sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -9,8 +9,8 @@
9
9
  * The full license is in the file LICENSE, distributed with this software. *
10
10
  ****************************************************************************/
11
11
 
12
- #ifndef XSIMD_AVX512_DQHPP
13
- #define XSIMD_AVX512_D_HPP
12
+ #ifndef XSIMD_AVX512DQ_HPP
13
+ #define XSIMD_AVX512DQ_HPP
14
14
 
15
15
  #include "../types/xsimd_avx512dq_register.hpp"
16
16
 
@@ -47,12 +47,12 @@ namespace xsimd
47
47
 
48
48
  // bitwise_not
49
49
  template <class A>
50
- XSIMD_INLINE batch<float, A> bitwise_not(batch<float, A> const& self, requires_arch<avx512f>) noexcept
50
+ XSIMD_INLINE batch<float, A> bitwise_not(batch<float, A> const& self, requires_arch<avx512dq>) noexcept
51
51
  {
52
52
  return _mm512_xor_ps(self, _mm512_castsi512_ps(_mm512_set1_epi32(-1)));
53
53
  }
54
54
  template <class A>
55
- XSIMD_INLINE batch<double, A> bitwise_not(batch<double, A> const& self, requires_arch<avx512f>) noexcept
55
+ XSIMD_INLINE batch<double, A> bitwise_not(batch<double, A> const& self, requires_arch<avx512dq>) noexcept
56
56
  {
57
57
  return _mm512_xor_pd(self, _mm512_castsi512_pd(_mm512_set1_epi32(-1)));
58
58
  }
@@ -96,7 +96,7 @@ namespace xsimd
96
96
  // tmp1 = [a0..8, b0..8]
97
97
  // tmp2 = [a8..f, b8..f]
98
98
  #define XSIMD_AVX512_HADDP_STEP1(I, a, b) \
99
- batch<float, avx512f> res##I; \
99
+ batch<float, avx512dq> res##I; \
100
100
  { \
101
101
  auto tmp1 = _mm512_shuffle_f32x4(a, b, _MM_SHUFFLE(1, 0, 1, 0)); \
102
102
  auto tmp2 = _mm512_shuffle_f32x4(a, b, _MM_SHUFFLE(3, 2, 3, 2)); \
@@ -180,7 +180,7 @@ namespace xsimd
180
180
 
181
181
  // reduce_add
182
182
  template <class A>
183
- XSIMD_INLINE float reduce_add(batch<float, A> const& rhs, requires_arch<avx512f>) noexcept
183
+ XSIMD_INLINE float reduce_add(batch<float, A> const& rhs, requires_arch<avx512dq>) noexcept
184
184
  {
185
185
  __m256 tmp1 = _mm512_extractf32x8_ps(rhs, 1);
186
186
  __m256 tmp2 = _mm512_extractf32x8_ps(rhs, 0);
@@ -188,11 +188,43 @@ namespace xsimd
188
188
  return reduce_add(batch<float, avx2>(res1), avx2 {});
189
189
  }
190
190
 
191
+ // reduce_mul
192
+ template <class A>
193
+ XSIMD_INLINE float reduce_mul(batch<float, A> const& rhs, requires_arch<avx512dq>) noexcept
194
+ {
195
+ __m256 tmp1 = _mm512_extractf32x8_ps(rhs, 1);
196
+ __m256 tmp2 = _mm512_extractf32x8_ps(rhs, 0);
197
+ __m256 res1 = _mm256_mul_ps(tmp1, tmp2);
198
+ return reduce_mul(batch<float, avx2>(res1), avx2 {});
199
+ }
200
+
201
+ // swizzle constant mask
202
+ template <class A, uint32_t V0, uint32_t V1, uint32_t V2, uint32_t V3, uint32_t V4, uint32_t V5, uint32_t V6, uint32_t V7,
203
+ uint32_t V8, uint32_t V9, uint32_t V10, uint32_t V11, uint32_t V12, uint32_t V13, uint32_t V14, uint32_t V15>
204
+ XSIMD_INLINE batch<float, A> swizzle(batch<float, A> const& self,
205
+ batch_constant<uint32_t, A, V0, V1, V2, V3, V4, V5, V6, V7, V8, V9, V10, V11, V12, V13, V14, V15> mask,
206
+ requires_arch<avx512dq>) noexcept
207
+ {
208
+ constexpr bool dup_lo = detail::is_dup_lo(mask);
209
+ constexpr bool dup_hi = detail::is_dup_hi(mask);
210
+
211
+ XSIMD_IF_CONSTEXPR(dup_lo || dup_hi)
212
+ {
213
+ const batch<float, avx2> half = _mm512_extractf32x8_ps(self, dup_lo ? 0 : 1);
214
+ constexpr typename std::conditional<dup_lo, batch_constant<uint32_t, avx2, V0 % 8, V1 % 8, V2 % 8, V3 % 8, V4 % 8, V5 % 8, V6 % 8, V7 % 8>,
215
+ batch_constant<uint32_t, avx2, V8 % 8, V9 % 8, V10 % 8, V11 % 8, V12 % 8, V13 % 8, V14 % 8, V15 % 8>>::type half_mask {};
216
+ auto permuted = swizzle(half, half_mask, avx2 {});
217
+ // merge the two slices into an AVX512F register:
218
+ return _mm512_broadcast_f32x8(permuted); // duplicates the 256-bit perm into both halves
219
+ }
220
+ return swizzle(self, mask, avx512f {});
221
+ }
222
+
191
223
  // convert
192
224
  namespace detail
193
225
  {
194
226
  template <class A>
195
- XSIMD_INLINE batch<double, A> fast_cast(batch<int64_t, A> const& x, batch<double, A> const&, requires_arch<avx512dq>) noexcept
227
+ XSIMD_INLINE batch<double, A> fast_cast(batch<int64_t, A> const& self, batch<double, A> const&, requires_arch<avx512dq>) noexcept
196
228
  {
197
229
  return _mm512_cvtepi64_pd(self);
198
230
  }
@@ -32,6 +32,8 @@ namespace xsimd
32
32
  XSIMD_INLINE batch<T, A> incr_if(batch<T, A> const& self, Mask const& mask, requires_arch<common>) noexcept;
33
33
  template <class A, class T, size_t I>
34
34
  XSIMD_INLINE batch<T, A> insert(batch<T, A> const& self, T val, index<I>, requires_arch<common>) noexcept;
35
+ template <class A, class T, class ITy, ITy... Is>
36
+ XSIMD_INLINE batch<T, A> swizzle(batch<T, A> const& self, batch_constant<ITy, A, Is...>, requires_arch<common>) noexcept;
35
37
  template <class A>
36
38
  XSIMD_INLINE void transpose(batch<uint16_t, A>* matrix_begin, batch<uint16_t, A>* matrix_end, requires_arch<common>) noexcept;
37
39
  template <class A>
@@ -562,6 +564,100 @@ namespace xsimd
562
564
  }
563
565
  }
564
566
 
567
+ // rotl
568
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
569
+ XSIMD_INLINE batch<T, A> rotl(batch<T, A> const& self, batch<T, A> const& other, requires_arch<avx512f>) noexcept
570
+ {
571
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
572
+ {
573
+ return _mm512_rolv_epi32(self, other);
574
+ }
575
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
576
+ {
577
+ return _mm512_rolv_epi64(self, other);
578
+ }
579
+ return detail::fwd_to_avx([](__m256i s, __m256i o) noexcept
580
+ { return rotl(batch<T, avx2>(s), batch<T, avx2>(o), avx2 {}); },
581
+ self, other);
582
+ }
583
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
584
+ XSIMD_INLINE batch<T, A> rotl(batch<T, A> const& self, int32_t other, requires_arch<avx512f>) noexcept
585
+ {
586
+ return rotl(self, batch<T, A>(other), A {});
587
+ }
588
+ template <size_t count, class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
589
+ XSIMD_INLINE batch<T, A> rotl(batch<T, A> const& self, requires_arch<avx512f>) noexcept
590
+ {
591
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
592
+ static_assert(count < bits, "Count must be less than the number of bits in T");
593
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
594
+ {
595
+ return _mm512_rol_epi32(self, count);
596
+ }
597
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
598
+ {
599
+ return _mm512_rol_epi64(self, count);
600
+ }
601
+
602
+ return detail::fwd_to_avx([](__m256i s) noexcept
603
+ { return rotl<count>(batch<T, avx2>(s), avx2 {}); },
604
+ self);
605
+ }
606
+
607
+ // rotr
608
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
609
+ XSIMD_INLINE batch<T, A> rotr(batch<T, A> const& self, batch<T, A> const& other, requires_arch<avx512f>) noexcept
610
+ {
611
+ XSIMD_IF_CONSTEXPR(sizeof(T) < 4)
612
+ {
613
+ return detail::fwd_to_avx([](__m256i s, __m256i o) noexcept
614
+ { return rotr(batch<T, avx2>(s), batch<T, avx2>(o), avx2 {}); },
615
+ self, other);
616
+ }
617
+ XSIMD_IF_CONSTEXPR(std::is_unsigned<T>::value)
618
+ {
619
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
620
+ {
621
+ return _mm512_rorv_epi32(self, other);
622
+ }
623
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
624
+ {
625
+ return _mm512_rorv_epi64(self, other);
626
+ }
627
+ }
628
+ return rotr(self, other, common {});
629
+ }
630
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
631
+ XSIMD_INLINE batch<T, A> rotr(batch<T, A> const& self, int32_t other, requires_arch<avx512f>) noexcept
632
+ {
633
+ return rotr(self, batch<T, A>(other), A {});
634
+ }
635
+
636
+ template <size_t count, class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
637
+ XSIMD_INLINE batch<T, A> rotr(batch<T, A> const& self, requires_arch<avx512f>) noexcept
638
+ {
639
+ constexpr auto bits = std::numeric_limits<T>::digits + std::numeric_limits<T>::is_signed;
640
+ static_assert(count < bits, "Count must be less than the number of bits in T");
641
+ XSIMD_IF_CONSTEXPR(sizeof(T) < 4)
642
+ {
643
+ return detail::fwd_to_avx([](__m256i s) noexcept
644
+ { return rotr<count>(batch<T, avx2>(s), avx2 {}); },
645
+ self);
646
+ }
647
+ XSIMD_IF_CONSTEXPR(std::is_unsigned<T>::value)
648
+ {
649
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
650
+ {
651
+ return _mm512_ror_epi32(self, count);
652
+ }
653
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
654
+ {
655
+ return _mm512_ror_epi64(self, count);
656
+ }
657
+ }
658
+ return rotr<count>(self, common {});
659
+ }
660
+
565
661
  // bitwise_xor
566
662
  template <class A>
567
663
  XSIMD_INLINE batch<float, A> bitwise_xor(batch<float, A> const& self, batch<float, A> const& other, requires_arch<avx512f>) noexcept
@@ -578,7 +674,7 @@ namespace xsimd
578
674
  XSIMD_INLINE batch_bool<T, A> bitwise_xor(batch_bool<T, A> const& self, batch_bool<T, A> const& other, requires_arch<avx512f>) noexcept
579
675
  {
580
676
  using register_type = typename batch_bool<T, A>::register_type;
581
- return register_type(self.data | other.data);
677
+ return register_type(self.data ^ other.data);
582
678
  }
583
679
 
584
680
  template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
@@ -900,6 +996,18 @@ namespace xsimd
900
996
  {
901
997
  return _mm512_fmsub_pd(x, y, z);
902
998
  }
999
+ // fmas
1000
+ template <class A>
1001
+ XSIMD_INLINE batch<float, A> fmas(batch<float, A> const& x, batch<float, A> const& y, batch<float, A> const& z, requires_arch<avx512f>) noexcept
1002
+ {
1003
+ return _mm512_fmaddsub_ps(x, y, z);
1004
+ }
1005
+
1006
+ template <class A>
1007
+ XSIMD_INLINE batch<double, A> fmas(batch<double, A> const& x, batch<double, A> const& y, batch<double, A> const& z, requires_arch<avx512f>) noexcept
1008
+ {
1009
+ return _mm512_fmaddsub_pd(x, y, z);
1010
+ }
903
1011
 
904
1012
  // from bool
905
1013
  template <class A, class T>
@@ -1312,12 +1420,12 @@ namespace xsimd
1312
1420
  template <class A>
1313
1421
  XSIMD_INLINE batch<float, A> max(batch<float, A> const& self, batch<float, A> const& other, requires_arch<avx512f>) noexcept
1314
1422
  {
1315
- return _mm512_max_ps(self, other);
1423
+ return _mm512_max_ps(other, self);
1316
1424
  }
1317
1425
  template <class A>
1318
1426
  XSIMD_INLINE batch<double, A> max(batch<double, A> const& self, batch<double, A> const& other, requires_arch<avx512f>) noexcept
1319
1427
  {
1320
- return _mm512_max_pd(self, other);
1428
+ return _mm512_max_pd(other, self);
1321
1429
  }
1322
1430
  template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
1323
1431
  XSIMD_INLINE batch<T, A> max(batch<T, A> const& self, batch<T, A> const& other, requires_arch<avx512f>) noexcept
@@ -1362,12 +1470,12 @@ namespace xsimd
1362
1470
  template <class A>
1363
1471
  XSIMD_INLINE batch<float, A> min(batch<float, A> const& self, batch<float, A> const& other, requires_arch<avx512f>) noexcept
1364
1472
  {
1365
- return _mm512_min_ps(self, other);
1473
+ return _mm512_min_ps(other, self);
1366
1474
  }
1367
1475
  template <class A>
1368
1476
  XSIMD_INLINE batch<double, A> min(batch<double, A> const& self, batch<double, A> const& other, requires_arch<avx512f>) noexcept
1369
1477
  {
1370
- return _mm512_min_pd(self, other);
1478
+ return _mm512_min_pd(other, self);
1371
1479
  }
1372
1480
  template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
1373
1481
  XSIMD_INLINE batch<T, A> min(batch<T, A> const& self, batch<T, A> const& other, requires_arch<avx512f>) noexcept
@@ -1544,6 +1652,37 @@ namespace xsimd
1544
1652
  return reduce_min(batch<T, avx2>(low));
1545
1653
  }
1546
1654
 
1655
+ // reduce_mul
1656
+ template <class A>
1657
+ XSIMD_INLINE float reduce_mul(batch<float, A> const& rhs, requires_arch<avx512f>) noexcept
1658
+ {
1659
+ return _mm512_reduce_mul_ps(rhs);
1660
+ }
1661
+ template <class A>
1662
+ XSIMD_INLINE double reduce_mul(batch<double, A> const& rhs, requires_arch<avx512f>) noexcept
1663
+ {
1664
+ return _mm512_reduce_mul_pd(rhs);
1665
+ }
1666
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
1667
+ XSIMD_INLINE T reduce_mul(batch<T, A> const& self, requires_arch<avx512f>) noexcept
1668
+ {
1669
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
1670
+ {
1671
+ return _mm512_reduce_mul_epi32(self);
1672
+ }
1673
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
1674
+ {
1675
+ return _mm512_reduce_mul_epi64(self);
1676
+ }
1677
+ else
1678
+ {
1679
+ __m256i low, high;
1680
+ detail::split_avx512(self, low, high);
1681
+ batch<T, avx2> blow(low), bhigh(high);
1682
+ return reduce_mul(blow, avx2 {}) * reduce_mul(bhigh, avx2 {});
1683
+ }
1684
+ }
1685
+
1547
1686
  // rsqrt
1548
1687
  template <class A>
1549
1688
  XSIMD_INLINE batch<float, A> rsqrt(batch<float, A> const& val, requires_arch<avx512f>) noexcept
@@ -1726,8 +1865,8 @@ namespace xsimd
1726
1865
  v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31
1727
1866
  };
1728
1867
  #else
1729
- return _mm512_set_epi16(v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15,
1730
- v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31);
1868
+ return _mm512_set_epi16(v31, v30, v29, v28, v27, v26, v25, v24, v23, v22, v21, v20, v19, v18, v17, v16,
1869
+ v15, v14, v13, v12, v11, v10, v9, v8, v7, v6, v5, v4, v3, v2, v1, v0);
1731
1870
  #endif
1732
1871
  }
1733
1872
 
@@ -1743,8 +1882,8 @@ namespace xsimd
1743
1882
  v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31
1744
1883
  };
1745
1884
  #else
1746
- return _mm512_set_epi16(v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15,
1747
- v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31);
1885
+ return _mm512_set_epi16(v31, v30, v29, v28, v27, v26, v25, v24, v23, v22, v21, v20, v19, v18, v17, v16,
1886
+ v15, v14, v13, v12, v11, v10, v9, v8, v7, v6, v5, v4, v3, v2, v1, v0);
1748
1887
  #endif
1749
1888
  }
1750
1889
 
@@ -1767,10 +1906,10 @@ namespace xsimd
1767
1906
  v48, v49, v50, v51, v52, v53, v54, v55, v56, v57, v58, v59, v60, v61, v62, v63
1768
1907
  };
1769
1908
  #else
1770
- return _mm512_set_epi8(v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15,
1771
- v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31,
1772
- v32, v33, v34, v35, v36, v37, v38, v39, v40, v41, v42, v43, v44, v45, v46, v47,
1773
- v48, v49, v50, v51, v52, v53, v54, v55, v56, v57, v58, v59, v60, v61, v62, v63);
1909
+ return _mm512_set_epi8(v63, v62, v61, v60, v59, v58, v57, v56, v55, v54, v53, v52, v51, v50, v49, v48,
1910
+ v47, v46, v45, v44, v43, v42, v41, v40, v39, v38, v37, v36, v35, v34, v33, v32,
1911
+ v31, v30, v29, v28, v27, v26, v25, v24, v23, v22, v21, v20, v19, v18, v17, v16,
1912
+ v15, v14, v13, v12, v11, v10, v9, v8, v7, v6, v5, v4, v3, v2, v1, v0);
1774
1913
  #endif
1775
1914
  }
1776
1915
  template <class A, class T, detail::enable_unsigned_integer_t<T> = 0>
@@ -1792,10 +1931,10 @@ namespace xsimd
1792
1931
  v48, v49, v50, v51, v52, v53, v54, v55, v56, v57, v58, v59, v60, v61, v62, v63
1793
1932
  };
1794
1933
  #else
1795
- return _mm512_set_epi8(v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15,
1796
- v16, v17, v18, v19, v20, v21, v22, v23, v24, v25, v26, v27, v28, v29, v30, v31,
1797
- v32, v33, v34, v35, v36, v37, v38, v39, v40, v41, v42, v43, v44, v45, v46, v47,
1798
- v48, v49, v50, v51, v52, v53, v54, v55, v56, v57, v58, v59, v60, v61, v62, v63);
1934
+ return _mm512_set_epi8(v63, v62, v61, v60, v59, v58, v57, v56, v55, v54, v53, v52, v51, v50, v49, v48,
1935
+ v47, v46, v45, v44, v43, v42, v41, v40, v39, v38, v37, v36, v35, v34, v33, v32,
1936
+ v31, v30, v29, v28, v27, v26, v25, v24, v23, v22, v21, v20, v19, v18, v17, v16,
1937
+ v15, v14, v13, v12, v11, v10, v9, v8, v7, v6, v5, v4, v3, v2, v1, v0);
1799
1938
  #endif
1800
1939
  }
1801
1940
 
@@ -1845,19 +1984,110 @@ namespace xsimd
1845
1984
  }
1846
1985
 
1847
1986
  // slide_left
1987
+ namespace detail
1988
+ {
1989
+ template <size_t N>
1990
+ struct make_slide_left_pattern
1991
+ {
1992
+ static constexpr size_t get(size_t i, size_t)
1993
+ {
1994
+ return i >= N ? i - N : 0;
1995
+ }
1996
+ };
1997
+
1998
+ template <size_t N, class A, class T>
1999
+ XSIMD_INLINE batch<T, A> slide_left_aligned_u32(batch<T, A> const& x, requires_arch<avx512f>) noexcept
2000
+ {
2001
+ static_assert((N & 3) == 0 || N >= 64, "N must be aligned to 32 bits");
2002
+
2003
+ if (N == 0)
2004
+ {
2005
+ return x;
2006
+ }
2007
+ if (N >= 64)
2008
+ {
2009
+ return batch<T, A>(T(0));
2010
+ }
2011
+
2012
+ __mmask16 mask = uint16_t(0xFFFFu << (N / 4));
2013
+
2014
+ if ((N & 15) == 0)
2015
+ {
2016
+ const uint8_t imm8 = uint8_t(0xe4 << (2 * (N / 16)));
2017
+ return _mm512_maskz_shuffle_i32x4(mask, x, x, imm8);
2018
+ }
2019
+
2020
+ auto slide_pattern = make_batch_constant<uint32_t, detail::make_slide_left_pattern<N / 4>, A>();
2021
+ return _mm512_maskz_permutexvar_epi32(mask, slide_pattern.as_batch(), x);
2022
+ }
2023
+ }
2024
+
1848
2025
  template <size_t N, class A, class T>
1849
- XSIMD_INLINE batch<T, A> slide_left(batch<T, A> const&, requires_arch<avx512f>) noexcept
2026
+ XSIMD_INLINE batch<T, A> slide_left(batch<T, A> const& x, requires_arch<avx512f>) noexcept
1850
2027
  {
1851
- static_assert(N == 0xDEAD, "not implemented yet");
1852
- return {};
2028
+ constexpr size_t NN = N & ~3;
2029
+ if (N == NN || NN >= 64)
2030
+ {
2031
+ // Call fast path
2032
+ return detail::slide_left_aligned_u32<NN>(x, A {});
2033
+ }
2034
+
2035
+ __m512i xl = detail::slide_left_aligned_u32<NN, A, T>(_mm512_slli_epi32(x, 8 * (N - NN)), A {});
2036
+ __m512i xr = detail::slide_left_aligned_u32<NN + 4, A, T>(_mm512_srli_epi32(x, 32 - 8 * (N - NN)), A {});
2037
+ return _mm512_or_epi32(xl, xr);
1853
2038
  }
1854
2039
 
1855
2040
  // slide_right
2041
+ namespace detail
2042
+ {
2043
+ template <size_t N>
2044
+ struct make_slide_right_pattern
2045
+ {
2046
+ static constexpr size_t get(size_t i, size_t n)
2047
+ {
2048
+ return i < (n - N) ? i + N : 0;
2049
+ }
2050
+ };
2051
+
2052
+ template <size_t N, class A, class T>
2053
+ XSIMD_INLINE batch<T, A> slide_right_aligned_u32(batch<T, A> const& x, requires_arch<avx512f>) noexcept
2054
+ {
2055
+ static_assert((N & 3) == 0 || N >= 64, "N must be aligned to 32 bits");
2056
+
2057
+ if (N == 0)
2058
+ {
2059
+ return x;
2060
+ }
2061
+ if (N >= 64)
2062
+ {
2063
+ return batch<T, A>(T(0));
2064
+ }
2065
+
2066
+ __mmask16 mask = 0xFFFFu >> (N / 4);
2067
+
2068
+ if ((N & 15) == 0)
2069
+ {
2070
+ const uint8_t imm8 = 0xe4 >> (2 * (N / 16));
2071
+ return _mm512_maskz_shuffle_i32x4(mask, x, x, imm8);
2072
+ }
2073
+
2074
+ auto slide_pattern = make_batch_constant<uint32_t, detail::make_slide_right_pattern<N / 4>, A>();
2075
+ return _mm512_maskz_permutexvar_epi32(mask, slide_pattern.as_batch(), x);
2076
+ }
2077
+ }
1856
2078
  template <size_t N, class A, class T>
1857
- XSIMD_INLINE batch<T, A> slide_right(batch<T, A> const&, requires_arch<avx512f>) noexcept
2079
+ XSIMD_INLINE batch<T, A> slide_right(batch<T, A> const& x, requires_arch<avx512f>) noexcept
1858
2080
  {
1859
- static_assert(N == 0xDEAD, "not implemented yet");
1860
- return {};
2081
+ constexpr size_t NN = N & ~3;
2082
+ if (N == NN || NN >= 64)
2083
+ {
2084
+ // Call fast path
2085
+ return detail::slide_right_aligned_u32<NN>(x, A {});
2086
+ }
2087
+
2088
+ __m512i xl = detail::slide_right_aligned_u32<NN + 4, A, T>(_mm512_slli_epi32(x, 32 - 8 * (N - NN)), A {});
2089
+ __m512i xr = detail::slide_right_aligned_u32<NN, A, T>(_mm512_srli_epi32(x, 8 * (N - NN)), A {});
2090
+ return _mm512_or_epi32(xl, xr);
1861
2091
  }
1862
2092
 
1863
2093
  // sqrt
@@ -2019,16 +2249,53 @@ namespace xsimd
2019
2249
  return bitwise_cast<int32_t>(swizzle(bitwise_cast<uint32_t>(self), mask, avx512f {}));
2020
2250
  }
2021
2251
 
2022
- // swizzle (constant version)
2023
- template <class A, uint32_t... Vs>
2024
- XSIMD_INLINE batch<float, A> swizzle(batch<float, A> const& self, batch_constant<uint32_t, A, Vs...> mask, requires_arch<avx512f>) noexcept
2252
+ template <class A, uint32_t V0, uint32_t V1, uint32_t V2, uint32_t V3, uint32_t V4, uint32_t V5, uint32_t V6, uint32_t V7,
2253
+ uint32_t V8, uint32_t V9, uint32_t V10, uint32_t V11, uint32_t V12, uint32_t V13, uint32_t V14, uint32_t V15>
2254
+ XSIMD_INLINE batch<float, A> swizzle(batch<float, A> const& self,
2255
+ batch_constant<uint32_t, A, V0, V1, V2, V3, V4, V5, V6, V7, V8, V9, V10, V11, V12, V13, V14, V15> mask,
2256
+ requires_arch<avx512f>) noexcept
2025
2257
  {
2258
+ XSIMD_IF_CONSTEXPR(detail::is_identity(mask))
2259
+ {
2260
+ return self;
2261
+ }
2262
+ XSIMD_IF_CONSTEXPR(!detail::is_cross_lane(mask))
2263
+ {
2264
+ constexpr int imm0 = detail::mod_shuffle(V0, V1, V2, V3);
2265
+ constexpr int imm1 = detail::mod_shuffle(V4, V5, V6, V7);
2266
+ constexpr int imm2 = detail::mod_shuffle(V8, V9, V10, V11);
2267
+ constexpr int imm3 = detail::mod_shuffle(V12, V13, V14, V15);
2268
+ XSIMD_IF_CONSTEXPR(imm0 == imm1 && imm0 == imm2 && imm0 == imm3)
2269
+ {
2270
+ return _mm512_permute_ps(self, imm0);
2271
+ }
2272
+ }
2026
2273
  return swizzle(self, mask.as_batch(), avx512f {});
2027
2274
  }
2028
-
2029
- template <class A, uint64_t... Vs>
2030
- XSIMD_INLINE batch<double, A> swizzle(batch<double, A> const& self, batch_constant<uint64_t, A, Vs...> mask, requires_arch<avx512f>) noexcept
2275
+ template <class A, uint64_t V0, uint64_t V1, uint64_t V2, uint64_t V3, uint64_t V4, uint64_t V5, uint64_t V6, uint64_t V7>
2276
+ XSIMD_INLINE batch<double, A> swizzle(batch<double, A> const& self,
2277
+ batch_constant<uint64_t, A, V0, V1, V2, V3, V4, V5, V6, V7> mask,
2278
+ requires_arch<avx512f>) noexcept
2031
2279
  {
2280
+ XSIMD_IF_CONSTEXPR(detail::is_identity(mask))
2281
+ {
2282
+ return self;
2283
+ }
2284
+ XSIMD_IF_CONSTEXPR(!detail::is_cross_lane(mask))
2285
+ {
2286
+ constexpr auto imm = ((V0 & 1) << 0) | ((V1 & 1) << 1) | ((V2 & 1) << 2) | ((V3 & 1) << 3) | ((V4 & 1) << 4) | ((V5 & 1) << 5) | ((V6 & 1) << 6) | ((V7 & 1) << 7);
2287
+ return _mm512_permute_pd(self, imm);
2288
+ }
2289
+ constexpr bool dup_lo = detail::is_dup_lo(mask);
2290
+ constexpr bool dup_hi = detail::is_dup_hi(mask);
2291
+ XSIMD_IF_CONSTEXPR(dup_lo || dup_hi)
2292
+ {
2293
+ const batch<double, avx2> half = _mm512_extractf64x4_pd(self, dup_lo ? 0 : 1);
2294
+ constexpr typename std::conditional<dup_lo, batch_constant<uint64_t, avx2, V0 % 4, V1 % 4, V2 % 4, V3 % 4>,
2295
+ batch_constant<uint64_t, avx2, V4 % 4, V5 % 4, V6 % 4, V7 % 4>>::type half_mask {};
2296
+ return _mm512_broadcast_f64x4(swizzle(half, half_mask, avx2 {}));
2297
+ }
2298
+ // General case
2032
2299
  return swizzle(self, mask.as_batch(), avx512f {});
2033
2300
  }
2034
2301
 
@@ -2337,8 +2604,47 @@ namespace xsimd
2337
2604
  2));
2338
2605
  }
2339
2606
 
2340
- }
2607
+ // first
2608
+ template <class A>
2609
+ XSIMD_INLINE float first(batch<float, A> const& self, requires_arch<avx512f>) noexcept
2610
+ {
2611
+ return _mm512_cvtss_f32(self);
2612
+ }
2613
+
2614
+ template <class A>
2615
+ XSIMD_INLINE double first(batch<double, A> const& self, requires_arch<avx512f>) noexcept
2616
+ {
2617
+ return _mm512_cvtsd_f64(self);
2618
+ }
2341
2619
 
2620
+ template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
2621
+ XSIMD_INLINE T first(batch<T, A> const& self, requires_arch<avx512f>) noexcept
2622
+ {
2623
+ XSIMD_IF_CONSTEXPR(sizeof(T) == 1)
2624
+ {
2625
+ return static_cast<T>(_mm512_cvtsi512_si32(self) & 0xFF);
2626
+ }
2627
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 2)
2628
+ {
2629
+ return static_cast<T>(_mm512_cvtsi512_si32(self) & 0xFFFF);
2630
+ }
2631
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
2632
+ {
2633
+ return static_cast<T>(_mm512_cvtsi512_si32(self));
2634
+ }
2635
+ else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
2636
+ {
2637
+ batch<T, sse4_2> low = _mm512_castsi512_si128(self);
2638
+ return first(low, sse4_2 {});
2639
+ }
2640
+ else
2641
+ {
2642
+ assert(false && "unsupported arch/op combination");
2643
+ return {};
2644
+ }
2645
+ }
2646
+
2647
+ }
2342
2648
  }
2343
2649
 
2344
2650
  #endif
@@ -24,54 +24,26 @@ namespace xsimd
24
24
  {
25
25
  using namespace types;
26
26
 
27
- namespace detail
28
- {
29
- template <size_t N, size_t... Is>
30
- constexpr std::array<uint8_t, sizeof...(Is)> make_slide_left_bytes_pattern(::xsimd::detail::index_sequence<Is...>)
31
- {
32
- return { (Is >= N ? Is - N : 0)... };
33
- }
34
-
35
- template <size_t N, size_t... Is>
36
- constexpr std::array<uint8_t, sizeof...(Is)> make_slide_right_bytes_pattern(::xsimd::detail::index_sequence<Is...>)
37
- {
38
- return { (Is < (64 - N) ? Is + N : 0)... };
39
- }
40
- }
41
-
42
27
  // slide_left
43
- template <size_t N, class A, class T>
28
+ template <size_t N, class A, class T, class = typename std::enable_if<(N & 3) != 0 && (N < 64)>::type>
44
29
  XSIMD_INLINE batch<T, A> slide_left(batch<T, A> const& x, requires_arch<avx512vbmi>) noexcept
45
30
  {
46
- if (N == 0)
47
- {
48
- return x;
49
- }
50
- if (N >= 64)
51
- {
52
- return batch<T, A>(T(0));
53
- }
31
+ static_assert((N & 3) != 0 && N < 64, "The AVX512F implementation may have a lower latency.");
54
32
 
55
33
  __mmask64 mask = 0xFFFFFFFFFFFFFFFFull << (N & 63);
56
- alignas(A::alignment()) auto slide_pattern = detail::make_slide_left_bytes_pattern<N>(::xsimd::detail::make_index_sequence<512 / 8>());
57
- return _mm512_maskz_permutexvar_epi8(mask, _mm512_load_epi32(slide_pattern.data()), x);
34
+ auto slide_pattern = make_batch_constant<uint8_t, detail::make_slide_left_pattern<N>, A>();
35
+ return _mm512_maskz_permutexvar_epi8(mask, slide_pattern.as_batch(), x);
58
36
  }
59
37
 
60
38
  // slide_right
61
- template <size_t N, class A, class T>
39
+ template <size_t N, class A, class T, class = typename std::enable_if<(N & 3) != 0 && (N < 64)>::type>
62
40
  XSIMD_INLINE batch<T, A> slide_right(batch<T, A> const& x, requires_arch<avx512vbmi>) noexcept
63
41
  {
64
- if (N == 0)
65
- {
66
- return x;
67
- }
68
- if (N >= 64)
69
- {
70
- return batch<T, A>(T(0));
71
- }
42
+ static_assert((N & 3) != 0 && N < 64, "The AVX512F implementation may have a lower latency.");
43
+
72
44
  __mmask64 mask = 0xFFFFFFFFFFFFFFFFull >> (N & 63);
73
- alignas(A::alignment()) auto slide_pattern = detail::make_slide_right_bytes_pattern<N>(::xsimd::detail::make_index_sequence<512 / 8>());
74
- return _mm512_maskz_permutexvar_epi8(mask, _mm512_load_epi32(slide_pattern.data()), x);
45
+ auto slide_pattern = make_batch_constant<uint8_t, detail::make_slide_right_pattern<N>, A>();
46
+ return _mm512_maskz_permutexvar_epi8(mask, slide_pattern.as_batch(), x);
75
47
  }
76
48
 
77
49
  // swizzle (dynamic version)