sequenzo 0.1.18__cp311-cp311-macosx_10_9_universal2.whl → 0.1.19__cp311-cp311-macosx_10_9_universal2.whl

sequenzo-0.1.19.dist-info/RECORD

@@ -0,0 +1,215 @@
+sequenzo/__init__.py,sha256=uGmuqHVR8JDseOnN0tHgbly9nRzCeNY7A9OHBusdMP4,6990
+sequenzo/define_sequence_data.py,sha256=xdIekb8nT8dBPyHPpRalIxF44RLYKRXg59Us-tjZu7k,28627
+sequenzo/openmp_setup.py,sha256=f_8SxfcRhdI_uj_2RHFwiEw8iizB35Mv-3UUccRDt6U,7059
+sequenzo/big_data/__init__.py,sha256=iSZnGboYhbvsFf75uL8D8XDucXRxYypmFNN1uX5MxJo,152
+sequenzo/big_data/clara/__init__.py,sha256=pDR5_TSDisEhPtsA2gXGaXXBNTmWidJC_nnd9QMkz-U,700
+sequenzo/big_data/clara/clara.py,sha256=67KaOUrmUxzUJrSe7O3VtW4URIhYZUHe3_QlokQTGds,18824
+sequenzo/big_data/clara/visualization.py,sha256=EpSmtAxRHVqcXlcXvSGiUuBjEETR7zK_gnLZgjlbXB8,3211
+sequenzo/big_data/clara/utils/__init__.py,sha256=2_o1tz8HFZVKFy8w8oJWdWlVKtwGjGY3z4PQylHKjt0,726
+sequenzo/big_data/clara/utils/aggregatecases.py,sha256=ul97pbnRlwxbFbX_0M4j-Bkyxkp7zMAKatSo4eanO24,2899
+sequenzo/big_data/clara/utils/davies_bouldin.py,sha256=4Y6VFjqopG3CaftQ8tDxQPjxxupJ6Hgv-yTXwCvgN7w,3037
+sequenzo/big_data/clara/utils/get_weighted_diss.c,sha256=PMKpIOq6cDMzSdcdH7xXUifceljmFLmKObxAyYsr4FY,465773
+sequenzo/big_data/clara/utils/get_weighted_diss.cpython-311-darwin.so,sha256=Sqcz_zvrTLhMTGJVlMT6TbAsacHftCmacgM3Ol66q_E,104456
+sequenzo/big_data/clara/utils/get_weighted_diss.pyx,sha256=UYR-u8MDQEuWID3inKhSpBsuxu7qTFmEwLrjNPBMmUw,430
+sequenzo/big_data/clara/utils/wfcmdd.py,sha256=-1H6CbTteTW-CeuQ_ehVDhnKH3ozcCkUobxoCSRIpYg,7074
+sequenzo/clustering/KMedoids.py,sha256=asktGP0KKgP4TsOH4bSYEWfE8yY5b9BfKa1d54KzaXI,7147
+sequenzo/clustering/__init__.py,sha256=duEY0Hq0-7Kc_lv0uFDK3D8IEXby-7Z0Rjff0EgO0KM,875
+sequenzo/clustering/clustering_c_code.cpython-311-darwin.so,sha256=jnT6tKdnKPbw6zfmqSkE_PxVyIma2xg_DqOF1pdJHlE,362584
+sequenzo/clustering/hierarchical_clustering.py,sha256=b0ZkWoj9PGPqzVoRUaOIIM6AC-Udi2_Fcgi7AzAWE4c,61590
+sequenzo/clustering/src/KMedoid.cpp,sha256=Bb4LaRes004T9vyCmUknRS0NUaNr4ZoEpWvtkYGq-jw,9299
+sequenzo/clustering/src/PAM.cpp,sha256=UFXdTy1wMWheYa-fUoi8ASQPmn0Ew-AO7fqVQVxn_E8,8357
+sequenzo/clustering/src/PAMonce.cpp,sha256=C9HqGBRenmF2tnQofALjjU1As02dTw2oqEnuvdhoJIk,7943
+sequenzo/clustering/src/cluster_quality.cpp,sha256=Z_QhfW93-J1_JZLck7_UiE7zeQU2EI5kKz55KOpvNxc,18329
+sequenzo/clustering/src/cluster_quality.h,sha256=lg_GY1SRQc6-d9JSo5uLfhAosZhLZFlzhE3Ap71ehyA,4637
+sequenzo/clustering/src/cluster_quality_backup.cpp,sha256=IrDcW6tW8Ys2TlvtJthEA8bdtKUcOtFB9o5XzuXdpao,21471
+sequenzo/clustering/src/module.cpp,sha256=-m6q3IslQfblXcWfKgZvYMG3PyhTqQNcbYtl67Pk8-U,9505
+sequenzo/clustering/src/weightedinertia.cpp,sha256=af9jMNxaL6XgAnfnEIMLQR4imLXqF6i4YS9udpwK3yY,3126
+sequenzo/clustering/utils/__init__.py,sha256=fstr7YC6ILsFXfFsEWbCUWH7S7N8-CTLig93dBpMnbg,700
+sequenzo/clustering/utils/disscenter.py,sha256=QeFX8wiLpmFpGR4HUh27BgkRvA8dfyhR8tDW3xDFgFQ,3553
+sequenzo/data_preprocessing/__init__.py,sha256=Irb7WDs9FxfEXIWVQjV4bM--7QfmBRFgdAqs1R5ISaE,512
+sequenzo/data_preprocessing/helpers.py,sha256=Rlb2wLi9ykqvgk7B_zsxJBOG0YziwkGAXpLpmUAXv1Y,9633
+sequenzo/datasets/__init__.py,sha256=CEivMgWGOG9K2Rc_0WV8CuJ3mwqY2UyBQ8gAoSrkV20,1454
+sequenzo/datasets/biofam.csv,sha256=4m9ar-wnzxKxGn8AmO4ugyIeCu78M4Uf3T9ub9X4klo,360038
+sequenzo/datasets/biofam_child_domain.csv,sha256=uBGD0zaJWkJBv4Muovc8GYL8ciFLC46dvrkZfdJzVAw,73008
+sequenzo/datasets/biofam_left_domain.csv,sha256=Q-KQb-GPfXVNX3wG7wR4vLhe8iJUyRvr20TL5oORmY8,73008
+sequenzo/datasets/biofam_married_domain.csv,sha256=G7Cx07gSzoSfzpcR2k194lzsMIQwPGJg6F8ux8VmyVw,73008
+sequenzo/datasets/chinese_colonial_territories.csv,sha256=CW0gQccqc8uej34P_FXvtg4W4K5FDiGYcwTjDFdQ5KM,7809
+sequenzo/datasets/country_co2_emissions.csv,sha256=jizu1op-iQUpsrZIsGlojdXrYYbOlPJoRlyaFyF9FFc,305365
+sequenzo/datasets/country_co2_emissions_global_deciles.csv,sha256=jDHCKLn8k7qI9UrelMEqWjMYIAmK1AtHm3L8Dix6XSE,245778
+sequenzo/datasets/country_co2_emissions_global_quintiles.csv,sha256=RpOZz2vNPZ_h-hYpbqJy1Hi1mCB1l0i0vZXVXosKRg0,308291
+sequenzo/datasets/country_co2_emissions_local_deciles.csv,sha256=95lE3dqyQ-YN_tbuWQytBZpZZKJaqvLoArSnZ3TMoz0,246644
+sequenzo/datasets/country_co2_emissions_local_quintiles.csv,sha256=fCXqzTl8WuiMfP4ahuRrhlrpMvfW5ms1hbzDAwOPb_4,308488
+sequenzo/datasets/country_gdp_per_capita.csv,sha256=AhpUeTHydq3lW9aks7apKeBwLZXFbnD8PxJ5P2JR6M0,304231
+sequenzo/datasets/mvad.csv,sha256=sT6kvc1xW2vtm8df3l7w7NEJXjUjnj_b5bSMWZIpmNE,580585
+sequenzo/datasets/pairfam_family.csv,sha256=mCJAEiXDa5AsoIpefLsJT4NTq-6TlKggcUZsrkq0UMw,1123728
+sequenzo/datasets/polyadic_samplec1.csv,sha256=dlA36cW6SMcaiHBzSCKsn9ornPqMQr5YX9ow5LADj10,3640
+sequenzo/datasets/polyadic_samplep1.csv,sha256=-2HvKSmevfqe1rWFVJlbnjousEgJRU_PHJBdqt7gjnY,3665
+sequenzo/datasets/polyadic_seqc1.csv,sha256=ydZ-U8NTszR4lNBN4hhsH_dHfq0w5VZSMM7t9C5Uado,7028
+sequenzo/datasets/polyadic_seqp1.csv,sha256=sydXCR0JBKJlbMxJyGa46cic9XQstUpYFOtHaLmkp_0,7681
+sequenzo/dissimilarity_measures/__init__.py,sha256=qkWAQ1sBpS2aayO-FSA8Zha7rQ_vjs0_KIHEB60bVg4,958
+sequenzo/dissimilarity_measures/c_code.cpython-311-darwin.so,sha256=092pVf8tc-_g7TJQl-StHHtV8VRUHeZVNzJLxmesLzI,345824
+sequenzo/dissimilarity_measures/get_distance_matrix.py,sha256=6C8x06IDZ3wZeEr-JN-Sce5rxMQLXXoyJNrlsQXn8Pk,29903
+sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py,sha256=A2ohhpJw-dznmjfsjctVnO5BOzajRBm3Ffj-oPYEvJ4,9551
+sequenzo/dissimilarity_measures/src/DHDdistance.cpp,sha256=RbWbSaELxlJiw5ST_JaD-wPx_sD7PGV2VdK4qEhOcxE,4714
+sequenzo/dissimilarity_measures/src/LCPdistance.cpp,sha256=VCqRm_mbI2IOm6KiO7SACHDOpZXBTkDdyr1Fo39zJVE,3231
+sequenzo/dissimilarity_measures/src/OMdistance.cpp,sha256=0HxjF4VFXkCtrV2zV7Kb_URVMWrjgt_W-4ugf1O7cDo,8726
+sequenzo/dissimilarity_measures/src/OMspellDistance.cpp,sha256=EbtrWCTNK5mq5hfTJUwcgD4aUm3VbVCjzIA1J_3wNP0,9877
+sequenzo/dissimilarity_measures/src/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+sequenzo/dissimilarity_measures/src/dist2matrix.cpp,sha256=spUINWdfJyXR3uWaQ66tLPifrZT0VPfylX5SkKdQ3RQ,1759
+sequenzo/dissimilarity_measures/src/dp_utils.h,sha256=mghKkQlXhl3F4dXuO-4INGBkWiYfyxBawVv-PtBCkZw,4466
+sequenzo/dissimilarity_measures/src/module.cpp,sha256=A8SheP33EUcBATXzVcb1W_bqevxYOFoj0yJxdVDLT7M,1729
+sequenzo/dissimilarity_measures/src/setup.py,sha256=HTMiDG0P6sCLdAQBgyp8Jd5iNvQimzvNoTHE4QP0XVs,579
+sequenzo/dissimilarity_measures/src/utils.h,sha256=Hw_VLkhFvoXLFoJ9FsdFMuflnI5Zm6-6gAwspnzA5TI,803
+sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp,sha256=2CGojY-vyRREHQGI6-Wytz1Yq9dk5bLVvlz_FM10TXY,57
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp,sha256=LsMwucFe7RvswPkgXNdSuKbSqUvkRXOYLmq3LWBrrH8,2728
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp,sha256=G3uE_md-Y7asBipzc25gKAIOV4aCrZbnMMzUbjEpw3g,90424
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp,sha256=zQqo2dqAZy2O32juPWtbnAFqkAiUlv5VKHncFpIp6Fc,48668
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp,sha256=IeasuDjPImrarVlp6IbesQgjlIgTt3RzKzDLcvOTcEM,25719
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp,sha256=xBQYj_r0XVrrO5ZeGndBarz5N4kWAYaXWO9kGJmA2sk,979
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp,sha256=BXsaqGeY2m0y2tSxowpBGe9wh05GaOM8NaXho6jrGpY,11306
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp,sha256=0Ry5oiqe9up1h5MIU07qvBP6TpZW2sN9UrqPBh0U2QE,933
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp,sha256=R4XzWQvIlkmjYcP_4h0FrpUbNgAthnkf6DADa1qyi-0,126892
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp,sha256=HO39AdydUnMCg9NDElzZuml9DDHxJYPrHXMODiRrvFw,939
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp,sha256=Df3HEkrfatmU5GEQpdxWpZy3oSbxJqqjL3Lo8OEsDBw,933
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp,sha256=g5HvZjA7tTs8aq2OJnYN1eppX24evxzpOzaAhW_Laeg,3425
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp,sha256=_2LR8AldChNT_1nf7C_1Q4hTYC33pIxO-kbh9aFaUHc,5606
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp,sha256=GKWN2MD1An0VGTSxLCSVEc2WTNxxRE4FBga_khzlEFA,968
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp,sha256=Gs2IqCq_ZgJJjWgqVKOA1EKrICB40sUTWitS1z1cZCQ,975
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp,sha256=b9XOSCmcZcNdWNxs0UUdTEMUpYSCt69Y5wC7Nt2F0sw,930
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp,sha256=X4gfm9-2oz8rY9dacrd2FCPTBaJY1Nb73PjphEjZY_g,1198
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp,sha256=1z6BzrXnkWgrxEMirbKYuUMWoWbfeEP-fCux2pEcpLs,5146
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp,sha256=ozPvnc8vxUqtNrLXa1K05WRULHlP7ZsWZrPXGEEfxws,14121
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp,sha256=gYgWArvPoxf4tXTZ52KKUdq9dP594g5tkBYrP4fq14c,36922
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp,sha256=UHZzvx6Uv2mZTzSgMw8dPsw664q5XEi3jX_0jfChOyw,3564
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp,sha256=cU1qT6VBmLW-LUFiLJIKQQow1QsXHPOYs30RRFSXwCQ,1592
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp,sha256=UG5bvU7vwqryu6USHeGiwLjda9sNzRPzvXo37lqK7Xo,3816
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp,sha256=b8THgymg0NPIjQTcir5i9AvAg-wqsbzPJeYplVIMJm8,3461
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp,sha256=OChPwZc_MGK-9mTOMyLVszuhDKgihN8NhQaeEZCSASo,901
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp,sha256=j3GZ5OK-CSxEkfmr0x7td_Noy4YXGWjumvKGEjQG4T0,2886
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp,sha256=BFYGefKVrYsN-t8qM2Bz26l0SDzKOce1RicwX1-zaew,141079
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp,sha256=YGe3vT-xZ2lNxhTU02_aadOYnK6coVe4J-2HBzJ-a1k,62146
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp,sha256=KKyskeg7Q96G9epwqUxTeXgwfG2OWsg1yq1VlZvrFhA,71057
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp,sha256=uXnw00QSIdAKsKupxUGL7P0GVEyZi9vxPtKmPJiH7Ak,38191
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp,sha256=wXChvyjuc0GGJ2a44Yv9_05C1nufr71LBULX-vvD_ZM,88290
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp,sha256=iIz3YP_trmCipgLrn6F4eLnJLEP6mHpAas4RPQ4DJX0,2447
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp,sha256=OpXAmc-2deMiqa2PBltJ6L2ObDK8HaJPLBsEPNrOFOo,14045
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp,sha256=gK3_yY9vcjyac0LDUFB5-i7jNQraKxC2PwmQtEukD0E,1697
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp,sha256=PdfDhj7N1AQ077UbPpBP-K30rloTSqy7haOSYjHaoe8,8438
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp,sha256=_Qkr110UwsAaEjvO8IKLQcSoEQmh0nVCP_ETcI4kLjw,49170
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp,sha256=ClL2V7IJbjf13s2tnGPauIiVgO3Xr5CV1JH31V0s-VY,40985
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp,sha256=ROKyylLmspeGbBc-1RPserBSNdtcdeVWTV7y7Cv_Zco,75372
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp,sha256=fLlHThTIcJ4uVU1J9Ziw_1w3UEhMUJKRS1BycvOfCUo,12008
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp,sha256=mqcXzs6CSdv9SzfOMLx6qJ5myVvXuwa_y34M8QAkd8w,4070
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp,sha256=_mD-smC8FQRgWofxuuhtjhsUeFWO1fHj9XUVA6wERF8,15802
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp,sha256=RJJy8CsnohK2TlM-B3L_uEuR3aywVjc5_HHnyAQGJTs,8526
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp,sha256=7TDTegY1TC02GEMz6tolupM244dHmnjPPpi1uh17jWI,116975
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp,sha256=XiO9Gmzk-BrCPJHDkDgFD9XYEgVroCDIHk44NlnJcro,41564
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp,sha256=h7MJ6xC3jzjX1Ur9lCutOU8SAZfHRSeFhfDmqoCF8nQ,2772
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp,sha256=mygsN-TfId4EmTLEdUjqE-PjtEiHN5nmS8qBGO6sHs4,9876
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp,sha256=vproKQRWczMTzEqu58exB2ZBnynrnV5IhSs4qn15XhU,45215
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp,sha256=1tYXZvcPoIXq2JQn9zCLssZJxw78ujtCJzIgP_3aLFM,8357
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp,sha256=mLDtLMxrLg_VvE2VLzXgdbZaubB-i8zigxR2xwgYy2Y,10819
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp,sha256=wRwLPkFnMMbT2jNkN3HBzQF6Qem7cqG-btBGsN2eQbc,9243
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp,sha256=G4txGeFYlaJ6eJV7-ZuyfDDGwNK_xixG-yF3QYofuEE,1127
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp,sha256=8HLQvmN5LyevGa5_oHmvh1DpIfcx5vhOyNMEemyusac,25630
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp,sha256=FjurT6RViugW6JYw-dTZ4BGQeeDfoj15fjl8EdG_q44,11463
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp,sha256=daZBsGCBL-dy_z6sNIaJnFMolvYyOn9XNexjKq_vNtQ,2610
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp,sha256=dFsghzwm8dkyfGOlAZalxpsaZ48F8OkJ4-WBQ04oQIM,1978
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp,sha256=BgUmz6rVac01w0MThpdEzAlX7WaLKCJph88hYDSyaVU,94022
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp,sha256=Bv7gezr-leUFuxJwqNw4HN28LuvJ1MjRnfw_IaL5hsA,1441
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp,sha256=I5SuqGKd_eNjPz13FMvPPImFscpX_LKSSYiFZ_QBB7I,1658
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp,sha256=rzJzLBBiU2oykdVnL98u1lM_WVJvkDQNuGRpWos0oUo,1653
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp,sha256=8lmd2J4W4t4tn4R8nv3xBPgB9hrDNjnUAH78Npeidl8,1658
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp,sha256=m0-SPBC2b9v4-gA52vCz_55rU_vgQLrj8MFm6LaXLCc,1658
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp,sha256=p2hWaaAJo6-8LcIHDqtE2a5dC7kfODywRyNUhYcklx4,3142
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp,sha256=jPx7IhjNtfDEELeki2-yfpvUi3EdYMYcHJ65rQ91Yyg,1678
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp,sha256=lkxS9iSkhXrsS3vFH9Tvk_m3A0VWrC4I0dNrgoLs2I8,1658
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp,sha256=KEYtpZ09lh-31FHX6UVslxFB_QKOm4O89A-jHhXF3aI,1697
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp,sha256=rjy7mpleBfOeiIpcAdlpIdVMwCVQD7UfaxzVwMccZVY,1688
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp,sha256=wrJ6jVissOl0UVu0YM_bfjAAd1SGO2pih_YXlAtkPMk,1830
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp,sha256=ip1yV_HIBIQq0oDMYpiJLYC2D--4pvL0jN6cZAaR5xE,1871
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp,sha256=PALy0fEfHn5HzQXrtK06KsnBcbWTjbi3Mjwwfe4jAP4,2403
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp,sha256=y7c7Odk5jYAvPK7Gw_K719kgfS3WiM4BS9ap-2nhx0I,1473
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp,sha256=E3nUHaiHNOzQtAI32u144bE7AQXJRW6ODiFj0rvV-QQ,55252
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp,sha256=EHJK2Wg3mR2qOKrqKXJvLSiWrWmU48zxhaNF3_SrsZ0,11442
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp,sha256=mQ1R_I4sR2tOo6MndNkpK171somx0OwEMl0wfszSdbw,1837
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp,sha256=JHsYwTCOXgxhbKeI4lrdN9Zltzlzgl6-Uw7lGoHCfoM,2958
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp,sha256=V9x1mYldxPK3IxdkLu8v8b_MI7747GSAYV4dAQcuJ4U,1559
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp,sha256=UijF36Y6-1MPNUMUpPIe1P16dkYSbx6BO5JsJL_pR5w,1545
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp,sha256=ss_-mJjqEROo5yA4ZowXzKdqXZv4GI_aJgXaHKwRTDY,1575
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp,sha256=k5RrQs4KzZ3nMWNBdWlVBf1SCamjCoCmULwLougGtIM,1518
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp,sha256=h3UGQYfuq-L8alzBy5Rsicy0kDJ6sXASyJ6C28pg_rY,1754
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp,sha256=dWUugWN9Gxr36Q1msPnfHP0u6EPCqc-VuLKorU_x028,1847
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp,sha256=c6ncY5lAnYamrQI7ezH9Mkm0QfM-3bQoUE1-wKOZmpk,5615
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp,sha256=0nY6CpGYVZSttQiRxXbjasCX3e8gPKDYkGvmxfPBIlQ,4204
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp,sha256=uBJayrwCSnV1_uBR0wAJc5wNNNxWw__axtOdMbNxMCw,24167
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp,sha256=6-HpqxXs-76kNQHXGwEQmT8UUidk7DQiAvr5g9d_TyM,2395
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp,sha256=Dp8_723CrlJYil5Z5PuRzsQMhKH5uH8kA8VdtfputyE,1498
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp,sha256=m_g1DYCdhUlCrXJ2CTusdSIag-BAlnVjqlw8Iyou7lA,1522
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp,sha256=kT8B8i7d43i12F7mHhEg_MnJQY-gkQY85c9tPuoJaHA,1527
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp,sha256=RuJmgxeX0_7MI_6scYdvtIfkbrfy3ora1BPojhuUqSA,1507
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp,sha256=nhyBKiLBSddra8Al0y9jU-tjnkyelnxvB6OhAhk2rAw,6734
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp,sha256=mSacRtj8YS_VoAbFdPsaYr4alCrevMfIm4uiBYIefws,9979
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp,sha256=waxMGI8c9_7hxfoZka-AiJpr4j8zQmVKXPhjx_L9T8U,15882
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp,sha256=bylgPaSUsBwou9cNz1yE2XCTlgz3cGBCs3nYcO0i16g,3450
+sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp,sha256=Am-0VbiA-S1zX2YXxKPgHc4dxWDDHS6_bL2ox5x7aMA,2437
+sequenzo/dissimilarity_measures/utils/__init__.py,sha256=aZMQJGgJq4GsL1x-pQPLmL7KrJ78cHMH46GVmVE8pJ0,407
+sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py,sha256=bJjbEQcjENSAdLv2IMRUWJC4avldwCfHrtSEnlDEACY,1470
+sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c,sha256=_12xYyX_6jYCxAxp-IFZgOZ7QixSw6IM9BJ1jv7blf8,578053
+sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-311-darwin.so,sha256=lRsNdeSCjSYCLpucr_MuOBq3QLBw_P8vnmmWvCC46Lw,145128
+sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx,sha256=pwImh8jgNcbLLb0y1uhYAYNwXP93JPIh-DQ5frVjZUE,3216
+sequenzo/dissimilarity_measures/utils/seqconc.c,sha256=CeI2PCF6q1X1dsxORdiJm0n_T4AGAm9URlu3jpKgkmo,487377
+sequenzo/dissimilarity_measures/utils/seqconc.cpython-311-darwin.so,sha256=tW1qndXxNBNhxEMsil0tJw1xjkyHaoOAPlsmoiOlX98,123616
+sequenzo/dissimilarity_measures/utils/seqconc.pyx,sha256=7X8jv1kXq9o2pCnBNu5X_NZ0aMpWtxhhqnMsUJzqANo,770
+sequenzo/dissimilarity_measures/utils/seqdss.c,sha256=F84dO7RItBhm5lYzfjXpby2Kki1beKK129HKmDd4U34,598973
+sequenzo/dissimilarity_measures/utils/seqdss.cpython-311-darwin.so,sha256=C4KFdPl_zlUgpVCmmxuWjXNUwRBkfmYq5CkTEQkCN28,153136
+sequenzo/dissimilarity_measures/utils/seqdss.pyx,sha256=THl9-bw63NqgXAv9_OhlB6DF92A0moszCoA32XyyA0Q,1232
+sequenzo/dissimilarity_measures/utils/seqdur.c,sha256=ZvyIB6EQm3xojCwAKMpWzmOwAd_lpje9410g7IfPrHg,523279
+sequenzo/dissimilarity_measures/utils/seqdur.cpython-311-darwin.so,sha256=Ca6z8QhiH4R-Gk7kuIrvIS1g48hb_nn2FUVIJmD8JxQ,126144
+sequenzo/dissimilarity_measures/utils/seqdur.pyx,sha256=RyBqjdO8SdiCYg7cScdT6uEWPjYX_e7-KUrlQkRkBC0,1288
+sequenzo/dissimilarity_measures/utils/seqlength.c,sha256=NdJmDfmRq1nSQj71lmAvf9EyeLKHZ2r16zYMY33DKcU,475346
+sequenzo/dissimilarity_measures/utils/seqlength.cpython-311-darwin.so,sha256=ctyMU5q4EXsMZS1_hsyrHpTiqIwNCFLaqwXEVP4qWmk,121984
+sequenzo/dissimilarity_measures/utils/seqlength.pyx,sha256=y-792z6X1L4zychHJj5IQVHOfM5JibQ_ITFnkYHJO3c,564
+sequenzo/multidomain/__init__.py,sha256=bVnbkJXuXj8y5lHreRBQnL1JFcrmlsz2TSt-qFfmWm8,734
+sequenzo/multidomain/association_between_domains.py,sha256=V4I_ILAAwf3cfz2i0HdLF8otAqPtF2LfjcCKo1IkfHA,10855
+sequenzo/multidomain/cat.py,sha256=7QqdEjZSiqDZnXGOWgkOoeRHg0USVAUKPlzXecJeMFQ,18022
+sequenzo/multidomain/combt.py,sha256=aE1OsCE5huJI6VqInBpBjT6WjAIZlgFHFtUwSZt9XLU,22079
+sequenzo/multidomain/dat.py,sha256=OwSSi9AiuWBF4LP_HOi79MRngvRCqe4o-eahWrrKTPw,3155
+sequenzo/multidomain/idcd.py,sha256=EGY__QnS6WEE07zaqWeKaFbFiZPzxALmYV_5shJ6uTA,4588
+sequenzo/multidomain/linked_polyad.py,sha256=2G_WfKt_o_pdqg68bmQis738h76GiBVjHusnUNAys64,13666
+sequenzo/prefix_tree/__init__.py,sha256=YxMzr5UwM22DmpMDMAmKYI-vjhikDI8Gft_cJ9h1gYo,1126
+sequenzo/prefix_tree/individual_level_indicators.py,sha256=9JPINoPU50UGh9-D2QOAr7GQsxAkZ6qDmhKQtVwvZsU,52788
+sequenzo/prefix_tree/system_level_indicators.py,sha256=tGnzRRqwzJbGv-vjOMAzdh6arN6QJkdsybe0Yif57ug,17507
+sequenzo/prefix_tree/utils.py,sha256=7DETf9i_OclRnWel680qD4wO1b8SffJVKq2Kx0zkTaQ,1489
+sequenzo/sequence_characteristics/__init__.py,sha256=dPdBD7K-dhsuLoVYhDDVUj9_DYBLPxSUh9GPJ8y2P4k,1224
+sequenzo/sequence_characteristics/complexity_index.py,sha256=KZ9TpaHtSIkbaqiOqEGRoFDYenrcuIzv34Du_RbL-6A,1762
+sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py,sha256=ipyOVZ_o9xC-VYMLIPU7QcMlpJzyzAYG3qKdlBV5HS0,9302
+sequenzo/sequence_characteristics/plot_characteristics.py,sha256=LYOCNoS5BnFVbY1r-HEJSrQyACOTkxHuxguS4wVLI9o,25612
+sequenzo/sequence_characteristics/simple_characteristics.py,sha256=3dj8R_tDEtC7Wk58PzX4q0nXW9orW4f1hO1Lt2uXeCc,11715
+sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py,sha256=S5vzqUrJF_tadIlgd-S-jHfwWo3agFzc1ptAB6CXfPE,1313
+sequenzo/sequence_characteristics/turbulence.py,sha256=bixo1wcGNKYhsNmppORwv_fjy7xQxhGHo-OebG_TnYE,6217
+sequenzo/sequence_characteristics/variance_of_spell_durations.py,sha256=hx00o_ypk3VDUU1VHOI8eN_Fy12CKlOd02NeF_fKl04,3299
+sequenzo/sequence_characteristics/within_sequence_entropy.py,sha256=K9uhkTcy7SkW5By1lNX1DS6mREGj49ElgdPs1erJ-bI,1500
+sequenzo/suffix_tree/__init__.py,sha256=rJTkjwxg2Ub_jGxugYmEYWatTxtKu_BTWNDZbJ-KgsI,1148
+sequenzo/suffix_tree/individual_level_indicators.py,sha256=W36tEQEEmzu67gf5BLmau8Ja6-1BEBG5ArzZqbKc-PM,67211
+sequenzo/suffix_tree/system_level_indicators.py,sha256=N4DrjM9fBHFqqcjDN1TAkwbkoDnlZSK2F8F2ERCizIQ,16962
+sequenzo/suffix_tree/utils.py,sha256=G1qYVNTTZHoUbY7x-j1FlZ-XfnXpGVHpaaa_tE4hMAE,1637
+sequenzo/visualization/__init__.py,sha256=JKYTCx4qbXF7oAE0OrfH_Tw5WhzTU_HJEn7XjJncFBw,944
+sequenzo/visualization/plot_mean_time.py,sha256=5K1iBNCYTs4JrPlxaiZ1WF-0p-paDHPfj6FdGO0TSbY,7070
+sequenzo/visualization/plot_modal_state.py,sha256=wTAhdlu4px-dJdxM9LSSgDQioW46r-N08pt2hhSeU9c,9919
+sequenzo/visualization/plot_most_frequent_sequences.py,sha256=UbkCjPUCKRAVY06Hm8HVSBI9_8iKFxkBdWwoMNmy0BE,6317
+sequenzo/visualization/plot_relative_frequency.py,sha256=tUNyIxc8C0SPjRJJYormBbTxWjvbox-pjaH9suzjRwU,16423
+sequenzo/visualization/plot_sequence_index.py,sha256=qc4h6JzQrDeiBsGvK6Cdn3HwDZFLfNzPqyFOon1ZQ6Q,41079
+sequenzo/visualization/plot_single_medoid.py,sha256=yqKzUANkmA-f-oreDZuAVAzMrALxn_uGjg815HAjKag,5971
+sequenzo/visualization/plot_state_distribution.py,sha256=8uH533kwyqxIeGPM4eFJBWJ2eRgqEFPH3EiPJECzvS8,25978
+sequenzo/visualization/plot_transition_matrix.py,sha256=aQVJ61UictR5FtjvDvpzIYQZ0EdllJ0Cw_U3ZgxTgiE,6959
+sequenzo/visualization/utils/__init__.py,sha256=brrYzeIQm_cEM_TgA8_eRdckzN9WP1pj9g-f1qBzRLY,734
+sequenzo/visualization/utils/utils.py,sha256=9Z1L3PVL-Z41fvCW4tLJ5DaUVHO6C6PAJYlT2Q1jY4k,10249
+sequenzo/with_event_history_analysis/__init__.py,sha256=B2EZhtJ7NEzO8piDwfSbh0l87fQ0ZuesPO5GNJEXKPo,730
+sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py,sha256=wtsKnq-82bJhRH78cy49Nzo3yGJKoFD4RckoZ7D-SS8,37301
+sequenzo/with_event_history_analysis/sequence_history_analysis.py,sha256=vv5y2u9cpzhmNJX_fSYgLmFOncPvB7DVhWujljII1vA,10902
+sequenzo-0.1.19.dist-info/licenses/LICENSE,sha256=URRMyLHVeGF2kyDLC1xbRKBBIjDHJyWqF4nWpzfBX10,1497
+sequenzo-0.1.19.dist-info/METADATA,sha256=q5gIoiMbMlVxPRzkhFj6XB5zyuJ-DMU-AjyohJr0tis,14189
+sequenzo-0.1.19.dist-info/WHEEL,sha256=EOGtw-LpzLQPCSF3QP-yT4xdfA0v97p09Et-l29cEBs,114
+sequenzo-0.1.19.dist-info/top_level.txt,sha256=yM8eczbPzqB1bRHMYLptvjjQ3p5tYhY6VjgWHUIi9vw,9
+sequenzo-0.1.19.dist-info/RECORD,,

sequenzo/dissimilarity_measures/setup.py

@@ -1,35 +0,0 @@
-"""
-@Author  : 李欣怡
-@File    : setup.py
-@Time    : 2025/3/30 16:55
-@Desc    : build for Cython
-"""
-from setuptools import setup, Extension
-from Cython.Build import cythonize
-import numpy as np
-
-cython_files = [
-    "utils/get_sm_trate_substitution_cost_matrix.pyx",
-    "utils/seqconc.pyx",
-    "utils/seqdss.pyx",
-    "utils/seqdur.pyx",
-    "utils/seqlength.pyx"
-]
-
-extensions = [
-    Extension(
-        name="utils." + filename.split("/")[-1].split(".")[0],
-        sources=[filename],
-        include_dirs=[np.get_include()],
-        define_macros=[('NPY_NO_DEPRECATED_API', '1')]
-    )
-    for filename in cython_files
-]
-
-setup(
-    name="Sequenzo Cython Extensions",
-    ext_modules=cythonize(extensions),
-    include_dirs=[np.get_include()],
-)
-
-