genevalidator 1.6.1 → 1.6.2

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Files changed (131) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +3 -1
  3. data/.travis.yml +2 -0
  4. data/README.md +78 -30
  5. data/Rakefile +11 -8
  6. data/aux/app_template_footer.erb +1 -6
  7. data/aux/app_template_header.erb +12 -32
  8. data/aux/files/css/style.css +2 -8
  9. data/aux/files/js/plots.js +564 -576
  10. data/aux/files/js/script.js +10 -0
  11. data/aux/json_footer.erb +8 -0
  12. data/aux/json_header.erb +19 -0
  13. data/aux/json_query.erb +14 -0
  14. data/aux/template_footer.erb +9 -58
  15. data/aux/template_header.erb +18 -58
  16. data/aux/template_query.erb +8 -36
  17. data/bin/genevalidator +45 -32
  18. data/genevalidator.gemspec +11 -7
  19. data/lib/genevalidator.rb +75 -455
  20. data/lib/genevalidator/arg_validation.rb +78 -107
  21. data/lib/genevalidator/blast.rb +57 -60
  22. data/lib/genevalidator/clusterization.rb +15 -15
  23. data/lib/genevalidator/exceptions.rb +32 -5
  24. data/lib/genevalidator/get_raw_sequences.rb +70 -33
  25. data/lib/genevalidator/hsp.rb +1 -4
  26. data/lib/genevalidator/json_to_gv_results.rb +109 -0
  27. data/lib/genevalidator/output.rb +177 -185
  28. data/lib/genevalidator/pool.rb +2 -1
  29. data/lib/genevalidator/sequences.rb +3 -3
  30. data/lib/genevalidator/tabular_parser.rb +24 -18
  31. data/lib/genevalidator/validation.rb +279 -0
  32. data/lib/genevalidator/validation_alignment.rb +31 -47
  33. data/lib/genevalidator/validation_blast_reading_frame.rb +19 -18
  34. data/lib/genevalidator/validation_duplication.rb +23 -19
  35. data/lib/genevalidator/validation_gene_merge.rb +30 -65
  36. data/lib/genevalidator/validation_length_cluster.rb +14 -53
  37. data/lib/genevalidator/validation_length_rank.rb +10 -11
  38. data/lib/genevalidator/validation_open_reading_frame.rb +18 -19
  39. data/lib/genevalidator/validation_report.rb +2 -5
  40. data/lib/genevalidator/validation_test.rb +8 -4
  41. data/lib/genevalidator/version.rb +1 -1
  42. data/test/test_all_validations.rb +51 -66
  43. data/test/test_blast.rb +68 -51
  44. data/test/test_clusterization.rb +1 -1
  45. data/test/test_clusterization_2d.rb +19 -13
  46. data/test/test_extended_array_methods.rb +1 -1
  47. data/test/test_files/all_validations_mrna/mrna.blast_tab6 +1806 -0
  48. data/test/test_files/all_validations_mrna/mrna.blast_tab7 +1865 -0
  49. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml → mrna.blast_xml} +18642 -1
  50. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.index → mrna.blast_xml.index} +300 -0
  51. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta → mrna.fa} +0 -0
  52. data/test/test_files/all_validations_mrna/mrna.raw_seq +3970 -0
  53. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} +901 -1
  54. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_tab → prot.blast_tab6} +416 -0
  55. data/test/test_files/all_validations_prot/prot.blast_tab7 +2400 -0
  56. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml → prot.blast_xml} +18299 -6723
  57. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.index → prot.blast_xml.index} +408 -0
  58. data/test/test_files/all_validations_prot/{all_validations_prot.fasta → prot.fa} +0 -0
  59. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq → prot.raw_seq} +2735 -0
  60. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq.idx → prot.raw_seq.idx} +3032 -1808
  61. data/test/test_sequences.rb +46 -41
  62. data/test/test_validation_open_reading_frame.rb +318 -202
  63. data/test/test_validations.rb +48 -32
  64. metadata +76 -102
  65. data/doc/AliasDuplicationError.html +0 -134
  66. data/doc/AlignmentValidation.html +0 -1687
  67. data/doc/AlignmentValidationOutput.html +0 -659
  68. data/doc/Blast.html +0 -1905
  69. data/doc/BlastRFValidationOutput.html +0 -545
  70. data/doc/BlastReadingFrameValidation.html +0 -370
  71. data/doc/BlastUtils.html +0 -875
  72. data/doc/ClasspathError.html +0 -134
  73. data/doc/Cluster.html +0 -1316
  74. data/doc/DuplciationValidationOutput.html +0 -564
  75. data/doc/DuplicationValidation.html +0 -920
  76. data/doc/DuplicationValidationOutput.html +0 -564
  77. data/doc/FileNotFoundException.html +0 -134
  78. data/doc/GeneMergeValidation.html +0 -935
  79. data/doc/GeneMergeValidationOutput.html +0 -652
  80. data/doc/HierarchicalClusterization.html +0 -994
  81. data/doc/Hsp.html +0 -1485
  82. data/doc/InconsistentTabularFormat.html +0 -135
  83. data/doc/LengthClusterValidation.html +0 -982
  84. data/doc/LengthClusterValidationOutput.html +0 -515
  85. data/doc/LengthRankValidation.html +0 -496
  86. data/doc/LengthRankValidationOutput.html +0 -517
  87. data/doc/NoInternetError.html +0 -135
  88. data/doc/NoMafftInstallationError.html +0 -134
  89. data/doc/NoPIdentError.html +0 -134
  90. data/doc/NoValidationError.html +0 -134
  91. data/doc/NotEnoughHitsError.html +0 -135
  92. data/doc/ORFValidationOutput.html +0 -593
  93. data/doc/OpenReadingFrameValidation.html +0 -1107
  94. data/doc/OtherError.html +0 -123
  95. data/doc/Output.html +0 -1540
  96. data/doc/Pair.html +0 -309
  97. data/doc/PairCluster.html +0 -767
  98. data/doc/Plot.html +0 -837
  99. data/doc/QueryError.html +0 -134
  100. data/doc/ReportClassError.html +0 -135
  101. data/doc/Sequence.html +0 -1299
  102. data/doc/SequenceTypeError.html +0 -135
  103. data/doc/TabularEntry.html +0 -837
  104. data/doc/TabularParser.html +0 -1104
  105. data/doc/Validation.html +0 -2147
  106. data/doc/ValidationClassError.html +0 -134
  107. data/doc/ValidationOutput.html +0 -460
  108. data/doc/ValidationReport.html +0 -940
  109. data/doc/ValidationTest.html +0 -939
  110. data/doc/_index.html +0 -449
  111. data/doc/class_list.html +0 -54
  112. data/doc/css/common.css +0 -1
  113. data/doc/css/full_list.css +0 -57
  114. data/doc/css/style.css +0 -338
  115. data/doc/file.README.html +0 -151
  116. data/doc/file_list.html +0 -56
  117. data/doc/frames.html +0 -26
  118. data/doc/index.html +0 -151
  119. data/doc/js/app.js +0 -214
  120. data/doc/js/full_list.js +0 -178
  121. data/doc/js/jquery.js +0 -4
  122. data/doc/method_list.html +0 -1505
  123. data/doc/top-level-namespace.html +0 -112
  124. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab +0 -967
  125. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index +0 -967
  126. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq +0 -4929
  127. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx +0 -1006
  128. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq +0 -2075
  129. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index +0 -1864
  130. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq +0 -42411
  131. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx +0 -3751
data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index DELETED
@@ -1,967 +0,0 @@
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- sp|P01329|INS_CAVPO
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- sp|C0HJI3|INS2_KATPE
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- sp|C0HJI5|INS1_THUOR
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- sp|P12705|INS_TORMA
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- sp|P83770|INSL_VIGUN
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- sp|Q02815|IGF1_ONCMY
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- sp|P17085|IGF1_ONCKI
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- sp|Q02816|IGF2_ONCMY
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- sp|P51462|IGF1_COTJA
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- sp|P33717|IGF2_CHICK
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- sp|Q90326|IGF1B_CYPCA
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- sp|P22618|IGF_MYXGL
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- sp|Q90325|IGF1A_CYPCA
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- sp|P07456|IGF2_BOVIN
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- sp|P10764|IGF2_SHEEP
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- sp|Q90WW4|IGF2A_XENLA
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- sp|P16501|IGF1A_XENLA
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- sp|Q95222|IGF1_RABIT
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- sp|P51459|IGF2_HORSE
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290
- sp|P01328|INS_HYSCR
291
- sp|P01328|INS_HYSCR
292
- sp|Q9TQY7|INS_ORNAN
293
- sp|Q9TQY7|INS_ORNAN
294
- sp|P01329|INS_CAVPO
295
- sp|P01329|INS_CAVPO
296
- sp|P12705|INS_TORMA
297
- sp|P12705|INS_TORMA
298
- sp|P07453|INS_MYOSC
299
- sp|P07453|INS_MYOSC
300
- sp|P81881|INS_PIAME
301
- sp|P81881|INS_PIAME
302
- sp|P01337|INS1_BATSP
303
- sp|P01337|INS1_BATSP
304
- sp|P01340|INS_KATPE
305
- sp|P01340|INS_KATPE
306
- sp|P12704|INS_SQUAC
307
- sp|P12704|INS_SQUAC
308
- sp|P01338|INS2_BATSP
309
- sp|P01338|INS2_BATSP
310
- sp|P83770|INSL_VIGUN
311
- sp|P83770|INSL_VIGUN
312
- sp|P22334|ILP_BRACL
313
- sp|P33717|IGF2_CHICK
314
- sp|Q02815|IGF1_ONCMY
315
- sp|P17085|IGF1_ONCKI
316
- sp|P22618|IGF_MYXGL
317
- sp|P10764|IGF2_SHEEP
318
- sp|Q90325|IGF1A_CYPCA
319
- sp|Q90326|IGF1B_CYPCA
320
- sp|P07456|IGF2_BOVIN
321
- sp|Q08279|IGF2_CAVPO
322
- sp|Q28933|IGF1_SUNMU
323
- sp|P51459|IGF2_HORSE
324
- sp|P01344|IGF2_HUMAN
325
- sp|P23695|IGF2_PIG
326
- sp|P51462|IGF1_COTJA
327
- sp|P17647|IGF1_CAVPO
328
- sp|Q6INW9|IGF2B_XENLA
329
- sp|Q02816|IGF2_ONCMY
330
- sp|P51458|IGF1_HORSE
331
- sp|Q90WW4|IGF2A_XENLA
332
- sp|Q6GUL6|IGF1_PANTA
333
- sp|P10763|IGF1_SHEEP
334
- sp|Q9D067|MDM1_MOUSE
335
- sp|Q5PQN4|MDM1_RAT
336
- sp|Q8TC05|MDM1_HUMAN
337
- sp|Q5RC32|MDM1_PONAB
338
- sp|Q5ZMW6|MDM1_CHICK
339
- sp|Q5RHU7|MDM1_DANRE
340
- sp|Q9D067|MDM1_MOUSE
341
- sp|Q9D067|MDM1_MOUSE
342
- sp|Q5PQN4|MDM1_RAT
343
- sp|Q5PQN4|MDM1_RAT
344
- sp|Q8TC05|MDM1_HUMAN
345
- sp|Q8TC05|MDM1_HUMAN
346
- sp|Q5RC32|MDM1_PONAB
347
- sp|Q5RC32|MDM1_PONAB
348
- sp|Q5ZMW6|MDM1_CHICK
349
- sp|Q5ZMW6|MDM1_CHICK
350
- sp|Q5RHU7|MDM1_DANRE
351
- sp|Q5RHU7|MDM1_DANRE
352
- sp|Q9D067|MDM1_MOUSE
353
- sp|Q9D067|MDM1_MOUSE
354
- sp|Q9D067|MDM1_MOUSE
355
- sp|Q5PQN4|MDM1_RAT
356
- sp|Q5PQN4|MDM1_RAT
357
- sp|Q5PQN4|MDM1_RAT
358
- sp|Q8TC05|MDM1_HUMAN
359
- sp|Q8TC05|MDM1_HUMAN
360
- sp|Q8TC05|MDM1_HUMAN
361
- sp|Q5RC32|MDM1_PONAB
362
- sp|Q5RC32|MDM1_PONAB
363
- sp|Q5RC32|MDM1_PONAB
364
- sp|Q5ZMW6|MDM1_CHICK
365
- sp|Q5ZMW6|MDM1_CHICK
366
- sp|Q5RHU7|MDM1_DANRE
367
- sp|Q5RHU7|MDM1_DANRE
368
- sp|P0C540|ACT7_ORYSJ
369
- sp|P0C540|ACT7_ORYSJ
370
- sp|P0C540|ACT7_ORYSJ
371
- sp|P0C542|ACT7_ORYSI
372
- sp|P0C542|ACT7_ORYSI
373
- sp|P0C542|ACT7_ORYSI
374
- sp|P53492|ACT7_ARATH
375
- sp|P53492|ACT7_ARATH
376
- sp|P53492|ACT7_ARATH
377
- sp|A3C6D7|ACT2_ORYSJ
378
- sp|A3C6D7|ACT2_ORYSJ
379
- sp|A3C6D7|ACT2_ORYSJ
380
- sp|P0C539|ACT2_ORYSI
381
- sp|P0C539|ACT2_ORYSI
382
- sp|P0C539|ACT2_ORYSI
383
- sp|Q05214|ACT1_TOBAC
384
- sp|Q05214|ACT1_TOBAC
385
- sp|Q05214|ACT1_TOBAC
386
- sp|P46258|ACT3_PEA
387
- sp|P46258|ACT3_PEA
388
- sp|P46258|ACT3_PEA
389
- sp|P53497|ACT12_ARATH
390
- sp|P53497|ACT12_ARATH
391
- sp|P53497|ACT12_ARATH
392
- sp|P53494|ACT4_ARATH
393
- sp|P53494|ACT4_ARATH
394
- sp|P53494|ACT4_ARATH
395
- sp|P07829|ACT3_DICDI
396
- sp|P07829|ACT3_DICDI
397
- sp|P07829|ACT3_DICDI
398
- sp|P30168|ACT6_SOLTU
399
- sp|P30168|ACT6_SOLTU
400
- sp|P30168|ACT6_SOLTU
401
- sp|Q964E1|ACTC_BIOOB
402
- sp|Q964E1|ACTC_BIOOB
403
- sp|Q964E1|ACTC_BIOOB
404
- sp|P02580|ACT3_SOYBN
405
- sp|P02580|ACT3_SOYBN
406
- sp|P02580|ACT3_SOYBN
407
- sp|P12716|ACTC_PISOC
408
- sp|P12716|ACTC_PISOC
409
- sp|P12716|ACTC_PISOC
410
- sp|Q93131|ACTC_BRAFL
411
- sp|Q93131|ACTC_BRAFL
412
- sp|Q93131|ACTC_BRAFL
413
- sp|Q964E0|ACTC_BIOTE
414
- sp|Q964E0|ACTC_BIOTE
415
- sp|Q964E0|ACTC_BIOTE
416
- sp|Q93129|ACTC_BRABE
417
- sp|Q93129|ACTC_BRABE
418
- sp|Q93129|ACTC_BRABE
419
- sp|Q964E3|ACTC_BIOAL
420
- sp|Q964E3|ACTC_BIOAL
421
- sp|Q964E3|ACTC_BIOAL
422
- sp|P30163|ACT2_ONCVO
423
- sp|P30163|ACT2_ONCVO
424
- sp|P30163|ACT2_ONCVO
425
- sp|O17503|ACTC_BRALA
426
- sp|O17503|ACTC_BRALA
427
- sp|O17503|ACTC_BRALA
428
- sp|P53461|ACTC_HALRO
429
- sp|P53461|ACTC_HALRO
430
- sp|P53461|ACTC_HALRO
431
- sp|P92179|ACTC_BIOGL
432
- sp|P92179|ACTC_BIOGL
433
- sp|P92179|ACTC_BIOGL
434
- sp|P30162|ACT1_ONCVO
435
- sp|P30162|ACT1_ONCVO
436
- sp|P30162|ACT1_ONCVO
437
- sp|Q964E2|ACTC_BIOPF
438
- sp|Q964E2|ACTC_BIOPF
439
- sp|Q964E2|ACTC_BIOPF
440
- sp|P10984|ACT2_CAEEL
441
- sp|P10984|ACT2_CAEEL
442
- sp|P10984|ACT2_CAEEL
443
- sp|P53472|ACTA_STRPU
444
- sp|P53472|ACTA_STRPU
445
- sp|P53472|ACTA_STRPU
446
- sp|P84336|ACTB_CAMDR
447
- sp|P84336|ACTB_CAMDR
448
- sp|P84336|ACTB_CAMDR
449
- sp|O65316|ACT_MESVI
450
- sp|O65316|ACT_MESVI
451
- sp|O65316|ACT_MESVI
452
- sp|P10986|ACT4_CAEEL
453
- sp|P10986|ACT4_CAEEL
454
- sp|P10986|ACT4_CAEEL
455
- sp|Q964D9|ACTC_PLATR
456
- sp|Q964D9|ACTC_PLATR
457
- sp|Q964D9|ACTC_PLATR
458
- sp|P0DM42|ACT3_CAEEL
459
- sp|P0DM42|ACT3_CAEEL
460
- sp|P0DM42|ACT3_CAEEL
461
- sp|P0DM41|ACT1_CAEEL
462
- sp|P0DM41|ACT1_CAEEL
463
- sp|P0DM41|ACT1_CAEEL
464
- sp|P41341|ACTY_LIMPO
465
- sp|P41341|ACTY_LIMPO
466
- sp|P41341|ACTY_LIMPO
467
- sp|P69003|ACT1_HELTB
468
- sp|P69003|ACT1_HELTB
469
- sp|P69003|ACT1_HELTB
470
- sp|P69002|ACT1_HELER
471
- sp|P69002|ACT1_HELER
472
- sp|P69002|ACT1_HELER
473
- sp|P53470|ACT1_SCHMA
474
- sp|P53470|ACT1_SCHMA
475
- sp|P53470|ACT1_SCHMA
476
- sp|Q55EU6|ACT23_DICDI
477
- sp|Q55EU6|ACT23_DICDI
478
- sp|Q55EU6|ACT23_DICDI
479
- sp|O18500|ACT2_SACKO
480
- sp|O18500|ACT2_SACKO
481
- sp|O18500|ACT2_SACKO
482
- sp|P69005|ACTD_STRPU
483
- sp|P69005|ACTD_STRPU
484
- sp|P69005|ACTD_STRPU
485
- sp|P69004|ACT2_STRFN
486
- sp|P69004|ACT2_STRFN
487
- sp|P69004|ACT2_STRFN
488
- sp|P17304|ACTM_APLCA
489
- sp|P17304|ACTM_APLCA
490
- sp|P17304|ACTM_APLCA
491
- sp|P53458|ACT5_DIPDE
492
- sp|P53458|ACT5_DIPDE
493
- sp|P53458|ACT5_DIPDE
494
- sp|P53465|ACT1_LYTPI
495
- sp|P53465|ACT1_LYTPI
496
- sp|P53465|ACT1_LYTPI
497
- sp|Q25472|ACT2_MOLOC
498
- sp|Q25472|ACT2_MOLOC
499
- sp|Q25472|ACT2_MOLOC
500
- sp|P53473|ACTB_STRPU
501
- sp|P53473|ACTB_STRPU
502
- sp|P53473|ACTB_STRPU
503
- sp|P68555|ACT_TAESO
504
- sp|P68555|ACT_TAESO
505
- sp|P68555|ACT_TAESO
506
- sp|P68556|ACT1_DIPDE
507
- sp|P68556|ACT1_DIPDE
508
- sp|P68556|ACT1_DIPDE
509
- sp|P53460|ACT1_HALRO
510
- sp|P53460|ACT1_HALRO
511
- sp|P53460|ACT1_HALRO
512
- sp|P10990|ACT1_STRFN
513
- sp|P10990|ACT1_STRFN
514
- sp|P10990|ACT1_STRFN
515
- sp|P07837|ACT2_BOMMO
516
- sp|P07837|ACT2_BOMMO
517
- sp|P07837|ACT2_BOMMO
518
- sp|P49128|ACT1_AEDAE
519
- sp|P49128|ACT1_AEDAE
520
- sp|P49128|ACT1_AEDAE
521
- sp|Q6P640|ACTC_XENTR
522
- sp|Q6P640|ACTC_XENTR
523
- sp|Q6P640|ACTC_XENTR
524
- sp|P68035|ACTC_RAT
525
- sp|P68035|ACTC_RAT
526
- sp|P68035|ACTC_RAT
527
- sp|P68033|ACTC_MOUSE
528
- sp|P68033|ACTC_MOUSE
529
- sp|P68033|ACTC_MOUSE
530
- sp|P68032|ACTC_HUMAN
531
- sp|P68032|ACTC_HUMAN
532
- sp|P68032|ACTC_HUMAN
533
- sp|P68034|ACTC_CHICK
534
- sp|P68034|ACTC_CHICK
535
- sp|P68034|ACTC_CHICK
536
- sp|Q3ZC07|ACTC_BOVIN
537
- sp|Q3ZC07|ACTC_BOVIN
538
- sp|Q3ZC07|ACTC_BOVIN
539
- sp|P23343|ACT1_DAUCA
540
- sp|P23343|ACT1_DAUCA
541
- sp|P23343|ACT1_DAUCA
542
- sp|P27130|ACT2_HALRO
543
- sp|P27130|ACT2_HALRO
544
- sp|P27130|ACT2_HALRO
545
- sp|P62738|ACTA_RAT
546
- sp|P62738|ACTA_RAT
547
- sp|P62738|ACTA_RAT
548
- sp|P62740|ACTA_RABIT
549
- sp|P62740|ACTA_RABIT
550
- sp|P62740|ACTA_RABIT
551
- sp|P62737|ACTA_MOUSE
552
- sp|P62737|ACTA_MOUSE
553
- sp|P62737|ACTA_MOUSE
554
- sp|P62736|ACTA_HUMAN
555
- sp|P62736|ACTA_HUMAN
556
- sp|P62736|ACTA_HUMAN
557
- sp|P62739|ACTA_BOVIN
558
- sp|P62739|ACTA_BOVIN
559
- sp|P62739|ACTA_BOVIN
560
- sp|P10981|ACT5_DROME
561
- sp|P10981|ACT5_DROME
562
- sp|P10981|ACT5_DROME
563
- sp|Q6P8G3|ACT3_XENTR
564
- sp|Q6P8G3|ACT3_XENTR
565
- sp|Q6P8G3|ACT3_XENTR
566
- sp|P63269|ACTH_RAT
567
- sp|P63269|ACTH_RAT
568
- sp|P63269|ACTH_RAT
569
- sp|P63268|ACTH_MOUSE
570
- sp|P63268|ACTH_MOUSE
571
- sp|P63268|ACTH_MOUSE
572
- sp|P63267|ACTH_HUMAN
573
- sp|P63267|ACTH_HUMAN
574
- sp|P63267|ACTH_HUMAN
575
- sp|P63270|ACTH_CHICK
576
- sp|P63270|ACTH_CHICK
577
- sp|P63270|ACTH_CHICK
578
- sp|Q5E9B5|ACTH_BOVIN
579
- sp|Q5E9B5|ACTH_BOVIN
580
- sp|Q5E9B5|ACTH_BOVIN
581
- sp|P53456|ACT2_DIPDE
582
- sp|P53456|ACT2_DIPDE
583
- sp|P53456|ACT2_DIPDE
584
- sp|P04752|ACT3_XENLA
585
- sp|P04752|ACT3_XENLA
586
- sp|P04752|ACT3_XENLA
587
- sp|P53466|ACT2_LYTPI
588
- sp|P53466|ACT2_LYTPI
589
- sp|P53466|ACT2_LYTPI
590
- sp|P53475|ACTN_STYCL
591
- sp|P53475|ACTN_STYCL
592
- sp|P53475|ACTN_STYCL
593
- sp|P53459|ACT6_DIPDE
594
- sp|P53459|ACT6_DIPDE
595
- sp|P53459|ACT6_DIPDE
596
- sp|P26198|ACTM_STYCL
597
- sp|P26198|ACTM_STYCL
598
- sp|P26198|ACTM_STYCL
599
- sp|P53501|ACT3_DROME
600
- sp|P53501|ACT3_DROME
601
- sp|P53501|ACT3_DROME
602
- sp|P53482|ACTSB_TAKRU
603
- sp|P53482|ACTSB_TAKRU
604
- sp|P53482|ACTSB_TAKRU
605
- sp|P45886|ACT3_BACDO
606
- sp|P45886|ACT3_BACDO
607
- sp|P45886|ACT3_BACDO
608
- sp|P08023|ACTA_CHICK
609
- sp|P08023|ACTA_CHICK
610
- sp|P08023|ACTA_CHICK
611
- sp|P20399|ACT2_XENTR
612
- sp|P20399|ACT2_XENTR
613
- sp|P20399|ACT2_XENTR
614
- sp|P04751|ACTC_XENLA
615
- sp|P04751|ACTC_XENLA
616
- sp|P04751|ACTC_XENLA
617
- sp|Q00214|ACTM_STYPL
618
- sp|Q00214|ACTM_STYPL
619
- sp|Q00214|ACTM_STYPL
620
- sp|P83968|ACT6_DROSI
621
- sp|P83968|ACT6_DROSI
622
- sp|P83968|ACT6_DROSI
623
- sp|P83967|ACT6_DROME
624
- sp|P83967|ACT6_DROME
625
- sp|P83967|ACT6_DROME
626
- sp|P83969|ACT1_BACDO
627
- sp|P83969|ACT1_BACDO
628
- sp|P83969|ACT1_BACDO
629
- sp|O15998|ACTM_CIOSA
630
- sp|O15998|ACTM_CIOSA
631
- sp|O15998|ACTM_CIOSA
632
- sp|P53480|ACTC_TAKRU
633
- sp|P53480|ACTC_TAKRU
634
- sp|P53480|ACTC_TAKRU
635
- sp|P68136|ACTS_RAT
636
- sp|P68136|ACTS_RAT
637
- sp|P68136|ACTS_RAT
638
- sp|P68135|ACTS_RABIT
639
- sp|P68135|ACTS_RABIT
640
- sp|P68135|ACTS_RABIT
641
- sp|Q5R9Q5|ACTS_PONAB
642
- sp|Q5R9Q5|ACTS_PONAB
643
- sp|Q5R9Q5|ACTS_PONAB
644
- sp|P68137|ACTS_PIG
645
- sp|P68137|ACTS_PIG
646
- sp|P68137|ACTS_PIG
647
- sp|P68134|ACTS_MOUSE
648
- sp|P68134|ACTS_MOUSE
649
- sp|P68134|ACTS_MOUSE
650
- sp|P68133|ACTS_HUMAN
651
- sp|P68133|ACTS_HUMAN
652
- sp|P68133|ACTS_HUMAN
653
- sp|P68139|ACTS_CHICK
654
- sp|P68139|ACTS_CHICK
655
- sp|P68139|ACTS_CHICK
656
- sp|P68138|ACTS_BOVIN
657
- sp|P68138|ACTS_BOVIN
658
- sp|P68138|ACTS_BOVIN
659
- sp|P18601|ACT2_ARTSX
660
- sp|P18601|ACT2_ARTSX
661
- sp|P18601|ACT2_ARTSX
662
- sp|P18499|ACTF_STRPU
663
- sp|P18499|ACTF_STRPU
664
- sp|P18499|ACTF_STRPU
665
- sp|P53457|ACT3_DIPDE
666
- sp|P53457|ACT3_DIPDE
667
- sp|P53457|ACT3_DIPDE
668
- sp|P53474|ACTE_STRPU
669
- sp|P53474|ACTE_STRPU
670
- sp|P53474|ACTE_STRPU
671
- sp|Q03342|ACT3_ECHGR
672
- sp|Q03342|ACT3_ECHGR
673
- sp|Q03342|ACT3_ECHGR
674
- sp|P10995|ACT2_XENLA
675
- sp|P10995|ACT2_XENLA
676
- sp|P10995|ACT2_XENLA
677
- sp|Q98972|ACTS_ORYLA
678
- sp|Q98972|ACTS_ORYLA
679
- sp|Q98972|ACTS_ORYLA
680
- sp|P50138|ACT_PUCGR
681
- sp|P50138|ACT_PUCGR
682
- sp|P50138|ACT_PUCGR
683
- sp|P68264|ACTS_OREMO
684
- sp|P68264|ACTS_OREMO
685
- sp|P68264|ACTS_OREMO
686
- sp|P68140|ACTSA_TAKRU
687
- sp|P68140|ACTSA_TAKRU
688
- sp|P68140|ACTSA_TAKRU
689
- sp|Q90X97|ACTS_ATRMM
690
- sp|Q90X97|ACTS_ATRMM
691
- sp|Q90X97|ACTS_ATRMM
692
- sp|P49055|ACTS_CARAU
693
- sp|P49055|ACTS_CARAU
694
- sp|P49055|ACTS_CARAU
695
- sp|P53479|ACTS_CYPCA
696
- sp|P53479|ACTS_CYPCA
697
- sp|P53479|ACTS_CYPCA
698
- sp|Q07903|ACTC_STRPU
699
- sp|Q07903|ACTC_STRPU
700
- sp|Q07903|ACTC_STRPU
701
- sp|P02574|ACT4_DROME
702
- sp|P02574|ACT4_DROME
703
- sp|P02574|ACT4_DROME
704
- sp|P53467|ACTM_MOLOC
705
- sp|P53467|ACTM_MOLOC
706
- sp|P53467|ACTM_MOLOC
707
- sp|P48465|ACT_CRYNH
708
- sp|P48465|ACT_CRYNH
709
- sp|P48465|ACT_CRYNH
710
- sp|Q8BFZ3|ACTBL_MOUSE
711
- sp|Q8BFZ3|ACTBL_MOUSE
712
- sp|Q8BFZ3|ACTBL_MOUSE
713
- sp|P35432|ACT1_ECHGR
714
- sp|P35432|ACT1_ECHGR
715
- sp|P35432|ACT1_ECHGR
716
- sp|P53689|ACT_PHARH
717
- sp|P53689|ACT_PHARH
718
- sp|P53689|ACT_PHARH
719
- sp|Q562R1|ACTBL_HUMAN
720
- sp|Q562R1|ACTBL_HUMAN
721
- sp|Q562R1|ACTBL_HUMAN
722
- sp|Q9Y702|ACT1_SCHCO
723
- sp|Q9Y702|ACT1_SCHCO
724
- sp|Q9Y702|ACT1_SCHCO
725
- sp|Q9Y707|ACT2_SUIBO
726
- sp|Q9Y707|ACT2_SUIBO
727
- sp|Q9Y707|ACT2_SUIBO
728
- sp|P02581|ACT1_SOYBN
729
- sp|P02581|ACT1_SOYBN
730
- sp|P02581|ACT1_SOYBN
731
- sp|P43239|ACT1_PNECA
732
- sp|P43239|ACT1_PNECA
733
- sp|P43239|ACT1_PNECA
734
- sp|P53455|ACT_AJECG
735
- sp|P53455|ACT_AJECG
736
- sp|P53455|ACT_AJECG
737
- sp|P07828|ACT18_DICDI
738
- sp|P07828|ACT18_DICDI
739
- sp|P07828|ACT18_DICDI
740
- sp|Q03341|ACT2_ECHGR
741
- sp|Q03341|ACT2_ECHGR
742
- sp|Q03341|ACT2_ECHGR
743
- sp|Q6S8J3|POTEE_HUMAN
744
- sp|Q6S8J3|POTEE_HUMAN
745
- sp|Q6S8J3|POTEE_HUMAN
746
- sp|O17502|ACTM_BRALA
747
- sp|O17502|ACTM_BRALA
748
- sp|O17502|ACTM_BRALA
749
- sp|P27131|ACT1_NAEFO
750
- sp|P27131|ACT1_NAEFO
751
- sp|P27131|ACT1_NAEFO
752
- sp|P93375|ACT7_TOBAC
753
- sp|P93375|ACT7_TOBAC
754
- sp|P93375|ACT7_TOBAC
755
- sp|O74258|ACT_OGAPD
756
- sp|O74258|ACT_OGAPD
757
- sp|O74258|ACT_OGAPD
758
- sp|P10365|ACT_THELA
759
- sp|P10365|ACT_THELA
760
- sp|P10365|ACT_THELA
761
- sp|Q9Y701|ACT1_SUIBO
762
- sp|Q9Y701|ACT1_SUIBO
763
- sp|Q9Y701|ACT1_SUIBO
764
- sp|A5A3E0|POTEF_HUMAN
765
- sp|A5A3E0|POTEF_HUMAN
766
- sp|A5A3E0|POTEF_HUMAN
767
- sp|A5DQP9|ACT_PICGU
768
- sp|A5DQP9|ACT_PICGU
769
- sp|A5DQP9|ACT_PICGU
770
- sp|Q93132|ACTM_BRAFL
771
- sp|Q93132|ACTM_BRAFL
772
- sp|Q93132|ACTM_BRAFL
773
- sp|P0CG38|POTEI_HUMAN
774
- sp|P0CG38|POTEI_HUMAN
775
- sp|P0CG38|POTEI_HUMAN
776
- sp|Q9BYX7|ACTBM_HUMAN
777
- sp|Q9BYX7|ACTBM_HUMAN
778
- sp|Q9BYX7|ACTBM_HUMAN
779
- sp|Q9UVZ8|ACT_CANDC
780
- sp|Q9UVZ8|ACT_CANDC
781
- sp|Q9UVZ8|ACT_CANDC
782
- sp|P14235|ACT_CANAX
783
- sp|P14235|ACT_CANAX
784
- sp|P14235|ACT_CANAX
785
- sp|Q93130|ACTM_BRABE
786
- sp|Q93130|ACTM_BRABE
787
- sp|Q93130|ACTM_BRABE
788
- sp|P26183|ACT_CRYPV
789
- sp|P26183|ACT_CRYPV
790
- sp|P26183|ACT_CRYPV
791
- sp|P93373|ACT3_TOBAC
792
- sp|P93373|ACT3_TOBAC
793
- sp|P93373|ACT3_TOBAC
794
- sp|P0CG39|POTEJ_HUMAN
795
- sp|P0CG39|POTEJ_HUMAN
796
- sp|P0CG39|POTEJ_HUMAN
797
- sp|Q2U7A3|ACT_ASPOR
798
- sp|Q2U7A3|ACT_ASPOR
799
- sp|Q2U7A3|ACT_ASPOR
800
- sp|Q9UVX4|ACT_COPC7
801
- sp|Q9UVX4|ACT_COPC7
802
- sp|Q9UVX4|ACT_COPC7
803
- sp|P45521|ACT_PROCL
804
- sp|P45521|ACT_PROCL
805
- sp|P45521|ACT_PROCL
806
- sp|P53483|ACTX_TAKRU
807
- sp|P53483|ACTX_TAKRU
808
- sp|P53483|ACTX_TAKRU
809
- sp|P86287|ACT1_PLAFX
810
- sp|P86287|ACT1_PLAFX
811
- sp|P86287|ACT1_PLAFX
812
- sp|Q8I4X0|ACT1_PLAF7
813
- sp|Q8I4X0|ACT1_PLAF7
814
- sp|Q8I4X0|ACT1_PLAF7
815
- sp|Q7RME1|ACT1_PLAYO
816
- sp|Q7RME1|ACT1_PLAYO
817
- sp|Q7RME1|ACT1_PLAYO
818
- sp|P10988|ACT1_PLAFO
819
- sp|P10988|ACT1_PLAFO
820
- sp|P10988|ACT1_PLAFO
821
- sp|Q4Z1L3|ACT1_PLABA
822
- sp|Q4Z1L3|ACT1_PLABA
823
- sp|Q4Z1L3|ACT1_PLABA
824
- sp|P30169|ACT7_SOLTU
825
- sp|P30169|ACT7_SOLTU
826
- sp|P30169|ACT7_SOLTU
827
- sp|Q9NJV4|ACT1_NAEGR
828
- sp|Q9NJV4|ACT1_NAEGR
829
- sp|Q9NJV4|ACT1_NAEGR
830
- sp|P23344|ACT2_DAUCA
831
- sp|P23344|ACT2_DAUCA
832
- sp|P23344|ACT2_DAUCA
833
- sp|P10993|ACT2_TETPY
834
- sp|P10993|ACT2_TETPY
835
- sp|P10993|ACT2_TETPY
836
- sp|P53491|ACT_ACEPE
837
- sp|P53491|ACT_ACEPE
838
- sp|P53491|ACT_ACEPE
839
- sp|P10992|ACT1_TETTH
840
- sp|P10992|ACT1_TETTH
841
- sp|P10992|ACT1_TETTH
842
- sp|Q9Y896|ACT2_SCHCO
843
- sp|Q9Y896|ACT2_SCHCO
844
- sp|Q9Y896|ACT2_SCHCO
845
- sp|Q554S6|ACT17_DICDI
846
- sp|Q554S6|ACT17_DICDI
847
- sp|Q554S6|ACT17_DICDI
848
- sp|Q54HF1|ACT24_DICDI
849
- sp|Q54HF1|ACT24_DICDI
850
- sp|Q54HF1|ACT24_DICDI
851
- sp|P27132|ACT2_NAEFO
852
- sp|P27132|ACT2_NAEFO
853
- sp|P27132|ACT2_NAEFO
854
- sp|P53499|ACT_CHOCR
855
- sp|P53499|ACT_CHOCR
856
- sp|P53499|ACT_CHOCR
857
- sp|Q54HF0|ACT25_DICDI
858
- sp|Q54HF0|ACT25_DICDI
859
- sp|Q54HF0|ACT25_DICDI
860
- sp|Q4YU79|ACT2_PLABA
861
- sp|Q4YU79|ACT2_PLABA
862
- sp|Q4YU79|ACT2_PLABA
863
- sp|P24263|ACTD_PHYPO
864
- sp|P24263|ACTD_PHYPO
865
- sp|P24263|ACTD_PHYPO
866
- sp|P12433|ACT2_TRYBB
867
- sp|P12433|ACT2_TRYBB
868
- sp|P12433|ACT2_TRYBB
869
- sp|P12432|ACT1_TRYBB
870
- sp|P12432|ACT1_TRYBB
871
- sp|P12432|ACT1_TRYBB
872
- sp|P53477|ACT_TRYCR
873
- sp|P53477|ACT_TRYCR
874
- sp|P53477|ACT_TRYCR
875
- sp|P93738|ACT9_ARATH
876
- sp|P93738|ACT9_ARATH
877
- sp|P93738|ACT9_ARATH
878
- sp|P45520|ACT_LEIMA
879
- sp|P45520|ACT_LEIMA
880
- sp|P45520|ACT_LEIMA
881
- sp|Q10AZ4|ACT3_ORYSJ
882
- sp|Q10AZ4|ACT3_ORYSJ
883
- sp|Q10AZ4|ACT3_ORYSJ
884
- sp|A2XNS1|ACT3_ORYSI
885
- sp|A2XNS1|ACT3_ORYSI
886
- sp|A2XNS1|ACT3_ORYSI
887
- sp|P30171|ACT11_SOLTU
888
- sp|P30171|ACT11_SOLTU
889
- sp|P30171|ACT11_SOLTU
890
- sp|P81228|ACT5_SOLTU
891
- sp|P81228|ACT5_SOLTU
892
- sp|P81228|ACT5_SOLTU
893
- sp|P53504|ACT1_SORBI
894
- sp|P53504|ACT1_SORBI
895
- sp|P53504|ACT1_SORBI
896
- sp|P93371|ACT5_TOBAC
897
- sp|P93371|ACT5_TOBAC
898
- sp|P93371|ACT5_TOBAC
899
- sp|O81221|ACT_GOSHI
900
- sp|O81221|ACT_GOSHI
901
- sp|O81221|ACT_GOSHI
902
- sp|P93372|ACT4_TOBAC
903
- sp|P93372|ACT4_TOBAC
904
- sp|P93372|ACT4_TOBAC
905
- sp|P30164|ACT1_PEA
906
- sp|P30164|ACT1_PEA
907
- sp|P30164|ACT1_PEA
908
- sp|P81229|ACT8_SOLTU
909
- sp|P81229|ACT8_SOLTU
910
- sp|P81229|ACT8_SOLTU
911
- sp|P30172|ACT12_SOLTU
912
- sp|P30172|ACT12_SOLTU
913
- sp|P30172|ACT12_SOLTU
914
- sp|P30173|ACT13_SOLTU
915
- sp|P30173|ACT13_SOLTU
916
- sp|P30173|ACT13_SOLTU
917
- sp|P30167|ACT3_SOLTU
918
- sp|P30167|ACT3_SOLTU
919
- sp|P30167|ACT3_SOLTU
920
- sp|P93376|ACT6_TOBAC
921
- sp|P93376|ACT6_TOBAC
922
- sp|P93376|ACT6_TOBAC
923
- sp|Q96484|ACT3_SOLLC
924
- sp|Q96484|ACT3_SOLLC
925
- sp|Q96484|ACT3_SOLLC
926
- sp|Q96483|ACT2_SOLLC
927
- sp|Q96483|ACT2_SOLLC
928
- sp|Q96483|ACT2_SOLLC
929
- sp|Q96482|ACT1_SOLLC
930
- sp|Q96482|ACT1_SOLLC
931
- sp|Q96482|ACT1_SOLLC
932
- sp|P30165|ACT2_PEA
933
- sp|P30165|ACT2_PEA
934
- sp|P30165|ACT2_PEA
935
- sp|P93584|ACT9_SOLTU
936
- sp|P93584|ACT9_SOLTU
937
- sp|P93584|ACT9_SOLTU
938
- sp|Q10DV7|ACT1_ORYSJ
939
- sp|Q10DV7|ACT1_ORYSJ
940
- sp|Q10DV7|ACT1_ORYSJ
941
- sp|A2XLF2|ACT1_ORYSI
942
- sp|A2XLF2|ACT1_ORYSI
943
- sp|A2XLF2|ACT1_ORYSI
944
- sp|P53496|ACT11_ARATH
945
- sp|P53496|ACT11_ARATH
946
- sp|P53496|ACT11_ARATH
947
- sp|P0CJ47|ACT3_ARATH
948
- sp|P0CJ47|ACT3_ARATH
949
- sp|P0CJ47|ACT3_ARATH
950
- sp|P0CJ46|ACT1_ARATH
951
- sp|P0CJ46|ACT1_ARATH
952
- sp|P0CJ46|ACT1_ARATH
953
- sp|P02582|ACT1_MAIZE
954
- sp|P02582|ACT1_MAIZE
955
- sp|P02582|ACT1_MAIZE
956
- sp|P02576|ACTA_PHYPO
957
- sp|P02576|ACTA_PHYPO
958
- sp|P02576|ACTA_PHYPO
959
- sp|Q96292|ACT2_ARATH
960
- sp|Q96292|ACT2_ARATH
961
- sp|Q96292|ACT2_ARATH
962
- sp|Q96293|ACT8_ARATH
963
- sp|Q96293|ACT8_ARATH
964
- sp|Q96293|ACT8_ARATH
965
- sp|Q54GX7|ACT10_DICDI
966
- sp|Q54GX7|ACT10_DICDI
967
- sp|Q54GX7|ACT10_DICDI