sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h

@@ -1,697 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2012 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SIMPLICIAL_CHOLESKY_H
-#define EIGEN_SIMPLICIAL_CHOLESKY_H
-
-namespace Eigen { 
-
-enum SimplicialCholeskyMode {
-  SimplicialCholeskyLLT,
-  SimplicialCholeskyLDLT
-};
-
-namespace internal {
-  template<typename CholMatrixType, typename InputMatrixType>
-  struct simplicial_cholesky_grab_input {
-    typedef CholMatrixType const * ConstCholMatrixPtr;
-    static void run(const InputMatrixType& input, ConstCholMatrixPtr &pmat, CholMatrixType &tmp)
-    {
-      tmp = input;
-      pmat = &tmp;
-    }
-  };
-  
-  template<typename MatrixType>
-  struct simplicial_cholesky_grab_input<MatrixType,MatrixType> {
-    typedef MatrixType const * ConstMatrixPtr;
-    static void run(const MatrixType& input, ConstMatrixPtr &pmat, MatrixType &/*tmp*/)
-    {
-      pmat = &input;
-    }
-  };
-} // end namespace internal
-
-/** \ingroup SparseCholesky_Module
-  * \brief A base class for direct sparse Cholesky factorizations
-  *
-  * This is a base class for LL^T and LDL^T Cholesky factorizations of sparse matrices that are
-  * selfadjoint and positive definite. These factorizations allow for solving A.X = B where
-  * X and B can be either dense or sparse.
-  * 
-  * In order to reduce the fill-in, a symmetric permutation P is applied prior to the factorization
-  * such that the factorized matrix is P A P^-1.
-  *
-  * \tparam Derived the type of the derived class, that is the actual factorization type.
-  *
-  */
-template<typename Derived>
-class SimplicialCholeskyBase : public SparseSolverBase<Derived>
-{
-    typedef SparseSolverBase<Derived> Base;
-    using Base::m_isInitialized;
-    
-  public:
-    typedef typename internal::traits<Derived>::MatrixType MatrixType;
-    typedef typename internal::traits<Derived>::OrderingType OrderingType;
-    enum { UpLo = internal::traits<Derived>::UpLo };
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    typedef SparseMatrix<Scalar,ColMajor,StorageIndex> CholMatrixType;
-    typedef CholMatrixType const * ConstCholMatrixPtr;
-    typedef Matrix<Scalar,Dynamic,1> VectorType;
-    typedef Matrix<StorageIndex,Dynamic,1> VectorI;
-
-    enum {
-      ColsAtCompileTime = MatrixType::ColsAtCompileTime,
-      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
-    };
-
-  public:
-    
-    using Base::derived;
-
-    /** Default constructor */
-    SimplicialCholeskyBase()
-      : m_info(Success),
-        m_factorizationIsOk(false),
-        m_analysisIsOk(false),
-        m_shiftOffset(0),
-        m_shiftScale(1)
-    {}
-
-    explicit SimplicialCholeskyBase(const MatrixType& matrix)
-      : m_info(Success),
-        m_factorizationIsOk(false),
-        m_analysisIsOk(false),
-        m_shiftOffset(0),
-        m_shiftScale(1)
-    {
-      derived().compute(matrix);
-    }
-
-    ~SimplicialCholeskyBase()
-    {
-    }
-
-    Derived& derived() { return *static_cast<Derived*>(this); }
-    const Derived& derived() const { return *static_cast<const Derived*>(this); }
-    
-    inline Index cols() const { return m_matrix.cols(); }
-    inline Index rows() const { return m_matrix.rows(); }
-    
-    /** \brief Reports whether previous computation was successful.
-      *
-      * \returns \c Success if computation was successful,
-      *          \c NumericalIssue if the matrix.appears to be negative.
-      */
-    ComputationInfo info() const
-    {
-      eigen_assert(m_isInitialized && "Decomposition is not initialized.");
-      return m_info;
-    }
-    
-    /** \returns the permutation P
-      * \sa permutationPinv() */
-    const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& permutationP() const
-    { return m_P; }
-    
-    /** \returns the inverse P^-1 of the permutation P
-      * \sa permutationP() */
-    const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& permutationPinv() const
-    { return m_Pinv; }
-
-    /** Sets the shift parameters that will be used to adjust the diagonal coefficients during the numerical factorization.
-      *
-      * During the numerical factorization, the diagonal coefficients are transformed by the following linear model:\n
-      * \c d_ii = \a offset + \a scale * \c d_ii
-      *
-      * The default is the identity transformation with \a offset=0, and \a scale=1.
-      *
-      * \returns a reference to \c *this.
-      */
-    Derived& setShift(const RealScalar& offset, const RealScalar& scale = 1)
-    {
-      m_shiftOffset = offset;
-      m_shiftScale = scale;
-      return derived();
-    }
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-    /** \internal */
-    template<typename Stream>
-    void dumpMemory(Stream& s)
-    {
-      int total = 0;
-      s << "  L:        " << ((total+=(m_matrix.cols()+1) * sizeof(int) + m_matrix.nonZeros()*(sizeof(int)+sizeof(Scalar))) >> 20) << "Mb" << "\n";
-      s << "  diag:     " << ((total+=m_diag.size() * sizeof(Scalar)) >> 20) << "Mb" << "\n";
-      s << "  tree:     " << ((total+=m_parent.size() * sizeof(int)) >> 20) << "Mb" << "\n";
-      s << "  nonzeros: " << ((total+=m_nonZerosPerCol.size() * sizeof(int)) >> 20) << "Mb" << "\n";
-      s << "  perm:     " << ((total+=m_P.size() * sizeof(int)) >> 20) << "Mb" << "\n";
-      s << "  perm^-1:  " << ((total+=m_Pinv.size() * sizeof(int)) >> 20) << "Mb" << "\n";
-      s << "  TOTAL:    " << (total>> 20) << "Mb" << "\n";
-    }
-
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const
-    {
-      eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
-      eigen_assert(m_matrix.rows()==b.rows());
-
-      if(m_info!=Success)
-        return;
-
-      if(m_P.size()>0)
-        dest = m_P * b;
-      else
-        dest = b;
-
-      if(m_matrix.nonZeros()>0) // otherwise L==I
-        derived().matrixL().solveInPlace(dest);
-
-      if(m_diag.size()>0)
-        dest = m_diag.asDiagonal().inverse() * dest;
-
-      if (m_matrix.nonZeros()>0) // otherwise U==I
-        derived().matrixU().solveInPlace(dest);
-
-      if(m_P.size()>0)
-        dest = m_Pinv * dest;
-    }
-    
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const SparseMatrixBase<Rhs> &b, SparseMatrixBase<Dest> &dest) const
-    {
-      internal::solve_sparse_through_dense_panels(derived(), b, dest);
-    }
-
-#endif // EIGEN_PARSED_BY_DOXYGEN
-
-  protected:
-    
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    template<bool DoLDLT>
-    void compute(const MatrixType& matrix)
-    {
-      eigen_assert(matrix.rows()==matrix.cols());
-      Index size = matrix.cols();
-      CholMatrixType tmp(size,size);
-      ConstCholMatrixPtr pmat;
-      ordering(matrix, pmat, tmp);
-      analyzePattern_preordered(*pmat, DoLDLT);
-      factorize_preordered<DoLDLT>(*pmat);
-    }
-    
-    template<bool DoLDLT>
-    void factorize(const MatrixType& a)
-    {
-      eigen_assert(a.rows()==a.cols());
-      Index size = a.cols();
-      CholMatrixType tmp(size,size);
-      ConstCholMatrixPtr pmat;
-      
-      if(m_P.size() == 0 && (int(UpLo) & int(Upper)) == Upper)
-      {
-        // If there is no ordering, try to directly use the input matrix without any copy
-        internal::simplicial_cholesky_grab_input<CholMatrixType,MatrixType>::run(a, pmat, tmp);
-      }
-      else
-      {
-        tmp.template selfadjointView<Upper>() = a.template selfadjointView<UpLo>().twistedBy(m_P);
-        pmat = &tmp;
-      }
-      
-      factorize_preordered<DoLDLT>(*pmat);
-    }
-
-    template<bool DoLDLT>
-    void factorize_preordered(const CholMatrixType& a);
-
-    void analyzePattern(const MatrixType& a, bool doLDLT)
-    {
-      eigen_assert(a.rows()==a.cols());
-      Index size = a.cols();
-      CholMatrixType tmp(size,size);
-      ConstCholMatrixPtr pmat;
-      ordering(a, pmat, tmp);
-      analyzePattern_preordered(*pmat,doLDLT);
-    }
-    void analyzePattern_preordered(const CholMatrixType& a, bool doLDLT);
-    
-    void ordering(const MatrixType& a, ConstCholMatrixPtr &pmat, CholMatrixType& ap);
-
-    /** keeps off-diagonal entries; drops diagonal entries */
-    struct keep_diag {
-      inline bool operator() (const Index& row, const Index& col, const Scalar&) const
-      {
-        return row!=col;
-      }
-    };
-
-    mutable ComputationInfo m_info;
-    bool m_factorizationIsOk;
-    bool m_analysisIsOk;
-    
-    CholMatrixType m_matrix;
-    VectorType m_diag;                                // the diagonal coefficients (LDLT mode)
-    VectorI m_parent;                                 // elimination tree
-    VectorI m_nonZerosPerCol;
-    PermutationMatrix<Dynamic,Dynamic,StorageIndex> m_P;     // the permutation
-    PermutationMatrix<Dynamic,Dynamic,StorageIndex> m_Pinv;  // the inverse permutation
-
-    RealScalar m_shiftOffset;
-    RealScalar m_shiftScale;
-};
-
-template<typename _MatrixType, int _UpLo = Lower, typename _Ordering = AMDOrdering<typename _MatrixType::StorageIndex> > class SimplicialLLT;
-template<typename _MatrixType, int _UpLo = Lower, typename _Ordering = AMDOrdering<typename _MatrixType::StorageIndex> > class SimplicialLDLT;
-template<typename _MatrixType, int _UpLo = Lower, typename _Ordering = AMDOrdering<typename _MatrixType::StorageIndex> > class SimplicialCholesky;
-
-namespace internal {
-
-template<typename _MatrixType, int _UpLo, typename _Ordering> struct traits<SimplicialLLT<_MatrixType,_UpLo,_Ordering> >
-{
-  typedef _MatrixType MatrixType;
-  typedef _Ordering OrderingType;
-  enum { UpLo = _UpLo };
-  typedef typename MatrixType::Scalar                         Scalar;
-  typedef typename MatrixType::StorageIndex                   StorageIndex;
-  typedef SparseMatrix<Scalar, ColMajor, StorageIndex>        CholMatrixType;
-  typedef TriangularView<const CholMatrixType, Eigen::Lower>  MatrixL;
-  typedef TriangularView<const typename CholMatrixType::AdjointReturnType, Eigen::Upper>   MatrixU;
-  static inline MatrixL getL(const CholMatrixType& m) { return MatrixL(m); }
-  static inline MatrixU getU(const CholMatrixType& m) { return MatrixU(m.adjoint()); }
-};
-
-template<typename _MatrixType,int _UpLo, typename _Ordering> struct traits<SimplicialLDLT<_MatrixType,_UpLo,_Ordering> >
-{
-  typedef _MatrixType MatrixType;
-  typedef _Ordering OrderingType;
-  enum { UpLo = _UpLo };
-  typedef typename MatrixType::Scalar                             Scalar;
-  typedef typename MatrixType::StorageIndex                       StorageIndex;
-  typedef SparseMatrix<Scalar, ColMajor, StorageIndex>            CholMatrixType;
-  typedef TriangularView<const CholMatrixType, Eigen::UnitLower>  MatrixL;
-  typedef TriangularView<const typename CholMatrixType::AdjointReturnType, Eigen::UnitUpper> MatrixU;
-  static inline MatrixL getL(const CholMatrixType& m) { return MatrixL(m); }
-  static inline MatrixU getU(const CholMatrixType& m) { return MatrixU(m.adjoint()); }
-};
-
-template<typename _MatrixType, int _UpLo, typename _Ordering> struct traits<SimplicialCholesky<_MatrixType,_UpLo,_Ordering> >
-{
-  typedef _MatrixType MatrixType;
-  typedef _Ordering OrderingType;
-  enum { UpLo = _UpLo };
-};
-
-}
-
-/** \ingroup SparseCholesky_Module
-  * \class SimplicialLLT
-  * \brief A direct sparse LLT Cholesky factorizations
-  *
-  * This class provides a LL^T Cholesky factorizations of sparse matrices that are
-  * selfadjoint and positive definite. The factorization allows for solving A.X = B where
-  * X and B can be either dense or sparse.
-  * 
-  * In order to reduce the fill-in, a symmetric permutation P is applied prior to the factorization
-  * such that the factorized matrix is P A P^-1.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  * \tparam _Ordering The ordering method to use, either AMDOrdering<> or NaturalOrdering<>. Default is AMDOrdering<>
-  *
-  * \implsparsesolverconcept
-  *
-  * \sa class SimplicialLDLT, class AMDOrdering, class NaturalOrdering
-  */
-template<typename _MatrixType, int _UpLo, typename _Ordering>
-    class SimplicialLLT : public SimplicialCholeskyBase<SimplicialLLT<_MatrixType,_UpLo,_Ordering> >
-{
-public:
-    typedef _MatrixType MatrixType;
-    enum { UpLo = _UpLo };
-    typedef SimplicialCholeskyBase<SimplicialLLT> Base;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    typedef SparseMatrix<Scalar,ColMajor,Index> CholMatrixType;
-    typedef Matrix<Scalar,Dynamic,1> VectorType;
-    typedef internal::traits<SimplicialLLT> Traits;
-    typedef typename Traits::MatrixL  MatrixL;
-    typedef typename Traits::MatrixU  MatrixU;
-public:
-    /** Default constructor */
-    SimplicialLLT() : Base() {}
-    /** Constructs and performs the LLT factorization of \a matrix */
-    explicit SimplicialLLT(const MatrixType& matrix)
-        : Base(matrix) {}
-
-    /** \returns an expression of the factor L */
-    inline const MatrixL matrixL() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial LLT not factorized");
-        return Traits::getL(Base::m_matrix);
-    }
-
-    /** \returns an expression of the factor U (= L^*) */
-    inline const MatrixU matrixU() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial LLT not factorized");
-        return Traits::getU(Base::m_matrix);
-    }
-    
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    SimplicialLLT& compute(const MatrixType& matrix)
-    {
-      Base::template compute<false>(matrix);
-      return *this;
-    }
-
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      *
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& a)
-    {
-      Base::analyzePattern(a, false);
-    }
-
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must has the same sparcity than the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& a)
-    {
-      Base::template factorize<false>(a);
-    }
-
-    /** \returns the determinant of the underlying matrix from the current factorization */
-    Scalar determinant() const
-    {
-      Scalar detL = Base::m_matrix.diagonal().prod();
-      return numext::abs2(detL);
-    }
-};
-
-/** \ingroup SparseCholesky_Module
-  * \class SimplicialLDLT
-  * \brief A direct sparse LDLT Cholesky factorizations without square root.
-  *
-  * This class provides a LDL^T Cholesky factorizations without square root of sparse matrices that are
-  * selfadjoint and positive definite. The factorization allows for solving A.X = B where
-  * X and B can be either dense or sparse.
-  * 
-  * In order to reduce the fill-in, a symmetric permutation P is applied prior to the factorization
-  * such that the factorized matrix is P A P^-1.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
-  *               or Upper. Default is Lower.
-  * \tparam _Ordering The ordering method to use, either AMDOrdering<> or NaturalOrdering<>. Default is AMDOrdering<>
-  *
-  * \implsparsesolverconcept
-  *
-  * \sa class SimplicialLLT, class AMDOrdering, class NaturalOrdering
-  */
-template<typename _MatrixType, int _UpLo, typename _Ordering>
-    class SimplicialLDLT : public SimplicialCholeskyBase<SimplicialLDLT<_MatrixType,_UpLo,_Ordering> >
-{
-public:
-    typedef _MatrixType MatrixType;
-    enum { UpLo = _UpLo };
-    typedef SimplicialCholeskyBase<SimplicialLDLT> Base;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    typedef SparseMatrix<Scalar,ColMajor,StorageIndex> CholMatrixType;
-    typedef Matrix<Scalar,Dynamic,1> VectorType;
-    typedef internal::traits<SimplicialLDLT> Traits;
-    typedef typename Traits::MatrixL  MatrixL;
-    typedef typename Traits::MatrixU  MatrixU;
-public:
-    /** Default constructor */
-    SimplicialLDLT() : Base() {}
-
-    /** Constructs and performs the LLT factorization of \a matrix */
-    explicit SimplicialLDLT(const MatrixType& matrix)
-        : Base(matrix) {}
-
-    /** \returns a vector expression of the diagonal D */
-    inline const VectorType vectorD() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial LDLT not factorized");
-        return Base::m_diag;
-    }
-    /** \returns an expression of the factor L */
-    inline const MatrixL matrixL() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial LDLT not factorized");
-        return Traits::getL(Base::m_matrix);
-    }
-
-    /** \returns an expression of the factor U (= L^*) */
-    inline const MatrixU matrixU() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial LDLT not factorized");
-        return Traits::getU(Base::m_matrix);
-    }
-
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    SimplicialLDLT& compute(const MatrixType& matrix)
-    {
-      Base::template compute<true>(matrix);
-      return *this;
-    }
-    
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      *
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& a)
-    {
-      Base::analyzePattern(a, true);
-    }
-
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must has the same sparcity than the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& a)
-    {
-      Base::template factorize<true>(a);
-    }
-
-    /** \returns the determinant of the underlying matrix from the current factorization */
-    Scalar determinant() const
-    {
-      return Base::m_diag.prod();
-    }
-};
-
-/** \deprecated use SimplicialLDLT or class SimplicialLLT
-  * \ingroup SparseCholesky_Module
-  * \class SimplicialCholesky
-  *
-  * \sa class SimplicialLDLT, class SimplicialLLT
-  */
-template<typename _MatrixType, int _UpLo, typename _Ordering>
-    class SimplicialCholesky : public SimplicialCholeskyBase<SimplicialCholesky<_MatrixType,_UpLo,_Ordering> >
-{
-public:
-    typedef _MatrixType MatrixType;
-    enum { UpLo = _UpLo };
-    typedef SimplicialCholeskyBase<SimplicialCholesky> Base;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    typedef SparseMatrix<Scalar,ColMajor,StorageIndex> CholMatrixType;
-    typedef Matrix<Scalar,Dynamic,1> VectorType;
-    typedef internal::traits<SimplicialCholesky> Traits;
-    typedef internal::traits<SimplicialLDLT<MatrixType,UpLo> > LDLTTraits;
-    typedef internal::traits<SimplicialLLT<MatrixType,UpLo>  > LLTTraits;
-  public:
-    SimplicialCholesky() : Base(), m_LDLT(true) {}
-
-    explicit SimplicialCholesky(const MatrixType& matrix)
-      : Base(), m_LDLT(true)
-    {
-      compute(matrix);
-    }
-
-    SimplicialCholesky& setMode(SimplicialCholeskyMode mode)
-    {
-      switch(mode)
-      {
-      case SimplicialCholeskyLLT:
-        m_LDLT = false;
-        break;
-      case SimplicialCholeskyLDLT:
-        m_LDLT = true;
-        break;
-      default:
-        break;
-      }
-
-      return *this;
-    }
-
-    inline const VectorType vectorD() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial Cholesky not factorized");
-        return Base::m_diag;
-    }
-    inline const CholMatrixType rawMatrix() const {
-        eigen_assert(Base::m_factorizationIsOk && "Simplicial Cholesky not factorized");
-        return Base::m_matrix;
-    }
-    
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    SimplicialCholesky& compute(const MatrixType& matrix)
-    {
-      if(m_LDLT)
-        Base::template compute<true>(matrix);
-      else
-        Base::template compute<false>(matrix);
-      return *this;
-    }
-
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      *
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& a)
-    {
-      Base::analyzePattern(a, m_LDLT);
-    }
-
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must has the same sparcity than the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& a)
-    {
-      if(m_LDLT)
-        Base::template factorize<true>(a);
-      else
-        Base::template factorize<false>(a);
-    }
-
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const
-    {
-      eigen_assert(Base::m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
-      eigen_assert(Base::m_matrix.rows()==b.rows());
-
-      if(Base::m_info!=Success)
-        return;
-
-      if(Base::m_P.size()>0)
-        dest = Base::m_P * b;
-      else
-        dest = b;
-
-      if(Base::m_matrix.nonZeros()>0) // otherwise L==I
-      {
-        if(m_LDLT)
-          LDLTTraits::getL(Base::m_matrix).solveInPlace(dest);
-        else
-          LLTTraits::getL(Base::m_matrix).solveInPlace(dest);
-      }
-
-      if(Base::m_diag.size()>0)
-        dest = Base::m_diag.real().asDiagonal().inverse() * dest;
-
-      if (Base::m_matrix.nonZeros()>0) // otherwise I==I
-      {
-        if(m_LDLT)
-          LDLTTraits::getU(Base::m_matrix).solveInPlace(dest);
-        else
-          LLTTraits::getU(Base::m_matrix).solveInPlace(dest);
-      }
-
-      if(Base::m_P.size()>0)
-        dest = Base::m_Pinv * dest;
-    }
-    
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const SparseMatrixBase<Rhs> &b, SparseMatrixBase<Dest> &dest) const
-    {
-      internal::solve_sparse_through_dense_panels(*this, b, dest);
-    }
-    
-    Scalar determinant() const
-    {
-      if(m_LDLT)
-      {
-        return Base::m_diag.prod();
-      }
-      else
-      {
-        Scalar detL = Diagonal<const CholMatrixType>(Base::m_matrix).prod();
-        return numext::abs2(detL);
-      }
-    }
-    
-  protected:
-    bool m_LDLT;
-};
-
-template<typename Derived>
-void SimplicialCholeskyBase<Derived>::ordering(const MatrixType& a, ConstCholMatrixPtr &pmat, CholMatrixType& ap)
-{
-  eigen_assert(a.rows()==a.cols());
-  const Index size = a.rows();
-  pmat = &ap;
-  // Note that ordering methods compute the inverse permutation
-  if(!internal::is_same<OrderingType,NaturalOrdering<Index> >::value)
-  {
-    {
-      CholMatrixType C;
-      C = a.template selfadjointView<UpLo>();
-      
-      OrderingType ordering;
-      ordering(C,m_Pinv);
-    }
-
-    if(m_Pinv.size()>0) m_P = m_Pinv.inverse();
-    else                m_P.resize(0);
-    
-    ap.resize(size,size);
-    ap.template selfadjointView<Upper>() = a.template selfadjointView<UpLo>().twistedBy(m_P);
-  }
-  else
-  {
-    m_Pinv.resize(0);
-    m_P.resize(0);
-    if(int(UpLo)==int(Lower) || MatrixType::IsRowMajor)
-    {
-      // we have to transpose the lower part to to the upper one
-      ap.resize(size,size);
-      ap.template selfadjointView<Upper>() = a.template selfadjointView<UpLo>();
-    }
-    else
-      internal::simplicial_cholesky_grab_input<CholMatrixType,MatrixType>::run(a, pmat, ap);
-  }  
-}
-
-} // end namespace Eigen
-
-#endif // EIGEN_SIMPLICIAL_CHOLESKY_H