sequencescape-client-api 0.3.5
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- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +4 -0
- data/README.markdown +4 -0
- data/Rakefile +2 -0
- data/doc/Array.html +192 -0
- data/doc/BaitLibrary.html +139 -0
- data/doc/Hash.html +242 -0
- data/doc/NilClass.html +214 -0
- data/doc/Sequencescape/Api/Actions/ClassActionHelpers.html +213 -0
- data/doc/Sequencescape/Api/Actions/InstanceActionHelpers.html +282 -0
- data/doc/Sequencescape/Api/Actions.html +197 -0
- data/doc/Sequencescape/Api/Associations/Base/InstanceMethods.html +352 -0
- data/doc/Sequencescape/Api/Associations/Base.html +237 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/AssociationProxy.html +332 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour/LoadHandler.html +279 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/CommonBehaviour.html +432 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo/InlineAssociationProxy.html +173 -0
- data/doc/Sequencescape/Api/Associations/BelongsTo.html +212 -0
- data/doc/Sequencescape/Api/Associations/HasMany/AssociationProxy.html +366 -0
- data/doc/Sequencescape/Api/Associations/HasMany/InlineAssociationProxy.html +529 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Json.html +250 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation/CompositeErrors.html +493 -0
- data/doc/Sequencescape/Api/Associations/HasMany/Validation.html +245 -0
- data/doc/Sequencescape/Api/Associations/HasMany.html +212 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods/CompositeErrors.html +379 -0
- data/doc/Sequencescape/Api/Associations/InstanceMethods.html +496 -0
- data/doc/Sequencescape/Api/Associations.html +201 -0
- data/doc/Sequencescape/Api/BasicErrorHandling.html +371 -0
- data/doc/Sequencescape/Api/Composition/Target.html +262 -0
- data/doc/Sequencescape/Api/Composition.html +215 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Actions.html +611 -0
- data/doc/Sequencescape/Api/ConnectionFactory/Helpers.html +233 -0
- data/doc/Sequencescape/Api/ConnectionFactory.html +321 -0
- data/doc/Sequencescape/Api/ErrorHandling/TurnOffValidationOfUuidOnlyRecords.html +189 -0
- data/doc/Sequencescape/Api/ErrorHandling.html +201 -0
- data/doc/Sequencescape/Api/FinderMethods/AllHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods/Caching.html +183 -0
- data/doc/Sequencescape/Api/FinderMethods/Delegation.html +189 -0
- data/doc/Sequencescape/Api/FinderMethods/FindByUuidHandler.html +279 -0
- data/doc/Sequencescape/Api/FinderMethods.html +364 -0
- data/doc/Sequencescape/Api/GeneralError.html +176 -0
- data/doc/Sequencescape/Api/JsonError.html +205 -0
- data/doc/Sequencescape/Api/ModifyingHandler.html +359 -0
- data/doc/Sequencescape/Api/PageOfResults/UpdateHandler.html +279 -0
- data/doc/Sequencescape/Api/PageOfResults.html +611 -0
- data/doc/Sequencescape/Api/Rails/ApplicationController.html +207 -0
- data/doc/Sequencescape/Api/Rails/Resourced.html +269 -0
- data/doc/Sequencescape/Api/Rails.html +117 -0
- data/doc/Sequencescape/Api/Resource/ActiveModel.html +287 -0
- data/doc/Sequencescape/Api/Resource/Attributes/InstanceMethods.html +272 -0
- data/doc/Sequencescape/Api/Resource/Attributes.html +199 -0
- data/doc/Sequencescape/Api/Resource/Groups/InstanceMethods.html +378 -0
- data/doc/Sequencescape/Api/Resource/Groups/Json.html +112 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy/InstanceMethods.html +256 -0
- data/doc/Sequencescape/Api/Resource/Groups/Proxy.html +177 -0
- data/doc/Sequencescape/Api/Resource/Groups.html +270 -0
- data/doc/Sequencescape/Api/Resource/InstanceMethods.html +344 -0
- data/doc/Sequencescape/Api/Resource/Json/ClassMethods.html +243 -0
- data/doc/Sequencescape/Api/Resource/Json/CoercionHandler.html +279 -0
- data/doc/Sequencescape/Api/Resource/Json.html +405 -0
- data/doc/Sequencescape/Api/Resource/Modifications.html +295 -0
- data/doc/Sequencescape/Api/Resource.html +436 -0
- data/doc/Sequencescape/Api/ResourceInvalid.html +289 -0
- data/doc/Sequencescape/Api/ResourceModelProxy.html +444 -0
- data/doc/Sequencescape/Api/Version1.html +218 -0
- data/doc/Sequencescape/Api/Version2.html +222 -0
- data/doc/Sequencescape/Api.html +704 -0
- data/doc/Sequencescape/Asset.html +262 -0
- data/doc/Sequencescape/AssetAudit.html +258 -0
- data/doc/Sequencescape/AssetGroup.html +258 -0
- data/doc/Sequencescape/BaitLibraryLayout.html +258 -0
- data/doc/Sequencescape/BarcodePrinter.html +258 -0
- data/doc/Sequencescape/BarcodedAsset.html +293 -0
- data/doc/Sequencescape/Batch.html +327 -0
- data/doc/Sequencescape/Behaviour/Barcoded.html +195 -0
- data/doc/Sequencescape/Behaviour/Labeled.html +189 -0
- data/doc/Sequencescape/Behaviour/Qced/QcFile.html +244 -0
- data/doc/Sequencescape/Behaviour/Qced.html +199 -0
- data/doc/Sequencescape/Behaviour/Receptacle/Aliquot.html +258 -0
- data/doc/Sequencescape/Behaviour/Receptacle.html +195 -0
- data/doc/Sequencescape/Behaviour/StateDriven.html +205 -0
- data/doc/Sequencescape/Behaviour.html +130 -0
- data/doc/Sequencescape/BulkTransfer.html +258 -0
- data/doc/Sequencescape/Comment.html +258 -0
- data/doc/Sequencescape/Lane.html +282 -0
- data/doc/Sequencescape/LibraryEvent.html +258 -0
- data/doc/Sequencescape/LibraryTube.html +322 -0
- data/doc/Sequencescape/Lot.html +258 -0
- data/doc/Sequencescape/LotType/LotCreator.html +182 -0
- data/doc/Sequencescape/LotType.html +268 -0
- data/doc/Sequencescape/MultiplexedLibraryTube.html +326 -0
- data/doc/Sequencescape/Order.html +338 -0
- data/doc/Sequencescape/OrderTemplate/OrderCreator.html +182 -0
- data/doc/Sequencescape/OrderTemplate.html +268 -0
- data/doc/Sequencescape/Pipeline.html +258 -0
- data/doc/Sequencescape/Plate/CommentsCreation.html +184 -0
- data/doc/Sequencescape/Plate/CurrentVolumeSubstraction.html +236 -0
- data/doc/Sequencescape/Plate/Pooling.html +249 -0
- data/doc/Sequencescape/Plate/WellStructure.html +313 -0
- data/doc/Sequencescape/Plate.html +446 -0
- data/doc/Sequencescape/PlateConversion.html +258 -0
- data/doc/Sequencescape/PlateCreation.html +258 -0
- data/doc/Sequencescape/PlatePurpose/PlateCreation.html +186 -0
- data/doc/Sequencescape/PlatePurpose.html +268 -0
- data/doc/Sequencescape/PlateTemplate.html +282 -0
- data/doc/Sequencescape/PooledPlateCreation.html +258 -0
- data/doc/Sequencescape/Project.html +258 -0
- data/doc/Sequencescape/QcDecision.html +258 -0
- data/doc/Sequencescape/QcFile.html +327 -0
- data/doc/Sequencescape/Qcable.html +258 -0
- data/doc/Sequencescape/QcableCreator.html +258 -0
- data/doc/Sequencescape/Request.html +258 -0
- data/doc/Sequencescape/Robot.html +258 -0
- data/doc/Sequencescape/Sample.html +258 -0
- data/doc/Sequencescape/SampleTube.html +318 -0
- data/doc/Sequencescape/Search/BaseHandler.html +234 -0
- data/doc/Sequencescape/Search/MultipleResultHandler.html +276 -0
- data/doc/Sequencescape/Search/SingleResultHandler.html +303 -0
- data/doc/Sequencescape/Search.html +431 -0
- data/doc/Sequencescape/SpecificTubeCreation.html +258 -0
- data/doc/Sequencescape/Stamp.html +258 -0
- data/doc/Sequencescape/StateChange.html +258 -0
- data/doc/Sequencescape/Study.html +258 -0
- data/doc/Sequencescape/Submission.html +258 -0
- data/doc/Sequencescape/SubmissionPool.html +258 -0
- data/doc/Sequencescape/Tag/Group.html +219 -0
- data/doc/Sequencescape/Tag.html +149 -0
- data/doc/Sequencescape/Tag2Layout.html +258 -0
- data/doc/Sequencescape/Tag2LayoutTemplate.html +258 -0
- data/doc/Sequencescape/TagGroup.html +258 -0
- data/doc/Sequencescape/TagLayout.html +258 -0
- data/doc/Sequencescape/TagLayoutTemplate.html +258 -0
- data/doc/Sequencescape/Template.html +258 -0
- data/doc/Sequencescape/Transfer.html +258 -0
- data/doc/Sequencescape/TransferTemplate.html +258 -0
- data/doc/Sequencescape/Tube.html +319 -0
- data/doc/Sequencescape/TubeCreation.html +258 -0
- data/doc/Sequencescape/TubeFromTubeCreation.html +258 -0
- data/doc/Sequencescape/TubePurpose/TubeCreation.html +186 -0
- data/doc/Sequencescape/TubePurpose.html +268 -0
- data/doc/Sequencescape/User.html +258 -0
- data/doc/Sequencescape/VolumeUpdate.html +258 -0
- data/doc/Sequencescape/Well.html +362 -0
- data/doc/Sequencescape.html +121 -0
- data/doc/_index.html +1248 -0
- data/doc/class_list.html +51 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +58 -0
- data/doc/css/style.css +481 -0
- data/doc/file.README.html +76 -0
- data/doc/file_list.html +56 -0
- data/doc/frames.html +17 -0
- data/doc/index.html +76 -0
- data/doc/js/app.js +243 -0
- data/doc/js/full_list.js +216 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1411 -0
- data/doc/top-level-namespace.html +114 -0
- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
- data/lib/sequencescape/order.rb +13 -0
- data/lib/sequencescape/order_template.rb +19 -0
- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
- data/lib/sequencescape/plate_creation.rb +8 -0
- data/lib/sequencescape/plate_purpose.rb +24 -0
- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
- data/lib/sequencescape/project.rb +11 -0
- data/lib/sequencescape/qc_decision.rb +9 -0
- data/lib/sequencescape/qc_file.rb +14 -0
- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
- data/lib/sequencescape/request.rb +16 -0
- data/lib/sequencescape/robot.rb +5 -0
- data/lib/sequencescape/sample.rb +51 -0
- data/lib/sequencescape/sample_tube.rb +7 -0
- data/lib/sequencescape/search.rb +80 -0
- data/lib/sequencescape/specific_tube_creation.rb +8 -0
- data/lib/sequencescape/stamp.rb +9 -0
- data/lib/sequencescape/state_change.rb +11 -0
- data/lib/sequencescape/study.rb +14 -0
- data/lib/sequencescape/submission.rb +16 -0
- data/lib/sequencescape/submission_pool.rb +7 -0
- data/lib/sequencescape/tag.rb +14 -0
- data/lib/sequencescape/tag2_layout.rb +10 -0
- data/lib/sequencescape/tag2_layout_template.rb +9 -0
- data/lib/sequencescape/tag_group.rb +4 -0
- data/lib/sequencescape/tag_layout.rb +10 -0
- data/lib/sequencescape/tag_layout_template.rb +15 -0
- data/lib/sequencescape/template.rb +6 -0
- data/lib/sequencescape/transfer.rb +9 -0
- data/lib/sequencescape/transfer_request.rb +12 -0
- data/lib/sequencescape/transfer_request_collection.rb +8 -0
- data/lib/sequencescape/transfer_template.rb +9 -0
- data/lib/sequencescape/tube.rb +26 -0
- data/lib/sequencescape/tube_creation.rb +8 -0
- data/lib/sequencescape/tube_from_tube_creation.rb +8 -0
- data/lib/sequencescape/tube_purpose.rb +24 -0
- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
- data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
- data/lib/sequencescape-api/associations/has_many.rb +123 -0
- data/lib/sequencescape-api/associations.rb +112 -0
- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
checksums.yaml
ADDED
@@ -0,0 +1,7 @@
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---
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SHA1:
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metadata.gz: 9a799b5bbbee6d66f2d904d2169ace332d758eed
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data.tar.gz: a8a6a8da4f6a90565df7c47710479dc72b3ea13e
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SHA512:
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6
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metadata.gz: 11ba5405d591097388d80b0043456f706e34cd9aaa656024f555d51b2b28aad55daf1f2a512efd48b6631d85b5de8b7af921d992f035e58b9fa4babfffe60d47
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7
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+
data.tar.gz: aaafda8d6632ed60a89d3ae4b731bee8b7ec56eca89d968e0a933fd8db9912f164e56be8880394a7c905e366a502e35c93bfe621a5e71946b2421084d609c85e
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data/.gitignore
ADDED
data/.rspec
ADDED
@@ -0,0 +1 @@
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1
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--color
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data/.rvmrc
ADDED
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#!/usr/bin/env bash
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# This is an RVM Project .rvmrc file, used to automatically load the ruby
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# development environment upon cd'ing into the directory
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# First we specify our desired <ruby>[@<gemset>], the @gemset name is optional,
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# Only full ruby name is supported here, for short names use:
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# echo "rvm use 1.9.3" > .rvmrc
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environment_id="ruby-2.3.2@sequencescape-api"
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# Uncomment the following lines if you want to verify rvm version per project
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# rvmrc_rvm_version="1.15.3 (master)" # 1.10.1 seams as a safe start
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# eval "$(echo ${rvm_version}.${rvmrc_rvm_version} | awk -F. '{print "[[ "$1*65536+$2*256+$3" -ge "$4*65536+$5*256+$6" ]]"}' )" || {
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# echo "This .rvmrc file requires at least RVM ${rvmrc_rvm_version}, aborting loading."
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# return 1
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# }
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# First we attempt to load the desired environment directly from the environment
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# file. This is very fast and efficient compared to running through the entire
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# CLI and selector. If you want feedback on which environment was used then
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# insert the word 'use' after --create as this triggers verbose mode.
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if [[ -d "${rvm_path:-$HOME/.rvm}/environments"
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&& -s "${rvm_path:-$HOME/.rvm}/environments/$environment_id" ]]
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then
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\. "${rvm_path:-$HOME/.rvm}/environments/$environment_id"
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[[ -s "${rvm_path:-$HOME/.rvm}/hooks/after_use" ]] &&
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+
\. "${rvm_path:-$HOME/.rvm}/hooks/after_use" || true
|
28
|
+
if [[ $- == *i* ]] # check for interactive shells
|
29
|
+
then echo "Using: $(tput setaf 2)$GEM_HOME$(tput sgr0)" # show the user the ruby and gemset they are using in green
|
30
|
+
else echo "Using: $GEM_HOME" # don't use colors in non-interactive shells
|
31
|
+
fi
|
32
|
+
else
|
33
|
+
# If the environment file has not yet been created, use the RVM CLI to select.
|
34
|
+
rvm --create use "$environment_id" || {
|
35
|
+
echo "Failed to create RVM environment '${environment_id}'."
|
36
|
+
return 1
|
37
|
+
}
|
38
|
+
fi
|
39
|
+
|
40
|
+
# If you use bundler, this might be useful to you:
|
41
|
+
# if [[ -s Gemfile ]] && {
|
42
|
+
# ! builtin command -v bundle >/dev/null ||
|
43
|
+
# builtin command -v bundle | GREP_OPTIONS= \grep $rvm_path/bin/bundle >/dev/null
|
44
|
+
# }
|
45
|
+
# then
|
46
|
+
# printf "%b" "The rubygem 'bundler' is not installed. Installing it now.\n"
|
47
|
+
# gem install bundler
|
48
|
+
# fi
|
49
|
+
# if [[ -s Gemfile ]] && builtin command -v bundle >/dev/null
|
50
|
+
# then
|
51
|
+
# bundle install | GREP_OPTIONS= \grep -vE '^Using|Your bundle is complete'
|
52
|
+
# fi
|
data/.yardoc/checksums
ADDED
@@ -0,0 +1,96 @@
|
|
1
|
+
lib/sequencescape.rb f1ef45e0103928e956a5ebc15779d1ed83e2fdb9
|
2
|
+
lib/sequencescape/lot.rb eee5eadac6dcdc54a4e6ab72f02d6182f51289b7
|
3
|
+
lib/sequencescape-api.rb d8d94763ab3f41c327a52fb98b250ae80a875764
|
4
|
+
lib/sequencescape/tag.rb a9ff0a307c39ecd6f90e550c89b52d52932dea79
|
5
|
+
lib/sequencescape/well.rb e9bf96462181a9808322f7dba65df4ab1bf53a48
|
6
|
+
lib/sequencescape/tube.rb 7e344b0fcf67f7649d65dfd2aba0f4a1d89c6cc3
|
7
|
+
lib/sequencescape/user.rb 93a343a75b695b4b55743a593108755286f419a3
|
8
|
+
lib/sequencescape/lane.rb c44befb10863ed668f525f1f4d4ed323bddf7ec8
|
9
|
+
lib/sequencescape/batch.rb cb53971ebfdc77fe6d60fb0eaaa5c396e4a980e7
|
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|
+
lib/sequencescape/asset.rb 890fff75ba8c2da064d5e24a839654a7ee6a491d
|
11
|
+
lib/sequencescape/stamp.rb 6395118ac1af4dba8e3b6470077c6f0623d59f8a
|
12
|
+
lib/sequencescape/robot.rb d999b32a25f7dfa919e83d756cac1f47bd41ad0a
|
13
|
+
lib/sequencescape/study.rb 8034c314666ea0064522f174a980c528542049b4
|
14
|
+
lib/sequencescape/order.rb 0add007df0bc1daa99f248719390c257914e1a75
|
15
|
+
lib/sequencescape/plate.rb c0abc831cdc75e6c1225a3fe62e36a70e602f254
|
16
|
+
lib/sequencescape/qcable.rb 780d660791b717ffe13b4983ffd9002e77ce565c
|
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|
+
lib/sequencescape/sample.rb b78abe25f187f8a6bc17a1cb3767fed1fc44d34a
|
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|
+
lib/sequencescape/search.rb 040f67051e9cbc91a7a2f5e6cdfdb7b72232ac33
|
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|
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|
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|
+
lib/sequencescape/comment.rb 0619a17ec314bae8a9f0123a396355b011824ca3
|
21
|
+
lib/sequencescape/project.rb 13e0ac1630ff196f3ba66cc4f314186584b52d99
|
22
|
+
lib/sequencescape/request.rb 9a344bc8399281b5dd7fc945ddd2432d67eb1346
|
23
|
+
lib/sequencescape/template.rb 157fe4ac56b451b663dfc98aaecdfae3544ee507
|
24
|
+
lib/sequencescape/pipeline.rb d37f03901807021348fdec1da269df2b17a74ca6
|
25
|
+
lib/sequencescape-api/core.rb d11c6ed138b0dffe405bd77a3cfa6800fc85426a
|
26
|
+
lib/sequencescape/lot_type.rb 3c0a8fe4871173d7fc81b46a4f10bbf2fd5270cd
|
27
|
+
lib/sequencescape/transfer.rb 6519d8a0148f0fb6c4d662c2e47f3637bdf59de0
|
28
|
+
lib/sequencescape-api/rails.rb 13fb3715e29b8d7e42f2643803b748497ba9bb75
|
29
|
+
lib/sequencescape/tag_group.rb 25bc7a608646f7899171290bef762166ad0071a6
|
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|
+
lib/sequencescape/submission.rb 2d01dcb37606158b009b3527d27987e3ba7060a4
|
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|
+
lib/sequencescape-api/errors.rb b26ba8361dea10336668ad3161dff7b8ca3808f0
|
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|
+
lib/sequencescape/tag_layout.rb cdf31ddb8c39b3c7d62c1af562f033f38ad5cd7e
|
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|
+
lib/sequencescape/qc_decision.rb a52a035a273cdeb11962b90f9197f9b60fa02eff
|
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|
+
lib/sequencescape/asset_group.rb 68eec6ed8d693731384e39322d4a18bd65546609
|
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|
+
lib/sequencescape/asset_audit.rb edf83297f26e7df548cbb8981fefd9587afd03c2
|
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|
+
lib/sequencescape-api/version.rb 6238783915f66b70450d9ab7cfa7d64046699f4a
|
37
|
+
lib/sequencescape/sample_tube.rb 5218b7a961e0b40dbcb563436864d07d867546f2
|
38
|
+
lib/sequencescape/tag2_layout.rb 9d59f0af8300851f7034d37d441c72cc871109a3
|
39
|
+
lib/sequencescape-api/actions.rb a8f4bf5def1bc1dbfdd7ac2b4654a422392370d8
|
40
|
+
lib/sequencescape/tube_purpose.rb 04857d4231c680831401b9dda7ad4ab34e85396b
|
41
|
+
lib/sequencescape-api/core_ext.rb 03fc8729cbdc09666f36ac3986684d358fbeee5f
|
42
|
+
lib/sequencescape/library_tube.rb 4f47f9f896984c8026612a9a93b0d3b5b8c42db8
|
43
|
+
lib/sequencescape/bait_library.rb 740fca04f0fda20cb44e6a9534d608880b43c160
|
44
|
+
lib/sequencescape/state_change.rb 4697900531a19fc2f4ad504add3d0071b82d2673
|
45
|
+
lib/sequencescape-api/resource.rb 628f297714d354869600add6ceb6a6bba388f040
|
46
|
+
lib/sequencescape/plate/pooling.rb a78aac1d94b9c923daeb259b9a15e892cd2c5c16
|
47
|
+
lib/sequencescape/bulk_transfer.rb f8b237597168f179e2a334338b8da94f6a6a3471
|
48
|
+
lib/sequencescape/library_event.rb 700717e888255427869e41a251cca60de69ec963
|
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|
+
lib/sequencescape/plate_purpose.rb bf3f121c962998e5be072d985cb9fd0c3db15566
|
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|
+
lib/sequencescape/tube_creation.rb 961ae9e672ac161ddb889b53d94afeb4d5bb1989
|
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|
+
lib/sequencescape/volume_update.rb 329e8592da18d6be3b7374057ac356df47526519
|
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|
+
lib/sequencescape/barcoded_asset.rb cf0ad43cc6741ce7143c3eda9b3b1af977d7e112
|
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|
+
lib/sequencescape/order_template.rb bb2418c545c0283ddd9fc5393a3ce973f0ac6e1b
|
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|
+
lib/sequencescape/behaviour/qced.rb eff0bbee45c5139207109bfff1f7dfa1aeafc0b4
|
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|
+
lib/sequencescape/plate_creation.rb 79341588502a0787258208fa58976ea324f5d409
|
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|
+
lib/sequencescape/qcable_creator.rb 178c8343e9806621372b6817a28ef9e9681b8360
|
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|
+
lib/sequencescape/plate_template.rb f1b4b5f7e21d495571a06895f35879fd7336e5cf
|
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|
+
lib/sequencescape-api/composition.rb ea6587f6b1acc13c10c8bf70dc5cc428a1415f20
|
59
|
+
lib/sequencescape/submission_pool.rb 24279bf21b2d8e84d1c2f7875cb2ed82a8f2e113
|
60
|
+
lib/sequencescape/barcode_printer.rb b374d1ddf5d99f191911f112d9e1c74cdb1cba6b
|
61
|
+
lib/sequencescape-api/capabilities.rb e253fa4141e4f7520c78d7548658b09251f90c2e
|
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|
+
lib/sequencescape/plate_conversion.rb a2489aa6d7c2e8fece82a7607ea4ec20f2bf0d3b
|
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|
+
lib/sequencescape-api/associations.rb 5efbd6a8824cd49344247d9b3925277f5dd0b6da
|
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|
+
lib/sequencescape/transfer_template.rb c3af58ab7beece37f959fb7d17005430105656e5
|
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|
+
lib/sequencescape/behaviour/labeled.rb dc3c43d3c691c363674b73d134e337ca934fe175
|
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|
+
lib/sequencescape-api/core_ext/hash.rb 34a2ea03bdff4ad751202e02c373f388256ac023
|
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|
+
lib/sequencescape-api/resource/json.rb 8f3d5cdf4cea61c0c12ccb6b34096b594b4b8baf
|
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|
+
lib/sequencescape/behaviour/barcoded.rb 15778ade13b29751be577bea626fd6e6260f0b0b
|
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|
+
lib/sequencescape-api/finder_methods.rb b7236601c925e75875e8702b87d30eaac4da0669
|
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|
+
lib/sequencescape-api/error_handling.rb aa0626e8a55ca7330a67e72ac7186d27031bbb75
|
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|
+
lib/sequencescape-api/core_ext/array.rb 4477c07f3544730dba67ca58a4e2bdeb7374aa78
|
72
|
+
lib/sequencescape/tag_layout_template.rb 94af6c5217771e6fcf7143914097b986daeb71de
|
73
|
+
lib/sequencescape/bait_library_layout.rb b12c8c77fb648d50d7fe81ea5f226e93c1ad67c9
|
74
|
+
lib/sequencescape/plate/well_structure.rb 12e03f82ef503c3dc4b1abfbefae3d04a84351b4
|
75
|
+
lib/sequencescape/behaviour/receptacle.rb f8dcb0fdde569cd1a5ddd4ce35072f9c8ac0c51b
|
76
|
+
lib/sequencescape/tag2_layout_template.rb 33f10ba5a74d7e48c4b57866c147f43b458b11c2
|
77
|
+
lib/sequencescape-api/associations/base.rb 9cf8b44319b482fb26882950857927a4eaf5d07f
|
78
|
+
lib/sequencescape/pooled_plate_creation.rb 86e9b80a5614e002eebb15ba55f24e66ef3d7c01
|
79
|
+
lib/sequencescape/behaviour/state_driven.rb ece567f8ff7669a79977513e866fc556055964af
|
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|
+
lib/sequencescape-api/connection_factory.rb 6b3f6bb23d3a165186040b2e3ad19775c73c8b9f
|
81
|
+
lib/sequencescape/specific_tube_creation.rb d2d1fa5465293b4c1f5675a01620e72b62792e0f
|
82
|
+
lib/sequencescape/tube_from_tube_creation.rb 79309f7107850d8c8cf96923030a41a2063aca4d
|
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|
+
lib/sequencescape-api/resource/attributes.rb 31370e16ce4b5cd0eca1deb940dadc8abbd41bb0
|
84
|
+
lib/sequencescape/multiplexed_library_tube.rb 8fb480e7f79b7668e98115d359bac35c98888562
|
85
|
+
lib/sequencescape-api/resource_model_proxy.rb c0fbe740a86609168299125fccad299b59bff49f
|
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|
+
lib/sequencescape-api/resource/active_model.rb cc303b41cf88cecf6febcbcddd7ee7189c6b4901
|
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|
+
lib/sequencescape-api/associations/has_many.rb 109c34d811e74b654573281fa3101cb95c75b80e
|
88
|
+
lib/sequencescape-api/resource/modifications.rb 2c4d5551237d4e2d50e002dff68abf8b832a8011
|
89
|
+
lib/sequencescape-api/associations/belongs_to.rb 38adfe9d440f490702cecfbbd8a0083d60847f34
|
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|
+
lib/sequencescape-api/resource/attribute_groups.rb 88e65880ea3f9f72e43d2cd7f5f497f219cca7af
|
91
|
+
lib/sequencescape-api/resource/instance_methods.rb 03300e7b495518570ccec1eb1619ea0a13cf4cc6
|
92
|
+
lib/sequencescape-api/associations/has_many/json.rb f50133b9f25791c6c63514f99616b5d57764bb07
|
93
|
+
lib/sequencescape-api/connection_factory/actions.rb f368f38bb57bac9612b95bf77f30a3de39d52bae
|
94
|
+
lib/sequencescape-api/connection_factory/helpers.rb c4f77830272a28c001f8b95d84feb58226b548a4
|
95
|
+
lib/sequencescape-api/associations/has_many/validation.rb e62c2386d7f29bfe3f1385964511c407e115f24c
|
96
|
+
lib/sequencescape-api/associations/base/instance_methods.rb 7827534daffdca8052d34fba057fed79944c973e
|
data/.yardoc/complete
ADDED
File without changes
|
Binary file
|
Binary file
|
data/.yardoc/proxy_types
ADDED
Binary file
|
data/Gemfile
ADDED
data/README.markdown
ADDED
data/Rakefile
ADDED
data/doc/Array.html
ADDED
@@ -0,0 +1,192 @@
|
|
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|
+
<!DOCTYPE html>
|
2
|
+
<html>
|
3
|
+
<head>
|
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|
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<meta charset="utf-8">
|
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|
+
<meta name="viewport" content="width=device-width, initial-scale=1.0">
|
6
|
+
<title>
|
7
|
+
Class: Array
|
8
|
+
|
9
|
+
— Documentation by YARD 0.9.5
|
10
|
+
|
11
|
+
</title>
|
12
|
+
|
13
|
+
<link rel="stylesheet" href="css/style.css" type="text/css" charset="utf-8" />
|
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|
+
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|
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<link rel="stylesheet" href="css/common.css" type="text/css" charset="utf-8" />
|
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|
+
|
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|
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<script type="text/javascript" charset="utf-8">
|
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+
pathId = "Array";
|
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+
relpath = '';
|
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|
+
</script>
|
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|
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|
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|
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|
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<script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
|
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<script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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|
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|
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|
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|
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|
+
</div>
|
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|
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|
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<div id="main" tabindex="-1">
|
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<div id="header">
|
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|
+
<div id="menu">
|
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+
|
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|
+
<a href="_index.html">Index (A)</a> »
|
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|
+
|
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|
+
|
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<span class="title">Array</span>
|
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+
|
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|
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|
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|
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|
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<div class="clear"></div>
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<iframe id="search_frame" src="class_list.html"></iframe>
|
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|
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</h1>
|
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|
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<dl>
|
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<dt>Inherits:</dt>
|
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<dd>
|
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<span class="inheritName">Object</span>
|
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|
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|
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|
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|
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|
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|
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|
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<h2>
|
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Instance Method Summary
|
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|
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<small><a href="#" class="summary_toggle">collapse</a></small>
|
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</h2>
|
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|
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|
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<a href="#or_sentence-instance_method" title="#or_sentence (instance method)">#<strong>or_sentence</strong> ⇒ Object </a>
|
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<p class="inherited"><span class='object_link'><a href="Sequencescape/Api/Composition/Target.html#included-class_method" title="Sequencescape::Api::Composition::Target.included (method)">included</a></span>, <span class='object_link'><a href="Sequencescape/Api/Composition/Target.html#initialize-instance_method" title="Sequencescape::Api::Composition::Target#initialize (method)">#initialize</a></span></p>
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