sequencescape-client-api 0.3.5

checksums.yaml

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+---
+SHA1:
+  metadata.gz: 9a799b5bbbee6d66f2d904d2169ace332d758eed
+  data.tar.gz: a8a6a8da4f6a90565df7c47710479dc72b3ea13e
+SHA512:
+  metadata.gz: 11ba5405d591097388d80b0043456f706e34cd9aaa656024f555d51b2b28aad55daf1f2a512efd48b6631d85b5de8b7af921d992f035e58b9fa4babfffe60d47
+  data.tar.gz: aaafda8d6632ed60a89d3ae4b731bee8b7ec56eca89d968e0a933fd8db9912f164e56be8880394a7c905e366a502e35c93bfe621a5e71946b2421084d609c85e

data/.gitignore

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+*.gem
+.bundle
+Gemfile.lock
+pkg/*
+tags
+.DS_Store
+lib/.DS_Store

data/.rspec

@@ -0,0 +1 @@
+--color

data/.rvmrc

@@ -0,0 +1,52 @@
+#!/usr/bin/env bash
+
+# This is an RVM Project .rvmrc file, used to automatically load the ruby
+# development environment upon cd'ing into the directory
+
+# First we specify our desired <ruby>[@<gemset>], the @gemset name is optional,
+# Only full ruby name is supported here, for short names use:
+#     echo "rvm use 1.9.3" > .rvmrc
+environment_id="ruby-2.3.2@sequencescape-api"
+
+# Uncomment the following lines if you want to verify rvm version per project
+# rvmrc_rvm_version="1.15.3 (master)" # 1.10.1 seams as a safe start
+# eval "$(echo ${rvm_version}.${rvmrc_rvm_version} | awk -F. '{print "[[ "$1*65536+$2*256+$3" -ge "$4*65536+$5*256+$6" ]]"}' )" || {
+#   echo "This .rvmrc file requires at least RVM ${rvmrc_rvm_version}, aborting loading."
+#   return 1
+# }
+
+# First we attempt to load the desired environment directly from the environment
+# file. This is very fast and efficient compared to running through the entire
+# CLI and selector. If you want feedback on which environment was used then
+# insert the word 'use' after --create as this triggers verbose mode.
+if [[ -d "${rvm_path:-$HOME/.rvm}/environments"
+  && -s "${rvm_path:-$HOME/.rvm}/environments/$environment_id" ]]
+then
+  \. "${rvm_path:-$HOME/.rvm}/environments/$environment_id"
+  [[ -s "${rvm_path:-$HOME/.rvm}/hooks/after_use" ]] &&
+    \. "${rvm_path:-$HOME/.rvm}/hooks/after_use" || true
+  if [[ $- == *i* ]] # check for interactive shells
+  then echo "Using: $(tput setaf 2)$GEM_HOME$(tput sgr0)" # show the user the ruby and gemset they are using in green
+  else echo "Using: $GEM_HOME" # don't use colors in non-interactive shells
+  fi
+else
+  # If the environment file has not yet been created, use the RVM CLI to select.
+  rvm --create use  "$environment_id" || {
+    echo "Failed to create RVM environment '${environment_id}'."
+    return 1
+  }
+fi
+
+# If you use bundler, this might be useful to you:
+# if [[ -s Gemfile ]] && {
+#   ! builtin command -v bundle >/dev/null ||
+#   builtin command -v bundle | GREP_OPTIONS= \grep $rvm_path/bin/bundle >/dev/null
+# }
+# then
+#   printf "%b" "The rubygem 'bundler' is not installed. Installing it now.\n"
+#   gem install bundler
+# fi
+# if [[ -s Gemfile ]] && builtin command -v bundle >/dev/null
+# then
+#   bundle install | GREP_OPTIONS= \grep -vE '^Using|Your bundle is complete'
+# fi

data/.yardoc/checksums

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+lib/sequencescape-api/resource/modifications.rb 2c4d5551237d4e2d50e002dff68abf8b832a8011
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+lib/sequencescape-api/resource/instance_methods.rb 03300e7b495518570ccec1eb1619ea0a13cf4cc6
+lib/sequencescape-api/associations/has_many/json.rb f50133b9f25791c6c63514f99616b5d57764bb07
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+lib/sequencescape-api/connection_factory/helpers.rb c4f77830272a28c001f8b95d84feb58226b548a4
+lib/sequencescape-api/associations/has_many/validation.rb e62c2386d7f29bfe3f1385964511c407e115f24c
+lib/sequencescape-api/associations/base/instance_methods.rb 7827534daffdca8052d34fba057fed79944c973e

data/Gemfile

@@ -0,0 +1,4 @@
+source "http://rubygems.org"
+
+# Specify your gem's dependencies in sequencescape-api.gemspec
+gemspec

data/README.markdown

@@ -0,0 +1,4 @@
+Sequencescape Client API
+========================
+This is the Ruby client library for the Sequencescape API.
+Documentation can be found [on the wiki](https://github.com/sanger/sequencescape-client-api/wiki).

data/Rakefile

@@ -0,0 +1,2 @@
+require 'bundler'
+Bundler::GemHelper.install_tasks

data/doc/Array.html

@@ -0,0 +1,192 @@
+<!DOCTYPE html>
+<html>
+  <head>
+    <meta charset="utf-8">
+<meta name="viewport" content="width=device-width, initial-scale=1.0">
+<title>
+  Class: Array
+  
+    &mdash; Documentation by YARD 0.9.5
+  
+</title>
+
+  <link rel="stylesheet" href="css/style.css" type="text/css" charset="utf-8" />
+
+  <link rel="stylesheet" href="css/common.css" type="text/css" charset="utf-8" />
+
+<script type="text/javascript" charset="utf-8">
+  pathId = "Array";
+  relpath = '';
+</script>
+
+
+  <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
+
+  <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
+
+
+  </head>
+  <body>
+    <div class="nav_wrap">
+      <iframe id="nav" src="class_list.html"></iframe>
+      <div id="resizer"></div>
+    </div>
+
+    <div id="main" tabindex="-1">
+      <div id="header">
+        <div id="menu">
+  
+    <a href="_index.html">Index (A)</a> &raquo;
+    
+    
+    <span class="title">Array</span>
+  
+</div>
+
+        <div id="search">
+  
+    <a class="full_list_link" id="class_list_link"
+        href="class_list.html">
+
+        <svg width="24" height="24">
+          <rect x="0" y="4" width="24" height="4" rx="1" ry="1"></rect>
+          <rect x="0" y="12" width="24" height="4" rx="1" ry="1"></rect>
+          <rect x="0" y="20" width="24" height="4" rx="1" ry="1"></rect>
+        </svg>
+    </a>
+  
+</div>
+        <div class="clear"></div>
+      </div>
+
+      <iframe id="search_frame" src="class_list.html"></iframe>
+
+      <div id="content"><h1>Class: Array
+  
+  
+  
+</h1>
+<div class="box_info">
+  
+  <dl>
+    <dt>Inherits:</dt>
+    <dd>
+      <span class="inheritName">Object</span>
+      
+        <ul class="fullTree">
+          <li>Object</li>
+          
+            <li class="next">Array</li>
+          
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      
+    </dd>
+  </dl>
+  
+
+  
+  
+  
+  
+  
+
+  
+
+  
+  <dl>
+    <dt>Defined in:</dt>
+    <dd>lib/sequencescape-api/core_ext/array.rb</dd>
+  </dl>
+  
+</div>
+
+
+
+
+
+
+
+
+  
+    <h2>
+      Instance Method Summary
+      <small><a href="#" class="summary_toggle">collapse</a></small>
+    </h2>
+
+    <ul class="summary">
+      
+        <li class="public ">
+  <span class="summary_signature">
+    
+      <a href="#or_sentence-instance_method" title="#or_sentence (instance method)">#<strong>or_sentence</strong>  &#x21d2; Object </a>
+    
+
+    
+  </span>
+  
+  
+  
+  
+  
+  
+  
+
+  
+    <span class="summary_desc"><div class='inline'></div></span>
+  
+</li>
+
+      
+    </ul>
+  
+
+
+
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+
+    
+      <div class="method_details first">
+  <h3 class="signature first" id="or_sentence-instance_method">
+  
+    #<strong>or_sentence</strong>  &#x21d2; <tt>Object</tt> 
+  
+
+  
+
+  
+</h3><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+
+
+4
+5
+6</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/sequencescape-api/core_ext/array.rb', line 4</span>
+
+<span class='kw'>def</span> <span class='id identifier rubyid_or_sentence'>or_sentence</span>
+  <span class='id identifier rubyid_to_sentence'>to_sentence</span><span class='lparen'>(</span><span class='symbol'>:two_words_connector</span> <span class='op'>=&gt;</span> <span class='tstring'><span class='tstring_beg'>&#39;</span><span class='tstring_content'> or </span><span class='tstring_end'>&#39;</span></span><span class='comma'>,</span> <span class='symbol'>:last_word_connector</span> <span class='op'>=&gt;</span> <span class='tstring'><span class='tstring_beg'>&#39;</span><span class='tstring_content'>, or </span><span class='tstring_end'>&#39;</span></span><span class='rparen'>)</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+    
+  </div>
+
+</div>
+
+      <div id="footer">
+  Generated on Wed Nov 16 16:31:18 2016 by
+  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
+  0.9.5 (ruby-2.3.0).
+</div>
+
+    </div>
+  </body>
+</html>

data/doc/BaitLibrary.html

@@ -0,0 +1,139 @@
+<!DOCTYPE html>
+<html>
+  <head>
+    <meta charset="utf-8">
+<meta name="viewport" content="width=device-width, initial-scale=1.0">
+<title>
+  Class: BaitLibrary
+  
+    &mdash; Documentation by YARD 0.9.5
+  
+</title>
+
+  <link rel="stylesheet" href="css/style.css" type="text/css" charset="utf-8" />
+
+  <link rel="stylesheet" href="css/common.css" type="text/css" charset="utf-8" />
+
+<script type="text/javascript" charset="utf-8">
+  pathId = "BaitLibrary";
+  relpath = '';
+</script>
+
+
+  <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
+
+  <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
+
+
+  </head>
+  <body>
+    <div class="nav_wrap">
+      <iframe id="nav" src="class_list.html"></iframe>
+      <div id="resizer"></div>
+    </div>
+
+    <div id="main" tabindex="-1">
+      <div id="header">
+        <div id="menu">
+  
+    <a href="_index.html">Index (B)</a> &raquo;
+    
+    
+    <span class="title">BaitLibrary</span>
+  
+</div>
+
+        <div id="search">
+  
+    <a class="full_list_link" id="class_list_link"
+        href="class_list.html">
+
+        <svg width="24" height="24">
+          <rect x="0" y="4" width="24" height="4" rx="1" ry="1"></rect>
+          <rect x="0" y="12" width="24" height="4" rx="1" ry="1"></rect>
+          <rect x="0" y="20" width="24" height="4" rx="1" ry="1"></rect>
+        </svg>
+    </a>
+  
+</div>
+        <div class="clear"></div>
+      </div>
+
+      <iframe id="search_frame" src="class_list.html"></iframe>
+
+      <div id="content"><h1>Class: BaitLibrary
+  
+  
+  
+</h1>
+<div class="box_info">
+  
+  <dl>
+    <dt>Inherits:</dt>
+    <dd>
+      <span class="inheritName">Object</span>
+      
+        <ul class="fullTree">
+          <li>Object</li>
+          
+            <li class="next">BaitLibrary</li>
+          
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      
+    </dd>
+  </dl>
+  
+
+  
+  
+  
+  
+  <dl>
+      <dt>Includes:</dt>
+      <dd><span class='object_link'><a href="Sequencescape/Api/Composition/Target.html" title="Sequencescape::Api::Composition::Target (module)">Sequencescape::Api::Composition::Target</a></span></dd>
+  </dl>
+  
+  
+
+  
+
+  
+  <dl>
+    <dt>Defined in:</dt>
+    <dd>lib/sequencescape/bait_library.rb</dd>
+  </dl>
+  
+</div>
+
+
+
+
+
+
+
+
+
+  
+  
+  
+  
+  
+  
+  <h2>Method Summary</h2>
+  
+  <h3 class="inherited">Methods included from <span class='object_link'><a href="Sequencescape/Api/Composition/Target.html" title="Sequencescape::Api::Composition::Target (module)">Sequencescape::Api::Composition::Target</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="Sequencescape/Api/Composition/Target.html#included-class_method" title="Sequencescape::Api::Composition::Target.included (method)">included</a></span>, <span class='object_link'><a href="Sequencescape/Api/Composition/Target.html#initialize-instance_method" title="Sequencescape::Api::Composition::Target#initialize (method)">#initialize</a></span></p>
+
+
+</div>
+
+      <div id="footer">
+  Generated on Wed Nov 16 16:31:17 2016 by
+  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
+  0.9.5 (ruby-2.3.0).
+</div>
+
+    </div>
+  </body>
+</html>