genevalidator 1.6.1 → 1.6.2

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Files changed (131) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +3 -1
  3. data/.travis.yml +2 -0
  4. data/README.md +78 -30
  5. data/Rakefile +11 -8
  6. data/aux/app_template_footer.erb +1 -6
  7. data/aux/app_template_header.erb +12 -32
  8. data/aux/files/css/style.css +2 -8
  9. data/aux/files/js/plots.js +564 -576
  10. data/aux/files/js/script.js +10 -0
  11. data/aux/json_footer.erb +8 -0
  12. data/aux/json_header.erb +19 -0
  13. data/aux/json_query.erb +14 -0
  14. data/aux/template_footer.erb +9 -58
  15. data/aux/template_header.erb +18 -58
  16. data/aux/template_query.erb +8 -36
  17. data/bin/genevalidator +45 -32
  18. data/genevalidator.gemspec +11 -7
  19. data/lib/genevalidator.rb +75 -455
  20. data/lib/genevalidator/arg_validation.rb +78 -107
  21. data/lib/genevalidator/blast.rb +57 -60
  22. data/lib/genevalidator/clusterization.rb +15 -15
  23. data/lib/genevalidator/exceptions.rb +32 -5
  24. data/lib/genevalidator/get_raw_sequences.rb +70 -33
  25. data/lib/genevalidator/hsp.rb +1 -4
  26. data/lib/genevalidator/json_to_gv_results.rb +109 -0
  27. data/lib/genevalidator/output.rb +177 -185
  28. data/lib/genevalidator/pool.rb +2 -1
  29. data/lib/genevalidator/sequences.rb +3 -3
  30. data/lib/genevalidator/tabular_parser.rb +24 -18
  31. data/lib/genevalidator/validation.rb +279 -0
  32. data/lib/genevalidator/validation_alignment.rb +31 -47
  33. data/lib/genevalidator/validation_blast_reading_frame.rb +19 -18
  34. data/lib/genevalidator/validation_duplication.rb +23 -19
  35. data/lib/genevalidator/validation_gene_merge.rb +30 -65
  36. data/lib/genevalidator/validation_length_cluster.rb +14 -53
  37. data/lib/genevalidator/validation_length_rank.rb +10 -11
  38. data/lib/genevalidator/validation_open_reading_frame.rb +18 -19
  39. data/lib/genevalidator/validation_report.rb +2 -5
  40. data/lib/genevalidator/validation_test.rb +8 -4
  41. data/lib/genevalidator/version.rb +1 -1
  42. data/test/test_all_validations.rb +51 -66
  43. data/test/test_blast.rb +68 -51
  44. data/test/test_clusterization.rb +1 -1
  45. data/test/test_clusterization_2d.rb +19 -13
  46. data/test/test_extended_array_methods.rb +1 -1
  47. data/test/test_files/all_validations_mrna/mrna.blast_tab6 +1806 -0
  48. data/test/test_files/all_validations_mrna/mrna.blast_tab7 +1865 -0
  49. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml → mrna.blast_xml} +18642 -1
  50. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.index → mrna.blast_xml.index} +300 -0
  51. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta → mrna.fa} +0 -0
  52. data/test/test_files/all_validations_mrna/mrna.raw_seq +3970 -0
  53. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} +901 -1
  54. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_tab → prot.blast_tab6} +416 -0
  55. data/test/test_files/all_validations_prot/prot.blast_tab7 +2400 -0
  56. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml → prot.blast_xml} +18299 -6723
  57. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.index → prot.blast_xml.index} +408 -0
  58. data/test/test_files/all_validations_prot/{all_validations_prot.fasta → prot.fa} +0 -0
  59. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq → prot.raw_seq} +2735 -0
  60. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq.idx → prot.raw_seq.idx} +3032 -1808
  61. data/test/test_sequences.rb +46 -41
  62. data/test/test_validation_open_reading_frame.rb +318 -202
  63. data/test/test_validations.rb +48 -32
  64. metadata +76 -102
  65. data/doc/AliasDuplicationError.html +0 -134
  66. data/doc/AlignmentValidation.html +0 -1687
  67. data/doc/AlignmentValidationOutput.html +0 -659
  68. data/doc/Blast.html +0 -1905
  69. data/doc/BlastRFValidationOutput.html +0 -545
  70. data/doc/BlastReadingFrameValidation.html +0 -370
  71. data/doc/BlastUtils.html +0 -875
  72. data/doc/ClasspathError.html +0 -134
  73. data/doc/Cluster.html +0 -1316
  74. data/doc/DuplciationValidationOutput.html +0 -564
  75. data/doc/DuplicationValidation.html +0 -920
  76. data/doc/DuplicationValidationOutput.html +0 -564
  77. data/doc/FileNotFoundException.html +0 -134
  78. data/doc/GeneMergeValidation.html +0 -935
  79. data/doc/GeneMergeValidationOutput.html +0 -652
  80. data/doc/HierarchicalClusterization.html +0 -994
  81. data/doc/Hsp.html +0 -1485
  82. data/doc/InconsistentTabularFormat.html +0 -135
  83. data/doc/LengthClusterValidation.html +0 -982
  84. data/doc/LengthClusterValidationOutput.html +0 -515
  85. data/doc/LengthRankValidation.html +0 -496
  86. data/doc/LengthRankValidationOutput.html +0 -517
  87. data/doc/NoInternetError.html +0 -135
  88. data/doc/NoMafftInstallationError.html +0 -134
  89. data/doc/NoPIdentError.html +0 -134
  90. data/doc/NoValidationError.html +0 -134
  91. data/doc/NotEnoughHitsError.html +0 -135
  92. data/doc/ORFValidationOutput.html +0 -593
  93. data/doc/OpenReadingFrameValidation.html +0 -1107
  94. data/doc/OtherError.html +0 -123
  95. data/doc/Output.html +0 -1540
  96. data/doc/Pair.html +0 -309
  97. data/doc/PairCluster.html +0 -767
  98. data/doc/Plot.html +0 -837
  99. data/doc/QueryError.html +0 -134
  100. data/doc/ReportClassError.html +0 -135
  101. data/doc/Sequence.html +0 -1299
  102. data/doc/SequenceTypeError.html +0 -135
  103. data/doc/TabularEntry.html +0 -837
  104. data/doc/TabularParser.html +0 -1104
  105. data/doc/Validation.html +0 -2147
  106. data/doc/ValidationClassError.html +0 -134
  107. data/doc/ValidationOutput.html +0 -460
  108. data/doc/ValidationReport.html +0 -940
  109. data/doc/ValidationTest.html +0 -939
  110. data/doc/_index.html +0 -449
  111. data/doc/class_list.html +0 -54
  112. data/doc/css/common.css +0 -1
  113. data/doc/css/full_list.css +0 -57
  114. data/doc/css/style.css +0 -338
  115. data/doc/file.README.html +0 -151
  116. data/doc/file_list.html +0 -56
  117. data/doc/frames.html +0 -26
  118. data/doc/index.html +0 -151
  119. data/doc/js/app.js +0 -214
  120. data/doc/js/full_list.js +0 -178
  121. data/doc/js/jquery.js +0 -4
  122. data/doc/method_list.html +0 -1505
  123. data/doc/top-level-namespace.html +0 -112
  124. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab +0 -967
  125. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index +0 -967
  126. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq +0 -4929
  127. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx +0 -1006
  128. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq +0 -2075
  129. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index +0 -1864
  130. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq +0 -42411
  131. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx +0 -3751
data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx DELETED
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412
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413
- sp|P53492|ACT7_ARATH:
414
- - 66841
415
- - 67245
416
- sp|A3C6D7|ACT2_ORYSJ:
417
- - 68053
418
- - 68457
419
- sp|P0C539|ACT2_ORYSI:
420
- - 69265
421
- - 69669
422
- sp|Q05214|ACT1_TOBAC:
423
- - 70477
424
- - 70881
425
- sp|P46258|ACT3_PEA:
426
- - 71685
427
- - 72087
428
- sp|P53497|ACT12_ARATH:
429
- - 72897
430
- - 73302
431
- sp|P53494|ACT4_ARATH:
432
- - 74110
433
- - 74514
434
- sp|P07829|ACT3_DICDI:
435
- - 75320
436
- - 75723
437
- sp|P30168|ACT6_SOLTU:
438
- - 76531
439
- - 76935
440
- sp|Q964E1|ACTC_BIOOB:
441
- - 77741
442
- - 78144
443
- sp|P02580|ACT3_SOYBN:
444
- - 78950
445
- - 79353
446
- sp|P12716|ACTC_PISOC:
447
- - 80159
448
- - 80562
449
- sp|Q93131|ACTC_BRAFL:
450
- - 81366
451
- - 81768
452
- sp|Q964E0|ACTC_BIOTE:
453
- - 82574
454
- - 82977
455
- sp|Q93129|ACTC_BRABE:
456
- - 83781
457
- - 84183
458
- sp|Q964E3|ACTC_BIOAL:
459
- - 84989
460
- - 85392
461
- sp|P30163|ACT2_ONCVO:
462
- - 86198
463
- - 86601
464
- sp|O17503|ACTC_BRALA:
465
- - 87405
466
- - 87807
467
- sp|P53461|ACTC_HALRO:
468
- - 88613
469
- - 89016
470
- sp|P92179|ACTC_BIOGL:
471
- - 89822
472
- - 90225
473
- sp|P30162|ACT1_ONCVO:
474
- - 91031
475
- - 91434
476
- sp|Q964E2|ACTC_BIOPF:
477
- - 92240
478
- - 92643
479
- sp|P10984|ACT2_CAEEL:
480
- - 93449
481
- - 93852
482
- sp|P53472|ACTA_STRPU:
483
- - 94658
484
- - 95061
485
- sp|P84336|ACTB_CAMDR:
486
- - 95865
487
- - 96267
488
- sp|O65316|ACT_MESVI:
489
- - 97073
490
- - 97476
491
- sp|P10986|ACT4_CAEEL:
492
- - 98282
493
- - 98685
494
- sp|Q964D9|ACTC_PLATR:
495
- - 99491
496
- - 99894
497
- sp|P0DM42|ACT3_CAEEL:
498
- - 100700
499
- - 101103
500
- sp|P0DM41|ACT1_CAEEL:
501
- - 101909
502
- - 102312
503
- sp|P41341|ACTY_LIMPO:
504
- - 103118
505
- - 103521
506
- sp|P69003|ACT1_HELTB:
507
- - 104327
508
- - 104730
509
- sp|P69002|ACT1_HELER:
510
- - 105536
511
- - 105939
512
- sp|P53470|ACT1_SCHMA:
513
- - 106745
514
- - 107148
515
- sp|Q55EU6|ACT23_DICDI:
516
- - 107920
517
- - 108306
518
- sp|O18500|ACT2_SACKO:
519
- - 109112
520
- - 109515
521
- sp|P69005|ACTD_STRPU:
522
- - 110321
523
- - 110724
524
- sp|P69004|ACT2_STRFN:
525
- - 111530
526
- - 111933
527
- sp|P17304|ACTM_APLCA:
528
- - 112739
529
- - 113142
530
- sp|P53458|ACT5_DIPDE:
531
- - 113938
532
- - 114336
533
- sp|P53465|ACT1_LYTPI:
534
- - 115142
535
- - 115545
536
- sp|Q25472|ACT2_MOLOC:
537
- - 116355
538
- - 116760
539
- sp|P53473|ACTB_STRPU:
540
- - 117566
541
- - 117969
542
- sp|P68555|ACT_TAESO:
543
- - 118773
544
- - 119175
545
- sp|P68556|ACT1_DIPDE:
546
- - 119981
547
- - 120384
548
- sp|P53460|ACT1_HALRO:
549
- - 121194
550
- - 121599
551
- sp|P10990|ACT1_STRFN:
552
- - 122405
553
- - 122808
554
- sp|P07837|ACT2_BOMMO:
555
- - 123614
556
- - 124017
557
- sp|P49128|ACT1_AEDAE:
558
- - 124823
559
- - 125226
560
- sp|Q6P640|ACTC_XENTR:
561
- - 126034
562
- - 126438
563
- sp|P68035|ACTC_RAT:
564
- - 127242
565
- - 127644
566
- sp|P68033|ACTC_MOUSE:
567
- - 128452
568
- - 128856
569
- sp|P68032|ACTC_HUMAN:
570
- - 129664
571
- - 130068
572
- sp|P68034|ACTC_CHICK:
573
- - 130876
574
- - 131280
575
- sp|Q3ZC07|ACTC_BOVIN:
576
- - 132088
577
- - 132492
578
- sp|P23343|ACT1_DAUCA:
579
- - 133306
580
- - 133713
581
- sp|P27130|ACT2_HALRO:
582
- - 134523
583
- - 134928
584
- sp|P62738|ACTA_RAT:
585
- - 135732
586
- - 136134
587
- sp|P62740|ACTA_RABIT:
588
- - 136942
589
- - 137346
590
- sp|P62737|ACTA_MOUSE:
591
- - 138154
592
- - 138558
593
- sp|P62736|ACTA_HUMAN:
594
- - 139366
595
- - 139770
596
- sp|P62739|ACTA_BOVIN:
597
- - 140578
598
- - 140982
599
- sp|P10981|ACT5_DROME:
600
- - 141788
601
- - 142191
602
- sp|Q6P8G3|ACT3_XENTR:
603
- - 142999
604
- - 143403
605
- sp|P63269|ACTH_RAT:
606
- - 144205
607
- - 144606
608
- sp|P63268|ACTH_MOUSE:
609
- - 145412
610
- - 145815
611
- sp|P63267|ACTH_HUMAN:
612
- - 146621
613
- - 147024
614
- sp|P63270|ACTH_CHICK:
615
- - 147830
616
- - 148233
617
- sp|Q5E9B5|ACTH_BOVIN:
618
- - 149039
619
- - 149442
620
- sp|P53456|ACT2_DIPDE:
621
- - 150248
622
- - 150651
623
- sp|P04752|ACT3_XENLA:
624
- - 151459
625
- - 151863
626
- sp|P53466|ACT2_LYTPI:
627
- - 152669
628
- - 153072
629
- sp|P53475|ACTN_STYCL:
630
- - 153882
631
- - 154287
632
- sp|P53459|ACT6_DIPDE:
633
- - 155087
634
- - 155487
635
- sp|P26198|ACTM_STYCL:
636
- - 156297
637
- - 156702
638
- sp|P53501|ACT3_DROME:
639
- - 157508
640
- - 157911
641
- sp|P53482|ACTSB_TAKRU:
642
- - 158721
643
- - 159126
644
- sp|P45886|ACT3_BACDO:
645
- - 159932
646
- - 160335
647
- sp|P08023|ACTA_CHICK:
648
- - 161143
649
- - 161547
650
- sp|P20399|ACT2_XENTR:
651
- - 162355
652
- - 162759
653
- sp|P04751|ACTC_XENLA:
654
- - 163567
655
- - 163971
656
- sp|Q00214|ACTM_STYPL:
657
- - 164783
658
- - 165189
659
- sp|P83968|ACT6_DROSI:
660
- - 165995
661
- - 166398
662
- sp|P83967|ACT6_DROME:
663
- - 167204
664
- - 167607
665
- sp|P83969|ACT1_BACDO:
666
- - 168413
667
- - 168816
668
- sp|O15998|ACTM_CIOSA:
669
- - 169626
670
- - 170031
671
- sp|P53480|ACTC_TAKRU:
672
- - 170839
673
- - 171243
674
- sp|P68136|ACTS_RAT:
675
- - 172047
676
- - 172449
677
- sp|P68135|ACTS_RABIT:
678
- - 173257
679
- - 173661
680
- sp|Q5R9Q5|ACTS_PONAB:
681
- - 174469
682
- - 174873
683
- sp|P68137|ACTS_PIG:
684
- - 175677
685
- - 176079
686
- sp|P68134|ACTS_MOUSE:
687
- - 176887
688
- - 177291
689
- sp|P68133|ACTS_HUMAN:
690
- - 178099
691
- - 178503
692
- sp|P68139|ACTS_CHICK:
693
- - 179311
694
- - 179715
695
- sp|P68138|ACTS_BOVIN:
696
- - 180523
697
- - 180927
698
- sp|P18601|ACT2_ARTSX:
699
- - 181733
700
- - 182136
701
- sp|P18499|ACTF_STRPU:
702
- - 182942
703
- - 183345
704
- sp|P53457|ACT3_DIPDE:
705
- - 184153
706
- - 184557
707
- sp|P53474|ACTE_STRPU:
708
- - 185363
709
- - 185766
710
- sp|Q03342|ACT3_ECHGR:
711
- - 186436
712
- - 186771
713
- sp|P10995|ACT2_XENLA:
714
- - 187579
715
- - 187983
716
- sp|Q98972|ACTS_ORYLA:
717
- - 188791
718
- - 189195
719
- sp|P50138|ACT_PUCGR:
720
- - 189997
721
- - 190398
722
- sp|P68264|ACTS_OREMO:
723
- - 191206
724
- - 191610
725
- sp|P68140|ACTSA_TAKRU:
726
- - 192420
727
- - 192825
728
- sp|Q90X97|ACTS_ATRMM:
729
- - 193633
730
- - 194037
731
- sp|P49055|ACTS_CARAU:
732
- - 194845
733
- - 195249
734
- sp|P53479|ACTS_CYPCA:
735
- - 196057
736
- - 196461
737
- sp|Q07903|ACTC_STRPU:
738
- - 197267
739
- - 197670
740
- sp|P02574|ACT4_DROME:
741
- - 198476
742
- - 198879
743
- sp|P53467|ACTM_MOLOC:
744
- - 199689
745
- - 200094
746
- sp|P48465|ACT_CRYNH:
747
- - 200896
748
- - 201297
749
- sp|Q8BFZ3|ACTBL_MOUSE:
750
- - 202105
751
- - 202509
752
- sp|P35432|ACT1_ECHGR:
753
- - 203313
754
- - 203715
755
- sp|P53689|ACT_PHARH:
756
- - 204517
757
- - 204918
758
- sp|Q562R1|ACTBL_HUMAN:
759
- - 205726
760
- - 206130
761
- sp|Q9Y702|ACT1_SCHCO:
762
- - 206934
763
- - 207336
764
- sp|Q9Y707|ACT2_SUIBO:
765
- - 208140
766
- - 208542
767
- sp|P02581|ACT1_SOYBN:
768
- - 209350
769
- - 209754
770
- sp|P43239|ACT1_PNECA:
771
- - 210558
772
- - 210960
773
- sp|P53455|ACT_AJECG:
774
- - 211762
775
- - 212163
776
- sp|P07828|ACT18_DICDI:
777
- - 212979
778
- - 213387
779
- sp|Q03341|ACT2_ECHGR:
780
- - 214193
781
- - 214596
782
- sp|Q6S8J3|POTEE_HUMAN:
783
- - 216820
784
- - 217932
785
- sp|O17502|ACTM_BRALA:
786
- - 218746
787
- - 219153
788
- sp|P27131|ACT1_NAEFO:
789
- - 219957
790
- - 220359
791
- sp|P93375|ACT7_TOBAC:
792
- - 221085
793
- - 221448
794
- sp|O74258|ACT_OGAPD:
795
- - 222252
796
- - 222654
797
- sp|P10365|ACT_THELA:
798
- - 223456
799
- - 223857
800
- sp|Q9Y701|ACT1_SUIBO:
801
- - 224661
802
- - 225063
803
- sp|A5A3E0|POTEF_HUMAN:
804
- - 227287
805
- - 228399
806
- sp|A5DQP9|ACT_PICGU:
807
- - 229171
808
- - 229557
809
- sp|Q93132|ACTM_BRAFL:
810
- - 230367
811
- - 230772
812
- sp|P0CG38|POTEI_HUMAN:
813
- - 232996
814
- - 234108
815
- sp|Q9BYX7|ACTBM_HUMAN:
816
- - 234914
817
- - 235317
818
- sp|Q9UVZ8|ACT_CANDC:
819
- - 236121
820
- - 236523
821
- sp|P14235|ACT_CANAX:
822
- - 237327
823
- - 237729
824
- sp|Q93130|ACTM_BRABE:
825
- - 238541
826
- - 238947
827
- sp|P26183|ACT_CRYPV:
828
- - 239751
829
- - 240153
830
- sp|P93373|ACT3_TOBAC:
831
- - 240885
832
- - 241251
833
- sp|P0CG39|POTEJ_HUMAN:
834
- - 243399
835
- - 244473
836
- sp|Q2U7A3|ACT_ASPOR:
837
- - 245275
838
- - 245676
839
- sp|Q9UVX4|ACT_COPC7:
840
- - 246478
841
- - 246879
842
- sp|P45521|ACT_PROCL:
843
- - 247575
844
- - 247923
845
- sp|P53483|ACTX_TAKRU:
846
- - 248729
847
- - 249132
848
- sp|P86287|ACT1_PLAFX:
849
- - 249938
850
- - 250341
851
- sp|Q8I4X0|ACT1_PLAF7:
852
- - 251147
853
- - 251550
854
- sp|Q7RME1|ACT1_PLAYO:
855
- - 252356
856
- - 252759
857
- sp|P10988|ACT1_PLAFO:
858
- - 253565
859
- - 253968
860
- sp|Q4Z1L3|ACT1_PLABA:
861
- - 254772
862
- - 255174
863
- sp|P30169|ACT7_SOLTU:
864
- - 255982
865
- - 256386
866
- sp|Q9NJV4|ACT1_NAEGR:
867
- - 257188
868
- - 257589
869
- sp|P23344|ACT2_DAUCA:
870
- - 258405
871
- - 258813
872
- sp|P10993|ACT2_TETPY:
873
- - 259619
874
- - 260022
875
- sp|P53491|ACT_ACEPE:
876
- - 260780
877
- - 261159
878
- sp|P10992|ACT1_TETTH:
879
- - 261965
880
- - 262368
881
- sp|Q9Y896|ACT2_SCHCO:
882
- - 263172
883
- - 263574
884
- sp|Q554S6|ACT17_DICDI:
885
- - 264378
886
- - 264780
887
- sp|Q54HF1|ACT24_DICDI:
888
- - 265590
889
- - 265995
890
- sp|P27132|ACT2_NAEFO:
891
- - 266791
892
- - 267189
893
- sp|P53499|ACT_CHOCR:
894
- - 267987
895
- - 268386
896
- sp|Q54HF0|ACT25_DICDI:
897
- - 269212
898
- - 269625
899
- sp|Q4YU79|ACT2_PLABA:
900
- - 270431
901
- - 270834
902
- sp|P24263|ACTD_PHYPO:
903
- - 271622
904
- - 272016
905
- sp|P12433|ACT2_TRYBB:
906
- - 272822
907
- - 273225
908
- sp|P12432|ACT1_TRYBB:
909
- - 274031
910
- - 274434
911
- sp|P53477|ACT_TRYCR:
912
- - 275238
913
- - 275640
914
- sp|P93738|ACT9_ARATH:
915
- - 276426
916
- - 276819
917
- sp|P45520|ACT_LEIMA:
918
- - 277623
919
- - 278025
920
- sp|Q10AZ4|ACT3_ORYSJ:
921
- - 278833
922
- - 279237
923
- sp|A2XNS1|ACT3_ORYSI:
924
- - 280045
925
- - 280449
926
- sp|P30171|ACT11_SOLTU:
927
- - 281259
928
- - 281664
929
- sp|P81228|ACT5_SOLTU:
930
- - 282390
931
- - 282753
932
- sp|P53504|ACT1_SORBI:
933
- - 283561
934
- - 283965
935
- sp|P93371|ACT5_TOBAC:
936
- - 284691
937
- - 285054
938
- sp|O81221|ACT_GOSHI:
939
- - 285860
940
- - 286263
941
- sp|P93372|ACT4_TOBAC:
942
- - 286989
943
- - 287352
944
- sp|P30164|ACT1_PEA:
945
- - 288154
946
- - 288555
947
- sp|P81229|ACT8_SOLTU:
948
- - 289281
949
- - 289644
950
- sp|P30172|ACT12_SOLTU:
951
- - 290414
952
- - 290799
953
- sp|P30173|ACT13_SOLTU:
954
- - 291609
955
- - 292014
956
- sp|P30167|ACT3_SOLTU:
957
- - 292822
958
- - 293226
959
- sp|P93376|ACT6_TOBAC:
960
- - 293952
961
- - 294315
962
- sp|Q96484|ACT3_SOLLC:
963
- - 295041
964
- - 295404
965
- sp|Q96483|ACT2_SOLLC:
966
- - 296130
967
- - 296493
968
- sp|Q96482|ACT1_SOLLC:
969
- - 297219
970
- - 297582
971
- sp|P30165|ACT2_PEA:
972
- - 298384
973
- - 298785
974
- sp|P93584|ACT9_SOLTU:
975
- - 299511
976
- - 299874
977
- sp|Q10DV7|ACT1_ORYSJ:
978
- - 300682
979
- - 301086
980
- sp|A2XLF2|ACT1_ORYSI:
981
- - 301894
982
- - 302298
983
- sp|P53496|ACT11_ARATH:
984
- - 303108
985
- - 303513
986
- sp|P0CJ47|ACT3_ARATH:
987
- - 304321
988
- - 304725
989
- sp|P0CJ46|ACT1_ARATH:
990
- - 305533
991
- - 305937
992
- sp|P02582|ACT1_MAIZE:
993
- - 306741
994
- - 307143
995
- sp|P02576|ACTA_PHYPO:
996
- - 307949
997
- - 308352
998
- sp|Q96292|ACT2_ARATH:
999
- - 309160
1000
- - 309564
1001
- sp|Q96293|ACT8_ARATH:
1002
- - 310372
1003
- - 310776
1004
- sp|Q54GX7|ACT10_DICDI:
1005
- - 311584
1006
- - 311987