sequencescape-client-api 0.3.5
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- checksums.yaml +7 -0
- data/.gitignore +7 -0
- data/.rspec +1 -0
- data/.rvmrc +52 -0
- data/.yardoc/checksums +96 -0
- data/.yardoc/complete +0 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +4 -0
- data/README.markdown +4 -0
- data/Rakefile +2 -0
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- data/doc/Sequencescape/Api/Associations/HasMany/Json.html +250 -0
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- data/doc/Sequencescape/Api/FinderMethods/Caching.html +183 -0
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- data/doc/Sequencescape/Api/ModifyingHandler.html +359 -0
- data/doc/Sequencescape/Api/PageOfResults/UpdateHandler.html +279 -0
- data/doc/Sequencescape/Api/PageOfResults.html +611 -0
- data/doc/Sequencescape/Api/Rails/ApplicationController.html +207 -0
- data/doc/Sequencescape/Api/Rails/Resourced.html +269 -0
- data/doc/Sequencescape/Api/Rails.html +117 -0
- data/doc/Sequencescape/Api/Resource/ActiveModel.html +287 -0
- data/doc/Sequencescape/Api/Resource/Attributes/InstanceMethods.html +272 -0
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- data/doc/Sequencescape/Api/Resource/Groups/InstanceMethods.html +378 -0
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- data/doc/Sequencescape/Api/Resource/Json/CoercionHandler.html +279 -0
- data/doc/Sequencescape/Api/Resource/Json.html +405 -0
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- data/doc/Sequencescape/Api.html +704 -0
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- data/doc/Sequencescape/BaitLibraryLayout.html +258 -0
- data/doc/Sequencescape/BarcodePrinter.html +258 -0
- data/doc/Sequencescape/BarcodedAsset.html +293 -0
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- data/doc/Sequencescape/Behaviour/Labeled.html +189 -0
- data/doc/Sequencescape/Behaviour/Qced/QcFile.html +244 -0
- data/doc/Sequencescape/Behaviour/Qced.html +199 -0
- data/doc/Sequencescape/Behaviour/Receptacle/Aliquot.html +258 -0
- data/doc/Sequencescape/Behaviour/Receptacle.html +195 -0
- data/doc/Sequencescape/Behaviour/StateDriven.html +205 -0
- data/doc/Sequencescape/Behaviour.html +130 -0
- data/doc/Sequencescape/BulkTransfer.html +258 -0
- data/doc/Sequencescape/Comment.html +258 -0
- data/doc/Sequencescape/Lane.html +282 -0
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- data/doc/Sequencescape/LibraryTube.html +322 -0
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- data/doc/Sequencescape/Project.html +258 -0
- data/doc/Sequencescape/QcDecision.html +258 -0
- data/doc/Sequencescape/QcFile.html +327 -0
- data/doc/Sequencescape/Qcable.html +258 -0
- data/doc/Sequencescape/QcableCreator.html +258 -0
- data/doc/Sequencescape/Request.html +258 -0
- data/doc/Sequencescape/Robot.html +258 -0
- data/doc/Sequencescape/Sample.html +258 -0
- data/doc/Sequencescape/SampleTube.html +318 -0
- data/doc/Sequencescape/Search/BaseHandler.html +234 -0
- data/doc/Sequencescape/Search/MultipleResultHandler.html +276 -0
- data/doc/Sequencescape/Search/SingleResultHandler.html +303 -0
- data/doc/Sequencescape/Search.html +431 -0
- data/doc/Sequencescape/SpecificTubeCreation.html +258 -0
- data/doc/Sequencescape/Stamp.html +258 -0
- data/doc/Sequencescape/StateChange.html +258 -0
- data/doc/Sequencescape/Study.html +258 -0
- data/doc/Sequencescape/Submission.html +258 -0
- data/doc/Sequencescape/SubmissionPool.html +258 -0
- data/doc/Sequencescape/Tag/Group.html +219 -0
- data/doc/Sequencescape/Tag.html +149 -0
- data/doc/Sequencescape/Tag2Layout.html +258 -0
- data/doc/Sequencescape/Tag2LayoutTemplate.html +258 -0
- data/doc/Sequencescape/TagGroup.html +258 -0
- data/doc/Sequencescape/TagLayout.html +258 -0
- data/doc/Sequencescape/TagLayoutTemplate.html +258 -0
- data/doc/Sequencescape/Template.html +258 -0
- data/doc/Sequencescape/Transfer.html +258 -0
- data/doc/Sequencescape/TransferTemplate.html +258 -0
- data/doc/Sequencescape/Tube.html +319 -0
- data/doc/Sequencescape/TubeCreation.html +258 -0
- data/doc/Sequencescape/TubeFromTubeCreation.html +258 -0
- data/doc/Sequencescape/TubePurpose/TubeCreation.html +186 -0
- data/doc/Sequencescape/TubePurpose.html +268 -0
- data/doc/Sequencescape/User.html +258 -0
- data/doc/Sequencescape/VolumeUpdate.html +258 -0
- data/doc/Sequencescape/Well.html +362 -0
- data/doc/Sequencescape.html +121 -0
- data/doc/_index.html +1248 -0
- data/doc/class_list.html +51 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +58 -0
- data/doc/css/style.css +481 -0
- data/doc/file.README.html +76 -0
- data/doc/file_list.html +56 -0
- data/doc/frames.html +17 -0
- data/doc/index.html +76 -0
- data/doc/js/app.js +243 -0
- data/doc/js/full_list.js +216 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1411 -0
- data/doc/top-level-namespace.html +114 -0
- data/lib/sequencescape/asset.rb +10 -0
- data/lib/sequencescape/asset_audit.rb +7 -0
- data/lib/sequencescape/asset_group.rb +9 -0
- data/lib/sequencescape/bait_library.rb +14 -0
- data/lib/sequencescape/bait_library_layout.rb +9 -0
- data/lib/sequencescape/barcode_printer.rb +13 -0
- data/lib/sequencescape/barcoded_asset.rb +12 -0
- data/lib/sequencescape/batch.rb +24 -0
- data/lib/sequencescape/behaviour/barcoded.rb +15 -0
- data/lib/sequencescape/behaviour/labeled.rb +14 -0
- data/lib/sequencescape/behaviour/qced.rb +31 -0
- data/lib/sequencescape/behaviour/receptacle.rb +21 -0
- data/lib/sequencescape/behaviour/state_driven.rb +19 -0
- data/lib/sequencescape/bulk_transfer.rb +8 -0
- data/lib/sequencescape/comment.rb +7 -0
- data/lib/sequencescape/custom_metadatum_collection.rb +8 -0
- data/lib/sequencescape/lane.rb +8 -0
- data/lib/sequencescape/library_event.rb +5 -0
- data/lib/sequencescape/library_tube.rb +7 -0
- data/lib/sequencescape/locale/en.yml +190 -0
- data/lib/sequencescape/lot.rb +11 -0
- data/lib/sequencescape/lot_type.rb +20 -0
- data/lib/sequencescape/multiplexed_library_tube.rb +6 -0
- data/lib/sequencescape/order.rb +13 -0
- data/lib/sequencescape/order_template.rb +19 -0
- data/lib/sequencescape/pipeline.rb +10 -0
- data/lib/sequencescape/plate/pooling.rb +23 -0
- data/lib/sequencescape/plate/well_structure.rb +27 -0
- data/lib/sequencescape/plate.rb +71 -0
- data/lib/sequencescape/plate_conversion.rb +8 -0
- data/lib/sequencescape/plate_creation.rb +8 -0
- data/lib/sequencescape/plate_purpose.rb +24 -0
- data/lib/sequencescape/plate_template.rb +13 -0
- data/lib/sequencescape/pooled_plate_creation.rb +8 -0
- data/lib/sequencescape/project.rb +11 -0
- data/lib/sequencescape/qc_decision.rb +9 -0
- data/lib/sequencescape/qc_file.rb +14 -0
- data/lib/sequencescape/qcable.rb +17 -0
- data/lib/sequencescape/qcable_creator.rb +13 -0
- data/lib/sequencescape/request.rb +16 -0
- data/lib/sequencescape/robot.rb +5 -0
- data/lib/sequencescape/sample.rb +51 -0
- data/lib/sequencescape/sample_tube.rb +7 -0
- data/lib/sequencescape/search.rb +80 -0
- data/lib/sequencescape/specific_tube_creation.rb +8 -0
- data/lib/sequencescape/stamp.rb +9 -0
- data/lib/sequencescape/state_change.rb +11 -0
- data/lib/sequencescape/study.rb +14 -0
- data/lib/sequencescape/submission.rb +16 -0
- data/lib/sequencescape/submission_pool.rb +7 -0
- data/lib/sequencescape/tag.rb +14 -0
- data/lib/sequencescape/tag2_layout.rb +10 -0
- data/lib/sequencescape/tag2_layout_template.rb +9 -0
- data/lib/sequencescape/tag_group.rb +4 -0
- data/lib/sequencescape/tag_layout.rb +10 -0
- data/lib/sequencescape/tag_layout_template.rb +15 -0
- data/lib/sequencescape/template.rb +6 -0
- data/lib/sequencescape/transfer.rb +9 -0
- data/lib/sequencescape/transfer_request.rb +12 -0
- data/lib/sequencescape/transfer_request_collection.rb +8 -0
- data/lib/sequencescape/transfer_template.rb +9 -0
- data/lib/sequencescape/tube.rb +26 -0
- data/lib/sequencescape/tube_creation.rb +8 -0
- data/lib/sequencescape/tube_from_tube_creation.rb +8 -0
- data/lib/sequencescape/tube_purpose.rb +24 -0
- data/lib/sequencescape/user.rb +13 -0
- data/lib/sequencescape/volume_update.rb +6 -0
- data/lib/sequencescape/well.rb +19 -0
- data/lib/sequencescape/work_completion.rb +10 -0
- data/lib/sequencescape-api/actions.rb +69 -0
- data/lib/sequencescape-api/associations/base/instance_methods.rb +57 -0
- data/lib/sequencescape-api/associations/base.rb +15 -0
- data/lib/sequencescape-api/associations/belongs_to.rb +127 -0
- data/lib/sequencescape-api/associations/has_many/json.rb +10 -0
- data/lib/sequencescape-api/associations/has_many/validation.rb +37 -0
- data/lib/sequencescape-api/associations/has_many.rb +123 -0
- data/lib/sequencescape-api/associations.rb +112 -0
- data/lib/sequencescape-api/capabilities.rb +11 -0
- data/lib/sequencescape-api/composition.rb +37 -0
- data/lib/sequencescape-api/connection_factory/actions.rb +154 -0
- data/lib/sequencescape-api/connection_factory/helpers.rb +9 -0
- data/lib/sequencescape-api/connection_factory.rb +40 -0
- data/lib/sequencescape-api/core.rb +63 -0
- data/lib/sequencescape-api/core_ext/array.rb +7 -0
- data/lib/sequencescape-api/core_ext/hash.rb +18 -0
- data/lib/sequencescape-api/core_ext.rb +2 -0
- data/lib/sequencescape-api/error_handling.rb +42 -0
- data/lib/sequencescape-api/errors.rb +38 -0
- data/lib/sequencescape-api/finder_methods.rb +184 -0
- data/lib/sequencescape-api/locale/en.yml +7 -0
- data/lib/sequencescape-api/rails.rb +88 -0
- data/lib/sequencescape-api/resource/active_model.rb +17 -0
- data/lib/sequencescape-api/resource/attribute_groups.rb +94 -0
- data/lib/sequencescape-api/resource/attributes.rb +87 -0
- data/lib/sequencescape-api/resource/instance_methods.rb +24 -0
- data/lib/sequencescape-api/resource/json.rb +114 -0
- data/lib/sequencescape-api/resource/modifications.rb +111 -0
- data/lib/sequencescape-api/resource.rb +47 -0
- data/lib/sequencescape-api/resource_model_proxy.rb +44 -0
- data/lib/sequencescape-api/version.rb +5 -0
- data/lib/sequencescape-api.rb +16 -0
- data/lib/sequencescape.rb +81 -0
- data/sequencescape-api.gemspec +32 -0
- data/spec/sequencescape-api/associations_spec.rb +95 -0
- data/spec/sequencescape-api/contracts/belongs-to-association.txt +14 -0
- data/spec/sequencescape-api/contracts/client-fails-authentication.txt +6 -0
- data/spec/sequencescape-api/contracts/create-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline-nested.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many-inline.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c-has-many.txt +10 -0
- data/spec/sequencescape-api/contracts/create-model-c.txt +11 -0
- data/spec/sequencescape-api/contracts/create-via-has-many.txt +9 -0
- data/spec/sequencescape-api/contracts/model-a-instance.txt +21 -0
- data/spec/sequencescape-api/contracts/model-b-instance.txt +38 -0
- data/spec/sequencescape-api/contracts/model-c-instance-created.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance-updated.txt +17 -0
- data/spec/sequencescape-api/contracts/model-c-instance.txt +28 -0
- data/spec/sequencescape-api/contracts/model-c-invalid-attribute.txt +8 -0
- data/spec/sequencescape-api/contracts/resource-not-found.txt +6 -0
- data/spec/sequencescape-api/contracts/results-page-1.txt +17 -0
- data/spec/sequencescape-api/contracts/results-page-2.txt +18 -0
- data/spec/sequencescape-api/contracts/results-page-3.txt +17 -0
- data/spec/sequencescape-api/contracts/retrieve-belongs-to-association.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-model.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-1.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-2.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-results-page-3.txt +3 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-authorised-client.txt +5 -0
- data/spec/sequencescape-api/contracts/retrieve-root-with-an-unauthorised-client.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-a-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-b-list.txt +4 -0
- data/spec/sequencescape-api/contracts/retrieve-unauthorised-model-c-list.txt +4 -0
- data/spec/sequencescape-api/contracts/root-response-for-authorised-client.txt +20 -0
- data/spec/sequencescape-api/contracts/root-response-for-unauthorised-client.txt +28 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-a-list.txt +15 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-b-list.txt +14 -0
- data/spec/sequencescape-api/contracts/unauthorised-model-c-list.txt +15 -0
- data/spec/sequencescape-api/contracts/update-invalid-resource.txt +10 -0
- data/spec/sequencescape-api/contracts/update-model-c.txt +11 -0
- data/spec/sequencescape-api/finding_methods_spec.rb +34 -0
- data/spec/sequencescape-api/modifications_spec.rb +169 -0
- data/spec/sequencescape-api/root_spec.rb +58 -0
- data/spec/spec_helper.rb +13 -0
- data/spec/support/contract_helper.rb +112 -0
- data/spec/support/namespaces.rb +67 -0
- data/spec/support/shared_examples.rb +12 -0
- metadata +540 -0
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Class: Sequencescape::Api::PageOfResults::UpdateHandler
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<span class='title'><span class='object_link'><a href="../../../Sequencescape.html" title="Sequencescape (module)">Sequencescape</a></span></span> » <span class='title'><span class='object_link'><a href="../../Api.html" title="Sequencescape::Api (class)">Api</a></span></span> » <span class='title'><span class='object_link'><a href="../PageOfResults.html" title="Sequencescape::Api::PageOfResults (class)">PageOfResults</a></span></span>
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<span class="title">UpdateHandler</span>
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#<strong>initialize</strong>(api, json, &block) ⇒ <tt><span class='object_link'><a href="" title="Sequencescape::Api::PageOfResults (class)">PageOfResults</a></span></tt>
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<p>Returns a new instance of PageOfResults</p>
|
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 90</span>
|
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|
|
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|
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<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_api'>api</span><span class='comma'>,</span> <span class='id identifier rubyid_json'>json</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
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<span class='ivar'>@api</span><span class='comma'>,</span> <span class='ivar'>@ctor</span> <span class='op'>=</span> <span class='id identifier rubyid_api'>api</span><span class='comma'>,</span> <span class='id identifier rubyid_block'>block</span>
|
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<span class='id identifier rubyid_update_from_json'>update_from_json</span><span class='lparen'>(</span><span class='id identifier rubyid_json'>json</span><span class='rparen'>)</span>
|
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<span class='kw'>end</span></pre>
|
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|
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|
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|
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|
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#<strong>size</strong> ⇒ <tt>Object</tt> <span class="extras">(readonly)</span>
|
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|
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|
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|
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<p>Returns the value of attribute size</p>
|
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|
|
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|
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|
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<td>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 88</span>
|
|
393
|
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|
|
394
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_size'>size</span>
|
|
395
|
+
<span class='ivar'>@size</span>
|
|
396
|
+
<span class='kw'>end</span></pre>
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
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|
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<div id="instance_method_details" class="method_details_list">
|
|
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|
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<h2>Instance Method Details</h2>
|
|
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|
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|
|
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|
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|
|
409
|
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|
|
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|
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<h3 class="signature first" id="each-instance_method">
|
|
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|
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|
|
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|
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#<strong>each</strong>(&block) ⇒ <tt>Object</tt>
|
|
413
|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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<pre class="lines">
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|
|
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|
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105
|
|
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|
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106</pre>
|
|
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|
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|
|
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|
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<td>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 102</span>
|
|
432
|
+
|
|
433
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_each'>each</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
434
|
+
<span class='id identifier rubyid_walk_pages'>walk_pages</span> <span class='kw'>do</span>
|
|
435
|
+
<span class='ivar'>@objects</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
436
|
+
<span class='kw'>end</span>
|
|
437
|
+
<span class='kw'>end</span></pre>
|
|
438
|
+
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|
|
439
|
+
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|
|
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|
+
</table>
|
|
441
|
+
</div>
|
|
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|
+
|
|
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|
+
<div class="method_details ">
|
|
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|
+
<h3 class="signature " id="each_page-instance_method">
|
|
445
|
+
|
|
446
|
+
#<strong>each_page</strong>(&block) ⇒ <tt>Object</tt>
|
|
447
|
+
|
|
448
|
+
|
|
449
|
+
|
|
450
|
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|
|
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|
+
|
|
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|
+
</h3><table class="source_code">
|
|
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|
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|
|
454
|
+
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|
|
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|
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<pre class="lines">
|
|
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|
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|
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|
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|
|
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|
+
110
|
|
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|
+
111
|
|
462
|
+
112</pre>
|
|
463
|
+
</td>
|
|
464
|
+
<td>
|
|
465
|
+
<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 108</span>
|
|
466
|
+
|
|
467
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_each_page'>each_page</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
468
|
+
<span class='id identifier rubyid_walk_pages'>walk_pages</span> <span class='kw'>do</span>
|
|
469
|
+
<span class='kw'>yield</span><span class='lparen'>(</span><span class='ivar'>@objects</span><span class='period'>.</span><span class='id identifier rubyid_dup'>dup</span><span class='rparen'>)</span>
|
|
470
|
+
<span class='kw'>end</span>
|
|
471
|
+
<span class='kw'>end</span></pre>
|
|
472
|
+
</td>
|
|
473
|
+
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|
|
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|
+
</table>
|
|
475
|
+
</div>
|
|
476
|
+
|
|
477
|
+
<div class="method_details ">
|
|
478
|
+
<h3 class="signature " id="empty?-instance_method">
|
|
479
|
+
|
|
480
|
+
#<strong>empty?</strong> ⇒ <tt>Boolean</tt>
|
|
481
|
+
|
|
482
|
+
|
|
483
|
+
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
</h3><div class="docstring">
|
|
487
|
+
<div class="discussion">
|
|
488
|
+
|
|
489
|
+
|
|
490
|
+
</div>
|
|
491
|
+
</div>
|
|
492
|
+
<div class="tags">
|
|
493
|
+
|
|
494
|
+
<p class="tag_title">Returns:</p>
|
|
495
|
+
<ul class="return">
|
|
496
|
+
|
|
497
|
+
<li>
|
|
498
|
+
|
|
499
|
+
|
|
500
|
+
<span class='type'>(<tt>Boolean</tt>)</span>
|
|
501
|
+
|
|
502
|
+
|
|
503
|
+
|
|
504
|
+
</li>
|
|
505
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 95</span>
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#<strong>first</strong> ⇒ <tt>Object</tt>
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 114</span>
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<pre class="code"><span class="info file"># File 'lib/sequencescape-api/finder_methods.rb', line 119</span>
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Generated on Wed Nov 16 16:31:18 2016 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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