sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,329 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2015 Eugene Brevdo <ebrevdo@gmail.com>
5
- // Benoit Steiner <benoit.steiner.goog@gmail.com>
6
- //
7
- // This Source Code Form is subject to the terms of the Mozilla
8
- // Public License v. 2.0. If a copy of the MPL was not distributed
9
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
-
11
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_ARG_MAX_H
12
- #define EIGEN_CXX11_TENSOR_TENSOR_ARG_MAX_H
13
-
14
- namespace Eigen {
15
- namespace internal {
16
-
17
- /** \class TensorIndexTuple
18
- * \ingroup CXX11_Tensor_Module
19
- *
20
- * \brief Tensor + Index Tuple class.
21
- *
22
- *
23
- */
24
- template<typename XprType>
25
- struct traits<TensorIndexTupleOp<XprType> > : public traits<XprType>
26
- {
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef Tuple<Index, typename XprTraits::Scalar> Scalar;
31
- typedef typename XprType::Nested Nested;
32
- typedef typename remove_reference<Nested>::type _Nested;
33
- static const int NumDimensions = XprTraits::NumDimensions;
34
- static const int Layout = XprTraits::Layout;
35
- };
36
-
37
- template<typename XprType>
38
- struct eval<TensorIndexTupleOp<XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorIndexTupleOp<XprType>EIGEN_DEVICE_REF type;
41
- };
42
-
43
- template<typename XprType>
44
- struct nested<TensorIndexTupleOp<XprType>, 1,
45
- typename eval<TensorIndexTupleOp<XprType> >::type>
46
- {
47
- typedef TensorIndexTupleOp<XprType> type;
48
- };
49
-
50
- } // end namespace internal
51
-
52
- template<typename XprType>
53
- class TensorIndexTupleOp : public TensorBase<TensorIndexTupleOp<XprType>, ReadOnlyAccessors>
54
- {
55
- public:
56
- typedef typename Eigen::internal::traits<TensorIndexTupleOp>::Scalar Scalar;
57
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
58
- typedef typename Eigen::internal::nested<TensorIndexTupleOp>::type Nested;
59
- typedef typename Eigen::internal::traits<TensorIndexTupleOp>::StorageKind StorageKind;
60
- typedef typename Eigen::internal::traits<TensorIndexTupleOp>::Index Index;
61
- typedef Tuple<Index, typename XprType::CoeffReturnType> CoeffReturnType;
62
-
63
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorIndexTupleOp(const XprType& expr)
64
- : m_xpr(expr) {}
65
-
66
- EIGEN_DEVICE_FUNC
67
- const typename internal::remove_all<typename XprType::Nested>::type&
68
- expression() const { return m_xpr; }
69
-
70
- protected:
71
- typename XprType::Nested m_xpr;
72
- };
73
-
74
- // Eval as rvalue
75
- template<typename ArgType, typename Device>
76
- struct TensorEvaluator<const TensorIndexTupleOp<ArgType>, Device>
77
- {
78
- typedef TensorIndexTupleOp<ArgType> XprType;
79
- typedef typename XprType::Index Index;
80
- typedef typename XprType::Scalar Scalar;
81
- typedef typename XprType::CoeffReturnType CoeffReturnType;
82
-
83
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions Dimensions;
84
- static const int NumDims = internal::array_size<Dimensions>::value;
85
- typedef StorageMemory<CoeffReturnType, Device> Storage;
86
- typedef typename Storage::Type EvaluatorPointerType;
87
-
88
- enum {
89
- IsAligned = /*TensorEvaluator<ArgType, Device>::IsAligned*/ false,
90
- PacketAccess = /*TensorEvaluator<ArgType, Device>::PacketAccess*/ false,
91
- BlockAccess = false,
92
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
93
- Layout = TensorEvaluator<ArgType, Device>::Layout,
94
- CoordAccess = false, // to be implemented
95
- RawAccess = false
96
- };
97
-
98
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
99
- typedef internal::TensorBlockNotImplemented TensorBlock;
100
- //===--------------------------------------------------------------------===//
101
-
102
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
103
- : m_impl(op.expression(), device) { }
104
-
105
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const {
106
- return m_impl.dimensions();
107
- }
108
-
109
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType /*data*/) {
110
- m_impl.evalSubExprsIfNeeded(NULL);
111
- return true;
112
- }
113
- EIGEN_STRONG_INLINE void cleanup() {
114
- m_impl.cleanup();
115
- }
116
-
117
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
118
- {
119
- return CoeffReturnType(index, m_impl.coeff(index));
120
- }
121
-
122
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
123
- costPerCoeff(bool vectorized) const {
124
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, 1);
125
- }
126
-
127
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
128
-
129
- #ifdef EIGEN_USE_SYCL
130
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
131
- m_impl.bind(cgh);
132
- }
133
- #endif
134
-
135
- protected:
136
- TensorEvaluator<ArgType, Device> m_impl;
137
- };
138
-
139
- namespace internal {
140
-
141
- /** \class TensorTupleIndex
142
- * \ingroup CXX11_Tensor_Module
143
- *
144
- * \brief Converts to Tensor<Tuple<Index, Scalar> > and reduces to Tensor<Index>.
145
- *
146
- */
147
- template<typename ReduceOp, typename Dims, typename XprType>
148
- struct traits<TensorTupleReducerOp<ReduceOp, Dims, XprType> > : public traits<XprType>
149
- {
150
- typedef traits<XprType> XprTraits;
151
- typedef typename XprTraits::StorageKind StorageKind;
152
- typedef typename XprTraits::Index Index;
153
- typedef Index Scalar;
154
- typedef typename XprType::Nested Nested;
155
- typedef typename remove_reference<Nested>::type _Nested;
156
- static const int NumDimensions = XprTraits::NumDimensions - array_size<Dims>::value;
157
- static const int Layout = XprTraits::Layout;
158
- };
159
-
160
- template<typename ReduceOp, typename Dims, typename XprType>
161
- struct eval<TensorTupleReducerOp<ReduceOp, Dims, XprType>, Eigen::Dense>
162
- {
163
- typedef const TensorTupleReducerOp<ReduceOp, Dims, XprType>EIGEN_DEVICE_REF type;
164
- };
165
-
166
- template<typename ReduceOp, typename Dims, typename XprType>
167
- struct nested<TensorTupleReducerOp<ReduceOp, Dims, XprType>, 1,
168
- typename eval<TensorTupleReducerOp<ReduceOp, Dims, XprType> >::type>
169
- {
170
- typedef TensorTupleReducerOp<ReduceOp, Dims, XprType> type;
171
- };
172
-
173
- } // end namespace internal
174
-
175
- template<typename ReduceOp, typename Dims, typename XprType>
176
- class TensorTupleReducerOp : public TensorBase<TensorTupleReducerOp<ReduceOp, Dims, XprType>, ReadOnlyAccessors>
177
- {
178
- public:
179
- typedef typename Eigen::internal::traits<TensorTupleReducerOp>::Scalar Scalar;
180
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
181
- typedef typename Eigen::internal::nested<TensorTupleReducerOp>::type Nested;
182
- typedef typename Eigen::internal::traits<TensorTupleReducerOp>::StorageKind StorageKind;
183
- typedef typename Eigen::internal::traits<TensorTupleReducerOp>::Index Index;
184
- typedef Index CoeffReturnType;
185
-
186
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorTupleReducerOp(const XprType& expr,
187
- const ReduceOp& reduce_op,
188
- const Index return_dim,
189
- const Dims& reduce_dims)
190
- : m_xpr(expr), m_reduce_op(reduce_op), m_return_dim(return_dim), m_reduce_dims(reduce_dims) {}
191
-
192
- EIGEN_DEVICE_FUNC
193
- const typename internal::remove_all<typename XprType::Nested>::type&
194
- expression() const { return m_xpr; }
195
-
196
- EIGEN_DEVICE_FUNC
197
- const ReduceOp& reduce_op() const { return m_reduce_op; }
198
-
199
- EIGEN_DEVICE_FUNC
200
- const Dims& reduce_dims() const { return m_reduce_dims; }
201
-
202
- EIGEN_DEVICE_FUNC
203
- Index return_dim() const { return m_return_dim; }
204
-
205
- protected:
206
- typename XprType::Nested m_xpr;
207
- const ReduceOp m_reduce_op;
208
- const Index m_return_dim;
209
- const Dims m_reduce_dims;
210
- };
211
-
212
- // Eval as rvalue
213
- template<typename ReduceOp, typename Dims, typename ArgType, typename Device>
214
- struct TensorEvaluator<const TensorTupleReducerOp<ReduceOp, Dims, ArgType>, Device>
215
- {
216
- typedef TensorTupleReducerOp<ReduceOp, Dims, ArgType> XprType;
217
- typedef typename XprType::Index Index;
218
- typedef typename XprType::Scalar Scalar;
219
- typedef typename XprType::CoeffReturnType CoeffReturnType;
220
- typedef typename TensorIndexTupleOp<ArgType>::CoeffReturnType TupleType;
221
- typedef typename TensorEvaluator<const TensorReductionOp<ReduceOp, Dims, const TensorIndexTupleOp<ArgType> >, Device>::Dimensions Dimensions;
222
- typedef typename TensorEvaluator<const TensorIndexTupleOp<ArgType> , Device>::Dimensions InputDimensions;
223
- static const int NumDims = internal::array_size<InputDimensions>::value;
224
- typedef array<Index, NumDims> StrideDims;
225
- typedef StorageMemory<CoeffReturnType, Device> Storage;
226
- typedef typename Storage::Type EvaluatorPointerType;
227
- typedef StorageMemory<TupleType, Device> TupleStorageMem;
228
-
229
- enum {
230
- IsAligned = /*TensorEvaluator<ArgType, Device>::IsAligned*/ false,
231
- PacketAccess = /*TensorEvaluator<ArgType, Device>::PacketAccess*/ false,
232
- BlockAccess = false,
233
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
234
- Layout = TensorEvaluator<const TensorReductionOp<ReduceOp, Dims, const TensorIndexTupleOp<ArgType> >, Device>::Layout,
235
- CoordAccess = false, // to be implemented
236
- RawAccess = false
237
- };
238
-
239
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
240
- typedef internal::TensorBlockNotImplemented TensorBlock;
241
- //===--------------------------------------------------------------------===//
242
-
243
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
244
- : m_orig_impl(op.expression(), device),
245
- m_impl(op.expression().index_tuples().reduce(op.reduce_dims(), op.reduce_op()), device),
246
- m_return_dim(op.return_dim())
247
- {
248
- gen_strides(m_orig_impl.dimensions(), m_strides);
249
- if (Layout == static_cast<int>(ColMajor)) {
250
- const Index total_size = internal::array_prod(m_orig_impl.dimensions());
251
- m_stride_mod = (m_return_dim < NumDims - 1) ? m_strides[m_return_dim + 1] : total_size;
252
- } else {
253
- const Index total_size = internal::array_prod(m_orig_impl.dimensions());
254
- m_stride_mod = (m_return_dim > 0) ? m_strides[m_return_dim - 1] : total_size;
255
- }
256
- // If m_return_dim is not a valid index, returns 1 or this can crash on Windows.
257
- m_stride_div = ((m_return_dim >= 0) &&
258
- (m_return_dim < static_cast<Index>(m_strides.size())))
259
- ? m_strides[m_return_dim] : 1;
260
- }
261
-
262
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const {
263
- return m_impl.dimensions();
264
- }
265
-
266
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType /*data*/) {
267
- m_impl.evalSubExprsIfNeeded(NULL);
268
- return true;
269
- }
270
- EIGEN_STRONG_INLINE void cleanup() {
271
- m_impl.cleanup();
272
- }
273
-
274
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const {
275
- const TupleType v = m_impl.coeff(index);
276
- return (m_return_dim < 0) ? v.first : (v.first % m_stride_mod) / m_stride_div;
277
- }
278
-
279
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
280
- #ifdef EIGEN_USE_SYCL
281
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
282
- m_impl.bind(cgh);
283
- m_orig_impl.bind(cgh);
284
- }
285
- #endif
286
-
287
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
288
- costPerCoeff(bool vectorized) const {
289
- const double compute_cost = 1.0 +
290
- (m_return_dim < 0 ? 0.0 : (TensorOpCost::ModCost<Index>() + TensorOpCost::DivCost<Index>()));
291
- return m_orig_impl.costPerCoeff(vectorized) +
292
- m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, compute_cost);
293
- }
294
-
295
- private:
296
- EIGEN_DEVICE_FUNC void gen_strides(const InputDimensions& dims, StrideDims& strides) {
297
- if (m_return_dim < 0) {
298
- return; // Won't be using the strides.
299
- }
300
- eigen_assert(m_return_dim < NumDims &&
301
- "Asking to convert index to a dimension outside of the rank");
302
-
303
- // Calculate m_stride_div and m_stride_mod, which are used to
304
- // calculate the value of an index w.r.t. the m_return_dim.
305
- if (Layout == static_cast<int>(ColMajor)) {
306
- strides[0] = 1;
307
- for (int i = 1; i < NumDims; ++i) {
308
- strides[i] = strides[i-1] * dims[i-1];
309
- }
310
- } else {
311
- strides[NumDims-1] = 1;
312
- for (int i = NumDims - 2; i >= 0; --i) {
313
- strides[i] = strides[i+1] * dims[i+1];
314
- }
315
- }
316
- }
317
-
318
- protected:
319
- TensorEvaluator<const TensorIndexTupleOp<ArgType>, Device> m_orig_impl;
320
- TensorEvaluator<const TensorReductionOp<ReduceOp, Dims, const TensorIndexTupleOp<ArgType> >, Device> m_impl;
321
- const Index m_return_dim;
322
- StrideDims m_strides;
323
- Index m_stride_mod;
324
- Index m_stride_div;
325
- };
326
-
327
- } // end namespace Eigen
328
-
329
- #endif // EIGEN_CXX11_TENSOR_TENSOR_ARG_MAX_H
@@ -1,247 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_ASSIGN_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_ASSIGN_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorAssign
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief The tensor assignment class.
19
- *
20
- * This class is represents the assignment of the values resulting from the evaluation of
21
- * the rhs expression to the memory locations denoted by the lhs expression.
22
- */
23
- namespace internal {
24
- template<typename LhsXprType, typename RhsXprType>
25
- struct traits<TensorAssignOp<LhsXprType, RhsXprType> >
26
- {
27
- typedef typename LhsXprType::Scalar Scalar;
28
- typedef typename traits<LhsXprType>::StorageKind StorageKind;
29
- typedef typename promote_index_type<typename traits<LhsXprType>::Index,
30
- typename traits<RhsXprType>::Index>::type Index;
31
- typedef typename LhsXprType::Nested LhsNested;
32
- typedef typename RhsXprType::Nested RhsNested;
33
- typedef typename remove_reference<LhsNested>::type _LhsNested;
34
- typedef typename remove_reference<RhsNested>::type _RhsNested;
35
- static const std::size_t NumDimensions = internal::traits<LhsXprType>::NumDimensions;
36
- static const int Layout = internal::traits<LhsXprType>::Layout;
37
- typedef typename traits<LhsXprType>::PointerType PointerType;
38
-
39
- enum {
40
- Flags = 0
41
- };
42
- };
43
-
44
- template<typename LhsXprType, typename RhsXprType>
45
- struct eval<TensorAssignOp<LhsXprType, RhsXprType>, Eigen::Dense>
46
- {
47
- typedef const TensorAssignOp<LhsXprType, RhsXprType>& type;
48
- };
49
-
50
- template<typename LhsXprType, typename RhsXprType>
51
- struct nested<TensorAssignOp<LhsXprType, RhsXprType>, 1, typename eval<TensorAssignOp<LhsXprType, RhsXprType> >::type>
52
- {
53
- typedef TensorAssignOp<LhsXprType, RhsXprType> type;
54
- };
55
-
56
- } // end namespace internal
57
-
58
-
59
-
60
- template<typename LhsXprType, typename RhsXprType>
61
- class TensorAssignOp : public TensorBase<TensorAssignOp<LhsXprType, RhsXprType> >
62
- {
63
- public:
64
- typedef typename Eigen::internal::traits<TensorAssignOp>::Scalar Scalar;
65
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
66
- typedef typename LhsXprType::CoeffReturnType CoeffReturnType;
67
- typedef typename Eigen::internal::nested<TensorAssignOp>::type Nested;
68
- typedef typename Eigen::internal::traits<TensorAssignOp>::StorageKind StorageKind;
69
- typedef typename Eigen::internal::traits<TensorAssignOp>::Index Index;
70
-
71
- static const int NumDims = Eigen::internal::traits<TensorAssignOp>::NumDimensions;
72
-
73
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorAssignOp(LhsXprType& lhs, const RhsXprType& rhs)
74
- : m_lhs_xpr(lhs), m_rhs_xpr(rhs) {}
75
-
76
- /** \returns the nested expressions */
77
- EIGEN_DEVICE_FUNC
78
- typename internal::remove_all<typename LhsXprType::Nested>::type&
79
- lhsExpression() const { return *((typename internal::remove_all<typename LhsXprType::Nested>::type*)&m_lhs_xpr); }
80
-
81
- EIGEN_DEVICE_FUNC
82
- const typename internal::remove_all<typename RhsXprType::Nested>::type&
83
- rhsExpression() const { return m_rhs_xpr; }
84
-
85
- protected:
86
- typename internal::remove_all<typename LhsXprType::Nested>::type& m_lhs_xpr;
87
- const typename internal::remove_all<typename RhsXprType::Nested>::type& m_rhs_xpr;
88
- };
89
-
90
-
91
- template<typename LeftArgType, typename RightArgType, typename Device>
92
- struct TensorEvaluator<const TensorAssignOp<LeftArgType, RightArgType>, Device>
93
- {
94
- typedef TensorAssignOp<LeftArgType, RightArgType> XprType;
95
- typedef typename XprType::Index Index;
96
- typedef typename XprType::Scalar Scalar;
97
- typedef typename XprType::CoeffReturnType CoeffReturnType;
98
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
99
- typedef typename TensorEvaluator<RightArgType, Device>::Dimensions Dimensions;
100
- typedef StorageMemory<CoeffReturnType, Device> Storage;
101
- typedef typename Storage::Type EvaluatorPointerType;
102
-
103
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
104
- static const int NumDims = XprType::NumDims;
105
-
106
- enum {
107
- IsAligned = int(TensorEvaluator<LeftArgType, Device>::IsAligned) &
108
- int(TensorEvaluator<RightArgType, Device>::IsAligned),
109
- PacketAccess = int(TensorEvaluator<LeftArgType, Device>::PacketAccess) &
110
- int(TensorEvaluator<RightArgType, Device>::PacketAccess),
111
- BlockAccess = int(TensorEvaluator<LeftArgType, Device>::BlockAccess) &
112
- int(TensorEvaluator<RightArgType, Device>::BlockAccess),
113
- PreferBlockAccess = int(TensorEvaluator<LeftArgType, Device>::PreferBlockAccess) |
114
- int(TensorEvaluator<RightArgType, Device>::PreferBlockAccess),
115
- Layout = TensorEvaluator<LeftArgType, Device>::Layout,
116
- RawAccess = TensorEvaluator<LeftArgType, Device>::RawAccess
117
- };
118
-
119
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
120
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
121
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
122
-
123
- typedef typename TensorEvaluator<const RightArgType, Device>::TensorBlock
124
- RightTensorBlock;
125
- //===--------------------------------------------------------------------===//
126
-
127
- TensorEvaluator(const XprType& op, const Device& device) :
128
- m_leftImpl(op.lhsExpression(), device),
129
- m_rightImpl(op.rhsExpression(), device)
130
- {
131
- EIGEN_STATIC_ASSERT(
132
- (static_cast<int>(TensorEvaluator<LeftArgType, Device>::Layout) ==
133
- static_cast<int>(TensorEvaluator<RightArgType, Device>::Layout)),
134
- YOU_MADE_A_PROGRAMMING_MISTAKE);
135
- }
136
-
137
- EIGEN_DEVICE_FUNC const Dimensions& dimensions() const
138
- {
139
- // The dimensions of the lhs and the rhs tensors should be equal to prevent
140
- // overflows and ensure the result is fully initialized.
141
- // TODO: use left impl instead if right impl dimensions are known at compile time.
142
- return m_rightImpl.dimensions();
143
- }
144
-
145
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
146
- eigen_assert(dimensions_match(m_leftImpl.dimensions(), m_rightImpl.dimensions()));
147
- m_leftImpl.evalSubExprsIfNeeded(NULL);
148
- // If the lhs provides raw access to its storage area (i.e. if m_leftImpl.data() returns a non
149
- // null value), attempt to evaluate the rhs expression in place. Returns true iff in place
150
- // evaluation isn't supported and the caller still needs to manually assign the values generated
151
- // by the rhs to the lhs.
152
- return m_rightImpl.evalSubExprsIfNeeded(m_leftImpl.data());
153
- }
154
-
155
- #ifdef EIGEN_USE_THREADS
156
- template <typename EvalSubExprsCallback>
157
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
158
- EvaluatorPointerType, EvalSubExprsCallback done) {
159
- m_leftImpl.evalSubExprsIfNeededAsync(nullptr, [this, done](bool) {
160
- m_rightImpl.evalSubExprsIfNeededAsync(
161
- m_leftImpl.data(), [done](bool need_assign) { done(need_assign); });
162
- });
163
- }
164
- #endif // EIGEN_USE_THREADS
165
-
166
- EIGEN_STRONG_INLINE void cleanup() {
167
- m_leftImpl.cleanup();
168
- m_rightImpl.cleanup();
169
- }
170
-
171
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void evalScalar(Index i) {
172
- m_leftImpl.coeffRef(i) = m_rightImpl.coeff(i);
173
- }
174
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void evalPacket(Index i) {
175
-
176
- const int LhsStoreMode = TensorEvaluator<LeftArgType, Device>::IsAligned ? Aligned : Unaligned;
177
- const int RhsLoadMode = TensorEvaluator<RightArgType, Device>::IsAligned ? Aligned : Unaligned;
178
- m_leftImpl.template writePacket<LhsStoreMode>(i, m_rightImpl.template packet<RhsLoadMode>(i));
179
- }
180
- EIGEN_DEVICE_FUNC CoeffReturnType coeff(Index index) const
181
- {
182
- return m_leftImpl.coeff(index);
183
- }
184
- template<int LoadMode>
185
- EIGEN_DEVICE_FUNC PacketReturnType packet(Index index) const
186
- {
187
- return m_leftImpl.template packet<LoadMode>(index);
188
- }
189
-
190
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
191
- costPerCoeff(bool vectorized) const {
192
- // We assume that evalPacket or evalScalar is called to perform the
193
- // assignment and account for the cost of the write here, but reduce left
194
- // cost by one load because we are using m_leftImpl.coeffRef.
195
- TensorOpCost left = m_leftImpl.costPerCoeff(vectorized);
196
- return m_rightImpl.costPerCoeff(vectorized) +
197
- TensorOpCost(
198
- numext::maxi(0.0, left.bytes_loaded() - sizeof(CoeffReturnType)),
199
- left.bytes_stored(), left.compute_cycles()) +
200
- TensorOpCost(0, sizeof(CoeffReturnType), 0, vectorized, PacketSize);
201
- }
202
-
203
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
204
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
205
- return internal::TensorBlockResourceRequirements::merge(
206
- m_leftImpl.getResourceRequirements(),
207
- m_rightImpl.getResourceRequirements());
208
- }
209
-
210
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void evalBlock(
211
- TensorBlockDesc& desc, TensorBlockScratch& scratch) {
212
- if (TensorEvaluator<LeftArgType, Device>::RawAccess &&
213
- m_leftImpl.data() != NULL) {
214
- // If destination has raw data access, we pass it as a potential
215
- // destination for a block descriptor evaluation.
216
- desc.template AddDestinationBuffer<Layout>(
217
- /*dst_base=*/m_leftImpl.data() + desc.offset(),
218
- /*dst_strides=*/internal::strides<Layout>(m_leftImpl.dimensions()));
219
- }
220
-
221
- RightTensorBlock block = m_rightImpl.block(desc, scratch, /*root_of_expr_ast=*/true);
222
- // If block was evaluated into a destination, there is no need to do assignment.
223
- if (block.kind() != internal::TensorBlockKind::kMaterializedInOutput) {
224
- m_leftImpl.writeBlock(desc, block);
225
- }
226
- block.cleanup();
227
- }
228
-
229
- #ifdef EIGEN_USE_SYCL
230
- // binding placeholder accessors to a command group handler for SYCL
231
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
232
- m_leftImpl.bind(cgh);
233
- m_rightImpl.bind(cgh);
234
- }
235
- #endif
236
-
237
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return m_leftImpl.data(); }
238
-
239
- private:
240
- TensorEvaluator<LeftArgType, Device> m_leftImpl;
241
- TensorEvaluator<RightArgType, Device> m_rightImpl;
242
- };
243
-
244
- }
245
-
246
-
247
- #endif // EIGEN_CXX11_TENSOR_TENSOR_ASSIGN_H