sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (423) hide show
  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  214. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  215. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  216. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  217. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  218. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  219. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  220. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  221. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  222. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  223. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  224. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  225. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  226. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  227. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  228. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  229. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  230. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  231. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  232. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  233. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  234. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  235. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  236. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  237. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  238. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  239. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  240. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  241. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  242. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  243. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  244. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  245. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  246. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  247. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  248. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  249. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  250. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  251. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  393. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  394. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  395. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  396. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  397. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  398. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  399. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  400. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  401. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  402. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1093 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorBroadcasting
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor broadcasting class.
19
- *
20
- *
21
- */
22
- namespace internal {
23
- template<typename Broadcast, typename XprType>
24
- struct traits<TensorBroadcastingOp<Broadcast, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = XprTraits::NumDimensions;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename Broadcast, typename XprType>
38
- struct eval<TensorBroadcastingOp<Broadcast, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorBroadcastingOp<Broadcast, XprType> EIGEN_DEVICE_REF type;
41
- };
42
-
43
- template<typename Broadcast, typename XprType>
44
- struct nested<TensorBroadcastingOp<Broadcast, XprType>, 1, typename eval<TensorBroadcastingOp<Broadcast, XprType> >::type>
45
- {
46
- typedef TensorBroadcastingOp<Broadcast, XprType> type;
47
- };
48
-
49
- template <typename Dims>
50
- struct is_input_scalar {
51
- static const bool value = false;
52
- };
53
- template <>
54
- struct is_input_scalar<Sizes<> > {
55
- static const bool value = true;
56
- };
57
- #ifndef EIGEN_EMULATE_CXX11_META_H
58
- template <typename std::ptrdiff_t... Indices>
59
- struct is_input_scalar<Sizes<Indices...> > {
60
- static const bool value = (Sizes<Indices...>::total_size == 1);
61
- };
62
- #endif
63
-
64
- } // end namespace internal
65
-
66
-
67
-
68
- template<typename Broadcast, typename XprType>
69
- class TensorBroadcastingOp : public TensorBase<TensorBroadcastingOp<Broadcast, XprType>, ReadOnlyAccessors>
70
- {
71
- public:
72
- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::Scalar Scalar;
73
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
74
- typedef typename XprType::CoeffReturnType CoeffReturnType;
75
- typedef typename Eigen::internal::nested<TensorBroadcastingOp>::type Nested;
76
- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::StorageKind StorageKind;
77
- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::Index Index;
78
-
79
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBroadcastingOp(const XprType& expr, const Broadcast& broadcast)
80
- : m_xpr(expr), m_broadcast(broadcast) {}
81
-
82
- EIGEN_DEVICE_FUNC
83
- const Broadcast& broadcast() const { return m_broadcast; }
84
-
85
- EIGEN_DEVICE_FUNC
86
- const typename internal::remove_all<typename XprType::Nested>::type&
87
- expression() const { return m_xpr; }
88
-
89
- protected:
90
- typename XprType::Nested m_xpr;
91
- const Broadcast m_broadcast;
92
- };
93
-
94
-
95
- // Eval as rvalue
96
- template<typename Broadcast, typename ArgType, typename Device>
97
- struct TensorEvaluator<const TensorBroadcastingOp<Broadcast, ArgType>, Device>
98
- {
99
- typedef TensorBroadcastingOp<Broadcast, ArgType> XprType;
100
- typedef typename XprType::Index Index;
101
- static const int NumDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
102
- typedef DSizes<Index, NumDims> Dimensions;
103
- typedef typename XprType::Scalar Scalar;
104
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions InputDimensions;
105
- typedef typename XprType::CoeffReturnType CoeffReturnType;
106
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
107
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
108
- protected: // all the non-static fields must have the same access control, otherwise the TensorEvaluator wont be standard layout;
109
- bool isCopy, nByOne, oneByN;
110
- public:
111
- typedef StorageMemory<CoeffReturnType, Device> Storage;
112
- typedef typename Storage::Type EvaluatorPointerType;
113
-
114
- enum {
115
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
116
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
117
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
118
- PreferBlockAccess = true,
119
- Layout = TensorEvaluator<ArgType, Device>::Layout,
120
- RawAccess = false
121
- };
122
-
123
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
124
-
125
- // We do block based broadcasting using a trick with 2x tensor rank and 0
126
- // strides. See block method implementation for details.
127
- typedef DSizes<Index, 2 * NumDims> BroadcastDimensions;
128
-
129
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
130
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
131
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
132
-
133
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
134
- ArgTensorBlock;
135
-
136
- typedef typename internal::TensorMaterializedBlock<ScalarNoConst, NumDims,
137
- Layout, Index>
138
- TensorBlock;
139
- //===--------------------------------------------------------------------===//
140
-
141
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
142
- : isCopy(false), nByOne(false), oneByN(false),
143
- m_device(device), m_broadcast(op.broadcast()), m_impl(op.expression(), device)
144
- {
145
-
146
- // The broadcasting op doesn't change the rank of the tensor. One can't broadcast a scalar
147
- // and store the result in a scalar. Instead one should reshape the scalar into a a N-D
148
- // tensor with N >= 1 of 1 element first and then broadcast.
149
- EIGEN_STATIC_ASSERT((NumDims > 0), YOU_MADE_A_PROGRAMMING_MISTAKE);
150
- const InputDimensions& input_dims = m_impl.dimensions();
151
- isCopy = true;
152
- for (int i = 0; i < NumDims; ++i) {
153
- eigen_assert(input_dims[i] > 0);
154
- m_dimensions[i] = input_dims[i] * m_broadcast[i];
155
- if (m_broadcast[i] != 1) {
156
- isCopy = false;
157
- }
158
- }
159
-
160
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
161
- m_inputStrides[0] = 1;
162
- m_outputStrides[0] = 1;
163
- for (int i = 1; i < NumDims; ++i) {
164
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
165
- m_outputStrides[i] = m_outputStrides[i-1] * m_dimensions[i-1];
166
- }
167
- } else {
168
- m_inputStrides[NumDims-1] = 1;
169
- m_outputStrides[NumDims-1] = 1;
170
- for (int i = NumDims-2; i >= 0; --i) {
171
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
172
- m_outputStrides[i] = m_outputStrides[i+1] * m_dimensions[i+1];
173
- }
174
- }
175
-
176
- if (input_dims[0] == 1) {
177
- oneByN = true;
178
- for (int i = 1; i < NumDims; ++i) {
179
- if (m_broadcast[i] != 1) {
180
- oneByN = false;
181
- break;
182
- }
183
- }
184
- } else if (input_dims[NumDims-1] == 1) {
185
- nByOne = true;
186
- for (int i = 0; i < NumDims-1; ++i) {
187
- if (m_broadcast[i] != 1) {
188
- nByOne = false;
189
- break;
190
- }
191
- }
192
- }
193
-
194
- // Handle special format like NCHW, its input shape is '[1, N..., 1]' and
195
- // broadcast shape is '[N, 1..., N]'
196
- if (!oneByN && !nByOne) {
197
- if (input_dims[0] == 1 && input_dims[NumDims-1] == 1 && NumDims > 2) {
198
- nByOne = true;
199
- oneByN = true;
200
- for (int i = 1; i < NumDims-1; ++i) {
201
- if (m_broadcast[i] != 1) {
202
- nByOne = false;
203
- oneByN = false;
204
- break;
205
- }
206
- }
207
- }
208
- }
209
- }
210
-
211
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
212
-
213
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
214
- m_impl.evalSubExprsIfNeeded(NULL);
215
- return true;
216
- }
217
-
218
- #ifdef EIGEN_USE_THREADS
219
- template <typename EvalSubExprsCallback>
220
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
221
- EvaluatorPointerType, EvalSubExprsCallback done) {
222
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
223
- }
224
- #endif // EIGEN_USE_THREADS
225
-
226
- EIGEN_STRONG_INLINE void cleanup() {
227
- m_impl.cleanup();
228
- }
229
-
230
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE CoeffReturnType coeff(Index index) const
231
- {
232
- if (internal::is_input_scalar<typename internal::remove_all<InputDimensions>::type>::value) {
233
- return m_impl.coeff(0);
234
- }
235
-
236
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
237
- if (isCopy) {
238
- return m_impl.coeff(index);
239
- } else {
240
- return coeffColMajor(index);
241
- }
242
- } else {
243
- if (isCopy) {
244
- return m_impl.coeff(index);
245
- } else {
246
- return coeffRowMajor(index);
247
- }
248
- }
249
- }
250
-
251
- // TODO: attempt to speed this up. The integer divisions and modulo are slow
252
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index indexColMajor(Index index) const {
253
- Index inputIndex = 0;
254
- EIGEN_UNROLL_LOOP
255
- for (int i = NumDims - 1; i > 0; --i) {
256
- const Index idx = index / m_outputStrides[i];
257
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
258
- eigen_assert(idx < m_impl.dimensions()[i]);
259
- inputIndex += idx * m_inputStrides[i];
260
- } else {
261
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
262
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
263
- } else {
264
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
265
- }
266
- }
267
- index -= idx * m_outputStrides[i];
268
- }
269
- if (internal::index_statically_eq<Broadcast>(0, 1)) {
270
- eigen_assert(index < m_impl.dimensions()[0]);
271
- inputIndex += index;
272
- } else {
273
- if (internal::index_statically_eq<InputDimensions>(0, 1)) {
274
- eigen_assert(index % m_impl.dimensions()[0] == 0);
275
- } else {
276
- inputIndex += (index % m_impl.dimensions()[0]);
277
- }
278
- }
279
- return inputIndex;
280
- }
281
-
282
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeffColMajor(Index index) const
283
- {
284
- return m_impl.coeff(indexColMajor(index));
285
- }
286
-
287
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index indexRowMajor(Index index) const {
288
- Index inputIndex = 0;
289
- EIGEN_UNROLL_LOOP
290
- for (int i = 0; i < NumDims - 1; ++i) {
291
- const Index idx = index / m_outputStrides[i];
292
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
293
- eigen_assert(idx < m_impl.dimensions()[i]);
294
- inputIndex += idx * m_inputStrides[i];
295
- } else {
296
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
297
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
298
- } else {
299
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
300
- }
301
- }
302
- index -= idx * m_outputStrides[i];
303
- }
304
- if (internal::index_statically_eq<Broadcast>(NumDims - 1, 1)) {
305
- eigen_assert(index < m_impl.dimensions()[NumDims - 1]);
306
- inputIndex += index;
307
- } else {
308
- if (internal::index_statically_eq<InputDimensions>(NumDims - 1, 1)) {
309
- eigen_assert(index % m_impl.dimensions()[NumDims - 1] == 0);
310
- } else {
311
- inputIndex += (index % m_impl.dimensions()[NumDims - 1]);
312
- }
313
- }
314
- return inputIndex;
315
- }
316
-
317
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeffRowMajor(Index index) const
318
- {
319
- return m_impl.coeff(indexRowMajor(index));
320
- }
321
-
322
- template<int LoadMode>
323
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketReturnType packet(Index index) const
324
- {
325
- if (internal::is_input_scalar<typename internal::remove_all<InputDimensions>::type>::value) {
326
- return internal::pset1<PacketReturnType>(m_impl.coeff(0));
327
- }
328
-
329
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
330
- if (isCopy) {
331
- #ifdef EIGEN_GPU_COMPILE_PHASE
332
- // See PR 437: on NVIDIA P100 and K20m we observed a x3-4 speed up by enforcing
333
- // unaligned loads here. The reason is unclear though.
334
- return m_impl.template packet<Unaligned>(index);
335
- #else
336
- return m_impl.template packet<LoadMode>(index);
337
- #endif
338
- } else if (oneByN && !nByOne) {
339
- return packetNByOne<LoadMode>(index);
340
- } else if (!oneByN && nByOne) {
341
- return packetOneByN<LoadMode>(index);
342
- } else if (oneByN && nByOne) {
343
- return packetOneByNByOne<LoadMode>(index);
344
- } else {
345
- return packetColMajor<LoadMode>(index);
346
- }
347
- } else {
348
- if (isCopy) {
349
- #ifdef EIGEN_GPU_COMPILE_PHASE
350
- // See above.
351
- return m_impl.template packet<Unaligned>(index);
352
- #else
353
- return m_impl.template packet<LoadMode>(index);
354
- #endif
355
- } else if (oneByN && !nByOne) {
356
- return packetOneByN<LoadMode>(index);
357
- } else if (!oneByN && nByOne) {
358
- return packetNByOne<LoadMode>(index);
359
- } else if (oneByN && nByOne) {
360
- return packetOneByNByOne<LoadMode>(index);
361
- } else {
362
- return packetRowMajor<LoadMode>(index);
363
- }
364
- }
365
- }
366
-
367
- template<int LoadMode>
368
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetOneByNByOne
369
- (Index index) const
370
- {
371
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
372
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
373
-
374
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
375
- Index startDim, endDim;
376
- Index inputIndex, outputOffset, batchedIndex;
377
-
378
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
379
- startDim = NumDims - 1;
380
- endDim = 1;
381
- } else {
382
- startDim = 0;
383
- endDim = NumDims - 2;
384
- }
385
-
386
- batchedIndex = index % m_outputStrides[startDim];
387
- inputIndex = batchedIndex / m_outputStrides[endDim];
388
- outputOffset = batchedIndex % m_outputStrides[endDim];
389
-
390
- if (outputOffset + PacketSize <= m_outputStrides[endDim]) {
391
- values[0] = m_impl.coeff(inputIndex);
392
- return internal::pload1<PacketReturnType>(values);
393
- } else {
394
- EIGEN_UNROLL_LOOP
395
- for (int i = 0, cur = 0; i < PacketSize; ++i, ++cur) {
396
- if (outputOffset + cur < m_outputStrides[endDim]) {
397
- values[i] = m_impl.coeff(inputIndex);
398
- } else {
399
- ++inputIndex;
400
- inputIndex = (inputIndex == m_inputStrides[startDim] ? 0 : inputIndex);
401
- values[i] = m_impl.coeff(inputIndex);
402
- outputOffset = 0;
403
- cur = 0;
404
- }
405
- }
406
- return internal::pload<PacketReturnType>(values);
407
- }
408
- }
409
-
410
- template<int LoadMode>
411
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetOneByN(Index index) const
412
- {
413
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
414
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
415
-
416
- Index dim, inputIndex;
417
-
418
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
419
- dim = NumDims - 1;
420
- } else {
421
- dim = 0;
422
- }
423
-
424
- inputIndex = index % m_inputStrides[dim];
425
- if (inputIndex + PacketSize <= m_inputStrides[dim]) {
426
- return m_impl.template packet<Unaligned>(inputIndex);
427
- } else {
428
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
429
- EIGEN_UNROLL_LOOP
430
- for (int i = 0; i < PacketSize; ++i) {
431
- if (inputIndex > m_inputStrides[dim]-1) {
432
- inputIndex = 0;
433
- }
434
- values[i] = m_impl.coeff(inputIndex++);
435
- }
436
- return internal::pload<PacketReturnType>(values);
437
- }
438
- }
439
-
440
- template<int LoadMode>
441
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetNByOne(Index index) const
442
- {
443
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
444
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
445
-
446
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
447
- Index dim, inputIndex, outputOffset;
448
-
449
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
450
- dim = 1;
451
- } else {
452
- dim = NumDims - 2;
453
- }
454
-
455
- inputIndex = index / m_outputStrides[dim];
456
- outputOffset = index % m_outputStrides[dim];
457
- if (outputOffset + PacketSize <= m_outputStrides[dim]) {
458
- values[0] = m_impl.coeff(inputIndex);
459
- return internal::pload1<PacketReturnType>(values);
460
- } else {
461
- EIGEN_UNROLL_LOOP
462
- for (int i = 0, cur = 0; i < PacketSize; ++i, ++cur) {
463
- if (outputOffset + cur < m_outputStrides[dim]) {
464
- values[i] = m_impl.coeff(inputIndex);
465
- } else {
466
- values[i] = m_impl.coeff(++inputIndex);
467
- outputOffset = 0;
468
- cur = 0;
469
- }
470
- }
471
- return internal::pload<PacketReturnType>(values);
472
- }
473
- }
474
-
475
- // Ignore the LoadMode and always use unaligned loads since we can't guarantee
476
- // the alignment at compile time.
477
- template<int LoadMode>
478
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetColMajor(Index index) const
479
- {
480
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
481
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
482
-
483
- const Index originalIndex = index;
484
-
485
- Index inputIndex = 0;
486
- EIGEN_UNROLL_LOOP
487
- for (int i = NumDims - 1; i > 0; --i) {
488
- const Index idx = index / m_outputStrides[i];
489
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
490
- eigen_assert(idx < m_impl.dimensions()[i]);
491
- inputIndex += idx * m_inputStrides[i];
492
- } else {
493
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
494
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
495
- } else {
496
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
497
- }
498
- }
499
- index -= idx * m_outputStrides[i];
500
- }
501
- Index innermostLoc;
502
- if (internal::index_statically_eq<Broadcast>(0, 1)) {
503
- eigen_assert(index < m_impl.dimensions()[0]);
504
- innermostLoc = index;
505
- } else {
506
- if (internal::index_statically_eq<InputDimensions>(0, 1)) {
507
- eigen_assert(index % m_impl.dimensions()[0] == 0);
508
- innermostLoc = 0;
509
- } else {
510
- innermostLoc = index % m_impl.dimensions()[0];
511
- }
512
- }
513
- inputIndex += innermostLoc;
514
-
515
- // Todo: this could be extended to the second dimension if we're not
516
- // broadcasting alongside the first dimension, and so on.
517
- if (innermostLoc + PacketSize <= m_impl.dimensions()[0]) {
518
- return m_impl.template packet<Unaligned>(inputIndex);
519
- } else {
520
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
521
- values[0] = m_impl.coeff(inputIndex);
522
- EIGEN_UNROLL_LOOP
523
- for (int i = 1; i < PacketSize; ++i) {
524
- if (innermostLoc + i < m_impl.dimensions()[0]) {
525
- values[i] = m_impl.coeff(inputIndex+i);
526
- } else {
527
- values[i] = coeffColMajor(originalIndex+i);
528
- }
529
- }
530
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
531
- return rslt;
532
- }
533
- }
534
-
535
- template<int LoadMode>
536
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetRowMajor(Index index) const
537
- {
538
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
539
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
540
-
541
- const Index originalIndex = index;
542
-
543
- Index inputIndex = 0;
544
- EIGEN_UNROLL_LOOP
545
- for (int i = 0; i < NumDims - 1; ++i) {
546
- const Index idx = index / m_outputStrides[i];
547
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
548
- eigen_assert(idx < m_impl.dimensions()[i]);
549
- inputIndex += idx * m_inputStrides[i];
550
- } else {
551
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
552
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
553
- } else {
554
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
555
- }
556
- }
557
- index -= idx * m_outputStrides[i];
558
- }
559
- Index innermostLoc;
560
- if (internal::index_statically_eq<Broadcast>(NumDims-1, 1)) {
561
- eigen_assert(index < m_impl.dimensions()[NumDims-1]);
562
- innermostLoc = index;
563
- } else {
564
- if (internal::index_statically_eq<InputDimensions>(NumDims-1, 1)) {
565
- eigen_assert(index % m_impl.dimensions()[NumDims-1] == 0);
566
- innermostLoc = 0;
567
- } else {
568
- innermostLoc = index % m_impl.dimensions()[NumDims-1];
569
- }
570
- }
571
- inputIndex += innermostLoc;
572
-
573
- // Todo: this could be extended to the second dimension if we're not
574
- // broadcasting alongside the first dimension, and so on.
575
- if (innermostLoc + PacketSize <= m_impl.dimensions()[NumDims-1]) {
576
- return m_impl.template packet<Unaligned>(inputIndex);
577
- } else {
578
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
579
- values[0] = m_impl.coeff(inputIndex);
580
- EIGEN_UNROLL_LOOP
581
- for (int i = 1; i < PacketSize; ++i) {
582
- if (innermostLoc + i < m_impl.dimensions()[NumDims-1]) {
583
- values[i] = m_impl.coeff(inputIndex+i);
584
- } else {
585
- values[i] = coeffRowMajor(originalIndex+i);
586
- }
587
- }
588
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
589
- return rslt;
590
- }
591
- }
592
-
593
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
594
- costPerCoeff(bool vectorized) const {
595
- double compute_cost = TensorOpCost::AddCost<Index>();
596
- if (!isCopy && NumDims > 0) {
597
- EIGEN_UNROLL_LOOP
598
- for (int i = NumDims - 1; i > 0; --i) {
599
- compute_cost += TensorOpCost::DivCost<Index>();
600
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
601
- compute_cost +=
602
- TensorOpCost::MulCost<Index>() + TensorOpCost::AddCost<Index>();
603
- } else {
604
- if (!internal::index_statically_eq<InputDimensions>(i, 1)) {
605
- compute_cost += TensorOpCost::MulCost<Index>() +
606
- TensorOpCost::ModCost<Index>() +
607
- TensorOpCost::AddCost<Index>();
608
- }
609
- }
610
- compute_cost +=
611
- TensorOpCost::MulCost<Index>() + TensorOpCost::AddCost<Index>();
612
- }
613
- }
614
- return m_impl.costPerCoeff(vectorized) +
615
- TensorOpCost(0, 0, compute_cost, vectorized, PacketSize);
616
- }
617
-
618
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
619
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
620
- // TODO(wuke): Targeting L1 size is 30% faster than targeting L{-1} on large
621
- // tensors. But this might need further tuning.
622
- const size_t target_size = m_device.firstLevelCacheSize();
623
- return internal::TensorBlockResourceRequirements::merge(
624
- m_impl.getResourceRequirements(),
625
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size));
626
- }
627
-
628
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
629
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
630
- bool /*root_of_expr_ast*/ = false) const {
631
- BlockBroadcastingParams params = blockBroadcastingParams(desc);
632
-
633
- if (params.inner_dim_size == 0 || params.bcast_dim_size == 0) {
634
- return emptyBlock();
635
- }
636
-
637
- // Prepare storage for the materialized broadcasting result.
638
- const typename TensorBlock::Storage block_storage =
639
- TensorBlock::prepareStorage(desc, scratch);
640
- ScalarNoConst* materialized_output = block_storage.data();
641
-
642
- // We potentially will need to materialize input blocks.
643
- size_t materialized_input_size = 0;
644
- ScalarNoConst* materialized_input = NULL;
645
-
646
- // Initialize block broadcating iterator state for outer dimensions (outer
647
- // with regard to bcast dimension). Dimension in this array are always in
648
- // inner_most -> outer_most order (col major layout).
649
- array<BlockBroadcastingIteratorState, NumDims> it;
650
- int idx = 0;
651
-
652
- for (int i = params.inner_dim_count + 1; i < NumDims; ++i) {
653
- const Index dim = IsColMajor ? i : NumDims - 1 - i;
654
- it[idx].size = params.output_dims[dim];
655
- it[idx].count = 0;
656
- it[idx].output_stride = m_outputStrides[dim];
657
- it[idx].output_span = it[idx].output_stride * (it[idx].size - 1);
658
- idx++;
659
- }
660
-
661
- // Write output into the beginning of `materialized_output`.
662
- Index output_offset = 0;
663
-
664
- // We will fill output block by broadcasting along the bcast dim, and
665
- // iterating over outer dimension.
666
- const Index output_size = NumDims == 0 ? 1 : params.output_dims.TotalSize();
667
-
668
- for (Index num_output_coeffs = 0; num_output_coeffs < output_size;) {
669
- ScalarNoConst* bcast_output = materialized_output + num_output_coeffs;
670
- Index bcast_offset = desc.offset() + output_offset;
671
-
672
- // Broadcast along the bcast dimension.
673
- num_output_coeffs += BroadcastBlockAlongBcastDim(
674
- params, bcast_offset, scratch, bcast_output, &materialized_input,
675
- &materialized_input_size);
676
-
677
- // Switch to the next outer dimension.
678
- for (int j = 0; j < idx; ++j) {
679
- if (++it[j].count < it[j].size) {
680
- output_offset += it[j].output_stride;
681
- break;
682
- }
683
- it[j].count = 0;
684
- output_offset -= it[j].output_span;
685
- }
686
- }
687
-
688
- return block_storage.AsTensorMaterializedBlock();
689
- }
690
-
691
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
692
-
693
- const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
694
-
695
- Broadcast functor() const { return m_broadcast; }
696
- #ifdef EIGEN_USE_SYCL
697
- // binding placeholder accessors to a command group handler for SYCL
698
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(
699
- cl::sycl::handler& cgh) const {
700
- m_impl.bind(cgh);
701
- }
702
- #endif
703
- private:
704
- static const bool IsColMajor =
705
- static_cast<int>(Layout) == static_cast<int>(ColMajor);
706
-
707
- // We will build a general case block broadcasting on top of broadcasting
708
- // primitive that will do broadcasting only for the inner dimension(s) along
709
- // the first dimension smaller than the input size (it's called `bcast_dim`).
710
- //
711
- // Example:
712
- // dim: 0 1 2 (ColMajor)
713
- // input size: [9, 3, 6]
714
- // block size: [9, 2, 6]
715
- //
716
- // We will compute broadcasted block by iterating over the outer dimensions
717
- // before `bcast_dim` (only dimension `2` in this example) and computing
718
- // broadcasts along the `bcast_dim` (dimension `1` in this example).
719
-
720
- // BlockBroadcastingParams holds precomputed parameters for broadcasting a
721
- // single block along the broadcasting dimension. Sizes and strides along the
722
- // `bcast_dim` might be invalid, they will be adjusted later in
723
- // `BroadcastBlockAlongBcastDim`.
724
- struct BlockBroadcastingParams {
725
- Dimensions input_dims; // input expression dimensions
726
- Dimensions output_dims; // output block sizes
727
- Dimensions output_strides; // output block strides
728
-
729
- int inner_dim_count; // count inner dimensions matching in size
730
- int bcast_dim; // broadcasting dimension index
731
- Index bcast_dim_size; // broadcasting dimension size
732
- Index inner_dim_size; // inner dimensions size
733
-
734
- // Block sizes and strides for the input block where all dimensions before
735
- // `bcast_dim` are equal to `1`.
736
- Dimensions input_block_sizes;
737
- Dimensions input_block_strides;
738
-
739
- // Block sizes and strides for blocks with extra dimensions and strides `0`.
740
- BroadcastDimensions bcast_block_sizes;
741
- BroadcastDimensions bcast_block_strides;
742
- BroadcastDimensions bcast_input_strides;
743
- };
744
-
745
- struct BlockBroadcastingIteratorState {
746
- Index size;
747
- Index count;
748
- Index output_stride;
749
- Index output_span;
750
- };
751
-
752
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE BlockBroadcastingParams
753
- blockBroadcastingParams(TensorBlockDesc& desc) const {
754
- BlockBroadcastingParams params;
755
-
756
- params.input_dims = Dimensions(m_impl.dimensions());
757
-
758
- // Output block sizes and strides.
759
- params.output_dims = desc.dimensions();
760
- params.output_strides = internal::strides<Layout>(params.output_dims);
761
-
762
- // Find the broadcasting dimension (first dimension with output size smaller
763
- // that the input size).
764
- params.bcast_dim = 0;
765
- params.bcast_dim_size = 1;
766
- params.inner_dim_size = 1;
767
-
768
- // Count the number of inner dimensions that have the same size in the block
769
- // and in the broadcast expression.
770
- params.inner_dim_count = 0;
771
-
772
- for (int i = 0; i < NumDims; ++i) {
773
- const int dim = IsColMajor ? i : NumDims - i - 1;
774
-
775
- if (params.output_dims[dim] == m_dimensions[dim]) {
776
- params.inner_dim_size *= params.output_dims[dim];
777
- ++params.inner_dim_count;
778
- continue;
779
- }
780
-
781
- // First non-matching dimension is the broadcasting dimension.
782
- eigen_assert(params.output_dims[dim] < m_dimensions[dim]);
783
- params.bcast_dim = dim;
784
- params.bcast_dim_size = params.output_dims[dim];
785
- break;
786
- }
787
-
788
- // Calculate the input block size for looking into the input.
789
- for (int i = 0; i < params.inner_dim_count; ++i) {
790
- const int dim = IsColMajor ? i : NumDims - i - 1;
791
- params.input_block_sizes[dim] = params.input_dims[dim];
792
- }
793
- for (int i = params.inner_dim_count; i < NumDims; ++i) {
794
- const int dim = IsColMajor ? i : NumDims - i - 1;
795
- params.input_block_sizes[dim] = 1;
796
- }
797
- params.input_block_strides =
798
- internal::strides<Layout>(params.input_block_sizes);
799
-
800
- // Broadcast with the 0-stride trick: Create 1 extra dim for each
801
- // broadcast, set the input stride to 0.
802
- //
803
- // When ColMajor:
804
- //
805
- // - bcast_block_sizes:
806
- // [d_0, b_0, d_1, b_1, ...]
807
- //
808
- // - bcast_block_strides:
809
- // [output_block_strides[0], output_block_strides[0] * d_0,
810
- // output_block_strides[1], output_block_strides[1] * d_1,
811
- // ...]
812
- //
813
- // - bcast_input_strides:
814
- // [input_block_strides[0], 0,
815
- // input_block_strides[1], 0,
816
- // ...].
817
- //
818
- for (int i = 0; i < params.inner_dim_count; ++i) {
819
- const int dim = IsColMajor ? i : NumDims - i - 1;
820
-
821
- const int copy_dim = IsColMajor ? 2 * i : 2 * NumDims - 2 * i - 1;
822
- const int broadcast_dim = IsColMajor ? copy_dim + 1 : copy_dim - 1;
823
-
824
- params.bcast_block_sizes[copy_dim] = params.input_dims[dim];
825
- params.bcast_block_sizes[broadcast_dim] = m_broadcast[dim];
826
- params.bcast_block_strides[copy_dim] = params.output_strides[dim];
827
- params.bcast_block_strides[broadcast_dim] =
828
- params.output_strides[dim] * params.input_dims[dim];
829
- params.bcast_input_strides[copy_dim] = params.input_block_strides[dim];
830
- params.bcast_input_strides[broadcast_dim] = 0;
831
- }
832
-
833
- for (int i = 2 * params.inner_dim_count; i < 2 * NumDims; ++i) {
834
- const int dim = IsColMajor ? i : 2 * NumDims - i - 1;
835
- params.bcast_block_sizes[dim] = 1;
836
- params.bcast_block_strides[dim] = 0;
837
- params.bcast_input_strides[dim] = 0;
838
- }
839
-
840
- return params;
841
- }
842
-
843
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock emptyBlock() const {
844
- DSizes<Index, NumDims> dimensions;
845
- for (int i = 0; i < NumDims; ++i) dimensions[i] = 0;
846
- return TensorBlock(internal::TensorBlockKind::kView, NULL, dimensions);
847
- }
848
-
849
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index BroadcastBlockAlongBcastDim(
850
- BlockBroadcastingParams params, Index bcast_offset,
851
- TensorBlockScratch& scratch, ScalarNoConst* materialized_output,
852
- ScalarNoConst** materialized_input,
853
- size_t* materialized_input_size) const {
854
- if (params.bcast_dim_size == 1) {
855
- // We just need one block read using the ready-set values above.
856
- return BroadcastBlock(
857
- params.input_block_sizes, params.input_block_strides,
858
- params.bcast_block_sizes, params.bcast_block_strides,
859
- params.bcast_input_strides, bcast_offset, 0, scratch,
860
- materialized_output, materialized_input, materialized_input_size);
861
-
862
- } else if (params.input_dims[params.bcast_dim] == 1) {
863
- // Broadcast bcast dimension (< NumDims) by bcast_dim_size.
864
- const int broadcast_bcast_dim =
865
- IsColMajor ? 2 * params.inner_dim_count + 1
866
- : 2 * NumDims - 2 * params.inner_dim_count - 2;
867
-
868
- params.bcast_block_sizes[broadcast_bcast_dim] = params.bcast_dim_size;
869
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
870
- params.bcast_block_strides[broadcast_bcast_dim] =
871
- params.output_strides[params.bcast_dim];
872
-
873
- return BroadcastBlock(
874
- params.input_block_sizes, params.input_block_strides,
875
- params.bcast_block_sizes, params.bcast_block_strides,
876
- params.bcast_input_strides, bcast_offset, 0, scratch,
877
- materialized_output, materialized_input, materialized_input_size);
878
-
879
- } else {
880
- // Keep track of the total number of the coefficients written to the
881
- // output block.
882
- Index num_output_coeffs = 0;
883
-
884
- // The general case. Let's denote the output block as
885
- //
886
- // x[..., a:a+bcast_dim_size, :, ..., :]
887
- //
888
- // where a:a+bcast_dim_size is a slice on the bcast_dim dimension
889
- // (< NumDims). We need to split the a:a+bcast_dim_size into possibly 3
890
- // sub-blocks:
891
- //
892
- // (1) a:b, where b is the smallest multiple of
893
- // input_dims[bcast_dim_start] in [a, a+bcast_dim_size].
894
- //
895
- // (2) b:c, where c is the largest multiple of input_dims[bcast_dim_start]
896
- // in [a, a+bcast_dim_size].
897
- //
898
- // (3) c:a+bcast_dim_size .
899
- //
900
- // Or, when b and c do not exist, we just need to process the whole block
901
- // together.
902
-
903
- // Find a.
904
- const Index bcast_dim_left_index =
905
- bcast_offset / m_outputStrides[params.bcast_dim];
906
-
907
- // Find b and c.
908
- const Index input_bcast_dim_size = params.input_dims[params.bcast_dim];
909
-
910
- // First multiple after a. This is b when <= bcast_dim_left_index +
911
- // bcast_dim_size.
912
- const Index first_multiple =
913
- divup<Index>(bcast_dim_left_index, input_bcast_dim_size) *
914
- input_bcast_dim_size;
915
-
916
- if (first_multiple <= bcast_dim_left_index + params.bcast_dim_size) {
917
- // b exists, so does c. Find it.
918
- const Index last_multiple =
919
- (bcast_dim_left_index + params.bcast_dim_size) /
920
- input_bcast_dim_size * input_bcast_dim_size;
921
- const int copy_bcast_dim =
922
- IsColMajor ? 2 * params.inner_dim_count
923
- : 2 * NumDims - 2 * params.inner_dim_count - 1;
924
- const int broadcast_bcast_dim =
925
- IsColMajor ? 2 * params.inner_dim_count + 1
926
- : 2 * NumDims - 2 * params.inner_dim_count - 2;
927
-
928
- if (first_multiple > bcast_dim_left_index) {
929
- const Index head_size = first_multiple - bcast_dim_left_index;
930
- params.input_block_sizes[params.bcast_dim] = head_size;
931
- params.bcast_block_sizes[copy_bcast_dim] = head_size;
932
- params.bcast_input_strides[copy_bcast_dim] =
933
- params.input_block_strides[params.bcast_dim];
934
- params.bcast_block_strides[copy_bcast_dim] =
935
- params.output_strides[params.bcast_dim];
936
- params.bcast_block_sizes[broadcast_bcast_dim] = 1;
937
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
938
- params.bcast_block_strides[broadcast_bcast_dim] =
939
- params.output_strides[params.bcast_dim] *
940
- params.input_dims[params.bcast_dim];
941
-
942
- num_output_coeffs += BroadcastBlock(
943
- params.input_block_sizes, params.input_block_strides,
944
- params.bcast_block_sizes, params.bcast_block_strides,
945
- params.bcast_input_strides, bcast_offset, 0, scratch,
946
- materialized_output, materialized_input, materialized_input_size);
947
- }
948
- if (first_multiple < last_multiple) {
949
- params.input_block_sizes[params.bcast_dim] = input_bcast_dim_size;
950
- params.bcast_block_sizes[copy_bcast_dim] = input_bcast_dim_size;
951
- params.bcast_input_strides[copy_bcast_dim] =
952
- params.input_block_strides[params.bcast_dim];
953
- params.bcast_block_strides[copy_bcast_dim] =
954
- params.output_strides[params.bcast_dim];
955
- params.bcast_block_sizes[broadcast_bcast_dim] =
956
- (last_multiple - first_multiple) / input_bcast_dim_size;
957
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
958
- params.bcast_block_strides[broadcast_bcast_dim] =
959
- params.output_strides[params.bcast_dim] *
960
- params.input_dims[params.bcast_dim];
961
- const Index offset = (first_multiple - bcast_dim_left_index) *
962
- m_outputStrides[params.bcast_dim];
963
-
964
- num_output_coeffs += BroadcastBlock(
965
- params.input_block_sizes, params.input_block_strides,
966
- params.bcast_block_sizes, params.bcast_block_strides,
967
- params.bcast_input_strides, bcast_offset, offset, scratch,
968
- materialized_output, materialized_input, materialized_input_size);
969
- }
970
- if (last_multiple < bcast_dim_left_index + params.bcast_dim_size) {
971
- const Index tail_size =
972
- bcast_dim_left_index + params.bcast_dim_size - last_multiple;
973
- params.input_block_sizes[params.bcast_dim] = tail_size;
974
- params.bcast_block_sizes[copy_bcast_dim] = tail_size;
975
- params.bcast_input_strides[copy_bcast_dim] =
976
- params.input_block_strides[params.bcast_dim];
977
- params.bcast_block_strides[copy_bcast_dim] =
978
- params.output_strides[params.bcast_dim];
979
- params.bcast_block_sizes[broadcast_bcast_dim] = 1;
980
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
981
- params.bcast_block_strides[broadcast_bcast_dim] =
982
- params.output_strides[params.bcast_dim] *
983
- params.input_dims[params.bcast_dim];
984
- const Index offset = (last_multiple - bcast_dim_left_index) *
985
- m_outputStrides[params.bcast_dim];
986
-
987
- num_output_coeffs += BroadcastBlock(
988
- params.input_block_sizes, params.input_block_strides,
989
- params.bcast_block_sizes, params.bcast_block_strides,
990
- params.bcast_input_strides, bcast_offset, offset, scratch,
991
- materialized_output, materialized_input, materialized_input_size);
992
- }
993
- } else {
994
- // b and c do not exist.
995
- const int copy_bcast_dim =
996
- IsColMajor ? 2 * params.inner_dim_count
997
- : 2 * NumDims - 2 * params.inner_dim_count - 1;
998
- params.input_block_sizes[params.bcast_dim] = params.bcast_dim_size;
999
- params.bcast_block_sizes[copy_bcast_dim] = params.bcast_dim_size;
1000
- params.bcast_input_strides[copy_bcast_dim] =
1001
- params.input_block_strides[params.bcast_dim];
1002
- params.bcast_block_strides[copy_bcast_dim] =
1003
- params.output_strides[params.bcast_dim];
1004
-
1005
- num_output_coeffs += BroadcastBlock(
1006
- params.input_block_sizes, params.input_block_strides,
1007
- params.bcast_block_sizes, params.bcast_block_strides,
1008
- params.bcast_input_strides, bcast_offset, 0, scratch,
1009
- materialized_output, materialized_input, materialized_input_size);
1010
- }
1011
-
1012
- return num_output_coeffs;
1013
- }
1014
- }
1015
-
1016
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index BroadcastBlock(
1017
- const Dimensions& input_block_sizes,
1018
- const Dimensions& input_block_strides,
1019
- const BroadcastDimensions& bcast_block_sizes,
1020
- const BroadcastDimensions& bcast_block_strides,
1021
- const BroadcastDimensions& bcast_input_strides, Index bcast_offset,
1022
- Index offset, TensorBlockScratch& scratch,
1023
- ScalarNoConst* materialized_output, ScalarNoConst** materialized_input,
1024
- size_t* materialized_input_size) const {
1025
- // ---------------------------------------------------------------------- //
1026
- // Tensor block descriptor for reading block from the input.
1027
- const Index input_offset = bcast_offset + offset;
1028
- TensorBlockDesc input_desc(
1029
- IsColMajor ? indexColMajor(input_offset) : indexRowMajor(input_offset),
1030
- input_block_sizes);
1031
-
1032
- ArgTensorBlock input_block = m_impl.block(input_desc, scratch);
1033
-
1034
- // ---------------------------------------------------------------------- //
1035
- // Materialize input block into a temporary memory buffer only if it's not
1036
- // already available in the arg block.
1037
- const ScalarNoConst* input_buffer = NULL;
1038
-
1039
- if (input_block.data() != NULL) {
1040
- // Input block already has raw data, there is no need to materialize it.
1041
- input_buffer = input_block.data();
1042
-
1043
- } else {
1044
- // Otherwise we have to do block assignment into a temporary buffer.
1045
-
1046
- // Maybe reuse previously allocated buffer, or allocate a new one with a
1047
- // scratch allocator.
1048
- const size_t input_total_size = input_block_sizes.TotalSize();
1049
- if (*materialized_input == NULL ||
1050
- *materialized_input_size < input_total_size) {
1051
- *materialized_input_size = input_total_size;
1052
- void* mem = scratch.allocate(*materialized_input_size * sizeof(Scalar));
1053
- *materialized_input = static_cast<ScalarNoConst*>(mem);
1054
- }
1055
-
1056
- typedef internal::TensorBlockAssignment<
1057
- ScalarNoConst, NumDims, typename ArgTensorBlock::XprType, Index>
1058
- TensorBlockAssignment;
1059
-
1060
- TensorBlockAssignment::Run(
1061
- TensorBlockAssignment::target(input_block_sizes, input_block_strides,
1062
- *materialized_input),
1063
- input_block.expr());
1064
-
1065
- input_buffer = *materialized_input;
1066
- }
1067
-
1068
- // ---------------------------------------------------------------------- //
1069
- // Copy data from materialized input block to the materialized output, using
1070
- // given broadcast strides (strides with zeroes).
1071
- typedef internal::TensorBlockIO<ScalarNoConst, Index, 2 * NumDims, Layout>
1072
- TensorBlockIO;
1073
-
1074
- typename TensorBlockIO::Src src(bcast_input_strides, input_buffer);
1075
- typename TensorBlockIO::Dst dst(bcast_block_sizes, bcast_block_strides,
1076
- materialized_output + offset);
1077
-
1078
- return TensorBlockIO::Copy(dst, src);
1079
- }
1080
-
1081
- protected:
1082
- const Device EIGEN_DEVICE_REF m_device;
1083
- const typename internal::remove_reference<Broadcast>::type m_broadcast;
1084
- Dimensions m_dimensions;
1085
- array<Index, NumDims> m_outputStrides;
1086
- array<Index, NumDims> m_inputStrides;
1087
- TensorEvaluator<ArgType, Device> m_impl;
1088
- };
1089
-
1090
-
1091
- } // end namespace Eigen
1092
-
1093
- #endif // EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H