xcoll 0.5.12__py3-none-any.whl → 0.6.1__py3-none-any.whl

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Files changed (336) hide show
  1. xcoll/__init__.py +5 -18
  2. xcoll/__init__.py.orig +26 -0
  3. xcoll/beam_elements/__init__.py +1 -0
  4. xcoll/beam_elements/absorber.py +12 -2
  5. xcoll/beam_elements/base.py +162 -62
  6. xcoll/beam_elements/blowup.py +1 -0
  7. xcoll/beam_elements/elements_src/black_absorber.h +57 -58
  8. xcoll/beam_elements/elements_src/black_crystal.h +49 -50
  9. xcoll/beam_elements/elements_src/everest_block.h +21 -11
  10. xcoll/beam_elements/elements_src/everest_collimator.h +100 -91
  11. xcoll/beam_elements/elements_src/everest_crystal.h +145 -140
  12. xcoll/beam_elements/elements_src/transparent_collimator.h +126 -0
  13. xcoll/beam_elements/elements_src/transparent_crystal.h +118 -0
  14. xcoll/beam_elements/everest.py +16 -5
  15. xcoll/beam_elements/monitor.py +1 -0
  16. xcoll/beam_elements/transparent.py +83 -0
  17. xcoll/colldb.py +15 -6
  18. xcoll/general.py +1 -1
  19. xcoll/general.py.orig +20 -0
  20. xcoll/headers/particle_states.py +51 -0
  21. xcoll/initial_distribution.py +121 -91
  22. xcoll/initial_distribution.py.orig +256 -0
  23. xcoll/interaction_record/interaction_record.py +2 -1
  24. xcoll/interaction_record/interaction_types.py +2 -2
  25. xcoll/line_tools.py +163 -73
  26. xcoll/lossmap.py +519 -127
  27. xcoll/plot.py +109 -0
  28. xcoll/rf_sweep.py +6 -0
  29. xcoll/scattering_routines/engine.py +414 -217
  30. xcoll/scattering_routines/environment.py +297 -0
  31. xcoll/scattering_routines/everest/amorphous.h +95 -71
  32. xcoll/scattering_routines/everest/{channeling.h → channelling.h} +121 -112
  33. xcoll/scattering_routines/everest/constants.h +1 -1
  34. xcoll/scattering_routines/everest/crystal_parameters.h +9 -9
  35. xcoll/scattering_routines/everest/everest.h +8 -3
  36. xcoll/scattering_routines/everest/everest.py +2 -1
  37. xcoll/scattering_routines/everest/ionisation_loss.h +141 -0
  38. xcoll/scattering_routines/everest/jaw.h +19 -24
  39. xcoll/scattering_routines/everest/materials.py +2 -0
  40. xcoll/scattering_routines/everest/multiple_coulomb_scattering.h +2 -2
  41. xcoll/scattering_routines/everest/nuclear_interaction.h +35 -19
  42. xcoll/scattering_routines/everest/properties.h +3 -72
  43. xcoll/xaux.py +65 -109
  44. {xcoll-0.5.12.dist-info → xcoll-0.6.1.dist-info}/METADATA +5 -5
  45. xcoll-0.6.1.dist-info/RECORD +138 -0
  46. xcoll/_manager.py +0 -22
  47. xcoll/headers/particle_states.h +0 -25
  48. xcoll/install.py +0 -35
  49. xcoll/scattering_routines/geant4/collimasim/.git +0 -1
  50. xcoll/scattering_routines/geant4/collimasim/.gitignore +0 -12
  51. xcoll/scattering_routines/geant4/collimasim/.gitmodules +0 -3
  52. xcoll/scattering_routines/geant4/collimasim/CMakeLists.txt +0 -26
  53. xcoll/scattering_routines/geant4/collimasim/README.md +0 -21
  54. xcoll/scattering_routines/geant4/collimasim/docs/Makefile +0 -20
  55. xcoll/scattering_routines/geant4/collimasim/docs/make.bat +0 -35
  56. xcoll/scattering_routines/geant4/collimasim/docs/source/collimasim.rst +0 -10
  57. xcoll/scattering_routines/geant4/collimasim/docs/source/conf.py +0 -59
  58. xcoll/scattering_routines/geant4/collimasim/docs/source/index.rst +0 -26
  59. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.appveyor.yml +0 -37
  60. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-format +0 -19
  61. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-tidy +0 -65
  62. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.cmake-format.yaml +0 -73
  63. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.git +0 -1
  64. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CODEOWNERS +0 -9
  65. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CONTRIBUTING.md +0 -386
  66. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/bug-report.yml +0 -45
  67. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/config.yml +0 -8
  68. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/dependabot.yml +0 -16
  69. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler.yml +0 -8
  70. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler_merged.yml +0 -3
  71. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/pull_request_template.md +0 -19
  72. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/ci.yml +0 -969
  73. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/configure.yml +0 -84
  74. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/format.yml +0 -48
  75. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/labeler.yml +0 -16
  76. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/pip.yml +0 -103
  77. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.gitignore +0 -45
  78. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.pre-commit-config.yaml +0 -151
  79. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.readthedocs.yml +0 -3
  80. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/CMakeLists.txt +0 -297
  81. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/LICENSE +0 -29
  82. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/MANIFEST.in +0 -6
  83. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/README.rst +0 -180
  84. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Doxyfile +0 -23
  85. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Makefile +0 -192
  86. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/_static/theme_overrides.css +0 -11
  87. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/chrono.rst +0 -81
  88. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/custom.rst +0 -93
  89. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/eigen.rst +0 -310
  90. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/functional.rst +0 -109
  91. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/index.rst +0 -43
  92. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/overview.rst +0 -171
  93. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/stl.rst +0 -251
  94. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/strings.rst +0 -305
  95. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/classes.rst +0 -1297
  96. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/embedding.rst +0 -262
  97. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/exceptions.rst +0 -396
  98. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/functions.rst +0 -568
  99. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/misc.rst +0 -337
  100. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/index.rst +0 -13
  101. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/numpy.rst +0 -463
  102. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/object.rst +0 -286
  103. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/utilities.rst +0 -155
  104. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/smart_ptrs.rst +0 -174
  105. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/basics.rst +0 -308
  106. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.py +0 -91
  107. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.rst +0 -95
  108. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/changelog.rst +0 -2050
  109. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/classes.rst +0 -542
  110. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/cmake/index.rst +0 -8
  111. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/compiling.rst +0 -648
  112. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/conf.py +0 -381
  113. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/faq.rst +0 -343
  114. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/index.rst +0 -48
  115. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/installing.rst +0 -105
  116. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/limitations.rst +0 -72
  117. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11-logo.png +0 -0
  118. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.png +0 -0
  119. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.svg +0 -427
  120. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.png +0 -0
  121. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.svg +0 -427
  122. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/reference.rst +0 -130
  123. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/release.rst +0 -96
  124. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/requirements.txt +0 -8
  125. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/upgrade.rst +0 -548
  126. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/attr.h +0 -605
  127. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/buffer_info.h +0 -144
  128. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/cast.h +0 -1432
  129. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/chrono.h +0 -213
  130. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/common.h +0 -2
  131. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/complex.h +0 -65
  132. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/class.h +0 -709
  133. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/common.h +0 -1021
  134. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/descr.h +0 -104
  135. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/init.h +0 -346
  136. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/internals.h +0 -467
  137. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/type_caster_base.h +0 -978
  138. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/typeid.h +0 -55
  139. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eigen.h +0 -606
  140. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/embed.h +0 -284
  141. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eval.h +0 -163
  142. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/functional.h +0 -121
  143. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/gil.h +0 -193
  144. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/iostream.h +0 -275
  145. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/numpy.h +0 -1741
  146. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/operators.h +0 -163
  147. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/options.h +0 -65
  148. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pybind11.h +0 -2497
  149. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pytypes.h +0 -1879
  150. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl/filesystem.h +0 -103
  151. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl.h +0 -375
  152. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl_bind.h +0 -747
  153. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/noxfile.py +0 -88
  154. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__init__.py +0 -11
  155. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__main__.py +0 -52
  156. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.py +0 -12
  157. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.pyi +0 -6
  158. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/commands.py +0 -21
  159. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/py.typed +0 -0
  160. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.py +0 -482
  161. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.pyi +0 -63
  162. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pyproject.toml +0 -41
  163. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.cfg +0 -56
  164. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.py +0 -155
  165. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/CMakeLists.txt +0 -503
  166. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/conftest.py +0 -208
  167. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/constructor_stats.h +0 -275
  168. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/cross_module_gil_utils.cpp +0 -73
  169. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/env.py +0 -33
  170. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/pytest.ini +0 -0
  171. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/test_files.py +0 -279
  172. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/pytest.ini +0 -0
  173. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/test_setuphelper.py +0 -143
  174. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/local_bindings.h +0 -85
  175. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/object.h +0 -179
  176. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_cross_module_tests.cpp +0 -151
  177. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.cpp +0 -91
  178. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.h +0 -85
  179. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pytest.ini +0 -19
  180. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/requirements.txt +0 -12
  181. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.cpp +0 -26
  182. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.py +0 -25
  183. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.cpp +0 -216
  184. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.py +0 -163
  185. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.cpp +0 -286
  186. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.py +0 -536
  187. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.cpp +0 -107
  188. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.py +0 -248
  189. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.cpp +0 -227
  190. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.py +0 -202
  191. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.cpp +0 -84
  192. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.py +0 -210
  193. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.cpp +0 -550
  194. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.py +0 -473
  195. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/CMakeLists.txt +0 -84
  196. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/embed.cpp +0 -21
  197. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_embed/CMakeLists.txt +0 -28
  198. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_function/CMakeLists.txt +0 -39
  199. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_target/CMakeLists.txt +0 -46
  200. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/main.cpp +0 -6
  201. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_embed/CMakeLists.txt +0 -41
  202. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_function/CMakeLists.txt +0 -35
  203. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_target/CMakeLists.txt +0 -41
  204. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/test.py +0 -10
  205. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.cpp +0 -165
  206. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.py +0 -53
  207. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.cpp +0 -238
  208. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.py +0 -126
  209. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.cpp +0 -141
  210. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.py +0 -117
  211. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.cpp +0 -41
  212. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.py +0 -50
  213. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.cpp +0 -69
  214. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.py +0 -42
  215. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.cpp +0 -348
  216. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.py +0 -771
  217. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/CMakeLists.txt +0 -47
  218. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/catch.cpp +0 -22
  219. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/external_module.cpp +0 -23
  220. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.cpp +0 -326
  221. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.py +0 -15
  222. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.cpp +0 -148
  223. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.py +0 -272
  224. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.cpp +0 -119
  225. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.py +0 -51
  226. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval_call.py +0 -5
  227. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.cpp +0 -285
  228. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.h +0 -12
  229. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.py +0 -265
  230. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.cpp +0 -397
  231. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.py +0 -520
  232. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.cpp +0 -49
  233. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.py +0 -94
  234. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.cpp +0 -125
  235. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.py +0 -331
  236. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.cpp +0 -153
  237. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.py +0 -284
  238. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.cpp +0 -107
  239. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.py +0 -257
  240. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.cpp +0 -412
  241. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.py +0 -517
  242. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.cpp +0 -102
  243. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.py +0 -92
  244. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.cpp +0 -233
  245. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.py +0 -360
  246. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.cpp +0 -472
  247. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.py +0 -593
  248. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.cpp +0 -524
  249. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.py +0 -441
  250. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.cpp +0 -103
  251. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.py +0 -267
  252. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.cpp +0 -73
  253. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.py +0 -59
  254. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.cpp +0 -235
  255. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.py +0 -146
  256. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.cpp +0 -189
  257. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.py +0 -82
  258. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.cpp +0 -560
  259. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.py +0 -651
  260. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.cpp +0 -500
  261. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.py +0 -253
  262. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.cpp +0 -452
  263. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.py +0 -318
  264. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.cpp +0 -342
  265. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.py +0 -291
  266. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.cpp +0 -131
  267. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.py +0 -318
  268. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.cpp +0 -144
  269. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.py +0 -29
  270. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.cpp +0 -66
  271. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.py +0 -44
  272. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.cpp +0 -22
  273. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.py +0 -9
  274. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.cpp +0 -510
  275. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.py +0 -408
  276. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-numpy-scipy.supp +0 -140
  277. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-python.supp +0 -117
  278. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindCatch.cmake +0 -70
  279. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindEigen3.cmake +0 -86
  280. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindPythonLibsNew.cmake +0 -257
  281. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/check-style.sh +0 -44
  282. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/cmake_uninstall.cmake.in +0 -23
  283. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/libsize.py +0 -39
  284. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/make_changelog.py +0 -64
  285. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Common.cmake +0 -402
  286. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Config.cmake.in +0 -233
  287. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11NewTools.cmake +0 -276
  288. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Tools.cmake +0 -214
  289. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pyproject.toml +0 -3
  290. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_global.py.in +0 -65
  291. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_main.py.in +0 -41
  292. xcoll/scattering_routines/geant4/collimasim/pyproject.toml +0 -8
  293. xcoll/scattering_routines/geant4/collimasim/setup.py +0 -144
  294. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.cpp +0 -403
  295. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.hh +0 -100
  296. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.cpp +0 -763
  297. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.hh +0 -118
  298. xcoll/scattering_routines/geant4/collimasim/src/collimasim/__init__.py +0 -8
  299. xcoll/scattering_routines/geant4/collimasim/src/collimasim/bindings.cpp +0 -63
  300. xcoll/scattering_routines/geant4/collimasim/src/collimasim/pyCollimatorPass.py +0 -142
  301. xcoll/scattering_routines/geant4/collimasim/src/collimasim/xtrack_collimator.py +0 -556
  302. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/PKG-INFO +0 -6
  303. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/SOURCES.txt +0 -24
  304. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/dependency_links.txt +0 -1
  305. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/not-zip-safe +0 -1
  306. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/top_level.txt +0 -1
  307. xcoll/scattering_routines/geant4/collimasim/tests/README.md +0 -25
  308. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_forions.dat +0 -25
  309. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_new_example.dat +0 -18
  310. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_old_example.dat +0 -68
  311. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_testing.dat +0 -15
  312. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_yaml_example.yaml +0 -110
  313. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps.dat +0 -7
  314. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps_pyat_test.dat +0 -3
  315. xcoll/scattering_routines/geant4/collimasim/tests/resources/collonly_twiss_file_example.tfs +0 -54
  316. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings.gmad +0 -3
  317. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_black_absorber.gmad +0 -3
  318. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_ions.gmad +0 -5
  319. xcoll/scattering_routines/geant4/collimasim/tests/resources/twiss_file_testing.tfs +0 -51
  320. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat.py +0 -65
  321. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_passmethod.py +0 -59
  322. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_tracking.py +0 -102
  323. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack.py +0 -75
  324. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_angle.py +0 -74
  325. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_colldb_load.py +0 -84
  326. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction.py +0 -159
  327. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction_ion.py +0 -99
  328. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_ions.py +0 -78
  329. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_lost_energy.py +0 -88
  330. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tilt.py +0 -80
  331. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking.py +0 -97
  332. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking_ions.py +0 -96
  333. xcoll-0.5.12.dist-info/RECORD +0 -415
  334. {xcoll-0.5.12.dist-info → xcoll-0.6.1.dist-info}/LICENSE +0 -0
  335. {xcoll-0.5.12.dist-info → xcoll-0.6.1.dist-info}/NOTICE +0 -0
  336. {xcoll-0.5.12.dist-info → xcoll-0.6.1.dist-info}/WHEEL +0 -0
@@ -1,63 +0,0 @@
1
- # IMPORTANT: Should stay in sync with setup_helpers.py (mostly checked by CI /
2
- # pre-commit).
3
-
4
- import contextlib
5
- import distutils.ccompiler
6
- from distutils.command.build_ext import build_ext as _build_ext # type: ignore
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- from distutils.extension import Extension as _Extension
8
- from types import TracebackType
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- from typing import Any, Callable, Dict, Iterator, List, Optional, Type, TypeVar, Union
10
-
11
- WIN: bool
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- PY2: bool
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- MACOS: bool
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- STD_TMPL: str
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-
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- class Pybind11Extension(_Extension):
17
- def _add_cflags(self, *flags: str) -> None: ...
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- def _add_lflags(self, *flags: str) -> None: ...
19
- def __init__(
20
- self, *args: Any, cxx_std: int = 0, language: str = "c++", **kwargs: Any
21
- ) -> None: ...
22
- @property
23
- def cxx_std(self) -> int: ...
24
- @cxx_std.setter
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- def cxx_std(self, level: int) -> None: ...
26
-
27
- @contextlib.contextmanager
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- def tmp_chdir() -> Iterator[str]: ...
29
- def has_flag(compiler: distutils.ccompiler.CCompiler, flag: str) -> bool: ...
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- def auto_cpp_level(compiler: distutils.ccompiler.CCompiler) -> Union[int, str]: ...
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-
32
- class build_ext(_build_ext): # type: ignore
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- def build_extensions(self) -> None: ...
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-
35
- def intree_extensions(
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- paths: Iterator[str], package_dir: Optional[Dict[str, str]] = None
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- ) -> List[Pybind11Extension]: ...
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- def no_recompile(obj: str, src: str) -> bool: ...
39
- def naive_recompile(obj: str, src: str) -> bool: ...
40
-
41
- T = TypeVar("T", bound="ParallelCompile")
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-
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- class ParallelCompile:
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- envvar: Optional[str]
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- default: int
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- max: int
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- needs_recompile: Callable[[str, str], bool]
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- def __init__(
49
- self,
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- envvar: Optional[str] = None,
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- default: int = 0,
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- max: int = 0,
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- needs_recompile: Callable[[str, str], bool] = no_recompile,
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- ) -> None: ...
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- def function(self) -> Any: ...
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- def install(self: T) -> T: ...
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- def __enter__(self: T) -> T: ...
58
- def __exit__(
59
- self,
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- exc_type: Optional[Type[BaseException]],
61
- exc_value: Optional[BaseException],
62
- traceback: Optional[TracebackType],
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- ) -> None: ...
@@ -1,41 +0,0 @@
1
- [build-system]
2
- requires = ["setuptools>=42", "wheel", "cmake>=3.18", "ninja"]
3
- build-backend = "setuptools.build_meta"
4
-
5
- [tool.check-manifest]
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- ignore = [
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- "tests/**",
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- "docs/**",
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- "tools/**",
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- "include/**",
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- ".*",
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- "pybind11/include/**",
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- "pybind11/share/**",
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- "CMakeLists.txt",
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- "noxfile.py",
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- ]
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-
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- [tool.isort]
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- # Needs the compiled .so modules and env.py from tests
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- known_first_party = "env,pybind11_cross_module_tests,pybind11_tests,"
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- # For black compatibility
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- profile = "black"
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-
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- [tool.mypy]
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- files = "pybind11"
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- python_version = "2.7"
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- warn_unused_configs = true
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-
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- disallow_any_generics = true
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- disallow_subclassing_any = true
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- disallow_untyped_calls = true
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- disallow_untyped_defs = true
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- disallow_incomplete_defs = true
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- check_untyped_defs = true
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- disallow_untyped_decorators = true
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- no_implicit_optional = true
37
- warn_redundant_casts = true
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- warn_unused_ignores = true
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- warn_return_any = true
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- no_implicit_reexport = true
41
- strict_equality = true
@@ -1,56 +0,0 @@
1
- [metadata]
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- long_description = file: README.rst
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- long_description_content_type = text/x-rst
4
- description = Seamless operability between C++11 and Python
5
- author = Wenzel Jakob
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- author_email = wenzel.jakob@epfl.ch
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- url = https://github.com/pybind/pybind11
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- license = BSD
9
-
10
- classifiers =
11
- Development Status :: 5 - Production/Stable
12
- Intended Audience :: Developers
13
- Topic :: Software Development :: Libraries :: Python Modules
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- Topic :: Utilities
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- Programming Language :: C++
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- Programming Language :: Python :: 2.7
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- Programming Language :: Python :: 3
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- Programming Language :: Python :: 3.5
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- Programming Language :: Python :: 3.6
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- Programming Language :: Python :: 3.7
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- Programming Language :: Python :: 3.8
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- Programming Language :: Python :: 3.9
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- Programming Language :: Python :: 3.10
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- License :: OSI Approved :: BSD License
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- Programming Language :: Python :: Implementation :: PyPy
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- Programming Language :: Python :: Implementation :: CPython
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- Programming Language :: C++
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- Topic :: Software Development :: Libraries :: Python Modules
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-
30
- keywords =
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- C++11
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- Python bindings
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-
34
- [options]
35
- python_requires = >=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4
36
- zip_safe = False
37
-
38
- [bdist_wheel]
39
- universal=1
40
-
41
-
42
- [flake8]
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- max-line-length = 99
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- show_source = True
45
- exclude = .git, __pycache__, build, dist, docs, tools, venv
46
- ignore =
47
- # required for pretty matrix formatting: multiple spaces after `,` and `[`
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- E201, E241, W504,
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- # camelcase 'cPickle' imported as lowercase 'pickle'
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- N813
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- # Black conflict
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- W503, E203
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-
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-
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- [tool:pytest]
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- timeout = 300
@@ -1,155 +0,0 @@
1
- #!/usr/bin/env python
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- # -*- coding: utf-8 -*-
3
-
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- # Setup script for PyPI; use CMakeFile.txt to build extension modules
5
-
6
- import contextlib
7
- import io
8
- import os
9
- import re
10
- import shutil
11
- import string
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- import subprocess
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- import sys
14
- import tempfile
15
-
16
- import setuptools.command.sdist
17
-
18
- DIR = os.path.abspath(os.path.dirname(__file__))
19
- VERSION_REGEX = re.compile(
20
- r"^\s*#\s*define\s+PYBIND11_VERSION_([A-Z]+)\s+(.*)$", re.MULTILINE
21
- )
22
-
23
-
24
- def build_expected_version_hex(matches):
25
- patch_level_serial = matches["PATCH"]
26
- serial = None
27
- try:
28
- major = int(matches["MAJOR"])
29
- minor = int(matches["MINOR"])
30
- flds = patch_level_serial.split(".")
31
- if flds:
32
- patch = int(flds[0])
33
- level = None
34
- if len(flds) == 1:
35
- level = "0"
36
- serial = 0
37
- elif len(flds) == 2:
38
- level_serial = flds[1]
39
- for level in ("a", "b", "c", "dev"):
40
- if level_serial.startswith(level):
41
- serial = int(level_serial[len(level) :])
42
- break
43
- except ValueError:
44
- pass
45
- if serial is None:
46
- msg = 'Invalid PYBIND11_VERSION_PATCH: "{}"'.format(patch_level_serial)
47
- raise RuntimeError(msg)
48
- return "0x{:02x}{:02x}{:02x}{}{:x}".format(
49
- major, minor, patch, level[:1].upper(), serial
50
- )
51
-
52
-
53
- # PYBIND11_GLOBAL_SDIST will build a different sdist, with the python-headers
54
- # files, and the sys.prefix files (CMake and headers).
55
-
56
- global_sdist = os.environ.get("PYBIND11_GLOBAL_SDIST", False)
57
-
58
- setup_py = "tools/setup_global.py.in" if global_sdist else "tools/setup_main.py.in"
59
- extra_cmd = 'cmdclass["sdist"] = SDist\n'
60
-
61
- to_src = (
62
- ("pyproject.toml", "tools/pyproject.toml"),
63
- ("setup.py", setup_py),
64
- )
65
-
66
- # Read the listed version
67
- with open("pybind11/_version.py") as f:
68
- code = compile(f.read(), "pybind11/_version.py", "exec")
69
- loc = {}
70
- exec(code, loc)
71
- version = loc["__version__"]
72
-
73
- # Verify that the version matches the one in C++
74
- with io.open("include/pybind11/detail/common.h", encoding="utf8") as f:
75
- matches = dict(VERSION_REGEX.findall(f.read()))
76
- cpp_version = "{MAJOR}.{MINOR}.{PATCH}".format(**matches)
77
- if version != cpp_version:
78
- msg = "Python version {} does not match C++ version {}!".format(
79
- version, cpp_version
80
- )
81
- raise RuntimeError(msg)
82
-
83
- version_hex = matches.get("HEX", "MISSING")
84
- expected_version_hex = build_expected_version_hex(matches)
85
- if version_hex != expected_version_hex:
86
- msg = "PYBIND11_VERSION_HEX {} does not match expected value {}!".format(
87
- version_hex,
88
- expected_version_hex,
89
- )
90
- raise RuntimeError(msg)
91
-
92
-
93
- def get_and_replace(filename, binary=False, **opts):
94
- with open(filename, "rb" if binary else "r") as f:
95
- contents = f.read()
96
- # Replacement has to be done on text in Python 3 (both work in Python 2)
97
- if binary:
98
- return string.Template(contents.decode()).substitute(opts).encode()
99
- else:
100
- return string.Template(contents).substitute(opts)
101
-
102
-
103
- # Use our input files instead when making the SDist (and anything that depends
104
- # on it, like a wheel)
105
- class SDist(setuptools.command.sdist.sdist):
106
- def make_release_tree(self, base_dir, files):
107
- setuptools.command.sdist.sdist.make_release_tree(self, base_dir, files)
108
-
109
- for to, src in to_src:
110
- txt = get_and_replace(src, binary=True, version=version, extra_cmd="")
111
-
112
- dest = os.path.join(base_dir, to)
113
-
114
- # This is normally linked, so unlink before writing!
115
- os.unlink(dest)
116
- with open(dest, "wb") as f:
117
- f.write(txt)
118
-
119
-
120
- # Backport from Python 3
121
- @contextlib.contextmanager
122
- def TemporaryDirectory(): # noqa: N802
123
- "Prepare a temporary directory, cleanup when done"
124
- try:
125
- tmpdir = tempfile.mkdtemp()
126
- yield tmpdir
127
- finally:
128
- shutil.rmtree(tmpdir)
129
-
130
-
131
- # Remove the CMake install directory when done
132
- @contextlib.contextmanager
133
- def remove_output(*sources):
134
- try:
135
- yield
136
- finally:
137
- for src in sources:
138
- shutil.rmtree(src)
139
-
140
-
141
- with remove_output("pybind11/include", "pybind11/share"):
142
- # Generate the files if they are not present.
143
- with TemporaryDirectory() as tmpdir:
144
- cmd = ["cmake", "-S", ".", "-B", tmpdir] + [
145
- "-DCMAKE_INSTALL_PREFIX=pybind11",
146
- "-DBUILD_TESTING=OFF",
147
- "-DPYBIND11_NOPYTHON=ON",
148
- ]
149
- cmake_opts = dict(cwd=DIR, stdout=sys.stdout, stderr=sys.stderr)
150
- subprocess.check_call(cmd, **cmake_opts)
151
- subprocess.check_call(["cmake", "--install", tmpdir], **cmake_opts)
152
-
153
- txt = get_and_replace(setup_py, version=version, extra_cmd=extra_cmd)
154
- code = compile(txt, setup_py, "exec")
155
- exec(code, {"SDist": SDist})