sequenzo 0.1.17__cp310-cp310-macosx_10_9_universal2.whl → 0.1.19__cp310-cp310-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h

@@ -1,1025 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SUPERLUSUPPORT_H
-#define EIGEN_SUPERLUSUPPORT_H
-
-namespace Eigen {
-
-#if defined(SUPERLU_MAJOR_VERSION) && (SUPERLU_MAJOR_VERSION >= 5)
-#define DECL_GSSVX(PREFIX,FLOATTYPE,KEYTYPE)		\
-    extern "C" {                                                                                          \
-      extern void PREFIX##gssvx(superlu_options_t *, SuperMatrix *, int *, int *, int *,                  \
-                                char *, FLOATTYPE *, FLOATTYPE *, SuperMatrix *, SuperMatrix *,           \
-                                void *, int, SuperMatrix *, SuperMatrix *,                                \
-                                FLOATTYPE *, FLOATTYPE *, FLOATTYPE *, FLOATTYPE *,                       \
-                                GlobalLU_t *, mem_usage_t *, SuperLUStat_t *, int *);                     \
-    }                                                                                                     \
-    inline float SuperLU_gssvx(superlu_options_t *options, SuperMatrix *A,                                \
-         int *perm_c, int *perm_r, int *etree, char *equed,                                               \
-         FLOATTYPE *R, FLOATTYPE *C, SuperMatrix *L,                                                      \
-         SuperMatrix *U, void *work, int lwork,                                                           \
-         SuperMatrix *B, SuperMatrix *X,                                                                  \
-         FLOATTYPE *recip_pivot_growth,                                                                   \
-         FLOATTYPE *rcond, FLOATTYPE *ferr, FLOATTYPE *berr,                                              \
-         SuperLUStat_t *stats, int *info, KEYTYPE) {                                                      \
-    mem_usage_t mem_usage;                                                                                \
-    GlobalLU_t gLU;                                                                                       \
-    PREFIX##gssvx(options, A, perm_c, perm_r, etree, equed, R, C, L,                                      \
-         U, work, lwork, B, X, recip_pivot_growth, rcond,                                                 \
-         ferr, berr, &gLU, &mem_usage, stats, info);                                                      \
-    return mem_usage.for_lu; /* bytes used by the factor storage */                                       \
-  }
-#else // version < 5.0
-#define DECL_GSSVX(PREFIX,FLOATTYPE,KEYTYPE)		\
-    extern "C" {                                                                                          \
-      extern void PREFIX##gssvx(superlu_options_t *, SuperMatrix *, int *, int *, int *,                  \
-                                char *, FLOATTYPE *, FLOATTYPE *, SuperMatrix *, SuperMatrix *,           \
-                                void *, int, SuperMatrix *, SuperMatrix *,                                \
-                                FLOATTYPE *, FLOATTYPE *, FLOATTYPE *, FLOATTYPE *,                       \
-                                mem_usage_t *, SuperLUStat_t *, int *);                                   \
-    }                                                                                                     \
-    inline float SuperLU_gssvx(superlu_options_t *options, SuperMatrix *A,                                \
-         int *perm_c, int *perm_r, int *etree, char *equed,                                               \
-         FLOATTYPE *R, FLOATTYPE *C, SuperMatrix *L,                                                      \
-         SuperMatrix *U, void *work, int lwork,                                                           \
-         SuperMatrix *B, SuperMatrix *X,                                                                  \
-         FLOATTYPE *recip_pivot_growth,                                                                   \
-         FLOATTYPE *rcond, FLOATTYPE *ferr, FLOATTYPE *berr,                                              \
-         SuperLUStat_t *stats, int *info, KEYTYPE) {                                                      \
-    mem_usage_t mem_usage;                                                                                \
-    PREFIX##gssvx(options, A, perm_c, perm_r, etree, equed, R, C, L,                                      \
-         U, work, lwork, B, X, recip_pivot_growth, rcond,                                                 \
-         ferr, berr, &mem_usage, stats, info);                                                            \
-    return mem_usage.for_lu; /* bytes used by the factor storage */                                       \
-  }
-#endif
-
-DECL_GSSVX(s,float,float)
-DECL_GSSVX(c,float,std::complex<float>)
-DECL_GSSVX(d,double,double)
-DECL_GSSVX(z,double,std::complex<double>)
-
-#ifdef MILU_ALPHA
-#define EIGEN_SUPERLU_HAS_ILU
-#endif
-
-#ifdef EIGEN_SUPERLU_HAS_ILU
-
-// similarly for the incomplete factorization using gsisx
-#define DECL_GSISX(PREFIX,FLOATTYPE,KEYTYPE)                                                    \
-    extern "C" {                                                                                \
-      extern void PREFIX##gsisx(superlu_options_t *, SuperMatrix *, int *, int *, int *,        \
-                         char *, FLOATTYPE *, FLOATTYPE *, SuperMatrix *, SuperMatrix *,        \
-                         void *, int, SuperMatrix *, SuperMatrix *, FLOATTYPE *, FLOATTYPE *,   \
-                         mem_usage_t *, SuperLUStat_t *, int *);                        \
-    }                                                                                           \
-    inline float SuperLU_gsisx(superlu_options_t *options, SuperMatrix *A,                      \
-         int *perm_c, int *perm_r, int *etree, char *equed,                                     \
-         FLOATTYPE *R, FLOATTYPE *C, SuperMatrix *L,                                            \
-         SuperMatrix *U, void *work, int lwork,                                                 \
-         SuperMatrix *B, SuperMatrix *X,                                                        \
-         FLOATTYPE *recip_pivot_growth,                                                         \
-         FLOATTYPE *rcond,                                                                      \
-         SuperLUStat_t *stats, int *info, KEYTYPE) {                                            \
-    mem_usage_t mem_usage;                                                              \
-    PREFIX##gsisx(options, A, perm_c, perm_r, etree, equed, R, C, L,                            \
-         U, work, lwork, B, X, recip_pivot_growth, rcond,                                       \
-         &mem_usage, stats, info);                                                              \
-    return mem_usage.for_lu; /* bytes used by the factor storage */                             \
-  }
-
-DECL_GSISX(s,float,float)
-DECL_GSISX(c,float,std::complex<float>)
-DECL_GSISX(d,double,double)
-DECL_GSISX(z,double,std::complex<double>)
-
-#endif
-
-template<typename MatrixType>
-struct SluMatrixMapHelper;
-
-/** \internal
-  *
-  * A wrapper class for SuperLU matrices. It supports only compressed sparse matrices
-  * and dense matrices. Supernodal and other fancy format are not supported by this wrapper.
-  *
-  * This wrapper class mainly aims to avoids the need of dynamic allocation of the storage structure.
-  */
-struct SluMatrix : SuperMatrix
-{
-  SluMatrix()
-  {
-    Store = &storage;
-  }
-
-  SluMatrix(const SluMatrix& other)
-    : SuperMatrix(other)
-  {
-    Store = &storage;
-    storage = other.storage;
-  }
-
-  SluMatrix& operator=(const SluMatrix& other)
-  {
-    SuperMatrix::operator=(static_cast<const SuperMatrix&>(other));
-    Store = &storage;
-    storage = other.storage;
-    return *this;
-  }
-
-  struct
-  {
-    union {int nnz;int lda;};
-    void *values;
-    int *innerInd;
-    int *outerInd;
-  } storage;
-
-  void setStorageType(Stype_t t)
-  {
-    Stype = t;
-    if (t==SLU_NC || t==SLU_NR || t==SLU_DN)
-      Store = &storage;
-    else
-    {
-      eigen_assert(false && "storage type not supported");
-      Store = 0;
-    }
-  }
-
-  template<typename Scalar>
-  void setScalarType()
-  {
-    if (internal::is_same<Scalar,float>::value)
-      Dtype = SLU_S;
-    else if (internal::is_same<Scalar,double>::value)
-      Dtype = SLU_D;
-    else if (internal::is_same<Scalar,std::complex<float> >::value)
-      Dtype = SLU_C;
-    else if (internal::is_same<Scalar,std::complex<double> >::value)
-      Dtype = SLU_Z;
-    else
-    {
-      eigen_assert(false && "Scalar type not supported by SuperLU");
-    }
-  }
-
-  template<typename MatrixType>
-  static SluMatrix Map(MatrixBase<MatrixType>& _mat)
-  {
-    MatrixType& mat(_mat.derived());
-    eigen_assert( ((MatrixType::Flags&RowMajorBit)!=RowMajorBit) && "row-major dense matrices are not supported by SuperLU");
-    SluMatrix res;
-    res.setStorageType(SLU_DN);
-    res.setScalarType<typename MatrixType::Scalar>();
-    res.Mtype     = SLU_GE;
-
-    res.nrow      = internal::convert_index<int>(mat.rows());
-    res.ncol      = internal::convert_index<int>(mat.cols());
-
-    res.storage.lda       = internal::convert_index<int>(MatrixType::IsVectorAtCompileTime ? mat.size() : mat.outerStride());
-    res.storage.values    = (void*)(mat.data());
-    return res;
-  }
-
-  template<typename MatrixType>
-  static SluMatrix Map(SparseMatrixBase<MatrixType>& a_mat)
-  {
-    MatrixType &mat(a_mat.derived());
-    SluMatrix res;
-    if ((MatrixType::Flags&RowMajorBit)==RowMajorBit)
-    {
-      res.setStorageType(SLU_NR);
-      res.nrow      = internal::convert_index<int>(mat.cols());
-      res.ncol      = internal::convert_index<int>(mat.rows());
-    }
-    else
-    {
-      res.setStorageType(SLU_NC);
-      res.nrow      = internal::convert_index<int>(mat.rows());
-      res.ncol      = internal::convert_index<int>(mat.cols());
-    }
-
-    res.Mtype       = SLU_GE;
-
-    res.storage.nnz       = internal::convert_index<int>(mat.nonZeros());
-    res.storage.values    = mat.valuePtr();
-    res.storage.innerInd  = mat.innerIndexPtr();
-    res.storage.outerInd  = mat.outerIndexPtr();
-
-    res.setScalarType<typename MatrixType::Scalar>();
-
-    // FIXME the following is not very accurate
-    if (int(MatrixType::Flags) & int(Upper))
-      res.Mtype = SLU_TRU;
-    if (int(MatrixType::Flags) & int(Lower))
-      res.Mtype = SLU_TRL;
-
-    eigen_assert(((int(MatrixType::Flags) & int(SelfAdjoint))==0) && "SelfAdjoint matrix shape not supported by SuperLU");
-
-    return res;
-  }
-};
-
-template<typename Scalar, int Rows, int Cols, int Options, int MRows, int MCols>
-struct SluMatrixMapHelper<Matrix<Scalar,Rows,Cols,Options,MRows,MCols> >
-{
-  typedef Matrix<Scalar,Rows,Cols,Options,MRows,MCols> MatrixType;
-  static void run(MatrixType& mat, SluMatrix& res)
-  {
-    eigen_assert( ((Options&RowMajor)!=RowMajor) && "row-major dense matrices is not supported by SuperLU");
-    res.setStorageType(SLU_DN);
-    res.setScalarType<Scalar>();
-    res.Mtype     = SLU_GE;
-
-    res.nrow      = mat.rows();
-    res.ncol      = mat.cols();
-
-    res.storage.lda       = mat.outerStride();
-    res.storage.values    = mat.data();
-  }
-};
-
-template<typename Derived>
-struct SluMatrixMapHelper<SparseMatrixBase<Derived> >
-{
-  typedef Derived MatrixType;
-  static void run(MatrixType& mat, SluMatrix& res)
-  {
-    if ((MatrixType::Flags&RowMajorBit)==RowMajorBit)
-    {
-      res.setStorageType(SLU_NR);
-      res.nrow      = mat.cols();
-      res.ncol      = mat.rows();
-    }
-    else
-    {
-      res.setStorageType(SLU_NC);
-      res.nrow      = mat.rows();
-      res.ncol      = mat.cols();
-    }
-
-    res.Mtype       = SLU_GE;
-
-    res.storage.nnz       = mat.nonZeros();
-    res.storage.values    = mat.valuePtr();
-    res.storage.innerInd  = mat.innerIndexPtr();
-    res.storage.outerInd  = mat.outerIndexPtr();
-
-    res.setScalarType<typename MatrixType::Scalar>();
-
-    // FIXME the following is not very accurate
-    if (MatrixType::Flags & Upper)
-      res.Mtype = SLU_TRU;
-    if (MatrixType::Flags & Lower)
-      res.Mtype = SLU_TRL;
-
-    eigen_assert(((MatrixType::Flags & SelfAdjoint)==0) && "SelfAdjoint matrix shape not supported by SuperLU");
-  }
-};
-
-namespace internal {
-
-template<typename MatrixType>
-SluMatrix asSluMatrix(MatrixType& mat)
-{
-  return SluMatrix::Map(mat);
-}
-
-/** View a Super LU matrix as an Eigen expression */
-template<typename Scalar, int Flags, typename Index>
-MappedSparseMatrix<Scalar,Flags,Index> map_superlu(SluMatrix& sluMat)
-{
-  eigen_assert(((Flags&RowMajor)==RowMajor && sluMat.Stype == SLU_NR)
-         || ((Flags&ColMajor)==ColMajor && sluMat.Stype == SLU_NC));
-
-  Index outerSize = (Flags&RowMajor)==RowMajor ? sluMat.ncol : sluMat.nrow;
-
-  return MappedSparseMatrix<Scalar,Flags,Index>(
-    sluMat.nrow, sluMat.ncol, sluMat.storage.outerInd[outerSize],
-    sluMat.storage.outerInd, sluMat.storage.innerInd, reinterpret_cast<Scalar*>(sluMat.storage.values) );
-}
-
-} // end namespace internal
-
-/** \ingroup SuperLUSupport_Module
-  * \class SuperLUBase
-  * \brief The base class for the direct and incomplete LU factorization of SuperLU
-  */
-template<typename _MatrixType, typename Derived>
-class SuperLUBase : public SparseSolverBase<Derived>
-{
-  protected:
-    typedef SparseSolverBase<Derived> Base;
-    using Base::derived;
-    using Base::m_isInitialized;
-  public:
-    typedef _MatrixType MatrixType;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename MatrixType::StorageIndex StorageIndex;
-    typedef Matrix<Scalar,Dynamic,1> Vector;
-    typedef Matrix<int, 1, MatrixType::ColsAtCompileTime> IntRowVectorType;
-    typedef Matrix<int, MatrixType::RowsAtCompileTime, 1> IntColVectorType;    
-    typedef Map<PermutationMatrix<Dynamic,Dynamic,int> > PermutationMap;
-    typedef SparseMatrix<Scalar> LUMatrixType;
-    enum {
-      ColsAtCompileTime = MatrixType::ColsAtCompileTime,
-      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
-    };
-
-  public:
-
-    SuperLUBase() {}
-
-    ~SuperLUBase()
-    {
-      clearFactors();
-    }
-    
-    inline Index rows() const { return m_matrix.rows(); }
-    inline Index cols() const { return m_matrix.cols(); }
-    
-    /** \returns a reference to the Super LU option object to configure the  Super LU algorithms. */
-    inline superlu_options_t& options() { return m_sluOptions; }
-    
-    /** \brief Reports whether previous computation was successful.
-      *
-      * \returns \c Success if computation was successful,
-      *          \c NumericalIssue if the matrix.appears to be negative.
-      */
-    ComputationInfo info() const
-    {
-      eigen_assert(m_isInitialized && "Decomposition is not initialized.");
-      return m_info;
-    }
-
-    /** Computes the sparse Cholesky decomposition of \a matrix */
-    void compute(const MatrixType& matrix)
-    {
-      derived().analyzePattern(matrix);
-      derived().factorize(matrix);
-    }
-
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      * 
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& /*matrix*/)
-    {
-      m_isInitialized = true;
-      m_info = Success;
-      m_analysisIsOk = true;
-      m_factorizationIsOk = false;
-    }
-    
-    template<typename Stream>
-    void dumpMemory(Stream& /*s*/)
-    {}
-    
-  protected:
-    
-    void initFactorization(const MatrixType& a)
-    {
-      set_default_options(&this->m_sluOptions);
-      
-      const Index size = a.rows();
-      m_matrix = a;
-
-      m_sluA = internal::asSluMatrix(m_matrix);
-      clearFactors();
-
-      m_p.resize(size);
-      m_q.resize(size);
-      m_sluRscale.resize(size);
-      m_sluCscale.resize(size);
-      m_sluEtree.resize(size);
-
-      // set empty B and X
-      m_sluB.setStorageType(SLU_DN);
-      m_sluB.setScalarType<Scalar>();
-      m_sluB.Mtype          = SLU_GE;
-      m_sluB.storage.values = 0;
-      m_sluB.nrow           = 0;
-      m_sluB.ncol           = 0;
-      m_sluB.storage.lda    = internal::convert_index<int>(size);
-      m_sluX                = m_sluB;
-      
-      m_extractedDataAreDirty = true;
-    }
-    
-    void init()
-    {
-      m_info = InvalidInput;
-      m_isInitialized = false;
-      m_sluL.Store = 0;
-      m_sluU.Store = 0;
-    }
-    
-    void extractData() const;
-
-    void clearFactors()
-    {
-      if(m_sluL.Store)
-        Destroy_SuperNode_Matrix(&m_sluL);
-      if(m_sluU.Store)
-        Destroy_CompCol_Matrix(&m_sluU);
-
-      m_sluL.Store = 0;
-      m_sluU.Store = 0;
-
-      memset(&m_sluL,0,sizeof m_sluL);
-      memset(&m_sluU,0,sizeof m_sluU);
-    }
-
-    // cached data to reduce reallocation, etc.
-    mutable LUMatrixType m_l;
-    mutable LUMatrixType m_u;
-    mutable IntColVectorType m_p;
-    mutable IntRowVectorType m_q;
-
-    mutable LUMatrixType m_matrix;  // copy of the factorized matrix
-    mutable SluMatrix m_sluA;
-    mutable SuperMatrix m_sluL, m_sluU;
-    mutable SluMatrix m_sluB, m_sluX;
-    mutable SuperLUStat_t m_sluStat;
-    mutable superlu_options_t m_sluOptions;
-    mutable std::vector<int> m_sluEtree;
-    mutable Matrix<RealScalar,Dynamic,1> m_sluRscale, m_sluCscale;
-    mutable Matrix<RealScalar,Dynamic,1> m_sluFerr, m_sluBerr;
-    mutable char m_sluEqued;
-
-    mutable ComputationInfo m_info;
-    int m_factorizationIsOk;
-    int m_analysisIsOk;
-    mutable bool m_extractedDataAreDirty;
-    
-  private:
-    SuperLUBase(SuperLUBase& ) { }
-};
-
-
-/** \ingroup SuperLUSupport_Module
-  * \class SuperLU
-  * \brief A sparse direct LU factorization and solver based on the SuperLU library
-  *
-  * This class allows to solve for A.X = B sparse linear problems via a direct LU factorization
-  * using the SuperLU library. The sparse matrix A must be squared and invertible. The vectors or matrices
-  * X and B can be either dense or sparse.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  *
-  * \warning This class is only for the 4.x versions of SuperLU. The 3.x and 5.x versions are not supported.
-  *
-  * \implsparsesolverconcept
-  *
-  * \sa \ref TutorialSparseSolverConcept, class SparseLU
-  */
-template<typename _MatrixType>
-class SuperLU : public SuperLUBase<_MatrixType,SuperLU<_MatrixType> >
-{
-  public:
-    typedef SuperLUBase<_MatrixType,SuperLU> Base;
-    typedef _MatrixType MatrixType;
-    typedef typename Base::Scalar Scalar;
-    typedef typename Base::RealScalar RealScalar;
-    typedef typename Base::StorageIndex StorageIndex;
-    typedef typename Base::IntRowVectorType IntRowVectorType;
-    typedef typename Base::IntColVectorType IntColVectorType;   
-    typedef typename Base::PermutationMap PermutationMap;
-    typedef typename Base::LUMatrixType LUMatrixType;
-    typedef TriangularView<LUMatrixType, Lower|UnitDiag>  LMatrixType;
-    typedef TriangularView<LUMatrixType,  Upper>          UMatrixType;
-
-  public:
-    using Base::_solve_impl;
-
-    SuperLU() : Base() { init(); }
-
-    explicit SuperLU(const MatrixType& matrix) : Base()
-    {
-      init();
-      Base::compute(matrix);
-    }
-
-    ~SuperLU()
-    {
-    }
-    
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      * 
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& matrix)
-    {
-      m_info = InvalidInput;
-      m_isInitialized = false;
-      Base::analyzePattern(matrix);
-    }
-    
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must has the same sparcity than the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& matrix);
-    
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const;
-    
-    inline const LMatrixType& matrixL() const
-    {
-      if (m_extractedDataAreDirty) this->extractData();
-      return m_l;
-    }
-
-    inline const UMatrixType& matrixU() const
-    {
-      if (m_extractedDataAreDirty) this->extractData();
-      return m_u;
-    }
-
-    inline const IntColVectorType& permutationP() const
-    {
-      if (m_extractedDataAreDirty) this->extractData();
-      return m_p;
-    }
-
-    inline const IntRowVectorType& permutationQ() const
-    {
-      if (m_extractedDataAreDirty) this->extractData();
-      return m_q;
-    }
-    
-    Scalar determinant() const;
-    
-  protected:
-    
-    using Base::m_matrix;
-    using Base::m_sluOptions;
-    using Base::m_sluA;
-    using Base::m_sluB;
-    using Base::m_sluX;
-    using Base::m_p;
-    using Base::m_q;
-    using Base::m_sluEtree;
-    using Base::m_sluEqued;
-    using Base::m_sluRscale;
-    using Base::m_sluCscale;
-    using Base::m_sluL;
-    using Base::m_sluU;
-    using Base::m_sluStat;
-    using Base::m_sluFerr;
-    using Base::m_sluBerr;
-    using Base::m_l;
-    using Base::m_u;
-    
-    using Base::m_analysisIsOk;
-    using Base::m_factorizationIsOk;
-    using Base::m_extractedDataAreDirty;
-    using Base::m_isInitialized;
-    using Base::m_info;
-    
-    void init()
-    {
-      Base::init();
-      
-      set_default_options(&this->m_sluOptions);
-      m_sluOptions.PrintStat        = NO;
-      m_sluOptions.ConditionNumber  = NO;
-      m_sluOptions.Trans            = NOTRANS;
-      m_sluOptions.ColPerm          = COLAMD;
-    }
-    
-    
-  private:
-    SuperLU(SuperLU& ) { }
-};
-
-template<typename MatrixType>
-void SuperLU<MatrixType>::factorize(const MatrixType& a)
-{
-  eigen_assert(m_analysisIsOk && "You must first call analyzePattern()");
-  if(!m_analysisIsOk)
-  {
-    m_info = InvalidInput;
-    return;
-  }
-  
-  this->initFactorization(a);
-  
-  m_sluOptions.ColPerm = COLAMD;
-  int info = 0;
-  RealScalar recip_pivot_growth, rcond;
-  RealScalar ferr, berr;
-
-  StatInit(&m_sluStat);
-  SuperLU_gssvx(&m_sluOptions, &m_sluA, m_q.data(), m_p.data(), &m_sluEtree[0],
-                &m_sluEqued, &m_sluRscale[0], &m_sluCscale[0],
-                &m_sluL, &m_sluU,
-                NULL, 0,
-                &m_sluB, &m_sluX,
-                &recip_pivot_growth, &rcond,
-                &ferr, &berr,
-                &m_sluStat, &info, Scalar());
-  StatFree(&m_sluStat);
-
-  m_extractedDataAreDirty = true;
-
-  // FIXME how to better check for errors ???
-  m_info = info == 0 ? Success : NumericalIssue;
-  m_factorizationIsOk = true;
-}
-
-template<typename MatrixType>
-template<typename Rhs,typename Dest>
-void SuperLU<MatrixType>::_solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest>& x) const
-{
-  eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or analyzePattern()/factorize()");
-
-  const Index rhsCols = b.cols();
-  eigen_assert(m_matrix.rows()==b.rows());
-
-  m_sluOptions.Trans = NOTRANS;
-  m_sluOptions.Fact = FACTORED;
-  m_sluOptions.IterRefine = NOREFINE;
-  
-
-  m_sluFerr.resize(rhsCols);
-  m_sluBerr.resize(rhsCols);
-  
-  Ref<const Matrix<typename Rhs::Scalar,Dynamic,Dynamic,ColMajor> > b_ref(b);
-  Ref<const Matrix<typename Dest::Scalar,Dynamic,Dynamic,ColMajor> > x_ref(x);
-  
-  m_sluB = SluMatrix::Map(b_ref.const_cast_derived());
-  m_sluX = SluMatrix::Map(x_ref.const_cast_derived());
-  
-  typename Rhs::PlainObject b_cpy;
-  if(m_sluEqued!='N')
-  {
-    b_cpy = b;
-    m_sluB = SluMatrix::Map(b_cpy.const_cast_derived());  
-  }
-
-  StatInit(&m_sluStat);
-  int info = 0;
-  RealScalar recip_pivot_growth, rcond;
-  SuperLU_gssvx(&m_sluOptions, &m_sluA,
-                m_q.data(), m_p.data(),
-                &m_sluEtree[0], &m_sluEqued,
-                &m_sluRscale[0], &m_sluCscale[0],
-                &m_sluL, &m_sluU,
-                NULL, 0,
-                &m_sluB, &m_sluX,
-                &recip_pivot_growth, &rcond,
-                &m_sluFerr[0], &m_sluBerr[0],
-                &m_sluStat, &info, Scalar());
-  StatFree(&m_sluStat);
-  
-  if(x.derived().data() != x_ref.data())
-    x = x_ref;
-  
-  m_info = info==0 ? Success : NumericalIssue;
-}
-
-// the code of this extractData() function has been adapted from the SuperLU's Matlab support code,
-//
-//  Copyright (c) 1994 by Xerox Corporation.  All rights reserved.
-//
-//  THIS MATERIAL IS PROVIDED AS IS, WITH ABSOLUTELY NO WARRANTY
-//  EXPRESSED OR IMPLIED.  ANY USE IS AT YOUR OWN RISK.
-//
-template<typename MatrixType, typename Derived>
-void SuperLUBase<MatrixType,Derived>::extractData() const
-{
-  eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for extracting factors, you must first call either compute() or analyzePattern()/factorize()");
-  if (m_extractedDataAreDirty)
-  {
-    int         upper;
-    int         fsupc, istart, nsupr;
-    int         lastl = 0, lastu = 0;
-    SCformat    *Lstore = static_cast<SCformat*>(m_sluL.Store);
-    NCformat    *Ustore = static_cast<NCformat*>(m_sluU.Store);
-    Scalar      *SNptr;
-
-    const Index size = m_matrix.rows();
-    m_l.resize(size,size);
-    m_l.resizeNonZeros(Lstore->nnz);
-    m_u.resize(size,size);
-    m_u.resizeNonZeros(Ustore->nnz);
-
-    int* Lcol = m_l.outerIndexPtr();
-    int* Lrow = m_l.innerIndexPtr();
-    Scalar* Lval = m_l.valuePtr();
-
-    int* Ucol = m_u.outerIndexPtr();
-    int* Urow = m_u.innerIndexPtr();
-    Scalar* Uval = m_u.valuePtr();
-
-    Ucol[0] = 0;
-    Ucol[0] = 0;
-
-    /* for each supernode */
-    for (int k = 0; k <= Lstore->nsuper; ++k)
-    {
-      fsupc   = L_FST_SUPC(k);
-      istart  = L_SUB_START(fsupc);
-      nsupr   = L_SUB_START(fsupc+1) - istart;
-      upper   = 1;
-
-      /* for each column in the supernode */
-      for (int j = fsupc; j < L_FST_SUPC(k+1); ++j)
-      {
-        SNptr = &((Scalar*)Lstore->nzval)[L_NZ_START(j)];
-
-        /* Extract U */
-        for (int i = U_NZ_START(j); i < U_NZ_START(j+1); ++i)
-        {
-          Uval[lastu] = ((Scalar*)Ustore->nzval)[i];
-          /* Matlab doesn't like explicit zero. */
-          if (Uval[lastu] != 0.0)
-            Urow[lastu++] = U_SUB(i);
-        }
-        for (int i = 0; i < upper; ++i)
-        {
-          /* upper triangle in the supernode */
-          Uval[lastu] = SNptr[i];
-          /* Matlab doesn't like explicit zero. */
-          if (Uval[lastu] != 0.0)
-            Urow[lastu++] = L_SUB(istart+i);
-        }
-        Ucol[j+1] = lastu;
-
-        /* Extract L */
-        Lval[lastl] = 1.0; /* unit diagonal */
-        Lrow[lastl++] = L_SUB(istart + upper - 1);
-        for (int i = upper; i < nsupr; ++i)
-        {
-          Lval[lastl] = SNptr[i];
-          /* Matlab doesn't like explicit zero. */
-          if (Lval[lastl] != 0.0)
-            Lrow[lastl++] = L_SUB(istart+i);
-        }
-        Lcol[j+1] = lastl;
-
-        ++upper;
-      } /* for j ... */
-
-    } /* for k ... */
-
-    // squeeze the matrices :
-    m_l.resizeNonZeros(lastl);
-    m_u.resizeNonZeros(lastu);
-
-    m_extractedDataAreDirty = false;
-  }
-}
-
-template<typename MatrixType>
-typename SuperLU<MatrixType>::Scalar SuperLU<MatrixType>::determinant() const
-{
-  eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for computing the determinant, you must first call either compute() or analyzePattern()/factorize()");
-  
-  if (m_extractedDataAreDirty)
-    this->extractData();
-
-  Scalar det = Scalar(1);
-  for (int j=0; j<m_u.cols(); ++j)
-  {
-    if (m_u.outerIndexPtr()[j+1]-m_u.outerIndexPtr()[j] > 0)
-    {
-      int lastId = m_u.outerIndexPtr()[j+1]-1;
-      eigen_assert(m_u.innerIndexPtr()[lastId]<=j);
-      if (m_u.innerIndexPtr()[lastId]==j)
-        det *= m_u.valuePtr()[lastId];
-    }
-  }
-  if(PermutationMap(m_p.data(),m_p.size()).determinant()*PermutationMap(m_q.data(),m_q.size()).determinant()<0)
-    det = -det;
-  if(m_sluEqued!='N')
-    return det/m_sluRscale.prod()/m_sluCscale.prod();
-  else
-    return det;
-}
-
-#ifdef EIGEN_PARSED_BY_DOXYGEN
-#define EIGEN_SUPERLU_HAS_ILU
-#endif
-
-#ifdef EIGEN_SUPERLU_HAS_ILU
-
-/** \ingroup SuperLUSupport_Module
-  * \class SuperILU
-  * \brief A sparse direct \b incomplete LU factorization and solver based on the SuperLU library
-  *
-  * This class allows to solve for an approximate solution of A.X = B sparse linear problems via an incomplete LU factorization
-  * using the SuperLU library. This class is aimed to be used as a preconditioner of the iterative linear solvers.
-  *
-  * \warning This class is only for the 4.x versions of SuperLU. The 3.x and 5.x versions are not supported.
-  *
-  * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
-  *
-  * \implsparsesolverconcept
-  *
-  * \sa \ref TutorialSparseSolverConcept, class IncompleteLUT, class ConjugateGradient, class BiCGSTAB
-  */
-
-template<typename _MatrixType>
-class SuperILU : public SuperLUBase<_MatrixType,SuperILU<_MatrixType> >
-{
-  public:
-    typedef SuperLUBase<_MatrixType,SuperILU> Base;
-    typedef _MatrixType MatrixType;
-    typedef typename Base::Scalar Scalar;
-    typedef typename Base::RealScalar RealScalar;
-
-  public:
-    using Base::_solve_impl;
-
-    SuperILU() : Base() { init(); }
-
-    SuperILU(const MatrixType& matrix) : Base()
-    {
-      init();
-      Base::compute(matrix);
-    }
-
-    ~SuperILU()
-    {
-    }
-    
-    /** Performs a symbolic decomposition on the sparcity of \a matrix.
-      *
-      * This function is particularly useful when solving for several problems having the same structure.
-      * 
-      * \sa factorize()
-      */
-    void analyzePattern(const MatrixType& matrix)
-    {
-      Base::analyzePattern(matrix);
-    }
-    
-    /** Performs a numeric decomposition of \a matrix
-      *
-      * The given matrix must has the same sparcity than the matrix on which the symbolic decomposition has been performed.
-      *
-      * \sa analyzePattern()
-      */
-    void factorize(const MatrixType& matrix);
-    
-    #ifndef EIGEN_PARSED_BY_DOXYGEN
-    /** \internal */
-    template<typename Rhs,typename Dest>
-    void _solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const;
-    #endif // EIGEN_PARSED_BY_DOXYGEN
-    
-  protected:
-    
-    using Base::m_matrix;
-    using Base::m_sluOptions;
-    using Base::m_sluA;
-    using Base::m_sluB;
-    using Base::m_sluX;
-    using Base::m_p;
-    using Base::m_q;
-    using Base::m_sluEtree;
-    using Base::m_sluEqued;
-    using Base::m_sluRscale;
-    using Base::m_sluCscale;
-    using Base::m_sluL;
-    using Base::m_sluU;
-    using Base::m_sluStat;
-    using Base::m_sluFerr;
-    using Base::m_sluBerr;
-    using Base::m_l;
-    using Base::m_u;
-    
-    using Base::m_analysisIsOk;
-    using Base::m_factorizationIsOk;
-    using Base::m_extractedDataAreDirty;
-    using Base::m_isInitialized;
-    using Base::m_info;
-
-    void init()
-    {
-      Base::init();
-      
-      ilu_set_default_options(&m_sluOptions);
-      m_sluOptions.PrintStat        = NO;
-      m_sluOptions.ConditionNumber  = NO;
-      m_sluOptions.Trans            = NOTRANS;
-      m_sluOptions.ColPerm          = MMD_AT_PLUS_A;
-      
-      // no attempt to preserve column sum
-      m_sluOptions.ILU_MILU = SILU;
-      // only basic ILU(k) support -- no direct control over memory consumption
-      // better to use ILU_DropRule = DROP_BASIC | DROP_AREA
-      // and set ILU_FillFactor to max memory growth
-      m_sluOptions.ILU_DropRule = DROP_BASIC;
-      m_sluOptions.ILU_DropTol = NumTraits<Scalar>::dummy_precision()*10;
-    }
-    
-  private:
-    SuperILU(SuperILU& ) { }
-};
-
-template<typename MatrixType>
-void SuperILU<MatrixType>::factorize(const MatrixType& a)
-{
-  eigen_assert(m_analysisIsOk && "You must first call analyzePattern()");
-  if(!m_analysisIsOk)
-  {
-    m_info = InvalidInput;
-    return;
-  }
-  
-  this->initFactorization(a);
-
-  int info = 0;
-  RealScalar recip_pivot_growth, rcond;
-
-  StatInit(&m_sluStat);
-  SuperLU_gsisx(&m_sluOptions, &m_sluA, m_q.data(), m_p.data(), &m_sluEtree[0],
-                &m_sluEqued, &m_sluRscale[0], &m_sluCscale[0],
-                &m_sluL, &m_sluU,
-                NULL, 0,
-                &m_sluB, &m_sluX,
-                &recip_pivot_growth, &rcond,
-                &m_sluStat, &info, Scalar());
-  StatFree(&m_sluStat);
-
-  // FIXME how to better check for errors ???
-  m_info = info == 0 ? Success : NumericalIssue;
-  m_factorizationIsOk = true;
-}
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-template<typename MatrixType>
-template<typename Rhs,typename Dest>
-void SuperILU<MatrixType>::_solve_impl(const MatrixBase<Rhs> &b, MatrixBase<Dest>& x) const
-{
-  eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or analyzePattern()/factorize()");
-
-  const int rhsCols = b.cols();
-  eigen_assert(m_matrix.rows()==b.rows());
-
-  m_sluOptions.Trans = NOTRANS;
-  m_sluOptions.Fact = FACTORED;
-  m_sluOptions.IterRefine = NOREFINE;
-
-  m_sluFerr.resize(rhsCols);
-  m_sluBerr.resize(rhsCols);
-  
-  Ref<const Matrix<typename Rhs::Scalar,Dynamic,Dynamic,ColMajor> > b_ref(b);
-  Ref<const Matrix<typename Dest::Scalar,Dynamic,Dynamic,ColMajor> > x_ref(x);
-  
-  m_sluB = SluMatrix::Map(b_ref.const_cast_derived());
-  m_sluX = SluMatrix::Map(x_ref.const_cast_derived());
-
-  typename Rhs::PlainObject b_cpy;
-  if(m_sluEqued!='N')
-  {
-    b_cpy = b;
-    m_sluB = SluMatrix::Map(b_cpy.const_cast_derived());  
-  }
-  
-  int info = 0;
-  RealScalar recip_pivot_growth, rcond;
-
-  StatInit(&m_sluStat);
-  SuperLU_gsisx(&m_sluOptions, &m_sluA,
-                m_q.data(), m_p.data(),
-                &m_sluEtree[0], &m_sluEqued,
-                &m_sluRscale[0], &m_sluCscale[0],
-                &m_sluL, &m_sluU,
-                NULL, 0,
-                &m_sluB, &m_sluX,
-                &recip_pivot_growth, &rcond,
-                &m_sluStat, &info, Scalar());
-  StatFree(&m_sluStat);
-  
-  if(x.derived().data() != x_ref.data())
-    x = x_ref;
-
-  m_info = info==0 ? Success : NumericalIssue;
-}
-#endif
-
-#endif
-
-} // end namespace Eigen
-
-#endif // EIGEN_SUPERLUSUPPORT_H