums +96 -0
  6. data/.yardoc/complete +0 -0
  7. data/.yardoc/object_types +0 -0
  8. data/.yardoc/objects/root.dat +0 -0
  9. data/.yardoc/proxy_types +0 -0
  10. data/Gemfile +4 -0
  11. data/README.markdown +4 -0
  12. data/Rakefile +2 -0
  13. data/doc/Array.html +192 -0
  14. data/doc/BaitLibrary.html +139 -0
  15. data/doc/Hash.html +242 -0
  16. data/doc/NilClass.html +214 -0
  17. data/doc/Sequencescape/Api/Actions/ClassActionHelpers.html +213 -0
  18. data/doc/Sequencescape/Api/Actions/InstanceActionHelpers.html +282 -0
  19. data/doc/Sequencescape/Api/Actions.html +197 -0
  20. data/doc/Sequencescape/Api/Associations/Base/InstanceMethods.html +352 -0
  21. data/doc/Sequencescape/Api/Associations/Base.html +237 -0
  22. data/doc/Sequencescape/Api/Associations/BelongsTo/AssociationProxy.html +332 -0
  23. data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour/LoadHandler.html +279 -0
  24. data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour.html +432 -0
  25. data/doc/Sequencescape/Api/Associations/BelongsTo/InlineAssociationProxy.html +173 -0
  26. data/doc/Sequencescape/Api/Associations/BelongsTo.html +212 -0
  27. data/doc/Sequencescape/Api/Associations/HasMany/AssociationProxy.html +366 -0
  28. data/doc/Sequencescape/Api/Associations/HasMany/InlineAssociationProxy.html +529 -0
  29. data/doc/Sequencescape/Api/Associations/HasMany/Json.html +250 -0
  30. data/doc/Sequencescape/Api/Associations/HasMany/Validation/CompositeErrors.html +493 -0
  31. data/doc/Sequencescape/Api/Associations/HasMany/Validation.html +245 -0
  32. data/doc/Sequencescape/Api/Associations/HasMany.html +212 -0
  33. data/doc/Sequencescape/Api/Associations/InstanceMethods/CompositeErrors.html +379 -0
  34. data/doc/Sequencescape/Api/Associations/InstanceMethods.html +496 -0
  35. data/doc/Sequencescape/Api/Associations.html +201 -0
  36. data/doc/Sequencescape/Api/BasicErrorHandling.html +371 -0
  37. data/doc/Sequencescape/Api/Composition/Target.html +262 -0
  38. data/doc/Sequencescape/Api/Composition.html +215 -0
  39. data/doc/Sequencescape/Api/ConnectionFactory/Actions.html +611 -0
  40. data/doc/Sequencescape/Api/ConnectionFactory/Helpers.html +233 -0
  41. data/doc/Sequencescape/Api/ConnectionFactory.html +321 -0
  42. data/doc/Sequencescape/Api/ErrorHandling/TurnOffValidationOfUuidOnlyRecords.html +189 -0
  43. data/doc/Sequencescape/Api/ErrorHandling.html +201 -0
  44. data/doc/Sequencescape/Api/FinderMethods/AllHandler.html +279 -0
  45. data/doc/Sequencescape/Api/FinderMethods/Caching.html +183 -0
  46. data/doc/Sequencescape/Api/FinderMethods/Delegation.html +189 -0
  47. data/doc/Sequencescape/Api/FinderMethods/FindByUuidHandler.html +279 -0
  48. data/doc/Sequencescape/Api/FinderMethods.html +364 -0
  49. data/doc/Sequencescape/Api/GeneralError.html +176 -0
  50. data/doc/Sequencescape/Api/JsonError.html +205 -0
  51. data/doc/Sequencescape/Api/ModifyingHandler.html +359 -0
  52. data/doc/Sequencescape/Api/PageOfResults/UpdateHandler.html +279 -0
  53. data/doc/Sequencescape/Api/PageOfResults.html +611 -0
  54. data/doc/Sequencescape/Api/Rails/ApplicationController.html +207 -0
  55. data/doc/Sequencescape/Api/Rails/Resourced.html +269 -0
  56. data/doc/Sequencescape/Api/Rails.html +117 -0
  57. data/doc/Sequencescape/Api/Resource/ActiveModel.html +287 -0
  58. data/doc/Sequencescape/Api/Resource/Attributes/InstanceMethods.html +272 -0
  59. data/doc/Sequencescape/Api/Resource/Attributes.html +199 -0
  60. data/doc/Sequencescape/Api/Resource/Groups/InstanceMethods.html +378 -0
  61. data/doc/Sequencescape/Api/Resource/Groups/Json.html +112 -0
  62. data/doc/Sequencescape/Api/Resource/Groups/Proxy/InstanceMethods.html +256 -0
  63. data/doc/Sequencescape/Api/Resource/Groups/Proxy.html +177 -0
  64. data/doc/Sequencescape/Api/Resource/Groups.html +270 -0
  65. data/doc/Sequencescape/Api/Resource/InstanceMethods.html +344 -0
  66. data/doc/Sequencescape/Api/Resource/Json/ClassMethods.html +243 -0
  67. data/doc/Sequencescape/Api/Resource/Json/CoercionHandler.html +279 -0
  68. data/doc/Sequencescape/Api/Resource/Json.html +405 -0
  69. data/doc/Sequencescape/Api/Resource/Modifications.html +295 -0
  70. data/doc/Sequencescape/Api/Resource.html +436 -0
  71. data/doc/Sequencescape/Api/ResourceInvalid.html +289 -0
  72. data/doc/Sequencescape/Api/ResourceModelProxy.html +444 -0
  73. data/doc/Sequencescape/Api/Version1.html +218 -0
  74. data/doc/Sequencescape/Api/Version2.html +222 -0
  75. data/doc/Sequencescape/Api.html +704 -0
  76. data/doc/Sequencescape/Asset.html +262 -0
  77. data/doc/Sequencescape/AssetAudit.html +258 -0
  78. data/doc/Sequencescape/AssetGroup.html +258 -0
  79. data/doc/Sequencescape/BaitLibraryLayout.html +258 -0
  80. data/doc/Sequencescape/BarcodePrinter.html +258 -0
  81. data/doc/Sequencescape/BarcodedAsset.html +293 -0
  82. data/doc/Sequencescape/Batch.html +327 -0
  83. data/doc/Sequencescape/Behaviour/Barcoded.html +195 -0
  84. data/doc/Sequencescape/Behaviour/Labeled.html +189 -0
  85. data/doc/Sequencescape/Behaviour/Qced/QcFile.html +244 -0
  86. data/doc/Sequencescape/Behaviour/Qced.html +199 -0
  87. data/doc/Sequencescape/Behaviour/Receptacle/Aliquot.html +258 -0
  88. data/doc/Sequencescape/Behaviour/Receptacle.html +195 -0
  89. data/doc/Sequencescape/Behaviour/StateDriven.html +205 -0
  90. data/doc/Sequencescape/Behaviour.html +130 -0
  91. data/doc/Sequencescape/BulkTransfer.html +258 -0
  92. data/doc/Sequencescape/Comment.html +258 -0
  93. data/doc/Sequencescape/Lane.html +282 -0
  94. data/doc/Sequencescape/LibraryEvent.html +258 -0
  95. data/doc/Sequencescape/LibraryTube.html +322 -0
  96. data/doc/Sequencescape/Lot.html +258 -0
  97. data/doc/Sequencescape/LotType/LotCreator.html +182 -0
  98. data/doc/Sequencescape/LotType.html +268 -0
  99. data/doc/Sequencescape/MultiplexedLibraryTube.html +326 -0
  100. data/doc/Sequencescape/Order.html +338 -0
  101. data/doc/Sequencescape/OrderTemplate/OrderCreator.html +182 -0
  102. data/doc/Sequencescape/OrderTemplate.html +268 -0
  103. data/doc/Sequencescape/Pipeline.html +258 -0
  104. data/doc/Sequencescape/Plate/CommentsCreation.html +184 -0
  105. data/doc/Sequencescape/Plate/CurrentVolumeSubstraction.html +236 -0
  106. data/doc/Sequencescape/Plate/Pooling.html +249 -0
  107. data/doc/Sequencescape/Plate/WellStructure.html +313 -0
  108. data/doc/Sequencescape/Plate.html +446 -0
  109. data/doc/Sequencescape/PlateConversion.html +258 -0
  110. data/doc/Sequencescape/PlateCreation.html +258 -0
  111. data/doc/Sequencescape/PlatePurpose/PlateCreation.html +186 -0
  112. data/doc/Sequencescape/PlatePurpose.html +268 -0
  113. data/doc/Sequencescape/PlateTemplate.html +282 -0
  114. data/doc/Sequencescape/PooledPlateCreation.html +258 -0
  115. data/doc/Sequencescape/Project.html +258 -0
  116. data/doc/Sequencescape/QcDecision.html +258 -0
  117. data/doc/Sequencescape/QcFile.html +327 -0
  118. data/doc/Sequencescape/Qcable.html +258 -0
  119. data/doc/Sequencescape/QcableCreator.html +258 -0
  120. data/doc/Sequencescape/Request.html +258 -0
  121. data/doc/Sequencescape/Robot.html +258 -0
  122. data/doc/Sequencescape/Sample.html +258 -0
  123. data/doc/Sequencescape/SampleTube.html +318 -0
  124. data/doc/Sequencescape/Search/BaseHandler.html +234 -0
  125. data/doc/Sequencescape/Search/MultipleResultHandler.html +276 -0
  126. data/doc/Sequencescape/Search/SingleResultHandler.html +303 -0
  127. data/doc/Sequencescape/Search.html +431 -0
  128. data/doc/Sequencescape/SpecificTubeCreation.html +258 -0
  129. data/doc/Sequencescape/Stamp.html +258 -0
  130. data/doc/Sequencescape/StateChange.html +258 -0
  131. data/doc/Sequencescape/Study.html +258 -0
  132. data/doc/Sequencescape/Submission.html +258 -0
  133. data/doc/Sequencescape/SubmissionPool.html +258 -0
  134. data/doc/Sequencescape/Tag/Group.html +219 -0
  135. data/doc/Sequencescape/Tag.html +149 -0
  136. data/doc/Sequencescape/Tag2Layout.html +258 -0
  137. data/doc/Sequencescape/Tag2LayoutTemplate.html +258 -0
  138. data/doc/Sequencescape/TagGroup.html +258 -0
  139. data/doc/Sequencescape/TagLayout.html +258 -0
  140. data/doc/Sequencescape/TagLayoutTemplate.html +258 -0
  141. data/doc/Sequencescape/Template.html +258 -0
  142. data/doc/Sequencescape/Transfer.html +258 -0
  143. data/doc/Sequencescape/TransferTemplate.html +258 -0
  144. data/doc/Sequencescape/Tube.html +319 -0
  145. data/doc/Sequencescape/TubeCreation.html +258 -0
  146. data/doc/Sequencescape/TubeFromTubeCreation.html +258 -0
  147. data/doc/Sequencescape/TubePurpose/TubeCreation.html +186 -0
  148. data/doc/Sequencescape/TubePurpose.html +268 -0
  149. data/doc/Sequencescape/User.html +258 -0
  150. data/doc/Sequencescape/VolumeUpdate.html +258 -0
  151. data/doc/Sequencescape/Well.html +362 -0
  152. data/doc/Sequencescape.html +121 -0
  153. data/doc/_index.html +1248 -0
  154. data/doc/class_list.html +51 -0
  155. data/doc/css/common.css +1 -0
  156. data/doc/css/full_list.css +58 -0
  157. data/doc/css/style.css +481 -0
  158. data/doc/file.README.html +76 -0
  159. data/doc/file_list.html +56 -0
  160. data/doc/frames.html +17 -0
  161. data/doc/index.html +76 -0
  162. data/doc/js/app.js +243 -0
  163. data/doc/js/full_list.js +216 -0
  164. data/doc/js/jquery.js +4 -0
  165. data/doc/method_list.html +1411 -0
  166. data/doc/top-level-namespace.html +114 -0
  167. data/lib/sequencescape/asset.rb +10 -0
  168. data/lib/sequencescape/asset_audit.rb +7 -0
  169. data/lib/sequencescape/asset_group.rb +9 -0
  170. data/lib/sequencescape/bait_library.rb +14 -0
  171. data/lib/sequencescape/bait_library_layout.rb +9 -0
  172. data/lib/sequencescape/barcode_printer.rb +13 -0
  173. data/lib/sequencescape/barcoded_asset.rb +12 -0
  174. data/lib/sequencescape/batch.rb +24 -0
  175. data/lib/sequencescape/behaviour/barcoded.rb +15 -0
  176. data/lib/sequencescape/behaviour/labeled.rb +14 -0
  177. data/lib/sequencescape/behaviour/qced.rb +31 -0
  178. data/lib/sequencescape/behaviour/receptacle.rb +21 -0
  179. data/lib/sequencescape/behaviour/state_driven.rb +19 -0
  180. data/lib/sequencescape/bulk_transfer.rb +8 -0
  181. data/lib/sequencescape/comment.rb +7 -0
  182. data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
  183. data/lib/sequencescape/lane.rb +8 -0
  184. data/lib/sequencescape/library_event.rb +5 -0
  185. data/lib/sequencescape/library_tube.rb +7 -0
  186. data/lib/sequencescape/locale/en.yml +190 -0
  187. data/lib/sequencescape/lot.rb +11 -0
  188. data/lib/sequencescape/lot_type.rb +20 -0
  189. data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
  190. data/lib/sequencescape/order.rb +13 -0
  191. data/lib/sequencescape/order_template.rb +19 -0
  192. data/lib/sequencescape/pipeline.rb +10 -0
  193. data/lib/sequencescape/plate/pooling.rb +23 -0
  194. data/lib/sequencescape/plate/well_structure.rb +27 -0
  195. data/lib/sequencescape/plate.rb +71 -0
  196. data/lib/sequencescape/plate_conversion.rb +8 -0
  197. data/lib/sequencescape/plate_creation.rb +8 -0
  198. data/lib/sequencescape/plate_purpose.rb +24 -0
  199. data/lib/sequencescape/plate_template.rb +13 -0
  200. data/lib/sequencescape/pooled_plate_creation.rb +8 -0
  201. data/lib/sequencescape/project.rb +11 -0
  202. data/lib/sequencescape/qc_decision.rb +9 -0
  203. data/lib/sequencescape/qc_file.rb +14 -0
  204. data/lib/sequencescape/qcable.rb +17 -0
  205. data/lib/sequencescape/qcable_creator.rb +13 -0
  206. data/lib/sequencescape/request.rb +16 -0
  207. data/lib/sequencescape/robot.rb +5 -0
  208. data/lib/sequencescape/sample.rb +51 -0
  209. data/lib/sequencescape/sample_tube.rb +7 -0
  210. data/lib/sequencescape/search.rb +80 -0
  211. data/lib/sequencescape/specific_tube_creation.rb +8 -0
  212. data/lib/sequencescape/stamp.rb +9 -0
  213. data/lib/sequencescape/state_change.rb +11 -0
  214. data/lib/sequencescape/study.rb +14 -0
  215. data/lib/sequencescape/submission.rb +16 -0
  216. data/lib/sequencescape/submission_pool.rb +7 -0
  217. data/lib/sequencescape/tag.rb +14 -0
  218. data/lib/sequencescape/tag2_layout.rb +10 -0
  219. data/lib/sequencescape/tag2_layout_template.rb +9 -0
  220. data/lib/sequencescape/tag_group.rb +4 -0
  221. data/lib/sequencescape/tag_layout.rb +10 -0
  222. data/lib/sequencescape/tag_layout_template.rb +15 -0
  223. data/lib/sequencescape/template.rb +6 -0
  224. data/lib/sequencescape/transfer.rb +9 -0
  225. data/lib/sequencescape/transfer_request.rb +12 -0
  226. data/lib/sequencescape/transfer_request_collection.rb +8 -0
  227. data/lib/sequencescape/transfer_template.rb +9 -0
  228. data/lib/sequencescape/tube.rb +26 -0
  229. data/lib/sequencescape/tube_creation.rb +8 -0
  230. data/lib/sequencescape/tube_from_tube_creation.rb +8 -0
  231. data/lib/sequencescape/tube_purpose.rb +24 -0
  232. data/lib/sequencescape/user.rb +13 -0
  233. data/lib/sequencescape/volume_update.rb +6 -0
  234. data/lib/sequencescape/well.rb +19 -0
  235. data/lib/sequencescape/work_completion.rb +10 -0
  236. data/lib/sequencescape-api/actions.rb +69 -0
  237. data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
  238. data/lib/sequencescape-api/associations/base.rb +15 -0
  239. data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
  240. data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
  241. data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
  242. data/lib/sequencescape-api/associations/has_many.rb +123 -0
  243. data/lib/sequencescape-api/associations.rb +112 -0
  244. data/lib/sequencescape-api/capabilities.rb +11 -0
  245. data/lib/sequencescape-api/composition.rb +37 -0
  246. data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
  247. data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
  248. data/lib/sequencescape-api/connection_factory.rb +40 -0
  249. data/lib/sequencescape-api/core.rb +63 -0
  250. data/lib/sequencescape-api/core_ext/array.rb +7 -0
  251. data/lib/sequencescape-api/core_ext/hash.rb +18 -0
  252. data/lib/sequencescape-api/core_ext.rb +2 -0
  253. data/lib/sequencescape-api/error_handling.rb +42 -0
  254. data/lib/sequencescape-api/errors.rb +38 -0
  255. data/lib/sequencescape-api/finder_methods.rb +184 -0
  256. data/lib/sequencescape-api/locale/en.yml +7 -0
  257. data/lib/sequencescape-api/rails.rb +88 -0
  258. data/lib/sequencescape-api/resource/active_model.rb +17 -0
  259. data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
  260. data/lib/sequencescape-api/resource/attributes.rb +87 -0
  261. data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
  262. data/lib/sequencescape-api/resource/json.rb +114 -0
  263. data/lib/sequencescape-api/resource/modifications.rb +111 -0
  264. data/lib/sequencescape-api/resource.rb +47 -0
  265. data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
  266. data/lib/sequencescape-api/version.rb +5 -0
  267. data/lib/sequencescape-api.rb +16 -0
  268. data/lib/sequencescape.rb +81 -0
  269. data/sequencescape-api.gemspec +32 -0
  270. data/spec/sequencescape-api/associations_spec.rb +95 -0
  271. data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
  272. data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
  273. data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
  274. data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
  275. data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
  276. data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
  277. data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
  278. data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
  279. data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
  280. data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
  281. data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
  282. data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
  283. data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
  284. data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
  285. data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
  286. data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
  287. data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
  288. data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
  289. data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
  290. data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
  291. data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
  292. data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
  293. data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
  294. data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
  295. data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
  296. data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
  297. data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
  298. data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
  299. data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
  300. data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
  301. data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
  302. data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
  303. data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
  304. data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
  305. data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
  306. data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
  307. data/spec/sequencescape-api/modifications_spec.rb +169 -0
  308. data/spec/sequencescape-api/root_spec.rb +58 -0
  309. data/spec/spec_helper.rb +13 -0
  310. data/spec/support/contract_helper.rb +112 -0
  311. data/spec/support/namespaces.rb +67 -0
  312. data/spec/support/shared_examples.rb +12 -0
  313. metadata +540 -0
@@ -0,0 +1,57 @@
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+ module Sequencescape::Api::Associations::Base::InstanceMethods
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+ def self.included(base)
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+ base.class_eval do
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+ class_attribute :association, :options
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+ class_attribute :default_attributes_if_missing, :instance_writer => false
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+
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+ attr_reader :model
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+ delegate :read_timeout, :to => :@owner
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+ private :model
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+
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+ def api(*args, &block)
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+ # TODO: Consider updating
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+ @owner.__send__(:api, *args, &block)
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+ end
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+ private :api
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+ end
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+ end
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+
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+ def initialize(owner, json = nil)
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+ @owner = owner
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+ @attributes = json.nil? ? owner.attributes_for(association, default_attributes_if_missing) : attributes_from(json)
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+ @model = api.model(options[:class_name] || association)
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+ end
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+
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+ def new(*args, &block)
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+ model.new(api, *args, &block)
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+ end
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+ private :new
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+
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+ # We can be passed several different types of information as though it was JSON:
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+ #
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+ # 1. It could be a string, in which case we'll assume it's a UUID
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+ # 2. It could be an instance of the model we're expected to reference, in which case we take it's attributes
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+ # 3. It could be an association like us that references the same model, in which case we take it's attributes
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+ # 4. Finally it could actually be the JSON!
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+ def attributes_from(json)
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+ case
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+ when json.is_a?(String) then { uuid: json, uuid_only: true }
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+ when json.is_a?(Hash) then json
40
+ when json.respond_to?(:map) then json.map(&method(:attributes_from))
41
+ when json.is_a?(Sequencescape::Api::Resource) then json.as_json(:force => true, :action => :update, :root => false, :uuid => true)
42
+ when json.is_a?(Sequencescape::Api::Associations::Base) then json.as_json(:force => true, :action => :update)
43
+ else raise json.inspect
44
+ end
45
+ end
46
+ private :attributes_from
47
+
48
+ def proxy_present?
49
+ true
50
+ end
51
+ end
52
+
53
+ class NilClass
54
+ def proxy_present?
55
+ false
56
+ end
57
+ end
@@ -0,0 +1,15 @@
1
+ require 'ostruct'
2
+
3
+ class Sequencescape::Api::Associations::Base
4
+ require 'sequencescape-api/associations/base/instance_methods'
5
+
6
+ include InstanceMethods
7
+
8
+ def initialize(owner, json = nil)
9
+ super
10
+ @actions = OpenStruct.new(@attributes.delete('actions'))
11
+ end
12
+
13
+ attr_reader :actions
14
+ private :actions
15
+ end
@@ -0,0 +1,127 @@
1
+ require 'sequencescape-api/associations/base'
2
+ require 'sequencescape-api/error_handling'
3
+
4
+ module Sequencescape::Api::Associations::BelongsTo
5
+ module CommonBehaviour
6
+ def self.included(base)
7
+ base.class_eval do
8
+ include Sequencescape::Api::ErrorHandling
9
+ end
10
+ end
11
+
12
+ def initialize(*args, &block)
13
+ super
14
+ @object = new(@attributes, false)
15
+ end
16
+
17
+ def update_from_json(json)
18
+ @object.send(:update_from_json, json, false)
19
+ end
20
+ private :update_from_json
21
+
22
+ def respond_to?(name, include_private = false)
23
+ # One of our methods, or an eager loaded attribute, or the object needs to be loaded & checked
24
+ super or is_handled_by_object_instance?(name) or object.respond_to?(name, include_private)
25
+ end
26
+
27
+ def method_missing(name, *args, &block)
28
+ target = is_handled_by_object_instance?(name) ? @object : object
29
+ target.send(name, *args, &block)
30
+ end
31
+ protected :method_missing
32
+
33
+ def is_handled_by_object_instance?(name)
34
+ return false if @object.nil?
35
+
36
+ # TODO: I really hate special cases!
37
+ case
38
+ when name.to_sym == :uuid then true
39
+ when @object.eager_loaded_attribute?(name) then true
40
+ when @object.is_association?(name) then true
41
+ else false
42
+ end
43
+ end
44
+ private :is_handled_by_object_instance?
45
+
46
+ class LoadHandler
47
+ include Sequencescape::Api::BasicErrorHandling
48
+
49
+ def initialize(owner)
50
+ @owner = owner
51
+ end
52
+
53
+ delegate :loaded, :to => :@owner
54
+ private :loaded
55
+
56
+ def new(*args, &block)
57
+ # TODO: Consider updating
58
+ @owner.__send__(:new, *args, &block)
59
+ end
60
+ private :new
61
+
62
+ def success(json)
63
+ new(json, true).tap { loaded = true }
64
+ end
65
+ end
66
+
67
+ def object
68
+ @object ||= api.read(actions.read, LoadHandler.new(self))
69
+ @object
70
+ end
71
+ private :object
72
+
73
+ def as_json(options = nil)
74
+ @object.as_json({ :root => false, :uuid => false }.reverse_merge(options || {}))
75
+ end
76
+ end
77
+
78
+ class InlineAssociationProxy < Sequencescape::Api::Associations::Base
79
+ include Sequencescape::Api::Associations::BelongsTo::CommonBehaviour
80
+ end
81
+
82
+ class AssociationProxy < Sequencescape::Api::Associations::Base
83
+ include Sequencescape::Api::Associations::BelongsTo::CommonBehaviour
84
+
85
+ self.default_attributes_if_missing = {}
86
+
87
+ def initialize(*args, &block)
88
+ super
89
+ @loaded = false
90
+ end
91
+
92
+ attr_writer :loaded
93
+ private :loaded=
94
+
95
+ def object
96
+ @object = nil unless @loaded
97
+ super
98
+ end
99
+ private :object
100
+
101
+ def uuid_only?
102
+ @object.__send__(:uuid_only?)
103
+ end
104
+
105
+ delegate :hash, to: :uuid
106
+
107
+ def eql?(other)
108
+ uuid == other.uuid
109
+ end
110
+ end
111
+
112
+ def belongs_to(association, options = {}, &block)
113
+ association = association.to_sym
114
+
115
+ proxy = Class.new(
116
+ case options[:disposition].try(:to_sym)
117
+ when :inline then InlineAssociationProxy
118
+ else AssociationProxy
119
+ end
120
+ )
121
+ proxy.association = association
122
+ proxy.options = options
123
+ proxy.instance_eval(&block) if block_given?
124
+
125
+ association_methods(association, :belongs_to, proxy)
126
+ end
127
+ end
@@ -0,0 +1,10 @@
1
+ module Sequencescape::Api::Associations::HasMany::Json
2
+ def self.included(base)
3
+ base.default_attributes_if_missing = []
4
+ end
5
+
6
+ def as_json(options = nil)
7
+ options = { :root => false, :uuid => true }.reverse_merge(options || {})
8
+ all.map { |o| o.as_json(options) }.compact
9
+ end
10
+ end
@@ -0,0 +1,37 @@
1
+ module Sequencescape::Api::Associations::HasMany::Validation
2
+ def run_validations!
3
+ # NOTE: Don't use all? here because it fails early and we need to see all validation errors
4
+ all.inject(true) { |state, object| object.run_validations! and state }
5
+ end
6
+
7
+ def errors
8
+ CompositeErrors.new(self)
9
+ end
10
+
11
+ class CompositeErrors
12
+ def initialize(association)
13
+ @association = association
14
+ end
15
+
16
+ def full_messages
17
+ map_errors(&:full_messages).flatten
18
+ end
19
+
20
+ def empty?
21
+ map_errors(&:empty?).all?
22
+ end
23
+
24
+ def clear
25
+ map_errors(&:clear)
26
+ end
27
+
28
+ def [](field)
29
+ map_errors { |errors| errors[field] }.flatten
30
+ end
31
+
32
+ def map_errors(&block)
33
+ @association.map(&:errors)
34
+ .map(&block)
35
+ end
36
+ end
37
+ end
@@ -0,0 +1,123 @@
1
+ require 'sequencescape-api/finder_methods'
2
+ require 'sequencescape-api/associations/base'
3
+ require 'sequencescape-api/actions'
4
+
5
+ module Sequencescape::Api::Associations::HasMany
6
+ require 'sequencescape-api/associations/has_many/json'
7
+ require 'sequencescape-api/associations/has_many/validation'
8
+
9
+ class AssociationProxy < ::Sequencescape::Api::Associations::Base
10
+ include ::Sequencescape::Api::FinderMethods
11
+ include ::Sequencescape::Api::FinderMethods::Caching
12
+ extend ::Sequencescape::Api::Actions
13
+ include ::Sequencescape::Api::Associations::HasMany::Json
14
+ include ::Sequencescape::Api::Associations::HasMany::Validation
15
+ include Enumerable
16
+
17
+ def size
18
+ return @attributes['size'] if api.capabilities.size_in_pages?
19
+ all.size
20
+ end
21
+
22
+ def empty?
23
+ return @attributes['size'].zero? if api.capabilities.size_in_pages?
24
+ all.empty?
25
+ end
26
+
27
+ def present?
28
+ !empty?
29
+ end
30
+
31
+ def initialize(owner, json = nil)
32
+ super
33
+ @cached_all = case
34
+ when json.is_a?(Array) then json.map {|js| new_from(js) }
35
+ else nil
36
+ end
37
+ end
38
+
39
+ def new_from(json)
40
+ case
41
+ when json.is_a?(String) then new(uuid: json) # We've recieved an array of strings, prob. uuids
42
+ when json.is_a?(Hash) then new(json)
43
+ else json
44
+ end
45
+ end
46
+
47
+ def update_from_json(_)
48
+ @cached_all = nil
49
+ end
50
+ end
51
+
52
+ class InlineAssociationProxy
53
+ include Enumerable
54
+ include ::Sequencescape::Api::FinderMethods::Delegation
55
+ include ::Sequencescape::Api::Associations::Base::InstanceMethods
56
+ include ::Sequencescape::Api::Associations::HasMany::Json
57
+ include ::Sequencescape::Api::Associations::HasMany::Validation
58
+
59
+ def initialize(owner, json = nil)
60
+ super
61
+ @objects =
62
+ case
63
+ when @attributes.is_a?(Array) then @attributes.map(&method(:new))
64
+ when @attributes.is_a?(Hash) then @attributes.map { |uuid, json| new(json.merge('uuid' => uuid)) }
65
+ else raise StandardError, "Cannot handle has_many JSON: #{json.inspect}"
66
+ end
67
+ end
68
+
69
+ def update_from_json(json)
70
+ case
71
+ when json.is_a?(Array) then @objects = json.map(&method(:new))
72
+ when json.is_a?(Hash) then update_objects_from_json(json)
73
+ else raise StandardError, "Cannot handle has_many JSON: #{json.inspect}"
74
+ end
75
+ end
76
+ private :update_from_json
77
+
78
+ def update_objects_from_json(json)
79
+ all.each do |object|
80
+ object.send(:update_from_json, json[object.uuid]) if json.key?(object.uuid)
81
+ end
82
+ end
83
+ private :update_objects_from_json
84
+
85
+ def find(uuid)
86
+ @objects.detect { |o| o.uuid == uuid }
87
+ end
88
+
89
+ def all
90
+ @objects
91
+ end
92
+
93
+ def each_page(&block)
94
+ yield(@objects)
95
+ end
96
+
97
+ def new(json, &block)
98
+ super(json, false, &block)
99
+ end
100
+ private :new
101
+
102
+ # We are changed if any of our objects have been changed.
103
+ def changed?
104
+ @objects.any?(&:changed?)
105
+ end
106
+ end
107
+
108
+ def has_many(association, options = {}, &block)
109
+ association = association.to_sym
110
+
111
+ proxy = Class.new(
112
+ case options[:disposition].try(:to_sym)
113
+ when :inline then InlineAssociationProxy
114
+ else AssociationProxy
115
+ end
116
+ )
117
+ proxy.association = association
118
+ proxy.options = options
119
+ proxy.instance_eval(&block) if block_given?
120
+
121
+ association_methods(association, :has_many, proxy)
122
+ end
123
+ end
@@ -0,0 +1,112 @@
1
+ require 'active_model/errors'
2
+
3
+ module Sequencescape::Api::Associations
4
+ def self.extended(base)
5
+ base.class_eval do
6
+ include InstanceMethods
7
+ extend HasMany
8
+ extend BelongsTo
9
+ end
10
+ end
11
+
12
+ def association_methods(association, type, proxy)
13
+ proxy_class_name = [ association, type, 'proxy'].join('_').classify
14
+ const_set(proxy_class_name.to_sym, proxy)
15
+
16
+ line = __LINE__ + 1
17
+ class_eval(%Q{
18
+ def #{association}(reload = false)
19
+ associations[#{association.inspect}] = nil if !!reload
20
+ associations[#{association.inspect}] ||= #{proxy_class_name}.new(self)
21
+ associations[#{association.inspect}]
22
+ end
23
+
24
+ def #{association}=(json)
25
+ association = associations[#{association.inspect}]
26
+ if association.proxy_present?
27
+ association.send(:update_from_json, json)
28
+ else
29
+ associations[#{association.inspect}] = #{proxy_class_name}.new(self, json)
30
+ end
31
+ end
32
+ private #{association.inspect}=
33
+
34
+ def #{association}?
35
+ attributes_for?(#{association.inspect})
36
+ end
37
+ }, __FILE__, line)
38
+ end
39
+ private :association_methods
40
+
41
+ module InstanceMethods
42
+ def initialize(*args, &block)
43
+ @associations, @errors = {}, nil
44
+ super
45
+ end
46
+
47
+ attr_reader :associations
48
+ private :associations
49
+
50
+ def is_association?(name)
51
+ associations.key?(name.to_sym)
52
+ end
53
+
54
+ def attributes_for(path, default_value_if_missing = nil)
55
+ attributes_from_path(path, default_value_if_missing) or
56
+ raise Sequencescape::Api::JsonError.new(path.to_s, self)
57
+ end
58
+
59
+ def attributes_for?(path)
60
+ !!attributes_from_path(path)
61
+ end
62
+
63
+ def attributes_from_path(path, default_value_if_missing = nil)
64
+ path.to_s.split('.').inject(attributes) { |k,v| k.try(:[], v) } || default_value_if_missing
65
+ end
66
+ private :attributes_from_path
67
+
68
+ def run_validations!
69
+ our_result, their_result = super, @associations.values.all?(&:run_validations!)
70
+ our_result and their_result
71
+ end
72
+
73
+ class CompositeErrors < ::ActiveModel::Errors
74
+ def [](field)
75
+ association, *subfield = field.to_s.split('.')
76
+ errors_from_association = associations[association.to_sym].try(:errors).try(:[], subfield.join('.'))
77
+ errors_from_association.blank? ? super : errors_from_association
78
+ end
79
+
80
+ def full_messages
81
+ super.concat(association_errors.map(&:full_messages)).flatten
82
+ end
83
+
84
+ def empty?
85
+ super and association_errors.all?(&:empty?)
86
+ end
87
+
88
+ def clear
89
+ association_errors.map(&:clear)
90
+ super
91
+ end
92
+
93
+ def associations(*args, &block)
94
+ # TODO: Consider updating
95
+ @base.__send__(:associations, *args, &block)
96
+ end
97
+ private :associations
98
+
99
+ def association_errors
100
+ associations.values.map(&:errors)
101
+ end
102
+ private :association_errors
103
+ end
104
+
105
+ def errors
106
+ @errors ||= CompositeErrors.new(self)
107
+ end
108
+ end
109
+ end
110
+
111
+ require 'sequencescape-api/associations/has_many'
112
+ require 'sequencescape-api/associations/belongs_to'