genevalidator 1.6.1 → 1.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (131) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +3 -1
  3. data/.travis.yml +2 -0
  4. data/README.md +78 -30
  5. data/Rakefile +11 -8
  6. data/aux/app_template_footer.erb +1 -6
  7. data/aux/app_template_header.erb +12 -32
  8. data/aux/files/css/style.css +2 -8
  9. data/aux/files/js/plots.js +564 -576
  10. data/aux/files/js/script.js +10 -0
  11. data/aux/json_footer.erb +8 -0
  12. data/aux/json_header.erb +19 -0
  13. data/aux/json_query.erb +14 -0
  14. data/aux/template_footer.erb +9 -58
  15. data/aux/template_header.erb +18 -58
  16. data/aux/template_query.erb +8 -36
  17. data/bin/genevalidator +45 -32
  18. data/genevalidator.gemspec +11 -7
  19. data/lib/genevalidator.rb +75 -455
  20. data/lib/genevalidator/arg_validation.rb +78 -107
  21. data/lib/genevalidator/blast.rb +57 -60
  22. data/lib/genevalidator/clusterization.rb +15 -15
  23. data/lib/genevalidator/exceptions.rb +32 -5
  24. data/lib/genevalidator/get_raw_sequences.rb +70 -33
  25. data/lib/genevalidator/hsp.rb +1 -4
  26. data/lib/genevalidator/json_to_gv_results.rb +109 -0
  27. data/lib/genevalidator/output.rb +177 -185
  28. data/lib/genevalidator/pool.rb +2 -1
  29. data/lib/genevalidator/sequences.rb +3 -3
  30. data/lib/genevalidator/tabular_parser.rb +24 -18
  31. data/lib/genevalidator/validation.rb +279 -0
  32. data/lib/genevalidator/validation_alignment.rb +31 -47
  33. data/lib/genevalidator/validation_blast_reading_frame.rb +19 -18
  34. data/lib/genevalidator/validation_duplication.rb +23 -19
  35. data/lib/genevalidator/validation_gene_merge.rb +30 -65
  36. data/lib/genevalidator/validation_length_cluster.rb +14 -53
  37. data/lib/genevalidator/validation_length_rank.rb +10 -11
  38. data/lib/genevalidator/validation_open_reading_frame.rb +18 -19
  39. data/lib/genevalidator/validation_report.rb +2 -5
  40. data/lib/genevalidator/validation_test.rb +8 -4
  41. data/lib/genevalidator/version.rb +1 -1
  42. data/test/test_all_validations.rb +51 -66
  43. data/test/test_blast.rb +68 -51
  44. data/test/test_clusterization.rb +1 -1
  45. data/test/test_clusterization_2d.rb +19 -13
  46. data/test/test_extended_array_methods.rb +1 -1
  47. data/test/test_files/all_validations_mrna/mrna.blast_tab6 +1806 -0
  48. data/test/test_files/all_validations_mrna/mrna.blast_tab7 +1865 -0
  49. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml → mrna.blast_xml} +18642 -1
  50. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.index → mrna.blast_xml.index} +300 -0
  51. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta → mrna.fa} +0 -0
  52. data/test/test_files/all_validations_mrna/mrna.raw_seq +3970 -0
  53. data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} +901 -1
  54. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_tab → prot.blast_tab6} +416 -0
  55. data/test/test_files/all_validations_prot/prot.blast_tab7 +2400 -0
  56. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml → prot.blast_xml} +18299 -6723
  57. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.index → prot.blast_xml.index} +408 -0
  58. data/test/test_files/all_validations_prot/{all_validations_prot.fasta → prot.fa} +0 -0
  59. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq → prot.raw_seq} +2735 -0
  60. data/test/test_files/all_validations_prot/{all_validations_prot.fasta.blast_xml.raw_seq.idx → prot.raw_seq.idx} +3032 -1808
  61. data/test/test_sequences.rb +46 -41
  62. data/test/test_validation_open_reading_frame.rb +318 -202
  63. data/test/test_validations.rb +48 -32
  64. metadata +76 -102
  65. data/doc/AliasDuplicationError.html +0 -134
  66. data/doc/AlignmentValidation.html +0 -1687
  67. data/doc/AlignmentValidationOutput.html +0 -659
  68. data/doc/Blast.html +0 -1905
  69. data/doc/BlastRFValidationOutput.html +0 -545
  70. data/doc/BlastReadingFrameValidation.html +0 -370
  71. data/doc/BlastUtils.html +0 -875
  72. data/doc/ClasspathError.html +0 -134
  73. data/doc/Cluster.html +0 -1316
  74. data/doc/DuplciationValidationOutput.html +0 -564
  75. data/doc/DuplicationValidation.html +0 -920
  76. data/doc/DuplicationValidationOutput.html +0 -564
  77. data/doc/FileNotFoundException.html +0 -134
  78. data/doc/GeneMergeValidation.html +0 -935
  79. data/doc/GeneMergeValidationOutput.html +0 -652
  80. data/doc/HierarchicalClusterization.html +0 -994
  81. data/doc/Hsp.html +0 -1485
  82. data/doc/InconsistentTabularFormat.html +0 -135
  83. data/doc/LengthClusterValidation.html +0 -982
  84. data/doc/LengthClusterValidationOutput.html +0 -515
  85. data/doc/LengthRankValidation.html +0 -496
  86. data/doc/LengthRankValidationOutput.html +0 -517
  87. data/doc/NoInternetError.html +0 -135
  88. data/doc/NoMafftInstallationError.html +0 -134
  89. data/doc/NoPIdentError.html +0 -134
  90. data/doc/NoValidationError.html +0 -134
  91. data/doc/NotEnoughHitsError.html +0 -135
  92. data/doc/ORFValidationOutput.html +0 -593
  93. data/doc/OpenReadingFrameValidation.html +0 -1107
  94. data/doc/OtherError.html +0 -123
  95. data/doc/Output.html +0 -1540
  96. data/doc/Pair.html +0 -309
  97. data/doc/PairCluster.html +0 -767
  98. data/doc/Plot.html +0 -837
  99. data/doc/QueryError.html +0 -134
  100. data/doc/ReportClassError.html +0 -135
  101. data/doc/Sequence.html +0 -1299
  102. data/doc/SequenceTypeError.html +0 -135
  103. data/doc/TabularEntry.html +0 -837
  104. data/doc/TabularParser.html +0 -1104
  105. data/doc/Validation.html +0 -2147
  106. data/doc/ValidationClassError.html +0 -134
  107. data/doc/ValidationOutput.html +0 -460
  108. data/doc/ValidationReport.html +0 -940
  109. data/doc/ValidationTest.html +0 -939
  110. data/doc/_index.html +0 -449
  111. data/doc/class_list.html +0 -54
  112. data/doc/css/common.css +0 -1
  113. data/doc/css/full_list.css +0 -57
  114. data/doc/css/style.css +0 -338
  115. data/doc/file.README.html +0 -151
  116. data/doc/file_list.html +0 -56
  117. data/doc/frames.html +0 -26
  118. data/doc/index.html +0 -151
  119. data/doc/js/app.js +0 -214
  120. data/doc/js/full_list.js +0 -178
  121. data/doc/js/jquery.js +0 -4
  122. data/doc/method_list.html +0 -1505
  123. data/doc/top-level-namespace.html +0 -112
  124. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab +0 -967
  125. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index +0 -967
  126. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq +0 -4929
  127. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx +0 -1006
  128. data/test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq +0 -2075
  129. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index +0 -1864
  130. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq +0 -42411
  131. data/test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx +0 -3751
data/test/test_files/all_validations_mrna/{all_validations_mrna.fasta.blast_xml.raw_seq.idx → mrna.raw_seq.idx} RENAMED
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1366
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1367
+ sp|O13419|ACT_BOTFU:
1368
+ - 173273
1369
+ - 173674
1370
+ sp|P53500|ACT_CYAME:
1371
+ - 173674
1372
+ - 174077
1373
+ sp|P78711|ACT_NEUCR:
1374
+ - 174077
1375
+ - 174478
1376
+ sp|Q6TCF2|ACT_GAEGA:
1377
+ - 174478
1378
+ - 174879
1379
+ sp|Q9UVW9|ACTG_ACRCH:
1380
+ - 174879
1381
+ - 175281
1382
+ sp|P20359|ACTG_EMENI:
1383
+ - 175281
1384
+ - 175683
1385
+ sp|Q9URS0|ACTG_PENCH:
1386
+ - 175683
1387
+ - 176085
1388
+ sp|P53476|ACT_TOXGO:
1389
+ - 176085
1390
+ - 176487
1391
+ sp|P24902|ACT_PINCO:
1392
+ - 176487
1393
+ - 176672
1394
+ sp|Q8X119|ACT_EXODE:
1395
+ - 176672
1396
+ - 177073
1397
+ sp|P17128|ACT_KLULA:
1398
+ - 177073
1399
+ - 177474
1400
+ sp|P13363|ACT_PHYME:
1401
+ - 177474
1402
+ - 177875
1403
+ sp|P22132|ACT2_PHYIN:
1404
+ - 177875
1405
+ - 178277
1406
+ sp|P51775|ACT_GIAIN:
1407
+ - 178277
1408
+ - 178678
1409
+ sp|Q9P4D1|ACT_PICPG:
1410
+ - 178678
1411
+ - 179080
1412
+ sp|Q54I79|ACTY_DICDI:
1413
+ - 179080
1414
+ - 179490
1415
+ sp|P38673|ACTZ_NEUCR:
1416
+ - 179490
1417
+ - 179897
1418
+ sp|Q99023|ACT_HYPJE:
1419
+ - 179897
1420
+ - 180299
1421
+ sp|Q54L54|ACT29_DICDI:
1422
+ - 180299
1423
+ - 180714
1424
+ sp|P42023|ACTZ_PNECA:
1425
+ - 180714
1426
+ - 181126
1427
+ sp|P86288|ACT2_PLAFX:
1428
+ - 181126
1429
+ - 181529
1430
+ sp|Q8ILW9|ACT2_PLAF7:
1431
+ - 181529
1432
+ - 181932
1433
+ sp|Q7RPB4|ACT2_PLAYO:
1434
+ - 181932
1435
+ - 182335
1436
+ sp|P14883|ACT2_PLAFO:
1437
+ - 182335
1438
+ - 182738
1439
+ sp|Q9BYD9|ACTT3_HUMAN:
1440
+ - 182738
1441
+ - 183138
1442
+ sp|Q8SWN8|ACT_ENCCU:
1443
+ - 183138
1444
+ - 183539
1445
+ sp|P85515|ACTZ_RAT:
1446
+ - 183539
1447
+ - 183940
1448
+ sp|P61164|ACTZ_MOUSE:
1449
+ - 183940
1450
+ - 184343
1451
+ sp|Q4R6J9|ACTZ_MACFA:
1452
+ - 184343
1453
+ - 184746
1454
+ sp|P61163|ACTZ_HUMAN:
1455
+ - 184746
1456
+ - 185149
1457
+ sp|P61162|ACTZ_CANFA:
1458
+ - 185149
1459
+ - 185552
1460
+ sp|P42025|ACTY_HUMAN:
1461
+ - 185552
1462
+ - 185955
1463
+ sp|A4IFE3|ACTY_BOVIN:
1464
+ - 185955
1465
+ - 186358
1466
+ sp|Q8R5C5|ACTY_MOUSE:
1467
+ - 186358
1468
+ - 186761
1469
+ sp|Q54HE9|ACT27_DICDI:
1470
+ - 186761
1471
+ - 187161
1472
+ sp|P45889|ACTZ_DROME:
1473
+ - 187161
1474
+ - 187564
1475
+ sp|Q8BXF8|ACTT3_MOUSE:
1476
+ - 187564
1477
+ - 187961
1478
+ sp|Q54HE7|ACT28_DICDI:
1479
+ - 187961
1480
+ - 188342
1481
+ sp|Q9D9L5|ACTT2_MOUSE:
1482
+ - 188342
1483
+ - 188747
1484
+ sp|Q2TA43|ACTT2_BOVIN:
1485
+ - 188747
1486
+ - 189152
1487
+ sp|Q8TDG2|ACTT1_HUMAN:
1488
+ - 189152
1489
+ - 189556
1490
+ sp|Q4R821|ACTT1_MACFA:
1491
+ - 189556
1492
+ - 189959
1493
+ sp|Q4R317|ACTT2_MACFA:
1494
+ - 189959
1495
+ - 190364
1496
+ sp|Q8TDY3|ACTT2_HUMAN:
1497
+ - 190364
1498
+ - 190769
1499
+ sp|P32381|ARP2_YEAST:
1500
+ - 190769
1501
+ - 191187
1502
+ sp|P53489|ARP2_CAEEL:
1503
+ - 191187
1504
+ - 191609
1505
+ sp|P53487|ARP2_ACACA:
1506
+ - 191609
1507
+ - 192024
1508
+ sp|Q9D9J3|ACTT1_MOUSE:
1509
+ - 192024
1510
+ - 192428
1511
+ sp|O96621|ARP2_DICDI:
1512
+ - 192428
1513
+ - 192847
1514
+ sp|Q7ZTP2|ARP2A_XENLA:
1515
+ - 192847
1516
+ - 193269
1517
+ sp|P61161|ARP2_MOUSE:
1518
+ - 193269
1519
+ - 193690
1520
+ sp|P61160|ARP2_HUMAN:
1521
+ - 193690
1522
+ - 194111
1523
+ sp|A7MB62|ARP2_BOVIN:
1524
+ - 194111
1525
+ - 194532
1526
+ sp|Q5M7U6|ARP2_RAT:
1527
+ - 194532
1528
+ - 194951
1529
+ sp|P53488|ARP2_CHICK:
1530
+ - 194951
1531
+ - 195372
1532
+ sp|Q5BL41|ARP2_XENTR:
1533
+ - 195372
1534
+ - 195793
1535
+ sp|Q5XIK1|ACTT1_RAT:
1536
+ - 195793
1537
+ - 196195
1538
+ sp|Q7ZXV3|ARP2B_XENLA:
1539
+ - 196195
1540
+ - 196617
1541
+ sp|P10994|ACTS_PLEWA:
1542
+ - 196617
1543
+ - 196766
1544
+ sp|P45888|ARP2_DROME:
1545
+ - 196766
1546
+ - 197192
1547
+ sp|Q7SXW6|ARP2A_DANRE:
1548
+ - 197192
1549
+ - 197614
1550
+ sp|Q5R4K0|ARP2_PONAB:
1551
+ - 197614
1552
+ - 198035
1553
+ sp|Q56A35|ARP2B_DANRE:
1554
+ - 198035
1555
+ - 198457
1556
+ sp|Q61JZ2|ARP2_CAEBR:
1557
+ - 198457
1558
+ - 198877
1559
+ sp|O94630|ARP1_SCHPO:
1560
+ - 198877
1561
+ - 199283
1562
+ sp|Q4QR76|ACL7B_RAT:
1563
+ - 199283
1564
+ - 199727
1565
+ sp|Q641W9|ACL7A_RAT:
1566
+ - 199727
1567
+ - 200194
1568
+ sp|Q9QY83|ACL7B_MOUSE:
1569
+ - 200194
1570
+ - 200641
1571
+ sp|Q9Y614|ACL7B_HUMAN:
1572
+ - 200641
1573
+ - 201085
1574
+ sp|Q9UUJ1|ARP2_SCHPO:
1575
+ - 201085
1576
+ - 201502
1577
+ sp|Q32KZ2|ACL7A_BOVIN:
1578
+ - 201502
1579
+ - 201969
1580
+ sp|Q9QY84|ACL7A_MOUSE:
1581
+ - 201969
1582
+ - 202438
1583
+ sp|Q95JK8|ACL7B_MACFA:
1584
+ - 202438
1585
+ - 202882
1586
+ sp|P38696|ARP1_YEAST:
1587
+ - 202882
1588
+ - 203293
1589
+ sp|Q32L91|ACL7B_BOVIN:
1590
+ - 203293
1591
+ - 203739
1592
+ sp|Q4R6Q3|ACL7A_MACFA:
1593
+ - 203739
1594
+ - 204203
1595
+ sp|Q9Y615|ACL7A_HUMAN:
1596
+ - 204203
1597
+ - 204667
1598
+ sp|P30170|ACT10_SOLTU:
1599
+ - 204667
1600
+ - 204888
1601
+ sp|Q2T9W4|ACTL9_BOVIN:
1602
+ - 204888
1603
+ - 205333
1604
+ sp|A2YUL5|ARP2_ORYSI:
1605
+ - 205333
1606
+ - 205749
1607
+ sp|Q6Z256|ARP2_ORYSJ:
1608
+ - 205749
1609
+ - 206165
1610
+ sp|Q9LSD6|ARP2_ARATH:
1611
+ - 206165
1612
+ - 206581
1613
+ sp|Q8CG27|ACTL9_MOUSE:
1614
+ - 206581
1615
+ - 207025
1616
+ sp|Q25379|ACT3_LYTPI:
1617
+ - 207025
1618
+ - 207222
1619
+ sp|Q25381|ACTM_LYTPI:
1620
+ - 207222
1621
+ - 207419
1622
+ sp|Q25380|ACT4_LYTPI:
1623
+ - 207419
1624
+ - 207597
1625
+ sp|D0LWX4|BARP_HALO1:
1626
+ - 207597
1627
+ - 208001
1628
+ sp|P86700|ACT_CHIOP:
1629
+ - 208001
1630
+ - 208217
1631
+ sp|Q61WW9|ARP3_CAEBR:
1632
+ - 208217
1633
+ - 208671
1634
+ sp|Q9N4I0|ARP3_CAEEL:
1635
+ - 208671
1636
+ - 209124
1637
+ sp|Q8L4Y5|ARP7_ARATH:
1638
+ - 209124
1639
+ - 209514
1640
+ sp|Q8TC94|ACTL9_HUMAN:
1641
+ - 209514
1642
+ - 209959
1643
+ sp|A3ANB5|ARP7_ORYSJ:
1644
+ - 209959
1645
+ - 210346
1646
+ sp|A2XMK6|ARP7_ORYSI:
1647
+ - 210346
1648
+ - 210733
1649
+ sp|Q6AY16|ACTL9_RAT:
1650
+ - 210733
1651
+ - 211171
1652
+ sp|Q84M92|ARP4_ARATH:
1653
+ - 211171
1654
+ - 211640
1655
+ sp|P32392|ARP3_DROME:
1656
+ - 211640
1657
+ - 212086
1658
+ sp|O94805|ACL6B_HUMAN:
1659
+ - 212086
1660
+ - 212541
1661
+ sp|P86173|ACL6B_RAT:
1662
+ - 212541
1663
+ - 212994
1664
+ sp|Q99MR0|ACL6B_MOUSE:
1665
+ - 212994
1666
+ - 213449
1667
+ sp|A4FUX8|ACL6B_BOVIN:
1668
+ - 213449
1669
+ - 213904
1670
+ sp|P53490|ARP3_ACACA:
1671
+ - 213904
1672
+ - 214359
1673
+ sp|P42528|ARP3_DICDI:
1674
+ - 214359
1675
+ - 214805
1676
+ sp|O73723|ARP3_TAKRU:
1677
+ - 214805
1678
+ - 215251
1679
+ sp|Q90WD0|ARP3_CHICK:
1680
+ - 215251
1681
+ - 215697
1682
+ sp|Q11212|ACT_SPOLI:
1683
+ - 215697
1684
+ - 215885
1685
+ sp|Q4V7C7|ARP3_RAT:
1686
+ - 215885
1687
+ - 216329
1688
+ sp|Q99JY9|ARP3_MOUSE:
1689
+ - 216329
1690
+ - 216775
1691
+ sp|Q5R8R1|ARP3_PONAB:
1692
+ - 216775
1693
+ - 217221
1694
+ sp|P61158|ARP3_HUMAN:
1695
+ - 217221
1696
+ - 217667
1697
+ sp|P61157|ARP3_BOVIN:
1698
+ - 217667
1699
+ - 218113
1700
+ sp|P47117|ARP3_YEAST:
1701
+ - 218113
1702
+ - 218590
1703
+ sp|Q6ZJW9|ARP4_ORYSJ:
1704
+ - 218590
1705
+ - 219061
1706
+ sp|A2YR10|ARP4_ORYSI:
1707
+ - 219061
1708
+ - 219532
1709
+ sp|A2AKE7|ACL10_MOUSE:
1710
+ - 219532
1711
+ - 219906
1712
+ sp|Q7XR80|ARP8_ORYSJ:
1713
+ - 219906
1714
+ - 220419
1715
+ sp|A8WAT2|ARP8_ORYSI:
1716
+ - 220419
1717
+ - 220932
1718
+ sp|Q39596|ACT_OXYRB:
1719
+ - 220932
1720
+ - 221040
1721
+ sp|P78712|ARP3_NEUCR:
1722
+ - 221040
1723
+ - 221507
1724
+ sp|Q4P2E8|ARP4_USTMA:
1725
+ - 221507
1726
+ - 222070
1727
+ sp|Q5JWF8|ACL10_HUMAN:
1728
+ - 222070
1729
+ - 222342
1730
+ sp|Q09849|ARP42_SCHPO:
1731
+ - 222342
1732
+ - 222795
1733
+ sp|P32390|ARP3_SCHPO:
1734
+ - 222795
1735
+ - 223250
1736
+ sp|Q5AW89|ARP4_EMENI:
1737
+ - 223250
1738
+ - 223750
1739
+ sp|Q9FKT0|ARP8_ARATH:
1740
+ - 223750
1741
+ - 224249
1742
+ sp|P45890|ARP6_DROME:
1743
+ - 224249
1744
+ - 224674
1745
+ sp|Q4WHA3|ARP4_ASPFU:
1746
+ - 224674
1747
+ - 225168
1748
+ sp|Q4IPI4|ARP4_GIBZE:
1749
+ - 225168
1750
+ - 225667
1751
+ sp|Q9DEE9|ARP6_CHICK:
1752
+ - 225667
1753
+ - 226090
1754
+ sp|Q9H568|ACTL8_HUMAN:
1755
+ - 226090
1756
+ - 226484
1757
+ sp|Q6C061|ARP4_YARLI:
1758
+ - 226484
1759
+ - 226944
1760
+ sp|Q9GZN1|ARP6_HUMAN:
1761
+ - 226944
1762
+ - 227367
1763
+ sp|O94241|ARP6_SCHPO:
1764
+ - 227367
1765
+ - 227796
1766
+ sp|Q9D864|ARP6_MOUSE:
1767
+ - 227796
1768
+ - 228219
1769
+ sp|Q6C982|ARP6_YARLI:
1770
+ - 228219
1771
+ - 228633
1772
+ sp|Q8LGE3|ARP6_ARATH:
1773
+ - 228633
1774
+ - 229082
1775
+ sp|O96019|ACL6A_HUMAN:
1776
+ - 229082
1777
+ - 229540
1778
+ sp|Q9Z2N8|ACL6A_MOUSE:
1779
+ - 229540
1780
+ - 229998
1781
+ sp|Q4R333|ACL6A_MACFA:
1782
+ - 229998
1783
+ - 230456
1784
+ sp|Q5NBI2|ARP6_ORYSJ:
1785
+ - 230456
1786
+ - 230913
1787
+ sp|A2WNB0|ARP6_ORYSI:
1788
+ - 230913
1789
+ - 231370
1790
+ sp|Q6FJV8|ARP4_CANGA:
1791
+ - 231370
1792
+ - 231892
1793
+ sp|Q54KZ7|ARP6_DICDI:
1794
+ - 231892
1795
+ - 232411
1796
+ sp|Q7SHR0|ARP4_NEUCR:
1797
+ - 232411
1798
+ - 232908
1799
+ sp|P80428|ARP4_YEAST:
1800
+ - 232908
1801
+ - 233426
1802
+ sp|Q9P1U1|ARP3B_HUMAN:
1803
+ - 233426
1804
+ - 233873
1805
+ sp|Q9C0K3|ARP3C_HUMAN:
1806
+ - 233873
1807
+ - 234109
1808
+ sp|Q09443|ARP6_CAEEL:
1809
+ - 234109
1810
+ - 234555
1811
+ sp|Q641P0|ARP3B_MOUSE:
1812
+ - 234555
1813
+ - 235002
1814
+ sp|Q6CSB9|ARP4_KLULA:
1815
+ - 235002
1816
+ - 235551
1817
+ sp|Q9SAF1|ARP3_ARATH:
1818
+ - 235551
1819
+ - 236006
1820
+ sp|Q754G5|ARP4_ASHGO:
1821
+ - 236006
1822
+ - 236513
1823
+ sp|Q6K908|ARP3_ORYSJ:
1824
+ - 236513
1825
+ - 236969
1826
+ sp|A2X6S3|ARP3_ORYSI:
1827
+ - 236969
1828
+ - 237425
1829
+ sp|Q9H9F9|ARP5_HUMAN:
1830
+ - 237425
1831
+ - 238062
1832
+ sp|Q4W9M3|ARP6_ASPFU:
1833
+ - 238062
1834
+ - 238558
1835
+ sp|Q5AXH1|ARP6_EMENI:
1836
+ - 238558
1837
+ - 239065
1838
+ sp|Q5ZJA4|ARP5_CHICK:
1839
+ - 239065
1840
+ - 239706
1841
+ sp|Q7S6X6|ARP6_NEUCR:
1842
+ - 239706
1843
+ - 240180
1844
+ sp|Q24733|ACT_DICVI:
1845
+ - 240180
1846
+ - 240235
1847
+ sp|Q6BXN0|ARP4_DEBHA:
1848
+ - 240235
1849
+ - 240756
1850
+ sp|Q940Z2|ARP5_ARATH:
1851
+ - 240756
1852
+ - 241512
1853
+ sp|Q80US4|ARP5_MOUSE:
1854
+ - 241512
1855
+ - 242147
1856
+ sp|P85937|ACT2_PSEMZ:
1857
+ - 242147
1858
+ - 242202
1859
+ sp|Q5AC48|ARP4_CANAL:
1860
+ - 242202
1861
+ - 242699
1862
+ sp|Q9P7X7|ARP4_SCHPO:
1863
+ - 242699
1864
+ - 243160
1865
+ sp|Q12509|ARP6_YEAST:
1866
+ - 243160
1867
+ - 243626
1868
+ sp|Q17GZ9|ARP5_AEDAE:
1869
+ - 243626
1870
+ - 244312
1871
+ sp|Q6CJF4|ARP6_KLULA:
1872
+ - 244312
1873
+ - 244755
1874
+ sp|A2ZP58|ARP5_ORYSJ:
1875
+ - 244755
1876
+ - 245360
1877
+ sp|A2WKK5|ARP5_ORYSI:
1878
+ - 245360
1879
+ - 245965
1880
+ sp|P53946|ARP5_YEAST:
1881
+ - 245965
1882
+ - 246752
1883
+ sp|Q9Y7X8|ARP5_SCHPO:
1884
+ - 246752
1885
+ - 247505
1886
+ sp|Q3ZBD2|ARP10_BOVIN:
1887
+ - 247505
1888
+ - 247951
1889
+ sp|Q9VEC3|ARP5_DROME:
1890
+ - 247951
1891
+ - 248630
1892
+ sp|Q293V2|ARP5_DROPS:
1893
+ - 248630
1894
+ - 249312
1895
+ sp|Q9QZB7|ARP10_MOUSE:
1896
+ - 249312
1897
+ - 249758
1898
+ sp|P0CM04|ARP6_CRYNJ:
1899
+ - 249758
1900
+ - 250277
1901
+ sp|P0CM05|ARP6_CRYNB:
1902
+ - 250277
1903
+ - 250796
1904
+ sp|Q6FKE7|ARP6_CANGA:
1905
+ - 250796
1906
+ - 251244