sequenzo 0.1.18__cp311-cp311-macosx_10_9_universal2.whl → 0.1.19__cp311-cp311-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h

@@ -1,118 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_BESSELFUNCTIONS_PACKETMATH_H
-#define EIGEN_BESSELFUNCTIONS_PACKETMATH_H
-
-namespace Eigen {
-
-namespace internal {
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero i0(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_i0(const Packet& x) {
-  return numext::bessel_i0(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero i0e(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_i0e(const Packet& x) {
-  return numext::bessel_i0e(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one i1(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_i1(const Packet& x) {
-  return numext::bessel_i1(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one i1e(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_i1e(const Packet& x) {
-  return numext::bessel_i1e(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero j0(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_j0(const Packet& x) {
-  return numext::bessel_j0(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero j1(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_j1(const Packet& x) {
-  return numext::bessel_j1(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one y0(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_y0(const Packet& x) {
-  return numext::bessel_y0(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one y1(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_y1(const Packet& x) {
-  return numext::bessel_y1(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero k0(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_k0(const Packet& x) {
-  return numext::bessel_k0(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order zero k0e(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_k0e(const Packet& x) {
-  return numext::bessel_k0e(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one k1e(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_k1(const Packet& x) {
-  return numext::bessel_k1(x);
-}
-
-/** \internal \returns the exponentially scaled modified Bessel function of
- * order one k1e(\a a) (coeff-wise) */
-template <typename Packet>
-EIGEN_DEVICE_FUNC EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
-Packet pbessel_k1e(const Packet& x) {
-  return numext::bessel_k1e(x);
-}
-
-} // end namespace internal
-
-} // end namespace Eigen
-
-#endif // EIGEN_BESSELFUNCTIONS_PACKETMATH_H
-

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h

@@ -1,67 +0,0 @@
-#ifndef HIP_VECTOR_COMPATIBILITY_H
-#define HIP_VECTOR_COMPATIBILITY_H
-
-namespace hip_impl {
-  template <typename, typename, unsigned int> struct Scalar_accessor;
-}   // end namespace hip_impl
-
-namespace Eigen {
-namespace internal {
-
-#define HIP_SCALAR_ACCESSOR_BUILDER(NAME) \
-template <typename T, typename U, unsigned int n> \
-struct NAME <hip_impl::Scalar_accessor<T, U, n>> : NAME <T> {};
-
-#define HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(NAME) \
-template <typename T, typename U, unsigned int n> \
-struct NAME##_impl <hip_impl::Scalar_accessor<T, U, n>> : NAME##_impl <T> {}; \
-template <typename T, typename U, unsigned int n> \
-struct NAME##_retval <hip_impl::Scalar_accessor<T, U, n>> : NAME##_retval <T> {};
-
-#define HIP_SCALAR_ACCESSOR_BUILDER_IGAMMA(NAME) \
-template <typename T, typename U, unsigned int n, IgammaComputationMode mode> \
-struct NAME <hip_impl::Scalar_accessor<T, U, n>, mode> : NAME <T, mode> {};
-
-#if EIGEN_HAS_C99_MATH
-HIP_SCALAR_ACCESSOR_BUILDER(betainc_helper)
-HIP_SCALAR_ACCESSOR_BUILDER(incbeta_cfe)
-
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(erf)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(erfc)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(igammac)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(lgamma)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(ndtri)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(polygamma)
-
-HIP_SCALAR_ACCESSOR_BUILDER_IGAMMA(igamma_generic_impl)
-#endif
-
-HIP_SCALAR_ACCESSOR_BUILDER(digamma_impl_maybe_poly)
-HIP_SCALAR_ACCESSOR_BUILDER(zeta_impl_series)
-
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_i0)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_i0e)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_i1)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_i1e)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_j0)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_j1)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_k0)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_k0e)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_k1)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_k1e)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_y0)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(bessel_y1)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(betainc)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(digamma)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(gamma_sample_der_alpha)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(igamma_der_a)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(igamma)
-HIP_SCALAR_ACCESSOR_BUILDER_RETVAL(zeta)
-
-HIP_SCALAR_ACCESSOR_BUILDER_IGAMMA(igamma_series_impl)
-HIP_SCALAR_ACCESSOR_BUILDER_IGAMMA(igammac_cf_impl)
-
-}  // end namespace internal
-}  // end namespace Eigen
-
-#endif  // HIP_VECTOR_COMPATIBILITY_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h

@@ -1,167 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-
-#ifndef EIGEN_SPECIALFUNCTIONS_ARRAYAPI_H
-#define EIGEN_SPECIALFUNCTIONS_ARRAYAPI_H
-
-namespace Eigen {
-
-/** \cpp11 \returns an expression of the coefficient-wise igamma(\a a, \a x) to the given arrays.
-  *
-  * This function computes the coefficient-wise incomplete gamma function.
-  *
-  * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations of igammac(T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::igammac(), Eigen::lgamma()
-  */
-template<typename Derived,typename ExponentDerived>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_igamma_op<typename Derived::Scalar>, const Derived, const ExponentDerived>
-igamma(const Eigen::ArrayBase<Derived>& a, const Eigen::ArrayBase<ExponentDerived>& x)
-{
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_igamma_op<typename Derived::Scalar>, const Derived, const ExponentDerived>(
-    a.derived(),
-    x.derived()
-  );
-}
-
-/** \cpp11 \returns an expression of the coefficient-wise igamma_der_a(\a a, \a x) to the given arrays.
-  *
-  * This function computes the coefficient-wise derivative of the incomplete
-  * gamma function with respect to the parameter a.
-  *
-  * \note This function supports only float and double scalar types in c++11
-  * mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations
-  * of igamma_der_a(T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::igamma(), Eigen::lgamma()
-  */
-template <typename Derived, typename ExponentDerived>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_igamma_der_a_op<typename Derived::Scalar>, const Derived, const ExponentDerived>
-igamma_der_a(const Eigen::ArrayBase<Derived>& a, const Eigen::ArrayBase<ExponentDerived>& x) {
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_igamma_der_a_op<typename Derived::Scalar>, const Derived, const ExponentDerived>(
-    a.derived(),
-    x.derived());
-}
-
-/** \cpp11 \returns an expression of the coefficient-wise gamma_sample_der_alpha(\a alpha, \a sample) to the given arrays.
-  *
-  * This function computes the coefficient-wise derivative of the sample
-  * of a Gamma(alpha, 1) random variable with respect to the parameter alpha.
-  *
-  * \note This function supports only float and double scalar types in c++11
-  * mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations
-  * of gamma_sample_der_alpha(T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::igamma(), Eigen::lgamma()
-  */
-template <typename AlphaDerived, typename SampleDerived>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_gamma_sample_der_alpha_op<typename AlphaDerived::Scalar>, const AlphaDerived, const SampleDerived>
-gamma_sample_der_alpha(const Eigen::ArrayBase<AlphaDerived>& alpha, const Eigen::ArrayBase<SampleDerived>& sample) {
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_gamma_sample_der_alpha_op<typename AlphaDerived::Scalar>, const AlphaDerived, const SampleDerived>(
-      alpha.derived(),
-      sample.derived());
-}
-
-/** \cpp11 \returns an expression of the coefficient-wise igammac(\a a, \a x) to the given arrays.
-  *
-  * This function computes the coefficient-wise complementary incomplete gamma function.
-  *
-  * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations of igammac(T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::igamma(), Eigen::lgamma()
-  */
-template<typename Derived,typename ExponentDerived>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_igammac_op<typename Derived::Scalar>, const Derived, const ExponentDerived>
-igammac(const Eigen::ArrayBase<Derived>& a, const Eigen::ArrayBase<ExponentDerived>& x)
-{
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_igammac_op<typename Derived::Scalar>, const Derived, const ExponentDerived>(
-    a.derived(),
-    x.derived()
-  );
-}
-
-/** \cpp11 \returns an expression of the coefficient-wise polygamma(\a n, \a x) to the given arrays.
-  *
-  * It returns the \a n -th derivative of the digamma(psi) evaluated at \c x.
-  *
-  * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations of polygamma(T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::digamma()
-  */
-// * \warning Be careful with the order of the parameters: x.polygamma(n) is equivalent to polygamma(n,x)
-// * \sa ArrayBase::polygamma()
-template<typename DerivedN,typename DerivedX>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_polygamma_op<typename DerivedX::Scalar>, const DerivedN, const DerivedX>
-polygamma(const Eigen::ArrayBase<DerivedN>& n, const Eigen::ArrayBase<DerivedX>& x)
-{
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_polygamma_op<typename DerivedX::Scalar>, const DerivedN, const DerivedX>(
-    n.derived(),
-    x.derived()
-  );
-}
-
-/** \cpp11 \returns an expression of the coefficient-wise betainc(\a x, \a a, \a b) to the given arrays.
-  *
-  * This function computes the regularized incomplete beta function (integral).
-  *
-  * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
-  * or float/double in non c++11 mode, the user has to provide implementations of betainc(T,T,T) for any scalar
-  * type T to be supported.
-  *
-  * \sa Eigen::betainc(), Eigen::lgamma()
-  */
-template<typename ArgADerived, typename ArgBDerived, typename ArgXDerived>
-EIGEN_STRONG_INLINE const Eigen::CwiseTernaryOp<Eigen::internal::scalar_betainc_op<typename ArgXDerived::Scalar>, const ArgADerived, const ArgBDerived, const ArgXDerived>
-betainc(const Eigen::ArrayBase<ArgADerived>& a, const Eigen::ArrayBase<ArgBDerived>& b, const Eigen::ArrayBase<ArgXDerived>& x)
-{
-  return Eigen::CwiseTernaryOp<Eigen::internal::scalar_betainc_op<typename ArgXDerived::Scalar>, const ArgADerived, const ArgBDerived, const ArgXDerived>(
-    a.derived(),
-    b.derived(),
-    x.derived()
-  );
-}
-
-
-/** \returns an expression of the coefficient-wise zeta(\a x, \a q) to the given arrays.
-  *
-  * It returns the Riemann zeta function of two arguments \a x and \a q:
-  *
-  * \param x is the exponent, it must be > 1
-  * \param q is the shift, it must be > 0
-  *
-  * \note This function supports only float and double scalar types. To support other scalar types, the user has
-  * to provide implementations of zeta(T,T) for any scalar type T to be supported.
-  *
-  * \sa ArrayBase::zeta()
-  */
-template<typename DerivedX,typename DerivedQ>
-EIGEN_STRONG_INLINE const Eigen::CwiseBinaryOp<Eigen::internal::scalar_zeta_op<typename DerivedX::Scalar>, const DerivedX, const DerivedQ>
-zeta(const Eigen::ArrayBase<DerivedX>& x, const Eigen::ArrayBase<DerivedQ>& q)
-{
-  return Eigen::CwiseBinaryOp<Eigen::internal::scalar_zeta_op<typename DerivedX::Scalar>, const DerivedX, const DerivedQ>(
-    x.derived(),
-    q.derived()
-  );
-}
-
-
-} // end namespace Eigen
-
-#endif // EIGEN_SPECIALFUNCTIONS_ARRAYAPI_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h

@@ -1,58 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SPECIALFUNCTIONS_BFLOAT16_H
-#define EIGEN_SPECIALFUNCTIONS_BFLOAT16_H
-
-namespace Eigen {
-namespace numext {
-
-#if EIGEN_HAS_C99_MATH
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 lgamma(const Eigen::bfloat16& a) {
-  return Eigen::bfloat16(Eigen::numext::lgamma(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 digamma(const Eigen::bfloat16& a) {
-  return Eigen::bfloat16(Eigen::numext::digamma(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 zeta(const Eigen::bfloat16& x, const Eigen::bfloat16& q) {
-  return Eigen::bfloat16(Eigen::numext::zeta(static_cast<float>(x), static_cast<float>(q)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 polygamma(const Eigen::bfloat16& n, const Eigen::bfloat16& x) {
-  return Eigen::bfloat16(Eigen::numext::polygamma(static_cast<float>(n), static_cast<float>(x)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 erf(const Eigen::bfloat16& a) {
-  return Eigen::bfloat16(Eigen::numext::erf(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 erfc(const Eigen::bfloat16& a) {
-  return Eigen::bfloat16(Eigen::numext::erfc(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 ndtri(const Eigen::bfloat16& a) {
-  return Eigen::bfloat16(Eigen::numext::ndtri(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 igamma(const Eigen::bfloat16& a, const Eigen::bfloat16& x) {
-  return Eigen::bfloat16(Eigen::numext::igamma(static_cast<float>(a), static_cast<float>(x)));
-}
-template <>
-EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 igamma_der_a(const Eigen::bfloat16& a, const Eigen::bfloat16& x) {
-  return Eigen::bfloat16(Eigen::numext::igamma_der_a(static_cast<float>(a), static_cast<float>(x)));
-}
-template <>
-EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 gamma_sample_der_alpha(const Eigen::bfloat16& alpha, const Eigen::bfloat16& sample) {
-  return Eigen::bfloat16(Eigen::numext::gamma_sample_der_alpha(static_cast<float>(alpha), static_cast<float>(sample)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 igammac(const Eigen::bfloat16& a, const Eigen::bfloat16& x) {
-  return Eigen::bfloat16(Eigen::numext::igammac(static_cast<float>(a), static_cast<float>(x)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::bfloat16 betainc(const Eigen::bfloat16& a, const Eigen::bfloat16& b, const Eigen::bfloat16& x) {
-  return Eigen::bfloat16(Eigen::numext::betainc(static_cast<float>(a), static_cast<float>(b), static_cast<float>(x)));
-}
-#endif
-
-}  // end namespace numext
-}  // end namespace Eigen
-
-#endif  // EIGEN_SPECIALFUNCTIONS_BFLOAT16_H