sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  402. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -13,6 +13,7 @@
13
13
  #define XSIMD_NEON_HPP
14
14
 
15
15
  #include <algorithm>
16
+ #include <array>
16
17
  #include <complex>
17
18
  #include <tuple>
18
19
  #include <type_traits>
@@ -717,16 +718,10 @@ namespace xsimd
717
718
  return vnegq_s32(rhs);
718
719
  }
719
720
 
720
- template <class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
721
- XSIMD_INLINE batch<T, A> neg(batch<T, A> const& rhs, requires_arch<neon>) noexcept
722
- {
723
- return batch<T, A> { -rhs.get(0), -rhs.get(1) };
724
- }
725
-
726
- template <class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
721
+ template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
727
722
  XSIMD_INLINE batch<T, A> neg(batch<T, A> const& rhs, requires_arch<neon>) noexcept
728
723
  {
729
- return batch<T, A> { -rhs.get(0), -rhs.get(1) };
724
+ return 0 - rhs;
730
725
  }
731
726
 
732
727
  template <class A>
@@ -923,16 +918,28 @@ namespace xsimd
923
918
  return dispatcher.apply(register_type(lhs), register_type(rhs));
924
919
  }
925
920
 
926
- template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
921
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
927
922
  XSIMD_INLINE batch_bool<T, A> eq(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
928
923
  {
929
- return batch_bool<T, A>({ lhs.get(0) == rhs.get(0), lhs.get(1) == rhs.get(1) });
924
+ auto eq32 = vceqq_u32(vreinterpretq_u32_u64(lhs.data), vreinterpretq_u32_u64(rhs.data));
925
+ auto rev32 = vrev64q_u32(eq32);
926
+ auto eq64 = vandq_u32(eq32, rev32);
927
+ return batch_bool<T, A>(vreinterpretq_u64_u32(eq64));
928
+ }
929
+
930
+ template <class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
931
+ XSIMD_INLINE batch_bool<T, A> eq(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
932
+ {
933
+ auto eq32 = vceqq_u32(vreinterpretq_u32_s64(lhs.data), vreinterpretq_u32_s64(rhs.data));
934
+ auto rev32 = vrev64q_u32(eq32);
935
+ auto eq64 = vandq_u32(eq32, rev32);
936
+ return batch_bool<T, A>(vreinterpretq_u64_u32(eq64));
930
937
  }
931
938
 
932
939
  template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
933
940
  XSIMD_INLINE batch_bool<T, A> eq(batch_bool<T, A> const& lhs, batch_bool<T, A> const& rhs, requires_arch<neon>) noexcept
934
941
  {
935
- return batch_bool<T, A>({ lhs.get(0) == rhs.get(0), lhs.get(1) == rhs.get(1) });
942
+ return eq(batch<T, A> { lhs.data }, batch<T, A> { rhs.data }, A {});
936
943
  }
937
944
 
938
945
  /*************
@@ -985,10 +992,19 @@ namespace xsimd
985
992
  return dispatcher.apply(register_type(lhs), register_type(rhs));
986
993
  }
987
994
 
988
- template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
995
+ template <class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
996
+ XSIMD_INLINE batch_bool<T, A> lt(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
997
+ {
998
+ using register_type = typename batch<T, A>::register_type;
999
+ return batch_bool<T, A>(vreinterpretq_u64_s64(vshrq_n_s64(vqsubq_s64(register_type(lhs), register_type(rhs)), 63)));
1000
+ }
1001
+
1002
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
989
1003
  XSIMD_INLINE batch_bool<T, A> lt(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
990
1004
  {
991
- return batch_bool<T, A>({ lhs.get(0) < rhs.get(0), lhs.get(1) < rhs.get(1) });
1005
+ using register_type = typename batch<T, A>::register_type;
1006
+ register_type acc = { 0x7FFFFFFFFFFFFFFFull, 0x7FFFFFFFFFFFFFFFull };
1007
+ return batch_bool<T, A>(vreinterpretq_u64_s64(vshrq_n_s64(vreinterpretq_s64_u64(vqaddq_u64(vqsubq_u64(register_type(rhs), register_type(lhs)), acc)), 63)));
992
1008
  }
993
1009
 
994
1010
  /******
@@ -1012,12 +1028,24 @@ namespace xsimd
1012
1028
  template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
1013
1029
  XSIMD_INLINE batch_bool<T, A> le(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1014
1030
  {
1015
- return batch_bool<T, A>({ lhs.get(0) <= rhs.get(0), lhs.get(1) <= rhs.get(1) });
1031
+ return !(lhs > rhs);
1016
1032
  }
1017
1033
 
1018
1034
  /******
1019
1035
  * gt *
1020
1036
  ******/
1037
+ namespace detail
1038
+ {
1039
+ XSIMD_INLINE int64x2_t bitwise_not_s64(int64x2_t arg) noexcept
1040
+ {
1041
+ return vreinterpretq_s64_s32(vmvnq_s32(vreinterpretq_s32_s64(arg)));
1042
+ }
1043
+
1044
+ XSIMD_INLINE uint64x2_t bitwise_not_u64(uint64x2_t arg) noexcept
1045
+ {
1046
+ return vreinterpretq_u64_u32(vmvnq_u32(vreinterpretq_u32_u64(arg)));
1047
+ }
1048
+ }
1021
1049
 
1022
1050
  WRAP_BINARY_INT_EXCLUDING_64(vcgtq, detail::comp_return_type)
1023
1051
  WRAP_BINARY_FLOAT(vcgtq, detail::comp_return_type)
@@ -1033,10 +1061,19 @@ namespace xsimd
1033
1061
  return dispatcher.apply(register_type(lhs), register_type(rhs));
1034
1062
  }
1035
1063
 
1036
- template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
1064
+ template <class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
1037
1065
  XSIMD_INLINE batch_bool<T, A> gt(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1038
1066
  {
1039
- return batch_bool<T, A>({ lhs.get(0) > rhs.get(0), lhs.get(1) > rhs.get(1) });
1067
+ using register_type = typename batch<T, A>::register_type;
1068
+ return batch_bool<T, A>(vreinterpretq_u64_s64(vshrq_n_s64(vqsubq_s64(register_type(rhs), register_type(lhs)), 63)));
1069
+ }
1070
+
1071
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
1072
+ XSIMD_INLINE batch_bool<T, A> gt(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1073
+ {
1074
+ using register_type = typename batch<T, A>::register_type;
1075
+ register_type acc = { 0x7FFFFFFFFFFFFFFFull, 0x7FFFFFFFFFFFFFFFull };
1076
+ return batch_bool<T, A>(vreinterpretq_u64_s64(vshrq_n_s64(vreinterpretq_s64_u64(vqaddq_u64(vqsubq_u64(register_type(lhs), register_type(rhs)), acc)), 63)));
1040
1077
  }
1041
1078
 
1042
1079
  /******
@@ -1060,7 +1097,7 @@ namespace xsimd
1060
1097
  template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
1061
1098
  XSIMD_INLINE batch_bool<T, A> ge(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1062
1099
  {
1063
- return batch_bool<T, A>({ lhs.get(0) >= rhs.get(0), lhs.get(1) >= rhs.get(1) });
1100
+ return !(lhs < rhs);
1064
1101
  }
1065
1102
 
1066
1103
  /*******************
@@ -1212,16 +1249,6 @@ namespace xsimd
1212
1249
 
1213
1250
  namespace detail
1214
1251
  {
1215
- XSIMD_INLINE int64x2_t bitwise_not_s64(int64x2_t arg) noexcept
1216
- {
1217
- return vreinterpretq_s64_s32(vmvnq_s32(vreinterpretq_s32_s64(arg)));
1218
- }
1219
-
1220
- XSIMD_INLINE uint64x2_t bitwise_not_u64(uint64x2_t arg) noexcept
1221
- {
1222
- return vreinterpretq_u64_u32(vmvnq_u32(vreinterpretq_u32_u64(arg)));
1223
- }
1224
-
1225
1252
  XSIMD_INLINE float32x4_t bitwise_not_f32(float32x4_t arg) noexcept
1226
1253
  {
1227
1254
  return vreinterpretq_f32_u32(vmvnq_u32(vreinterpretq_u32_f32(arg)));
@@ -1314,7 +1341,7 @@ namespace xsimd
1314
1341
  template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
1315
1342
  XSIMD_INLINE batch<T, A> min(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1316
1343
  {
1317
- return { std::min(lhs.get(0), rhs.get(0)), std::min(lhs.get(1), rhs.get(1)) };
1344
+ return select(lhs > rhs, rhs, lhs);
1318
1345
  }
1319
1346
 
1320
1347
  /*******
@@ -1338,7 +1365,7 @@ namespace xsimd
1338
1365
  template <class A, class T, detail::enable_sized_integral_t<T, 8> = 0>
1339
1366
  XSIMD_INLINE batch<T, A> max(batch<T, A> const& lhs, batch<T, A> const& rhs, requires_arch<neon>) noexcept
1340
1367
  {
1341
- return { std::max(lhs.get(0), rhs.get(0)), std::max(lhs.get(1), rhs.get(1)) };
1368
+ return select(lhs > rhs, lhs, rhs);
1342
1369
  }
1343
1370
 
1344
1371
  /*******
@@ -1678,14 +1705,21 @@ namespace xsimd
1678
1705
  * reduce_max *
1679
1706
  **************/
1680
1707
 
1681
- // Using common implementation because ARM doe snot provide intrinsics
1708
+ // Using common implementation because ARM does not provide intrinsics
1682
1709
  // for this operation
1683
1710
 
1684
1711
  /**************
1685
1712
  * reduce_min *
1686
1713
  **************/
1687
1714
 
1688
- // Using common implementation because ARM doe snot provide intrinsics
1715
+ // Using common implementation because ARM does not provide intrinsics
1716
+ // for this operation
1717
+
1718
+ /**************
1719
+ * reduce_mul *
1720
+ **************/
1721
+
1722
+ // Using common implementation because ARM does not provide intrinsics
1689
1723
  // for this operation
1690
1724
 
1691
1725
  /**********
@@ -2280,6 +2314,55 @@ namespace xsimd
2280
2314
  return vshlq_s64(lhs, rhs);
2281
2315
  }
2282
2316
 
2317
+ // immediate variant
2318
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 1> = 0>
2319
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2320
+ {
2321
+ return vshlq_n_u8(x, shift);
2322
+ }
2323
+
2324
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 1> = 0>
2325
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2326
+ {
2327
+ return vshlq_n_s8(x, shift);
2328
+ }
2329
+
2330
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 2> = 0>
2331
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2332
+ {
2333
+ return vshlq_n_u16(x, shift);
2334
+ }
2335
+
2336
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 2> = 0>
2337
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2338
+ {
2339
+ return vshlq_n_s16(x, shift);
2340
+ }
2341
+
2342
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 4> = 0>
2343
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2344
+ {
2345
+ return vshlq_n_u32(x, shift);
2346
+ }
2347
+
2348
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 4> = 0>
2349
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2350
+ {
2351
+ return vshlq_n_s32(x, shift);
2352
+ }
2353
+
2354
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
2355
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2356
+ {
2357
+ return vshlq_n_u64(x, shift);
2358
+ }
2359
+
2360
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
2361
+ XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2362
+ {
2363
+ return vshlq_n_s64(x, shift);
2364
+ }
2365
+
2283
2366
  /******************
2284
2367
  * bitwise_rshift *
2285
2368
  ******************/
@@ -2455,6 +2538,110 @@ namespace xsimd
2455
2538
  return vshlq_s32(lhs, vnegq_s32(rhs));
2456
2539
  }
2457
2540
 
2541
+ // immediate variant
2542
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 1> = 0>
2543
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2544
+ {
2545
+ return vshrq_n_u8(x, shift);
2546
+ }
2547
+
2548
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 1> = 0>
2549
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2550
+ {
2551
+ return vshrq_n_s8(x, shift);
2552
+ }
2553
+
2554
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 2> = 0>
2555
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2556
+ {
2557
+ return vshrq_n_u16(x, shift);
2558
+ }
2559
+
2560
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 2> = 0>
2561
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2562
+ {
2563
+ return vshrq_n_s16(x, shift);
2564
+ }
2565
+
2566
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 4> = 0>
2567
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2568
+ {
2569
+ return vshrq_n_u32(x, shift);
2570
+ }
2571
+
2572
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 4> = 0>
2573
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2574
+ {
2575
+ return vshrq_n_s32(x, shift);
2576
+ }
2577
+
2578
+ template <size_t shift, class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
2579
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2580
+ {
2581
+ return vshrq_n_u64(x, shift);
2582
+ }
2583
+
2584
+ template <size_t shift, class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
2585
+ XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x, requires_arch<neon>) noexcept
2586
+ {
2587
+ return vshrq_n_s64(x, shift);
2588
+ }
2589
+
2590
+ // first
2591
+ template <class A>
2592
+ XSIMD_INLINE float first(batch<float, A> const& self, requires_arch<neon>) noexcept
2593
+ {
2594
+ return vgetq_lane_f32(self, 0);
2595
+ }
2596
+
2597
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 1> = 0>
2598
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2599
+ {
2600
+ return vgetq_lane_u8(val, 0);
2601
+ }
2602
+
2603
+ template <class A, class T, detail::enable_sized_signed_t<T, 1> = 0>
2604
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2605
+ {
2606
+ return vgetq_lane_s8(val, 0);
2607
+ }
2608
+
2609
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 2> = 0>
2610
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2611
+ {
2612
+ return vgetq_lane_u16(val, 0);
2613
+ }
2614
+
2615
+ template <class A, class T, detail::enable_sized_signed_t<T, 2> = 0>
2616
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2617
+ {
2618
+ return vgetq_lane_s16(val, 0);
2619
+ }
2620
+
2621
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 4> = 0>
2622
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2623
+ {
2624
+ return vgetq_lane_u32(val, 0);
2625
+ }
2626
+
2627
+ template <class A, class T, detail::enable_sized_signed_t<T, 4> = 0>
2628
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2629
+ {
2630
+ return vgetq_lane_s32(val, 0);
2631
+ }
2632
+
2633
+ template <class A, class T, detail::enable_sized_unsigned_t<T, 8> = 0>
2634
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2635
+ {
2636
+ return vgetq_lane_u64(val, 0);
2637
+ }
2638
+
2639
+ template <class A, class T, detail::enable_sized_signed_t<T, 8> = 0>
2640
+ XSIMD_INLINE T first(batch<T, A> val, requires_arch<neon>) noexcept
2641
+ {
2642
+ return vgetq_lane_s64(val, 0);
2643
+ }
2644
+
2458
2645
  // Overloads of bitwise shifts accepting two batches of uint64/int64 are not available with ARMv7
2459
2646
 
2460
2647
  /*******
@@ -2771,10 +2958,11 @@ namespace xsimd
2771
2958
  XSIMD_INLINE batch<T, A> rotate_left(batch<T, A> const& a, requires_arch<neon>) noexcept
2772
2959
  {
2773
2960
  using register_type = typename batch<T, A>::register_type;
2961
+ // Adding modulo to avoid warning.
2774
2962
  const detail::neon_dispatcher::binary dispatcher = {
2775
- std::make_tuple(wrap::rotate_left_u8<N>, wrap::rotate_left_s8<N>, wrap::rotate_left_u16<N>, wrap::rotate_left_s16<N>,
2776
- wrap::rotate_left_u32<N>, wrap::rotate_left_s32<N>, wrap::rotate_left_u64<N>, wrap::rotate_left_s64<N>,
2777
- wrap::rotate_left_f32<N>)
2963
+ std::make_tuple(wrap::rotate_left_u8<N>, wrap::rotate_left_s8<N>, wrap::rotate_left_u16<N % 8>, wrap::rotate_left_s16<N % 8>,
2964
+ wrap::rotate_left_u32<N % 4>, wrap::rotate_left_s32<N % 4>, wrap::rotate_left_u64<N % 2>, wrap::rotate_left_s64<N % 2>,
2965
+ wrap::rotate_left_f32<N % 4>)
2778
2966
  };
2779
2967
  return dispatcher.apply(register_type(a), register_type(a));
2780
2968
  }
@@ -2799,6 +2987,147 @@ namespace xsimd
2799
2987
  self.store_aligned(data.data());
2800
2988
  return set(batch<T, A>(), A(), data[idx]...);
2801
2989
  }
2990
+
2991
+ template <class A, uint64_t V0, uint64_t V1>
2992
+ XSIMD_INLINE batch<uint64_t, A> swizzle(batch<uint64_t, A> const& self,
2993
+ batch_constant<uint64_t, A, V0, V1>,
2994
+ requires_arch<neon>) noexcept
2995
+ {
2996
+ XSIMD_IF_CONSTEXPR(V0 == 0 && V1 == 0)
2997
+ {
2998
+ auto lo = vget_low_u64(self);
2999
+ return vcombine_u64(lo, lo);
3000
+ }
3001
+ XSIMD_IF_CONSTEXPR(V0 == 1 && V1 == 1)
3002
+ {
3003
+ auto hi = vget_high_u64(self);
3004
+ return vcombine_u64(hi, hi);
3005
+ }
3006
+ XSIMD_IF_CONSTEXPR(V0 == 0 && V1 == 1)
3007
+ {
3008
+ return self;
3009
+ }
3010
+ else
3011
+ {
3012
+ return vextq_u64(self, self, 1);
3013
+ }
3014
+ }
3015
+
3016
+ template <class A, uint64_t V0, uint64_t V1>
3017
+ XSIMD_INLINE batch<int64_t, A> swizzle(batch<int64_t, A> const& self,
3018
+ batch_constant<int64_t, A, V0, V1> mask,
3019
+ requires_arch<neon>) noexcept
3020
+ {
3021
+ return vreinterpretq_s64_u64(swizzle(vreinterpretq_u64_s64(self), mask, A {}));
3022
+ }
3023
+
3024
+ namespace detail
3025
+ {
3026
+ template <uint32_t Va, uint32_t Vb>
3027
+ XSIMD_INLINE uint8x8_t make_mask()
3028
+ {
3029
+ uint8x8_t res = {
3030
+ static_cast<uint8_t>((Va % 2) * 4 + 0),
3031
+ static_cast<uint8_t>((Va % 2) * 4 + 1),
3032
+ static_cast<uint8_t>((Va % 2) * 4 + 2),
3033
+ static_cast<uint8_t>((Va % 2) * 4 + 3),
3034
+ static_cast<uint8_t>((Vb % 2) * 4 + 0),
3035
+ static_cast<uint8_t>((Vb % 2) * 4 + 1),
3036
+ static_cast<uint8_t>((Vb % 2) * 4 + 2),
3037
+ static_cast<uint8_t>((Vb % 2) * 4 + 3),
3038
+ };
3039
+ return res;
3040
+ }
3041
+ }
3042
+
3043
+ template <class A, uint32_t V0, uint32_t V1, uint32_t V2, uint32_t V3>
3044
+ XSIMD_INLINE batch<uint32_t, A> swizzle(batch<uint32_t, A> const& self,
3045
+ batch_constant<uint32_t, A, V0, V1, V2, V3> mask,
3046
+ requires_arch<neon>) noexcept
3047
+ {
3048
+ constexpr bool is_identity = detail::is_identity(mask);
3049
+ constexpr bool is_dup_lo = detail::is_dup_lo(mask);
3050
+ constexpr bool is_dup_hi = detail::is_dup_hi(mask);
3051
+
3052
+ XSIMD_IF_CONSTEXPR(is_identity)
3053
+ {
3054
+ return self;
3055
+ }
3056
+ XSIMD_IF_CONSTEXPR(is_dup_lo)
3057
+ {
3058
+ XSIMD_IF_CONSTEXPR(V0 == 0 && V1 == 1)
3059
+ {
3060
+ return vreinterpretq_u32_u64(vdupq_lane_u64(vget_low_u64(vreinterpretq_u64_u32(self)), 0));
3061
+ }
3062
+ XSIMD_IF_CONSTEXPR(V0 == 1 && V1 == 0)
3063
+ {
3064
+ return vreinterpretq_u32_u64(vdupq_lane_u64(vreinterpret_u64_u32(vrev64_u32(vget_low_u32(self))), 0));
3065
+ }
3066
+ return vdupq_n_u32(vgetq_lane_u32(self, V0));
3067
+ }
3068
+ XSIMD_IF_CONSTEXPR(is_dup_hi)
3069
+ {
3070
+ XSIMD_IF_CONSTEXPR(V0 == 2 && V1 == 3)
3071
+ {
3072
+ return vreinterpretq_u32_u64(vdupq_lane_u64(vget_high_u64(vreinterpretq_u64_u32(self)), 0));
3073
+ }
3074
+ XSIMD_IF_CONSTEXPR(V0 == 3 && V1 == 2)
3075
+ {
3076
+ return vreinterpretq_u32_u64(vdupq_lane_u64(vreinterpret_u64_u32(vrev64_u32(vget_high_u32(self))), 0));
3077
+ }
3078
+ return vdupq_n_u32(vgetq_lane_u32(self, V0));
3079
+ }
3080
+ XSIMD_IF_CONSTEXPR(V0 < 2 && V1 < 2 && V2 < 2 && V3 < 2)
3081
+ {
3082
+ uint8x8_t low = vreinterpret_u8_u64(vget_low_u64(vreinterpretq_u64_u32(self)));
3083
+ uint8x8_t mask_lo = detail::make_mask<V0, V1>();
3084
+ uint8x8_t mask_hi = detail::make_mask<V2, V3>();
3085
+ uint8x8_t lo = vtbl1_u8(low, mask_lo);
3086
+ uint8x8_t hi = vtbl1_u8(low, mask_hi);
3087
+ return vreinterpretq_u32_u8(vcombine_u8(lo, hi));
3088
+ }
3089
+ XSIMD_IF_CONSTEXPR(V0 >= 2 && V1 >= 2 && V2 >= 2 && V3 >= 2)
3090
+ {
3091
+ uint8x8_t high = vreinterpret_u8_u64(vget_high_u64(vreinterpretq_u64_u32(self)));
3092
+ uint8x8_t mask_lo = detail::make_mask<V0, V1>();
3093
+ uint8x8_t mask_hi = detail::make_mask<V2, V3>();
3094
+ uint8x8_t lo = vtbl1_u8(high, mask_lo);
3095
+ uint8x8_t hi = vtbl1_u8(high, mask_hi);
3096
+ return vreinterpretq_u32_u8(vcombine_u8(lo, hi));
3097
+ }
3098
+
3099
+ uint8x8_t mask_lo = detail::make_mask<V0, V1>();
3100
+ uint8x8_t mask_hi = detail::make_mask<V2, V3>();
3101
+
3102
+ uint8x8_t low = vreinterpret_u8_u64(vget_low_u64(vreinterpretq_u64_u32(self)));
3103
+ uint8x8_t lol = vtbl1_u8(low, mask_lo);
3104
+ uint8x8_t loh = vtbl1_u8(low, mask_hi);
3105
+ uint32x4_t true_br = vreinterpretq_u32_u8(vcombine_u8(lol, loh));
3106
+
3107
+ uint8x8_t high = vreinterpret_u8_u64(vget_high_u64(vreinterpretq_u64_u32(self)));
3108
+ uint8x8_t hil = vtbl1_u8(high, mask_lo);
3109
+ uint8x8_t hih = vtbl1_u8(high, mask_hi);
3110
+ uint32x4_t false_br = vreinterpretq_u32_u8(vcombine_u8(hil, hih));
3111
+
3112
+ batch_bool_constant<uint32_t, A, (V0 < 2), (V1 < 2), (V2 < 2), (V3 < 2)> blend_mask;
3113
+ return select(blend_mask, batch<uint32_t, A>(true_br), batch<uint32_t, A>(false_br), A {});
3114
+ }
3115
+
3116
+ template <class A, uint32_t V0, uint32_t V1, uint32_t V2, uint32_t V3>
3117
+ XSIMD_INLINE batch<int32_t, A> swizzle(batch<int32_t, A> const& self,
3118
+ batch_constant<int32_t, A, V0, V1, V2, V3> mask,
3119
+ requires_arch<neon>) noexcept
3120
+ {
3121
+ return vreinterpretq_s32_u32(swizzle(vreinterpretq_u32_s32(self), mask, A {}));
3122
+ }
3123
+
3124
+ template <class A, uint32_t V0, uint32_t V1, uint32_t V2, uint32_t V3>
3125
+ XSIMD_INLINE batch<float, A> swizzle(batch<float, A> const& self,
3126
+ batch_constant<uint32_t, A, V0, V1, V2, V3> mask,
3127
+ requires_arch<neon>) noexcept
3128
+ {
3129
+ return vreinterpretq_f32_u32(swizzle(batch<uint32_t, A>(vreinterpretq_u32_f32(self)), mask, A {}));
3130
+ }
2802
3131
  }
2803
3132
 
2804
3133
  }
@@ -28,6 +28,13 @@ namespace xsimd
28
28
  {
29
29
  using namespace types;
30
30
 
31
+ // first
32
+ template <class A>
33
+ XSIMD_INLINE double first(batch<double, A> const& self, requires_arch<neon64>) noexcept
34
+ {
35
+ return vgetq_lane_f64(self, 0);
36
+ }
37
+
31
38
  /*******
32
39
  * all *
33
40
  *******/
@@ -1335,6 +1335,19 @@ namespace xsimd
1335
1335
  return result;
1336
1336
  }
1337
1337
 
1338
+ // first
1339
+ template <class A, class T, detail::rvv_enable_all_t<T> = 0>
1340
+ XSIMD_INLINE T first(batch<T, A> const& arg, requires_arch<rvv>) noexcept
1341
+ {
1342
+ return detail::rvvmv_lane0(arg);
1343
+ }
1344
+
1345
+ template <class A, class T, detail::rvv_enable_all_t<T> = 0>
1346
+ XSIMD_INLINE std::complex<T> first(batch<std::complex<T>, A> const& arg, requires_arch<rvv>) noexcept
1347
+ {
1348
+ return std::complex<T> { detail::rvvmv_lane0(arg.real()), detail::rvvmv_lane0(arg.imag()) };
1349
+ }
1350
+
1338
1351
  // insert
1339
1352
  template <class A, class T, size_t I, detail::rvv_enable_all_t<T> = 0>
1340
1353
  XSIMD_INLINE batch<T, A> insert(batch<T, A> const& arg, T val, index<I>, requires_arch<rvv>) noexcept
@@ -300,12 +300,29 @@ namespace xsimd
300
300
  return x << shift;
301
301
  }
302
302
 
303
+ template <size_t shift, class T>
304
+ XSIMD_INLINE typename std::enable_if<std::is_integral<T>::value, T>::type
305
+ bitwise_lshift(T x) noexcept
306
+ {
307
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
308
+ static_assert(shift < bits, "Count must be less than the number of bits in T");
309
+ return x << shift;
310
+ }
311
+
303
312
  template <class T0, class T1>
304
313
  XSIMD_INLINE typename std::enable_if<std::is_integral<T0>::value && std::is_integral<T1>::value, T0>::type
305
314
  bitwise_rshift(T0 x, T1 shift) noexcept
306
315
  {
307
316
  return x >> shift;
308
317
  }
318
+ template <size_t shift, class T>
319
+ XSIMD_INLINE typename std::enable_if<std::is_integral<T>::value, T>::type
320
+ bitwise_rshift(T x) noexcept
321
+ {
322
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
323
+ static_assert(shift < bits, "Count must be less than the number of bits in T");
324
+ return x >> shift;
325
+ }
309
326
 
310
327
  template <class T>
311
328
  XSIMD_INLINE typename std::enable_if<std::is_integral<T>::value, T>::type
@@ -447,16 +464,32 @@ namespace xsimd
447
464
  XSIMD_INLINE typename std::enable_if<std::is_integral<T0>::value && std::is_integral<T1>::value, T0>::type
448
465
  rotl(T0 x, T1 shift) noexcept
449
466
  {
450
- constexpr auto N = std::numeric_limits<T0>::digits;
451
- return (x << shift) | (x >> (N - shift));
467
+ constexpr auto bits = std::numeric_limits<T0>::digits + std::numeric_limits<T0>::is_signed;
468
+ return (x << shift) | (x >> (bits - shift));
469
+ }
470
+ template <size_t count, class T>
471
+ XSIMD_INLINE typename std::enable_if<std::is_integral<T>::value, T>::type
472
+ rotl(T x) noexcept
473
+ {
474
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
475
+ static_assert(count < bits, "Count must be less than the number of bits in T");
476
+ return (x << count) | (x >> (bits - count));
452
477
  }
453
478
 
454
479
  template <class T0, class T1>
455
480
  XSIMD_INLINE typename std::enable_if<std::is_integral<T0>::value && std::is_integral<T1>::value, T0>::type
456
481
  rotr(T0 x, T1 shift) noexcept
457
482
  {
458
- constexpr auto N = std::numeric_limits<T0>::digits;
459
- return (x >> shift) | (x << (N - shift));
483
+ constexpr auto bits = std::numeric_limits<T0>::digits + std::numeric_limits<T0>::is_signed;
484
+ return (x >> shift) | (x << (bits - shift));
485
+ }
486
+ template <size_t count, class T>
487
+ XSIMD_INLINE typename std::enable_if<std::is_integral<T>::value, T>::type
488
+ rotr(T x) noexcept
489
+ {
490
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
491
+ static_assert(count < bits, "Count must be less than the number of bits in T");
492
+ return (x >> count) | (x << (bits - count));
460
493
  }
461
494
 
462
495
  template <class T>
@@ -510,7 +543,11 @@ namespace xsimd
510
543
  template <class T, class = typename std::enable_if<std::is_scalar<T>::value>::type>
511
544
  XSIMD_INLINE bool is_flint(const T& x) noexcept
512
545
  {
546
+ #ifdef __FAST_MATH__
547
+ return (x - std::trunc(x)) == T(0);
548
+ #else
513
549
  return std::isnan(x - x) ? false : (x - std::trunc(x)) == T(0);
550
+ #endif
514
551
  }
515
552
 
516
553
  template <class T, class = typename std::enable_if<std::is_scalar<T>::value>::type>