sequenzo 0.1.18__cp311-cp311-macosx_10_9_universal2.whl → 0.1.19__cp311-cp311-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (357) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-311-darwin.so +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/hierarchical_clustering.py +107 -5
  6. sequenzo/define_sequence_data.py +10 -1
  7. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  8. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  9. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-311-darwin.so +0 -0
  10. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  11. sequenzo/dissimilarity_measures/utils/seqconc.cpython-311-darwin.so +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  13. sequenzo/dissimilarity_measures/utils/seqdss.cpython-311-darwin.so +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  15. sequenzo/dissimilarity_measures/utils/seqdur.cpython-311-darwin.so +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  17. sequenzo/dissimilarity_measures/utils/seqlength.cpython-311-darwin.so +0 -0
  18. sequenzo/multidomain/cat.py +0 -53
  19. sequenzo/multidomain/idcd.py +0 -1
  20. sequenzo/openmp_setup.py +233 -0
  21. sequenzo/visualization/plot_transition_matrix.py +21 -22
  22. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  23. sequenzo-0.1.19.dist-info/RECORD +215 -0
  24. sequenzo/dissimilarity_measures/setup.py +0 -35
  25. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  26. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  167. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  168. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  169. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  170. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  171. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  172. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  173. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  174. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  175. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  176. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  177. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  178. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  179. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  180. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  181. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  182. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  183. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  184. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  185. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  186. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  187. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  188. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  189. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  190. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  191. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  192. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  193. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  194. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  195. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  196. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  197. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  198. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  199. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  200. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  201. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  202. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  203. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  204. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  205. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  206. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  207. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  208. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  209. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  210. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  211. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  212. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  213. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  214. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  215. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  216. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  217. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  218. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  219. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  220. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  221. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  222. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  223. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  354. sequenzo-0.1.18.dist-info/RECORD +0 -544
  355. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  356. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  357. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,708 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_PADDING_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_PADDING_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorPadding
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor padding class.
19
- * At the moment only padding with a constant value is supported.
20
- *
21
- */
22
- namespace internal {
23
- template<typename PaddingDimensions, typename XprType>
24
- struct traits<TensorPaddingOp<PaddingDimensions, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = XprTraits::NumDimensions;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename PaddingDimensions, typename XprType>
38
- struct eval<TensorPaddingOp<PaddingDimensions, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorPaddingOp<PaddingDimensions, XprType>& type;
41
- };
42
-
43
- template<typename PaddingDimensions, typename XprType>
44
- struct nested<TensorPaddingOp<PaddingDimensions, XprType>, 1, typename eval<TensorPaddingOp<PaddingDimensions, XprType> >::type>
45
- {
46
- typedef TensorPaddingOp<PaddingDimensions, XprType> type;
47
- };
48
-
49
- } // end namespace internal
50
-
51
-
52
-
53
- template<typename PaddingDimensions, typename XprType>
54
- class TensorPaddingOp : public TensorBase<TensorPaddingOp<PaddingDimensions, XprType>, ReadOnlyAccessors>
55
- {
56
- public:
57
- typedef typename Eigen::internal::traits<TensorPaddingOp>::Scalar Scalar;
58
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
59
- typedef typename XprType::CoeffReturnType CoeffReturnType;
60
- typedef typename Eigen::internal::nested<TensorPaddingOp>::type Nested;
61
- typedef typename Eigen::internal::traits<TensorPaddingOp>::StorageKind StorageKind;
62
- typedef typename Eigen::internal::traits<TensorPaddingOp>::Index Index;
63
-
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorPaddingOp(const XprType& expr, const PaddingDimensions& padding_dims, const Scalar padding_value)
65
- : m_xpr(expr), m_padding_dims(padding_dims), m_padding_value(padding_value) {}
66
-
67
- EIGEN_DEVICE_FUNC
68
- const PaddingDimensions& padding() const { return m_padding_dims; }
69
- EIGEN_DEVICE_FUNC
70
- Scalar padding_value() const { return m_padding_value; }
71
-
72
- EIGEN_DEVICE_FUNC
73
- const typename internal::remove_all<typename XprType::Nested>::type&
74
- expression() const { return m_xpr; }
75
-
76
- protected:
77
- typename XprType::Nested m_xpr;
78
- const PaddingDimensions m_padding_dims;
79
- const Scalar m_padding_value;
80
- };
81
-
82
-
83
- // Eval as rvalue
84
- template<typename PaddingDimensions, typename ArgType, typename Device>
85
- struct TensorEvaluator<const TensorPaddingOp<PaddingDimensions, ArgType>, Device>
86
- {
87
- typedef TensorPaddingOp<PaddingDimensions, ArgType> XprType;
88
- typedef typename XprType::Index Index;
89
- static const int NumDims = internal::array_size<PaddingDimensions>::value;
90
- typedef DSizes<Index, NumDims> Dimensions;
91
- typedef typename XprType::Scalar Scalar;
92
- typedef typename XprType::CoeffReturnType CoeffReturnType;
93
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
94
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
95
- typedef StorageMemory<CoeffReturnType, Device> Storage;
96
- typedef typename Storage::Type EvaluatorPointerType;
97
-
98
- enum {
99
- IsAligned = true,
100
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
101
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess,
102
- PreferBlockAccess = true,
103
- Layout = TensorEvaluator<ArgType, Device>::Layout,
104
- CoordAccess = true,
105
- RawAccess = false
106
- };
107
-
108
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
109
-
110
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
111
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
112
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
113
-
114
- typedef typename internal::TensorMaterializedBlock<ScalarNoConst, NumDims,
115
- Layout, Index>
116
- TensorBlock;
117
- //===--------------------------------------------------------------------===//
118
-
119
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
120
- : m_impl(op.expression(), device), m_padding(op.padding()), m_paddingValue(op.padding_value()), m_device(device)
121
- {
122
- // The padding op doesn't change the rank of the tensor. Directly padding a scalar would lead
123
- // to a vector, which doesn't make sense. Instead one should reshape the scalar into a vector
124
- // of 1 element first and then pad.
125
- EIGEN_STATIC_ASSERT((NumDims > 0), YOU_MADE_A_PROGRAMMING_MISTAKE);
126
-
127
- // Compute dimensions
128
- m_dimensions = m_impl.dimensions();
129
- for (int i = 0; i < NumDims; ++i) {
130
- m_dimensions[i] += m_padding[i].first + m_padding[i].second;
131
- }
132
- const typename TensorEvaluator<ArgType, Device>::Dimensions& input_dims = m_impl.dimensions();
133
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
134
- m_inputStrides[0] = 1;
135
- m_outputStrides[0] = 1;
136
- for (int i = 1; i < NumDims; ++i) {
137
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
138
- m_outputStrides[i] = m_outputStrides[i-1] * m_dimensions[i-1];
139
- }
140
- m_outputStrides[NumDims] = m_outputStrides[NumDims-1] * m_dimensions[NumDims-1];
141
- } else {
142
- m_inputStrides[NumDims - 1] = 1;
143
- m_outputStrides[NumDims] = 1;
144
- for (int i = NumDims - 2; i >= 0; --i) {
145
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
146
- m_outputStrides[i+1] = m_outputStrides[i+2] * m_dimensions[i+1];
147
- }
148
- m_outputStrides[0] = m_outputStrides[1] * m_dimensions[0];
149
- }
150
- }
151
-
152
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
153
-
154
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
155
- m_impl.evalSubExprsIfNeeded(NULL);
156
- return true;
157
- }
158
-
159
- #ifdef EIGEN_USE_THREADS
160
- template <typename EvalSubExprsCallback>
161
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
162
- EvaluatorPointerType, EvalSubExprsCallback done) {
163
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
164
- }
165
- #endif // EIGEN_USE_THREADS
166
-
167
- EIGEN_STRONG_INLINE void cleanup() {
168
- m_impl.cleanup();
169
- }
170
-
171
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
172
- {
173
- eigen_assert(index < dimensions().TotalSize());
174
- Index inputIndex = 0;
175
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
176
- EIGEN_UNROLL_LOOP
177
- for (int i = NumDims - 1; i > 0; --i) {
178
- const Index idx = index / m_outputStrides[i];
179
- if (isPaddingAtIndexForDim(idx, i)) {
180
- return m_paddingValue;
181
- }
182
- inputIndex += (idx - m_padding[i].first) * m_inputStrides[i];
183
- index -= idx * m_outputStrides[i];
184
- }
185
- if (isPaddingAtIndexForDim(index, 0)) {
186
- return m_paddingValue;
187
- }
188
- inputIndex += (index - m_padding[0].first);
189
- } else {
190
- EIGEN_UNROLL_LOOP
191
- for (int i = 0; i < NumDims - 1; ++i) {
192
- const Index idx = index / m_outputStrides[i+1];
193
- if (isPaddingAtIndexForDim(idx, i)) {
194
- return m_paddingValue;
195
- }
196
- inputIndex += (idx - m_padding[i].first) * m_inputStrides[i];
197
- index -= idx * m_outputStrides[i+1];
198
- }
199
- if (isPaddingAtIndexForDim(index, NumDims-1)) {
200
- return m_paddingValue;
201
- }
202
- inputIndex += (index - m_padding[NumDims-1].first);
203
- }
204
- return m_impl.coeff(inputIndex);
205
- }
206
-
207
- template<int LoadMode>
208
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
209
- {
210
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
211
- return packetColMajor(index);
212
- }
213
- return packetRowMajor(index);
214
- }
215
-
216
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
217
- TensorOpCost cost = m_impl.costPerCoeff(vectorized);
218
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
219
- EIGEN_UNROLL_LOOP
220
- for (int i = 0; i < NumDims; ++i)
221
- updateCostPerDimension(cost, i, i == 0);
222
- } else {
223
- EIGEN_UNROLL_LOOP
224
- for (int i = NumDims - 1; i >= 0; --i)
225
- updateCostPerDimension(cost, i, i == NumDims - 1);
226
- }
227
- return cost;
228
- }
229
-
230
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
231
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
232
- const size_t target_size = m_device.lastLevelCacheSize();
233
- return internal::TensorBlockResourceRequirements::merge(
234
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size),
235
- m_impl.getResourceRequirements());
236
- }
237
-
238
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
239
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
240
- bool /*root_of_expr_ast*/ = false) const {
241
- // If one of the dimensions is zero, return empty block view.
242
- if (desc.size() == 0) {
243
- return TensorBlock(internal::TensorBlockKind::kView, NULL,
244
- desc.dimensions());
245
- }
246
-
247
- static const bool IsColMajor = Layout == static_cast<int>(ColMajor);
248
- const int inner_dim_idx = IsColMajor ? 0 : NumDims - 1;
249
-
250
- Index offset = desc.offset();
251
-
252
- // Compute offsets in the output tensor corresponding to the desc.offset().
253
- DSizes<Index, NumDims> output_offsets;
254
- for (int i = NumDims - 1; i > 0; --i) {
255
- const int dim = IsColMajor ? i : NumDims - i - 1;
256
- const int stride_dim = IsColMajor ? dim : dim + 1;
257
- output_offsets[dim] = offset / m_outputStrides[stride_dim];
258
- offset -= output_offsets[dim] * m_outputStrides[stride_dim];
259
- }
260
- output_offsets[inner_dim_idx] = offset;
261
-
262
- // Offsets in the input corresponding to output offsets.
263
- DSizes<Index, NumDims> input_offsets = output_offsets;
264
- for (int i = 0; i < NumDims; ++i) {
265
- const int dim = IsColMajor ? i : NumDims - i - 1;
266
- input_offsets[dim] = input_offsets[dim] - m_padding[dim].first;
267
- }
268
-
269
- // Compute offset in the input buffer (at this point it might be illegal and
270
- // point outside of the input buffer, because we don't check for negative
271
- // offsets, it will be autocorrected in the block iteration loop below).
272
- Index input_offset = 0;
273
- for (int i = 0; i < NumDims; ++i) {
274
- const int dim = IsColMajor ? i : NumDims - i - 1;
275
- input_offset += input_offsets[dim] * m_inputStrides[dim];
276
- }
277
-
278
- // Destination buffer and scratch buffer both indexed from 0 and have the
279
- // same dimensions as the requested block (for destination buffer this
280
- // property is guaranteed by `desc.destination()`).
281
- Index output_offset = 0;
282
- const DSizes<Index, NumDims> output_strides =
283
- internal::strides<Layout>(desc.dimensions());
284
-
285
- // NOTE(ezhulenev): We initialize bock iteration state for `NumDims - 1`
286
- // dimensions, skipping innermost dimension. In theory it should be possible
287
- // to squeeze matching innermost dimensions, however in practice that did
288
- // not show any improvements in benchmarks. Also in practice first outer
289
- // dimension usually has padding, and will prevent squeezing.
290
-
291
- // Initialize output block iterator state. Dimension in this array are
292
- // always in inner_most -> outer_most order (col major layout).
293
- array<BlockIteratorState, NumDims - 1> it;
294
- for (int i = 0; i < NumDims - 1; ++i) {
295
- const int dim = IsColMajor ? i + 1 : NumDims - i - 2;
296
- it[i].count = 0;
297
- it[i].size = desc.dimension(dim);
298
-
299
- it[i].input_stride = m_inputStrides[dim];
300
- it[i].input_span = it[i].input_stride * (it[i].size - 1);
301
-
302
- it[i].output_stride = output_strides[dim];
303
- it[i].output_span = it[i].output_stride * (it[i].size - 1);
304
- }
305
-
306
- const Index input_inner_dim_size =
307
- static_cast<Index>(m_impl.dimensions()[inner_dim_idx]);
308
-
309
- // Total output size.
310
- const Index output_size = desc.size();
311
-
312
- // We will fill inner dimension of this size in the output. It might be
313
- // larger than the inner dimension in the input, so we might have to pad
314
- // before/after we copy values from the input inner dimension.
315
- const Index output_inner_dim_size = desc.dimension(inner_dim_idx);
316
-
317
- // How many values to fill with padding BEFORE reading from the input inner
318
- // dimension.
319
- const Index output_inner_pad_before_size =
320
- input_offsets[inner_dim_idx] < 0
321
- ? numext::mini(numext::abs(input_offsets[inner_dim_idx]),
322
- output_inner_dim_size)
323
- : 0;
324
-
325
- // How many values we can actually copy from the input inner dimension.
326
- const Index output_inner_copy_size = numext::mini(
327
- // Want to copy from input.
328
- (output_inner_dim_size - output_inner_pad_before_size),
329
- // Can copy from input.
330
- numext::maxi(input_inner_dim_size - (input_offsets[inner_dim_idx] +
331
- output_inner_pad_before_size),
332
- Index(0)));
333
-
334
- eigen_assert(output_inner_copy_size >= 0);
335
-
336
- // How many values to fill with padding AFTER reading from the input inner
337
- // dimension.
338
- const Index output_inner_pad_after_size =
339
- (output_inner_dim_size - output_inner_copy_size -
340
- output_inner_pad_before_size);
341
-
342
- // Sanity check, sum of all sizes must be equal to the output size.
343
- eigen_assert(output_inner_dim_size ==
344
- (output_inner_pad_before_size + output_inner_copy_size +
345
- output_inner_pad_after_size));
346
-
347
- // Keep track of current coordinates and padding in the output.
348
- DSizes<Index, NumDims> output_coord = output_offsets;
349
- DSizes<Index, NumDims> output_padded;
350
- for (int i = 0; i < NumDims; ++i) {
351
- const int dim = IsColMajor ? i : NumDims - i - 1;
352
- output_padded[dim] = isPaddingAtIndexForDim(output_coord[dim], dim);
353
- }
354
-
355
- typedef internal::StridedLinearBufferCopy<ScalarNoConst, Index> LinCopy;
356
-
357
- // Prepare storage for the materialized padding result.
358
- const typename TensorBlock::Storage block_storage =
359
- TensorBlock::prepareStorage(desc, scratch);
360
-
361
- // TODO(ezhulenev): Squeeze multiple non-padded inner dimensions into a
362
- // single logical inner dimension.
363
-
364
- // When possible we squeeze writes for the innermost (only if non-padded)
365
- // dimension with the first padded dimension. This allows to reduce the
366
- // number of calls to LinCopy and better utilize vector instructions.
367
- const bool squeeze_writes =
368
- NumDims > 1 &&
369
- // inner dimension is not padded
370
- (input_inner_dim_size == m_dimensions[inner_dim_idx]) &&
371
- // and equal to the block inner dimension
372
- (input_inner_dim_size == output_inner_dim_size);
373
-
374
- const int squeeze_dim = IsColMajor ? inner_dim_idx + 1 : inner_dim_idx - 1;
375
-
376
- // Maximum coordinate on a squeeze dimension that we can write to.
377
- const Index squeeze_max_coord =
378
- squeeze_writes ? numext::mini(
379
- // max non-padded element in the input
380
- static_cast<Index>(m_dimensions[squeeze_dim] -
381
- m_padding[squeeze_dim].second),
382
- // max element in the output buffer
383
- static_cast<Index>(output_offsets[squeeze_dim] +
384
- desc.dimension(squeeze_dim)))
385
- : static_cast<Index>(0);
386
-
387
- // Iterate copying data from `m_impl.data()` to the output buffer.
388
- for (Index size = 0; size < output_size;) {
389
- // Detect if we are in the padded region (exclude innermost dimension).
390
- bool is_padded = false;
391
- for (int j = 1; j < NumDims; ++j) {
392
- const int dim = IsColMajor ? j : NumDims - j - 1;
393
- is_padded = output_padded[dim];
394
- if (is_padded) break;
395
- }
396
-
397
- if (is_padded) {
398
- // Fill single innermost dimension with padding value.
399
- size += output_inner_dim_size;
400
-
401
- LinCopy::template Run<LinCopy::Kind::FillLinear>(
402
- typename LinCopy::Dst(output_offset, 1, block_storage.data()),
403
- typename LinCopy::Src(0, 0, &m_paddingValue),
404
- output_inner_dim_size);
405
-
406
-
407
- } else if (squeeze_writes) {
408
- // Squeeze multiple reads from innermost dimensions.
409
- const Index squeeze_num = squeeze_max_coord - output_coord[squeeze_dim];
410
- size += output_inner_dim_size * squeeze_num;
411
-
412
- // Copy `squeeze_num` inner dimensions from input to output.
413
- LinCopy::template Run<LinCopy::Kind::Linear>(
414
- typename LinCopy::Dst(output_offset, 1, block_storage.data()),
415
- typename LinCopy::Src(input_offset, 1, m_impl.data()),
416
- output_inner_dim_size * squeeze_num);
417
-
418
- // Update iteration state for only `squeeze_num - 1` processed inner
419
- // dimensions, because we have another iteration state update at the end
420
- // of the loop that will update iteration state for the last inner
421
- // processed dimension.
422
- it[0].count += (squeeze_num - 1);
423
- input_offset += it[0].input_stride * (squeeze_num - 1);
424
- output_offset += it[0].output_stride * (squeeze_num - 1);
425
- output_coord[squeeze_dim] += (squeeze_num - 1);
426
-
427
- } else {
428
- // Single read from innermost dimension.
429
- size += output_inner_dim_size;
430
-
431
- { // Fill with padding before copying from input inner dimension.
432
- const Index out = output_offset;
433
-
434
- LinCopy::template Run<LinCopy::Kind::FillLinear>(
435
- typename LinCopy::Dst(out, 1, block_storage.data()),
436
- typename LinCopy::Src(0, 0, &m_paddingValue),
437
- output_inner_pad_before_size);
438
- }
439
-
440
- { // Copy data from input inner dimension.
441
- const Index out = output_offset + output_inner_pad_before_size;
442
- const Index in = input_offset + output_inner_pad_before_size;
443
-
444
- eigen_assert(output_inner_copy_size == 0 || m_impl.data() != NULL);
445
-
446
- LinCopy::template Run<LinCopy::Kind::Linear>(
447
- typename LinCopy::Dst(out, 1, block_storage.data()),
448
- typename LinCopy::Src(in, 1, m_impl.data()),
449
- output_inner_copy_size);
450
- }
451
-
452
- { // Fill with padding after copying from input inner dimension.
453
- const Index out = output_offset + output_inner_pad_before_size +
454
- output_inner_copy_size;
455
-
456
- LinCopy::template Run<LinCopy::Kind::FillLinear>(
457
- typename LinCopy::Dst(out, 1, block_storage.data()),
458
- typename LinCopy::Src(0, 0, &m_paddingValue),
459
- output_inner_pad_after_size);
460
- }
461
- }
462
-
463
- for (int j = 0; j < NumDims - 1; ++j) {
464
- const int dim = IsColMajor ? j + 1 : NumDims - j - 2;
465
-
466
- if (++it[j].count < it[j].size) {
467
- input_offset += it[j].input_stride;
468
- output_offset += it[j].output_stride;
469
- output_coord[dim] += 1;
470
- output_padded[dim] = isPaddingAtIndexForDim(output_coord[dim], dim);
471
- break;
472
- }
473
- it[j].count = 0;
474
- input_offset -= it[j].input_span;
475
- output_offset -= it[j].output_span;
476
- output_coord[dim] -= it[j].size - 1;
477
- output_padded[dim] = isPaddingAtIndexForDim(output_coord[dim], dim);
478
- }
479
- }
480
-
481
- return block_storage.AsTensorMaterializedBlock();
482
- }
483
-
484
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE EvaluatorPointerType data() const { return NULL; }
485
-
486
- #ifdef EIGEN_USE_SYCL
487
- // binding placeholder accessors to a command group handler for SYCL
488
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
489
- m_impl.bind(cgh);
490
- }
491
- #endif
492
-
493
- private:
494
- struct BlockIteratorState {
495
- BlockIteratorState()
496
- : count(0),
497
- size(0),
498
- input_stride(0),
499
- input_span(0),
500
- output_stride(0),
501
- output_span(0) {}
502
-
503
- Index count;
504
- Index size;
505
- Index input_stride;
506
- Index input_span;
507
- Index output_stride;
508
- Index output_span;
509
- };
510
-
511
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool isPaddingAtIndexForDim(
512
- Index index, int dim_index) const {
513
- #if defined(EIGEN_HAS_INDEX_LIST)
514
- return (!internal::index_pair_first_statically_eq<PaddingDimensions>(dim_index, 0) &&
515
- index < m_padding[dim_index].first) ||
516
- (!internal::index_pair_second_statically_eq<PaddingDimensions>(dim_index, 0) &&
517
- index >= m_dimensions[dim_index] - m_padding[dim_index].second);
518
- #else
519
- return (index < m_padding[dim_index].first) ||
520
- (index >= m_dimensions[dim_index] - m_padding[dim_index].second);
521
- #endif
522
- }
523
-
524
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool isLeftPaddingCompileTimeZero(
525
- int dim_index) const {
526
- #if defined(EIGEN_HAS_INDEX_LIST)
527
- return internal::index_pair_first_statically_eq<PaddingDimensions>(dim_index, 0);
528
- #else
529
- EIGEN_UNUSED_VARIABLE(dim_index);
530
- return false;
531
- #endif
532
- }
533
-
534
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool isRightPaddingCompileTimeZero(
535
- int dim_index) const {
536
- #if defined(EIGEN_HAS_INDEX_LIST)
537
- return internal::index_pair_second_statically_eq<PaddingDimensions>(dim_index, 0);
538
- #else
539
- EIGEN_UNUSED_VARIABLE(dim_index);
540
- return false;
541
- #endif
542
- }
543
-
544
-
545
- void updateCostPerDimension(TensorOpCost& cost, int i, bool first) const {
546
- const double in = static_cast<double>(m_impl.dimensions()[i]);
547
- const double out = in + m_padding[i].first + m_padding[i].second;
548
- if (out == 0)
549
- return;
550
- const double reduction = in / out;
551
- cost *= reduction;
552
- if (first) {
553
- cost += TensorOpCost(0, 0, 2 * TensorOpCost::AddCost<Index>() +
554
- reduction * (1 * TensorOpCost::AddCost<Index>()));
555
- } else {
556
- cost += TensorOpCost(0, 0, 2 * TensorOpCost::AddCost<Index>() +
557
- 2 * TensorOpCost::MulCost<Index>() +
558
- reduction * (2 * TensorOpCost::MulCost<Index>() +
559
- 1 * TensorOpCost::DivCost<Index>()));
560
- }
561
- }
562
-
563
- protected:
564
-
565
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetColMajor(Index index) const
566
- {
567
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
568
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
569
-
570
- const Index initialIndex = index;
571
- Index inputIndex = 0;
572
- EIGEN_UNROLL_LOOP
573
- for (int i = NumDims - 1; i > 0; --i) {
574
- const Index firstIdx = index;
575
- const Index lastIdx = index + PacketSize - 1;
576
- const Index lastPaddedLeft = m_padding[i].first * m_outputStrides[i];
577
- const Index firstPaddedRight = (m_dimensions[i] - m_padding[i].second) * m_outputStrides[i];
578
- const Index lastPaddedRight = m_outputStrides[i+1];
579
-
580
- if (!isLeftPaddingCompileTimeZero(i) && lastIdx < lastPaddedLeft) {
581
- // all the coefficient are in the padding zone.
582
- return internal::pset1<PacketReturnType>(m_paddingValue);
583
- }
584
- else if (!isRightPaddingCompileTimeZero(i) && firstIdx >= firstPaddedRight && lastIdx < lastPaddedRight) {
585
- // all the coefficient are in the padding zone.
586
- return internal::pset1<PacketReturnType>(m_paddingValue);
587
- }
588
- else if ((isLeftPaddingCompileTimeZero(i) && isRightPaddingCompileTimeZero(i)) || (firstIdx >= lastPaddedLeft && lastIdx < firstPaddedRight)) {
589
- // all the coefficient are between the 2 padding zones.
590
- const Index idx = index / m_outputStrides[i];
591
- inputIndex += (idx - m_padding[i].first) * m_inputStrides[i];
592
- index -= idx * m_outputStrides[i];
593
- }
594
- else {
595
- // Every other case
596
- return packetWithPossibleZero(initialIndex);
597
- }
598
- }
599
-
600
- const Index lastIdx = index + PacketSize - 1;
601
- const Index firstIdx = index;
602
- const Index lastPaddedLeft = m_padding[0].first;
603
- const Index firstPaddedRight = (m_dimensions[0] - m_padding[0].second);
604
- const Index lastPaddedRight = m_outputStrides[1];
605
-
606
- if (!isLeftPaddingCompileTimeZero(0) && lastIdx < lastPaddedLeft) {
607
- // all the coefficient are in the padding zone.
608
- return internal::pset1<PacketReturnType>(m_paddingValue);
609
- }
610
- else if (!isRightPaddingCompileTimeZero(0) && firstIdx >= firstPaddedRight && lastIdx < lastPaddedRight) {
611
- // all the coefficient are in the padding zone.
612
- return internal::pset1<PacketReturnType>(m_paddingValue);
613
- }
614
- else if ((isLeftPaddingCompileTimeZero(0) && isRightPaddingCompileTimeZero(0)) || (firstIdx >= lastPaddedLeft && lastIdx < firstPaddedRight)) {
615
- // all the coefficient are between the 2 padding zones.
616
- inputIndex += (index - m_padding[0].first);
617
- return m_impl.template packet<Unaligned>(inputIndex);
618
- }
619
- // Every other case
620
- return packetWithPossibleZero(initialIndex);
621
- }
622
-
623
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetRowMajor(Index index) const
624
- {
625
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
626
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
627
-
628
- const Index initialIndex = index;
629
- Index inputIndex = 0;
630
- EIGEN_UNROLL_LOOP
631
- for (int i = 0; i < NumDims - 1; ++i) {
632
- const Index firstIdx = index;
633
- const Index lastIdx = index + PacketSize - 1;
634
- const Index lastPaddedLeft = m_padding[i].first * m_outputStrides[i+1];
635
- const Index firstPaddedRight = (m_dimensions[i] - m_padding[i].second) * m_outputStrides[i+1];
636
- const Index lastPaddedRight = m_outputStrides[i];
637
-
638
- if (!isLeftPaddingCompileTimeZero(i) && lastIdx < lastPaddedLeft) {
639
- // all the coefficient are in the padding zone.
640
- return internal::pset1<PacketReturnType>(m_paddingValue);
641
- }
642
- else if (!isRightPaddingCompileTimeZero(i) && firstIdx >= firstPaddedRight && lastIdx < lastPaddedRight) {
643
- // all the coefficient are in the padding zone.
644
- return internal::pset1<PacketReturnType>(m_paddingValue);
645
- }
646
- else if ((isLeftPaddingCompileTimeZero(i) && isRightPaddingCompileTimeZero(i)) || (firstIdx >= lastPaddedLeft && lastIdx < firstPaddedRight)) {
647
- // all the coefficient are between the 2 padding zones.
648
- const Index idx = index / m_outputStrides[i+1];
649
- inputIndex += (idx - m_padding[i].first) * m_inputStrides[i];
650
- index -= idx * m_outputStrides[i+1];
651
- }
652
- else {
653
- // Every other case
654
- return packetWithPossibleZero(initialIndex);
655
- }
656
- }
657
-
658
- const Index lastIdx = index + PacketSize - 1;
659
- const Index firstIdx = index;
660
- const Index lastPaddedLeft = m_padding[NumDims-1].first;
661
- const Index firstPaddedRight = (m_dimensions[NumDims-1] - m_padding[NumDims-1].second);
662
- const Index lastPaddedRight = m_outputStrides[NumDims-1];
663
-
664
- if (!isLeftPaddingCompileTimeZero(NumDims-1) && lastIdx < lastPaddedLeft) {
665
- // all the coefficient are in the padding zone.
666
- return internal::pset1<PacketReturnType>(m_paddingValue);
667
- }
668
- else if (!isRightPaddingCompileTimeZero(NumDims-1) && firstIdx >= firstPaddedRight && lastIdx < lastPaddedRight) {
669
- // all the coefficient are in the padding zone.
670
- return internal::pset1<PacketReturnType>(m_paddingValue);
671
- }
672
- else if ((isLeftPaddingCompileTimeZero(NumDims-1) && isRightPaddingCompileTimeZero(NumDims-1)) || (firstIdx >= lastPaddedLeft && lastIdx < firstPaddedRight)) {
673
- // all the coefficient are between the 2 padding zones.
674
- inputIndex += (index - m_padding[NumDims-1].first);
675
- return m_impl.template packet<Unaligned>(inputIndex);
676
- }
677
- // Every other case
678
- return packetWithPossibleZero(initialIndex);
679
- }
680
-
681
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetWithPossibleZero(Index index) const
682
- {
683
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
684
- EIGEN_UNROLL_LOOP
685
- for (int i = 0; i < PacketSize; ++i) {
686
- values[i] = coeff(index+i);
687
- }
688
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
689
- return rslt;
690
- }
691
-
692
- Dimensions m_dimensions;
693
- array<Index, NumDims+1> m_outputStrides;
694
- array<Index, NumDims> m_inputStrides;
695
- TensorEvaluator<ArgType, Device> m_impl;
696
- PaddingDimensions m_padding;
697
-
698
- Scalar m_paddingValue;
699
-
700
- const Device EIGEN_DEVICE_REF m_device;
701
- };
702
-
703
-
704
-
705
-
706
- } // end namespace Eigen
707
-
708
- #endif // EIGEN_CXX11_TENSOR_TENSOR_PADDING_H