genevalidator 1.6.1 → 1.6.2

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Files changed (131) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +3 -1
  3. data/.travis.yml +2 -0
  4. data/README.md +78 -30
  5. data/Rakefile +11 -8
  6. data/aux/app_template_footer.erb +1 -6
  7. data/aux/app_template_header.erb +12 -32
  8. data/aux/files/css/style.css +2 -8
  9. data/aux/files/js/plots.js +564 -576
  10. data/aux/files/js/script.js +10 -0
  11. data/aux/json_footer.erb +8 -0
  12. data/aux/json_header.erb +19 -0
  13. data/aux/json_query.erb +14 -0
  14. data/aux/template_footer.erb +9 -58
  15. data/aux/template_header.erb +18 -58
  16. data/aux/template_query.erb +8 -36
  17. data/bin/genevalidator +45 -32
  18. data/genevalidator.gemspec +11 -7
  19. data/lib/genevalidator.rb +75 -455
  20. data/lib/genevalidator/arg_validation.rb +78 -107
  21. data/lib/genevalidator/blast.rb +57 -60
  22. data/lib/genevalidator/clusterization.rb +15 -15
  23. data/lib/genevalidator/exceptions.rb +32 -5
  24. data/lib/genevalidator/get_raw_sequences.rb +70 -33
  25. data/lib/genevalidator/hsp.rb +1 -4
  26. data/lib/genevalidator/json_to_gv_results.rb +109 -0
  27. data/lib/genevalidator/output.rb +177 -185
  28. data/lib/genevalidator/pool.rb +2 -1
  29. data/lib/genevalidator/sequences.rb +3 -3
  30. data/lib/genevalidator/tabular_parser.rb +24 -18
  31. data/lib/genevalidator/validation.rb +279 -0
  32. data/lib/genevalidator/validation_alignment.rb +31 -47
  33. data/lib/genevalidator/validation_blast_reading_frame.rb +19 -18
  34. data/lib/genevalidator/validation_duplication.rb +23 -19
  35. data/lib/genevalidator/validation_gene_merge.rb +30 -65
  36. data/lib/genevalidator/validation_length_cluster.rb +14 -53
  37. data/lib/genevalidator/validation_length_rank.rb +10 -11
  38. data/lib/genevalidator/validation_open_reading_frame.rb +18 -19
  39. data/lib/genevalidator/validation_report.rb +2 -5
  40. data/lib/genevalidator/validation_test.rb +8 -4
  41. data/lib/genevalidator/version.rb +1 -1
  42. data/test/test_all_validations.rb +51 -66
  43. data/test/test_blast.rb +68 -51
  44. data/test/test_clusterization.rb +1 -1
  45. data/test/test_clusterization_2d.rb +19 -13
  46. data/test/test_extended_array_methods.rb +1 -1
  47. data/test/test_files/all_validations_mrna/mrna.blast_tab6 +1806 -0
  48. data/test/test_files/all_validations_mrna/mrna.blast_tab7 +1865 -0
  49. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml → mrna.blast_xml} +18642 -1
  50. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.index → mrna.blast_xml.index} +300 -0
  51. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta → mrna.fa} +0 -0
  52. data/test/test_files/all_validations_mrna/mrna.raw_seq +3970 -0
  53. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} +901 -1
  54. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_tab → prot.blast_tab6} +416 -0
  55. data/test/test_files/all_validations_prot/prot.blast_tab7 +2400 -0
  56. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml → prot.blast_xml} +18299 -6723
  57. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.index → prot.blast_xml.index} +408 -0
  58. data/test/test_files/all_validations_prot/{all_validations_prot.fasta → prot.fa} +0 -0
  59. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq → prot.raw_seq} +2735 -0
  60. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq.idx → prot.raw_seq.idx} +3032 -1808
  61. data/test/test_sequences.rb +46 -41
  62. data/test/test_validation_open_reading_frame.rb +318 -202
  63. data/test/test_validations.rb +48 -32
  64. metadata +76 -102
  65. data/doc/AliasDuplicationError.html +0 -134
  66. data/doc/AlignmentValidation.html +0 -1687
  67. data/doc/AlignmentValidationOutput.html +0 -659
  68. data/doc/Blast.html +0 -1905
  69. data/doc/BlastRFValidationOutput.html +0 -545
  70. data/doc/BlastReadingFrameValidation.html +0 -370
  71. data/doc/BlastUtils.html +0 -875
  72. data/doc/ClasspathError.html +0 -134
  73. data/doc/Cluster.html +0 -1316
  74. data/doc/DuplciationValidationOutput.html +0 -564
  75. data/doc/DuplicationValidation.html +0 -920
  76. data/doc/DuplicationValidationOutput.html +0 -564
  77. data/doc/FileNotFoundException.html +0 -134
  78. data/doc/GeneMergeValidation.html +0 -935
  79. data/doc/GeneMergeValidationOutput.html +0 -652
  80. data/doc/HierarchicalClusterization.html +0 -994
  81. data/doc/Hsp.html +0 -1485
  82. data/doc/InconsistentTabularFormat.html +0 -135
  83. data/doc/LengthClusterValidation.html +0 -982
  84. data/doc/LengthClusterValidationOutput.html +0 -515
  85. data/doc/LengthRankValidation.html +0 -496
  86. data/doc/LengthRankValidationOutput.html +0 -517
  87. data/doc/NoInternetError.html +0 -135
  88. data/doc/NoMafftInstallationError.html +0 -134
  89. data/doc/NoPIdentError.html +0 -134
  90. data/doc/NoValidationError.html +0 -134
  91. data/doc/NotEnoughHitsError.html +0 -135
  92. data/doc/ORFValidationOutput.html +0 -593
  93. data/doc/OpenReadingFrameValidation.html +0 -1107
  94. data/doc/OtherError.html +0 -123
  95. data/doc/Output.html +0 -1540
  96. data/doc/Pair.html +0 -309
  97. data/doc/PairCluster.html +0 -767
  98. data/doc/Plot.html +0 -837
  99. data/doc/QueryError.html +0 -134
  100. data/doc/ReportClassError.html +0 -135
  101. data/doc/Sequence.html +0 -1299
  102. data/doc/SequenceTypeError.html +0 -135
  103. data/doc/TabularEntry.html +0 -837
  104. data/doc/TabularParser.html +0 -1104
  105. data/doc/Validation.html +0 -2147
  106. data/doc/ValidationClassError.html +0 -134
  107. data/doc/ValidationOutput.html +0 -460
  108. data/doc/ValidationReport.html +0 -940
  109. data/doc/ValidationTest.html +0 -939
  110. data/doc/_index.html +0 -449
  111. data/doc/class_list.html +0 -54
  112. data/doc/css/common.css +0 -1
  113. data/doc/css/full_list.css +0 -57
  114. data/doc/css/style.css +0 -338
  115. data/doc/file.README.html +0 -151
  116. data/doc/file_list.html +0 -56
  117. data/doc/frames.html +0 -26
  118. data/doc/index.html +0 -151
  119. data/doc/js/app.js +0 -214
  120. data/doc/js/full_list.js +0 -178
  121. data/doc/js/jquery.js +0 -4
  122. data/doc/method_list.html +0 -1505
  123. data/doc/top-level-namespace.html +0 -112
  124. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab +0 -967
  125. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index +0 -967
  126. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq +0 -4929
  127. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx +0 -1006
  128. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq +0 -2075
  129. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index +0 -1864
  130. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq +0 -42411
  131. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx +0 -3751
data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} RENAMED
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1369
+ - 173674
1370
+ sp|P53500|ACT_CYAME:
1371
+ - 173674
1372
+ - 174077
1373
+ sp|P78711|ACT_NEUCR:
1374
+ - 174077
1375
+ - 174478
1376
+ sp|Q6TCF2|ACT_GAEGA:
1377
+ - 174478
1378
+ - 174879
1379
+ sp|Q9UVW9|ACTG_ACRCH:
1380
+ - 174879
1381
+ - 175281
1382
+ sp|P20359|ACTG_EMENI:
1383
+ - 175281
1384
+ - 175683
1385
+ sp|Q9URS0|ACTG_PENCH:
1386
+ - 175683
1387
+ - 176085
1388
+ sp|P53476|ACT_TOXGO:
1389
+ - 176085
1390
+ - 176487
1391
+ sp|P24902|ACT_PINCO:
1392
+ - 176487
1393
+ - 176672
1394
+ sp|Q8X119|ACT_EXODE:
1395
+ - 176672
1396
+ - 177073
1397
+ sp|P17128|ACT_KLULA:
1398
+ - 177073
1399
+ - 177474
1400
+ sp|P13363|ACT_PHYME:
1401
+ - 177474
1402
+ - 177875
1403
+ sp|P22132|ACT2_PHYIN:
1404
+ - 177875
1405
+ - 178277
1406
+ sp|P51775|ACT_GIAIN:
1407
+ - 178277
1408
+ - 178678
1409
+ sp|Q9P4D1|ACT_PICPG:
1410
+ - 178678
1411
+ - 179080
1412
+ sp|Q54I79|ACTY_DICDI:
1413
+ - 179080
1414
+ - 179490
1415
+ sp|P38673|ACTZ_NEUCR:
1416
+ - 179490
1417
+ - 179897
1418
+ sp|Q99023|ACT_HYPJE:
1419
+ - 179897
1420
+ - 180299
1421
+ sp|Q54L54|ACT29_DICDI:
1422
+ - 180299
1423
+ - 180714
1424
+ sp|P42023|ACTZ_PNECA:
1425
+ - 180714
1426
+ - 181126
1427
+ sp|P86288|ACT2_PLAFX:
1428
+ - 181126
1429
+ - 181529
1430
+ sp|Q8ILW9|ACT2_PLAF7:
1431
+ - 181529
1432
+ - 181932
1433
+ sp|Q7RPB4|ACT2_PLAYO:
1434
+ - 181932
1435
+ - 182335
1436
+ sp|P14883|ACT2_PLAFO:
1437
+ - 182335
1438
+ - 182738
1439
+ sp|Q9BYD9|ACTT3_HUMAN:
1440
+ - 182738
1441
+ - 183138
1442
+ sp|Q8SWN8|ACT_ENCCU:
1443
+ - 183138
1444
+ - 183539
1445
+ sp|P85515|ACTZ_RAT:
1446
+ - 183539
1447
+ - 183940
1448
+ sp|P61164|ACTZ_MOUSE:
1449
+ - 183940
1450
+ - 184343
1451
+ sp|Q4R6J9|ACTZ_MACFA:
1452
+ - 184343
1453
+ - 184746
1454
+ sp|P61163|ACTZ_HUMAN:
1455
+ - 184746
1456
+ - 185149
1457
+ sp|P61162|ACTZ_CANFA:
1458
+ - 185149
1459
+ - 185552
1460
+ sp|P42025|ACTY_HUMAN:
1461
+ - 185552
1462
+ - 185955
1463
+ sp|A4IFE3|ACTY_BOVIN:
1464
+ - 185955
1465
+ - 186358
1466
+ sp|Q8R5C5|ACTY_MOUSE:
1467
+ - 186358
1468
+ - 186761
1469
+ sp|Q54HE9|ACT27_DICDI:
1470
+ - 186761
1471
+ - 187161
1472
+ sp|P45889|ACTZ_DROME:
1473
+ - 187161
1474
+ - 187564
1475
+ sp|Q8BXF8|ACTT3_MOUSE:
1476
+ - 187564
1477
+ - 187961
1478
+ sp|Q54HE7|ACT28_DICDI:
1479
+ - 187961
1480
+ - 188342
1481
+ sp|Q9D9L5|ACTT2_MOUSE:
1482
+ - 188342
1483
+ - 188747
1484
+ sp|Q2TA43|ACTT2_BOVIN:
1485
+ - 188747
1486
+ - 189152
1487
+ sp|Q8TDG2|ACTT1_HUMAN:
1488
+ - 189152
1489
+ - 189556
1490
+ sp|Q4R821|ACTT1_MACFA:
1491
+ - 189556
1492
+ - 189959
1493
+ sp|Q4R317|ACTT2_MACFA:
1494
+ - 189959
1495
+ - 190364
1496
+ sp|Q8TDY3|ACTT2_HUMAN:
1497
+ - 190364
1498
+ - 190769
1499
+ sp|P32381|ARP2_YEAST:
1500
+ - 190769
1501
+ - 191187
1502
+ sp|P53489|ARP2_CAEEL:
1503
+ - 191187
1504
+ - 191609
1505
+ sp|P53487|ARP2_ACACA:
1506
+ - 191609
1507
+ - 192024
1508
+ sp|Q9D9J3|ACTT1_MOUSE:
1509
+ - 192024
1510
+ - 192428
1511
+ sp|O96621|ARP2_DICDI:
1512
+ - 192428
1513
+ - 192847
1514
+ sp|Q7ZTP2|ARP2A_XENLA:
1515
+ - 192847
1516
+ - 193269
1517
+ sp|P61161|ARP2_MOUSE:
1518
+ - 193269
1519
+ - 193690
1520
+ sp|P61160|ARP2_HUMAN:
1521
+ - 193690
1522
+ - 194111
1523
+ sp|A7MB62|ARP2_BOVIN:
1524
+ - 194111
1525
+ - 194532
1526
+ sp|Q5M7U6|ARP2_RAT:
1527
+ - 194532
1528
+ - 194951
1529
+ sp|P53488|ARP2_CHICK:
1530
+ - 194951
1531
+ - 195372
1532
+ sp|Q5BL41|ARP2_XENTR:
1533
+ - 195372
1534
+ - 195793
1535
+ sp|Q5XIK1|ACTT1_RAT:
1536
+ - 195793
1537
+ - 196195
1538
+ sp|Q7ZXV3|ARP2B_XENLA:
1539
+ - 196195
1540
+ - 196617
1541
+ sp|P10994|ACTS_PLEWA:
1542
+ - 196617
1543
+ - 196766
1544
+ sp|P45888|ARP2_DROME:
1545
+ - 196766
1546
+ - 197192
1547
+ sp|Q7SXW6|ARP2A_DANRE:
1548
+ - 197192
1549
+ - 197614
1550
+ sp|Q5R4K0|ARP2_PONAB:
1551
+ - 197614
1552
+ - 198035
1553
+ sp|Q56A35|ARP2B_DANRE:
1554
+ - 198035
1555
+ - 198457
1556
+ sp|Q61JZ2|ARP2_CAEBR:
1557
+ - 198457
1558
+ - 198877
1559
+ sp|O94630|ARP1_SCHPO:
1560
+ - 198877
1561
+ - 199283
1562
+ sp|Q4QR76|ACL7B_RAT:
1563
+ - 199283
1564
+ - 199727
1565
+ sp|Q641W9|ACL7A_RAT:
1566
+ - 199727
1567
+ - 200194
1568
+ sp|Q9QY83|ACL7B_MOUSE:
1569
+ - 200194
1570
+ - 200641
1571
+ sp|Q9Y614|ACL7B_HUMAN:
1572
+ - 200641
1573
+ - 201085
1574
+ sp|Q9UUJ1|ARP2_SCHPO:
1575
+ - 201085
1576
+ - 201502
1577
+ sp|Q32KZ2|ACL7A_BOVIN:
1578
+ - 201502
1579
+ - 201969
1580
+ sp|Q9QY84|ACL7A_MOUSE:
1581
+ - 201969
1582
+ - 202438
1583
+ sp|Q95JK8|ACL7B_MACFA:
1584
+ - 202438
1585
+ - 202882
1586
+ sp|P38696|ARP1_YEAST:
1587
+ - 202882
1588
+ - 203293
1589
+ sp|Q32L91|ACL7B_BOVIN:
1590
+ - 203293
1591
+ - 203739
1592
+ sp|Q4R6Q3|ACL7A_MACFA:
1593
+ - 203739
1594
+ - 204203
1595
+ sp|Q9Y615|ACL7A_HUMAN:
1596
+ - 204203
1597
+ - 204667
1598
+ sp|P30170|ACT10_SOLTU:
1599
+ - 204667
1600
+ - 204888
1601
+ sp|Q2T9W4|ACTL9_BOVIN:
1602
+ - 204888
1603
+ - 205333
1604
+ sp|A2YUL5|ARP2_ORYSI:
1605
+ - 205333
1606
+ - 205749
1607
+ sp|Q6Z256|ARP2_ORYSJ:
1608
+ - 205749
1609
+ - 206165
1610
+ sp|Q9LSD6|ARP2_ARATH:
1611
+ - 206165
1612
+ - 206581
1613
+ sp|Q8CG27|ACTL9_MOUSE:
1614
+ - 206581
1615
+ - 207025
1616
+ sp|Q25379|ACT3_LYTPI:
1617
+ - 207025
1618
+ - 207222
1619
+ sp|Q25381|ACTM_LYTPI:
1620
+ - 207222
1621
+ - 207419
1622
+ sp|Q25380|ACT4_LYTPI:
1623
+ - 207419
1624
+ - 207597
1625
+ sp|D0LWX4|BARP_HALO1:
1626
+ - 207597
1627
+ - 208001
1628
+ sp|P86700|ACT_CHIOP:
1629
+ - 208001
1630
+ - 208217
1631
+ sp|Q61WW9|ARP3_CAEBR:
1632
+ - 208217
1633
+ - 208671
1634
+ sp|Q9N4I0|ARP3_CAEEL:
1635
+ - 208671
1636
+ - 209124
1637
+ sp|Q8L4Y5|ARP7_ARATH:
1638
+ - 209124
1639
+ - 209514
1640
+ sp|Q8TC94|ACTL9_HUMAN:
1641
+ - 209514
1642
+ - 209959
1643
+ sp|A3ANB5|ARP7_ORYSJ:
1644
+ - 209959
1645
+ - 210346
1646
+ sp|A2XMK6|ARP7_ORYSI:
1647
+ - 210346
1648
+ - 210733
1649
+ sp|Q6AY16|ACTL9_RAT:
1650
+ - 210733
1651
+ - 211171
1652
+ sp|Q84M92|ARP4_ARATH:
1653
+ - 211171
1654
+ - 211640
1655
+ sp|P32392|ARP3_DROME:
1656
+ - 211640
1657
+ - 212086
1658
+ sp|O94805|ACL6B_HUMAN:
1659
+ - 212086
1660
+ - 212541
1661
+ sp|P86173|ACL6B_RAT:
1662
+ - 212541
1663
+ - 212994
1664
+ sp|Q99MR0|ACL6B_MOUSE:
1665
+ - 212994
1666
+ - 213449
1667
+ sp|A4FUX8|ACL6B_BOVIN:
1668
+ - 213449
1669
+ - 213904
1670
+ sp|P53490|ARP3_ACACA:
1671
+ - 213904
1672
+ - 214359
1673
+ sp|P42528|ARP3_DICDI:
1674
+ - 214359
1675
+ - 214805
1676
+ sp|O73723|ARP3_TAKRU:
1677
+ - 214805
1678
+ - 215251
1679
+ sp|Q90WD0|ARP3_CHICK:
1680
+ - 215251
1681
+ - 215697
1682
+ sp|Q11212|ACT_SPOLI:
1683
+ - 215697
1684
+ - 215885
1685
+ sp|Q4V7C7|ARP3_RAT:
1686
+ - 215885
1687
+ - 216329
1688
+ sp|Q99JY9|ARP3_MOUSE:
1689
+ - 216329
1690
+ - 216775
1691
+ sp|Q5R8R1|ARP3_PONAB:
1692
+ - 216775
1693
+ - 217221
1694
+ sp|P61158|ARP3_HUMAN:
1695
+ - 217221
1696
+ - 217667
1697
+ sp|P61157|ARP3_BOVIN:
1698
+ - 217667
1699
+ - 218113
1700
+ sp|P47117|ARP3_YEAST:
1701
+ - 218113
1702
+ - 218590
1703
+ sp|Q6ZJW9|ARP4_ORYSJ:
1704
+ - 218590
1705
+ - 219061
1706
+ sp|A2YR10|ARP4_ORYSI:
1707
+ - 219061
1708
+ - 219532
1709
+ sp|A2AKE7|ACL10_MOUSE:
1710
+ - 219532
1711
+ - 219906
1712
+ sp|Q7XR80|ARP8_ORYSJ:
1713
+ - 219906
1714
+ - 220419
1715
+ sp|A8WAT2|ARP8_ORYSI:
1716
+ - 220419
1717
+ - 220932
1718
+ sp|Q39596|ACT_OXYRB:
1719
+ - 220932
1720
+ - 221040
1721
+ sp|P78712|ARP3_NEUCR:
1722
+ - 221040
1723
+ - 221507
1724
+ sp|Q4P2E8|ARP4_USTMA:
1725
+ - 221507
1726
+ - 222070
1727
+ sp|Q5JWF8|ACL10_HUMAN:
1728
+ - 222070
1729
+ - 222342
1730
+ sp|Q09849|ARP42_SCHPO:
1731
+ - 222342
1732
+ - 222795
1733
+ sp|P32390|ARP3_SCHPO:
1734
+ - 222795
1735
+ - 223250
1736
+ sp|Q5AW89|ARP4_EMENI:
1737
+ - 223250
1738
+ - 223750
1739
+ sp|Q9FKT0|ARP8_ARATH:
1740
+ - 223750
1741
+ - 224249
1742
+ sp|P45890|ARP6_DROME:
1743
+ - 224249
1744
+ - 224674
1745
+ sp|Q4WHA3|ARP4_ASPFU:
1746
+ - 224674
1747
+ - 225168
1748
+ sp|Q4IPI4|ARP4_GIBZE:
1749
+ - 225168
1750
+ - 225667
1751
+ sp|Q9DEE9|ARP6_CHICK:
1752
+ - 225667
1753
+ - 226090
1754
+ sp|Q9H568|ACTL8_HUMAN:
1755
+ - 226090
1756
+ - 226484
1757
+ sp|Q6C061|ARP4_YARLI:
1758
+ - 226484
1759
+ - 226944
1760
+ sp|Q9GZN1|ARP6_HUMAN:
1761
+ - 226944
1762
+ - 227367
1763
+ sp|O94241|ARP6_SCHPO:
1764
+ - 227367
1765
+ - 227796
1766
+ sp|Q9D864|ARP6_MOUSE:
1767
+ - 227796
1768
+ - 228219
1769
+ sp|Q6C982|ARP6_YARLI:
1770
+ - 228219
1771
+ - 228633
1772
+ sp|Q8LGE3|ARP6_ARATH:
1773
+ - 228633
1774
+ - 229082
1775
+ sp|O96019|ACL6A_HUMAN:
1776
+ - 229082
1777
+ - 229540
1778
+ sp|Q9Z2N8|ACL6A_MOUSE:
1779
+ - 229540
1780
+ - 229998
1781
+ sp|Q4R333|ACL6A_MACFA:
1782
+ - 229998
1783
+ - 230456
1784
+ sp|Q5NBI2|ARP6_ORYSJ:
1785
+ - 230456
1786
+ - 230913
1787
+ sp|A2WNB0|ARP6_ORYSI:
1788
+ - 230913
1789
+ - 231370
1790
+ sp|Q6FJV8|ARP4_CANGA:
1791
+ - 231370
1792
+ - 231892
1793
+ sp|Q54KZ7|ARP6_DICDI:
1794
+ - 231892
1795
+ - 232411
1796
+ sp|Q7SHR0|ARP4_NEUCR:
1797
+ - 232411
1798
+ - 232908
1799
+ sp|P80428|ARP4_YEAST:
1800
+ - 232908
1801
+ - 233426
1802
+ sp|Q9P1U1|ARP3B_HUMAN:
1803
+ - 233426
1804
+ - 233873
1805
+ sp|Q9C0K3|ARP3C_HUMAN:
1806
+ - 233873
1807
+ - 234109
1808
+ sp|Q09443|ARP6_CAEEL:
1809
+ - 234109
1810
+ - 234555
1811
+ sp|Q641P0|ARP3B_MOUSE:
1812
+ - 234555
1813
+ - 235002
1814
+ sp|Q6CSB9|ARP4_KLULA:
1815
+ - 235002
1816
+ - 235551
1817
+ sp|Q9SAF1|ARP3_ARATH:
1818
+ - 235551
1819
+ - 236006
1820
+ sp|Q754G5|ARP4_ASHGO:
1821
+ - 236006
1822
+ - 236513
1823
+ sp|Q6K908|ARP3_ORYSJ:
1824
+ - 236513
1825
+ - 236969
1826
+ sp|A2X6S3|ARP3_ORYSI:
1827
+ - 236969
1828
+ - 237425
1829
+ sp|Q9H9F9|ARP5_HUMAN:
1830
+ - 237425
1831
+ - 238062
1832
+ sp|Q4W9M3|ARP6_ASPFU:
1833
+ - 238062
1834
+ - 238558
1835
+ sp|Q5AXH1|ARP6_EMENI:
1836
+ - 238558
1837
+ - 239065
1838
+ sp|Q5ZJA4|ARP5_CHICK:
1839
+ - 239065
1840
+ - 239706
1841
+ sp|Q7S6X6|ARP6_NEUCR:
1842
+ - 239706
1843
+ - 240180
1844
+ sp|Q24733|ACT_DICVI:
1845
+ - 240180
1846
+ - 240235
1847
+ sp|Q6BXN0|ARP4_DEBHA:
1848
+ - 240235
1849
+ - 240756
1850
+ sp|Q940Z2|ARP5_ARATH:
1851
+ - 240756
1852
+ - 241512
1853
+ sp|Q80US4|ARP5_MOUSE:
1854
+ - 241512
1855
+ - 242147
1856
+ sp|P85937|ACT2_PSEMZ:
1857
+ - 242147
1858
+ - 242202
1859
+ sp|Q5AC48|ARP4_CANAL:
1860
+ - 242202
1861
+ - 242699
1862
+ sp|Q9P7X7|ARP4_SCHPO:
1863
+ - 242699
1864
+ - 243160
1865
+ sp|Q12509|ARP6_YEAST:
1866
+ - 243160
1867
+ - 243626
1868
+ sp|Q17GZ9|ARP5_AEDAE:
1869
+ - 243626
1870
+ - 244312
1871
+ sp|Q6CJF4|ARP6_KLULA:
1872
+ - 244312
1873
+ - 244755
1874
+ sp|A2ZP58|ARP5_ORYSJ:
1875
+ - 244755
1876
+ - 245360
1877
+ sp|A2WKK5|ARP5_ORYSI:
1878
+ - 245360
1879
+ - 245965
1880
+ sp|P53946|ARP5_YEAST:
1881
+ - 245965
1882
+ - 246752
1883
+ sp|Q9Y7X8|ARP5_SCHPO:
1884
+ - 246752
1885
+ - 247505
1886
+ sp|Q3ZBD2|ARP10_BOVIN:
1887
+ - 247505
1888
+ - 247951
1889
+ sp|Q9VEC3|ARP5_DROME:
1890
+ - 247951
1891
+ - 248630
1892
+ sp|Q293V2|ARP5_DROPS:
1893
+ - 248630
1894
+ - 249312
1895
+ sp|Q9QZB7|ARP10_MOUSE:
1896
+ - 249312
1897
+ - 249758
1898
+ sp|P0CM04|ARP6_CRYNJ:
1899
+ - 249758
1900
+ - 250277
1901
+ sp|P0CM05|ARP6_CRYNB:
1902
+ - 250277
1903
+ - 250796
1904
+ sp|Q6FKE7|ARP6_CANGA:
1905
+ - 250796
1906
+ - 251244