scitex 2.0.0__py2.py3-none-any.whl → 2.1.0__py2.py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +53 -15
- scitex/__main__.py +72 -26
- scitex/__version__.py +1 -1
- scitex/_sh.py +145 -23
- scitex/ai/__init__.py +30 -16
- scitex/ai/_gen_ai/_Anthropic.py +5 -7
- scitex/ai/_gen_ai/_BaseGenAI.py +2 -2
- scitex/ai/_gen_ai/_DeepSeek.py +10 -2
- scitex/ai/_gen_ai/_Google.py +2 -2
- scitex/ai/_gen_ai/_Llama.py +2 -2
- scitex/ai/_gen_ai/_OpenAI.py +2 -2
- scitex/ai/_gen_ai/_PARAMS.py +51 -65
- scitex/ai/_gen_ai/_Perplexity.py +2 -2
- scitex/ai/_gen_ai/__init__.py +25 -14
- scitex/ai/_gen_ai/_format_output_func.py +4 -4
- scitex/ai/classification/{classifier_server.py → Classifier.py} +5 -5
- scitex/ai/classification/CrossValidationExperiment.py +374 -0
- scitex/ai/classification/__init__.py +43 -4
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +281 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +773 -0
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +406 -0
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +1834 -0
- scitex/ai/classification/reporters/__init__.py +11 -0
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +1028 -0
- scitex/ai/classification/reporters/reporter_utils/__init__.py +80 -0
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +457 -0
- scitex/ai/classification/reporters/reporter_utils/data_models.py +313 -0
- scitex/ai/classification/reporters/reporter_utils/reporting.py +1056 -0
- scitex/ai/classification/reporters/reporter_utils/storage.py +221 -0
- scitex/ai/classification/reporters/reporter_utils/validation.py +395 -0
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +139 -0
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +84 -0
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
- scitex/ai/classification/timeseries/__init__.py +39 -0
- scitex/ai/classification/timeseries/_normalize_timestamp.py +436 -0
- scitex/ai/clustering/_umap.py +2 -2
- scitex/ai/feature_extraction/vit.py +1 -0
- scitex/ai/feature_selection/__init__.py +30 -0
- scitex/ai/feature_selection/feature_selection.py +364 -0
- scitex/ai/loss/multi_task_loss.py +1 -1
- scitex/ai/metrics/__init__.py +51 -4
- scitex/ai/metrics/_calc_bacc.py +61 -0
- scitex/ai/metrics/_calc_bacc_from_conf_mat.py +38 -0
- scitex/ai/metrics/_calc_clf_report.py +78 -0
- scitex/ai/metrics/_calc_conf_mat.py +93 -0
- scitex/ai/metrics/_calc_feature_importance.py +183 -0
- scitex/ai/metrics/_calc_mcc.py +61 -0
- scitex/ai/metrics/_calc_pre_rec_auc.py +116 -0
- scitex/ai/metrics/_calc_roc_auc.py +110 -0
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +490 -0
- scitex/ai/metrics/{silhoute_score_block.py → _calc_silhouette_score.py} +15 -8
- scitex/ai/metrics/_normalize_labels.py +83 -0
- scitex/ai/plt/__init__.py +47 -8
- scitex/ai/plt/{_conf_mat.py → _plot_conf_mat.py} +158 -87
- scitex/ai/plt/_plot_feature_importance.py +323 -0
- scitex/ai/plt/_plot_learning_curve.py +345 -0
- scitex/ai/plt/_plot_optuna_study.py +225 -0
- scitex/ai/plt/_plot_pre_rec_curve.py +290 -0
- scitex/ai/plt/_plot_roc_curve.py +255 -0
- scitex/ai/training/{learning_curve_logger.py → _LearningCurveLogger.py} +197 -213
- scitex/ai/training/__init__.py +2 -2
- scitex/ai/utils/grid_search.py +3 -3
- scitex/benchmark/__init__.py +52 -0
- scitex/benchmark/benchmark.py +400 -0
- scitex/benchmark/monitor.py +370 -0
- scitex/benchmark/profiler.py +297 -0
- scitex/browser/__init__.py +48 -0
- scitex/browser/automation/CookieHandler.py +216 -0
- scitex/browser/automation/__init__.py +7 -0
- scitex/browser/collaboration/__init__.py +55 -0
- scitex/browser/collaboration/auth_helpers.py +94 -0
- scitex/browser/collaboration/collaborative_agent.py +136 -0
- scitex/browser/collaboration/credential_manager.py +188 -0
- scitex/browser/collaboration/interactive_panel.py +400 -0
- scitex/browser/collaboration/persistent_browser.py +170 -0
- scitex/browser/collaboration/shared_session.py +383 -0
- scitex/browser/collaboration/standard_interactions.py +246 -0
- scitex/browser/collaboration/visual_feedback.py +181 -0
- scitex/browser/core/BrowserMixin.py +326 -0
- scitex/browser/core/ChromeProfileManager.py +446 -0
- scitex/browser/core/__init__.py +9 -0
- scitex/browser/debugging/__init__.py +18 -0
- scitex/browser/debugging/_browser_logger.py +657 -0
- scitex/browser/debugging/_highlight_element.py +143 -0
- scitex/browser/debugging/_show_grid.py +154 -0
- scitex/browser/interaction/__init__.py +24 -0
- scitex/browser/interaction/click_center.py +149 -0
- scitex/browser/interaction/click_with_fallbacks.py +206 -0
- scitex/browser/interaction/close_popups.py +498 -0
- scitex/browser/interaction/fill_with_fallbacks.py +209 -0
- scitex/browser/pdf/__init__.py +14 -0
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +200 -0
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +198 -0
- scitex/browser/remote/CaptchaHandler.py +434 -0
- scitex/browser/remote/ZenRowsAPIClient.py +347 -0
- scitex/browser/remote/ZenRowsBrowserManager.py +570 -0
- scitex/browser/remote/__init__.py +11 -0
- scitex/browser/stealth/HumanBehavior.py +344 -0
- scitex/browser/stealth/StealthManager.py +1008 -0
- scitex/browser/stealth/__init__.py +9 -0
- scitex/browser/template.py +122 -0
- scitex/capture/__init__.py +110 -0
- scitex/capture/__main__.py +25 -0
- scitex/capture/capture.py +848 -0
- scitex/capture/cli.py +233 -0
- scitex/capture/gif.py +344 -0
- scitex/capture/mcp_server.py +961 -0
- scitex/capture/session.py +70 -0
- scitex/capture/utils.py +705 -0
- scitex/cli/__init__.py +17 -0
- scitex/cli/cloud.py +447 -0
- scitex/cli/main.py +42 -0
- scitex/cli/scholar.py +280 -0
- scitex/context/_suppress_output.py +5 -3
- scitex/db/__init__.py +30 -3
- scitex/db/__main__.py +75 -0
- scitex/db/_check_health.py +381 -0
- scitex/db/_delete_duplicates.py +25 -386
- scitex/db/_inspect.py +335 -114
- scitex/db/_inspect_optimized.py +301 -0
- scitex/db/{_PostgreSQL.py → _postgresql/_PostgreSQL.py} +3 -3
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BackupMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BatchMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BlobMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ConnectionMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_MaintenanceMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_QueryMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_SchemaMixin.py +1 -1
- scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TransactionMixin.py +1 -1
- scitex/db/_postgresql/__init__.py +6 -0
- scitex/db/_sqlite3/_SQLite3.py +210 -0
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +581 -0
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +517 -0
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_BatchMixin.py +1 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +281 -0
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +548 -0
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +583 -0
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ConnectionMixin.py +29 -13
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +583 -0
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ImportExportMixin.py +1 -1
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_IndexMixin.py +1 -1
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_MaintenanceMixin.py +2 -1
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_QueryMixin.py +37 -10
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_RowMixin.py +46 -6
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TableMixin.py +56 -10
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TransactionMixin.py +1 -1
- scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/__init__.py +14 -2
- scitex/db/_sqlite3/__init__.py +7 -0
- scitex/db/_sqlite3/_delete_duplicates.py +274 -0
- scitex/decorators/__init__.py +2 -0
- scitex/decorators/_cache_disk.py +13 -5
- scitex/decorators/_cache_disk_async.py +49 -0
- scitex/decorators/_deprecated.py +175 -10
- scitex/decorators/_timeout.py +1 -1
- scitex/dev/_analyze_code_flow.py +2 -2
- scitex/dict/_DotDict.py +73 -15
- scitex/dict/_DotDict_v01-not-handling-recursive-instantiations.py +442 -0
- scitex/dict/_DotDict_v02-not-serializing-Path-object.py +446 -0
- scitex/dict/__init__.py +2 -0
- scitex/dict/_flatten.py +27 -0
- scitex/dsp/_crop.py +2 -2
- scitex/dsp/_demo_sig.py +2 -2
- scitex/dsp/_detect_ripples.py +2 -2
- scitex/dsp/_hilbert.py +2 -2
- scitex/dsp/_listen.py +6 -6
- scitex/dsp/_modulation_index.py +2 -2
- scitex/dsp/_pac.py +1 -1
- scitex/dsp/_psd.py +2 -2
- scitex/dsp/_resample.py +2 -1
- scitex/dsp/_time.py +3 -2
- scitex/dsp/_wavelet.py +3 -2
- scitex/dsp/add_noise.py +2 -2
- scitex/dsp/example.py +1 -0
- scitex/dsp/filt.py +10 -9
- scitex/dsp/template.py +3 -2
- scitex/dsp/utils/_differential_bandpass_filters.py +1 -1
- scitex/dsp/utils/pac.py +2 -2
- scitex/dt/_normalize_timestamp.py +432 -0
- scitex/errors.py +572 -0
- scitex/gen/_DimHandler.py +2 -2
- scitex/gen/__init__.py +37 -7
- scitex/gen/_deprecated_close.py +80 -0
- scitex/gen/_deprecated_start.py +26 -0
- scitex/gen/_detect_environment.py +152 -0
- scitex/gen/_detect_notebook_path.py +169 -0
- scitex/gen/_embed.py +6 -2
- scitex/gen/_get_notebook_path.py +257 -0
- scitex/gen/_less.py +1 -1
- scitex/gen/_list_packages.py +2 -2
- scitex/gen/_norm.py +44 -9
- scitex/gen/_norm_cache.py +269 -0
- scitex/gen/_src.py +3 -5
- scitex/gen/_title_case.py +3 -3
- scitex/io/__init__.py +28 -6
- scitex/io/_glob.py +13 -7
- scitex/io/_load.py +108 -21
- scitex/io/_load_cache.py +303 -0
- scitex/io/_load_configs.py +40 -15
- scitex/io/{_H5Explorer.py → _load_modules/_H5Explorer.py} +80 -17
- scitex/io/_load_modules/_ZarrExplorer.py +114 -0
- scitex/io/_load_modules/_bibtex.py +207 -0
- scitex/io/_load_modules/_hdf5.py +53 -178
- scitex/io/_load_modules/_json.py +5 -3
- scitex/io/_load_modules/_pdf.py +871 -16
- scitex/io/_load_modules/_sqlite3.py +15 -0
- scitex/io/_load_modules/_txt.py +41 -12
- scitex/io/_load_modules/_yaml.py +4 -3
- scitex/io/_load_modules/_zarr.py +126 -0
- scitex/io/_save.py +429 -171
- scitex/io/_save_modules/__init__.py +6 -0
- scitex/io/_save_modules/_bibtex.py +194 -0
- scitex/io/_save_modules/_csv.py +8 -4
- scitex/io/_save_modules/_excel.py +174 -15
- scitex/io/_save_modules/_hdf5.py +251 -226
- scitex/io/_save_modules/_image.py +1 -3
- scitex/io/_save_modules/_json.py +49 -4
- scitex/io/_save_modules/_listed_dfs_as_csv.py +1 -3
- scitex/io/_save_modules/_listed_scalars_as_csv.py +1 -3
- scitex/io/_save_modules/_tex.py +277 -0
- scitex/io/_save_modules/_yaml.py +42 -3
- scitex/io/_save_modules/_zarr.py +160 -0
- scitex/io/utils/__init__.py +20 -0
- scitex/io/utils/h5_to_zarr.py +616 -0
- scitex/linalg/_geometric_median.py +6 -2
- scitex/{gen/_tee.py → logging/_Tee.py} +43 -84
- scitex/logging/__init__.py +122 -0
- scitex/logging/_config.py +158 -0
- scitex/logging/_context.py +103 -0
- scitex/logging/_formatters.py +128 -0
- scitex/logging/_handlers.py +64 -0
- scitex/logging/_levels.py +35 -0
- scitex/logging/_logger.py +163 -0
- scitex/logging/_print_capture.py +95 -0
- scitex/ml/__init__.py +69 -0
- scitex/{ai/genai/anthropic.py → ml/_gen_ai/_Anthropic.py} +13 -19
- scitex/{ai/genai/base_genai.py → ml/_gen_ai/_BaseGenAI.py} +5 -5
- scitex/{ai/genai/deepseek.py → ml/_gen_ai/_DeepSeek.py} +11 -16
- scitex/{ai/genai/google.py → ml/_gen_ai/_Google.py} +7 -15
- scitex/{ai/genai/groq.py → ml/_gen_ai/_Groq.py} +1 -8
- scitex/{ai/genai/llama.py → ml/_gen_ai/_Llama.py} +3 -16
- scitex/{ai/genai/openai.py → ml/_gen_ai/_OpenAI.py} +3 -3
- scitex/{ai/genai/params.py → ml/_gen_ai/_PARAMS.py} +51 -65
- scitex/{ai/genai/perplexity.py → ml/_gen_ai/_Perplexity.py} +3 -14
- scitex/ml/_gen_ai/__init__.py +43 -0
- scitex/{ai/genai/calc_cost.py → ml/_gen_ai/_calc_cost.py} +1 -1
- scitex/{ai/genai/format_output_func.py → ml/_gen_ai/_format_output_func.py} +4 -4
- scitex/{ai/genai/genai_factory.py → ml/_gen_ai/_genai_factory.py} +8 -8
- scitex/ml/activation/__init__.py +8 -0
- scitex/ml/activation/_define.py +11 -0
- scitex/{ai/classifier_server.py → ml/classification/Classifier.py} +5 -5
- scitex/ml/classification/CrossValidationExperiment.py +374 -0
- scitex/ml/classification/__init__.py +46 -0
- scitex/ml/classification/reporters/_BaseClassificationReporter.py +281 -0
- scitex/ml/classification/reporters/_ClassificationReporter.py +773 -0
- scitex/ml/classification/reporters/_MultiClassificationReporter.py +406 -0
- scitex/ml/classification/reporters/_SingleClassificationReporter.py +1834 -0
- scitex/ml/classification/reporters/__init__.py +11 -0
- scitex/ml/classification/reporters/reporter_utils/_Plotter.py +1028 -0
- scitex/ml/classification/reporters/reporter_utils/__init__.py +80 -0
- scitex/ml/classification/reporters/reporter_utils/aggregation.py +457 -0
- scitex/ml/classification/reporters/reporter_utils/data_models.py +313 -0
- scitex/ml/classification/reporters/reporter_utils/reporting.py +1056 -0
- scitex/ml/classification/reporters/reporter_utils/storage.py +221 -0
- scitex/ml/classification/reporters/reporter_utils/validation.py +395 -0
- scitex/ml/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
- scitex/ml/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
- scitex/ml/classification/timeseries/_TimeSeriesMetadata.py +139 -0
- scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
- scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
- scitex/ml/classification/timeseries/_TimeSeriesStrategy.py +84 -0
- scitex/ml/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
- scitex/ml/classification/timeseries/__init__.py +39 -0
- scitex/ml/classification/timeseries/_normalize_timestamp.py +436 -0
- scitex/ml/clustering/__init__.py +11 -0
- scitex/ml/clustering/_pca.py +115 -0
- scitex/ml/clustering/_umap.py +376 -0
- scitex/ml/feature_extraction/__init__.py +56 -0
- scitex/ml/feature_extraction/vit.py +149 -0
- scitex/ml/feature_selection/__init__.py +30 -0
- scitex/ml/feature_selection/feature_selection.py +364 -0
- scitex/ml/loss/_L1L2Losses.py +34 -0
- scitex/ml/loss/__init__.py +12 -0
- scitex/ml/loss/multi_task_loss.py +47 -0
- scitex/ml/metrics/__init__.py +56 -0
- scitex/ml/metrics/_calc_bacc.py +61 -0
- scitex/ml/metrics/_calc_bacc_from_conf_mat.py +38 -0
- scitex/ml/metrics/_calc_clf_report.py +78 -0
- scitex/ml/metrics/_calc_conf_mat.py +93 -0
- scitex/ml/metrics/_calc_feature_importance.py +183 -0
- scitex/ml/metrics/_calc_mcc.py +61 -0
- scitex/ml/metrics/_calc_pre_rec_auc.py +116 -0
- scitex/ml/metrics/_calc_roc_auc.py +110 -0
- scitex/ml/metrics/_calc_seizure_prediction_metrics.py +490 -0
- scitex/ml/metrics/_calc_silhouette_score.py +503 -0
- scitex/ml/metrics/_normalize_labels.py +83 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/__init__.py +0 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/__init__.py +3 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +207 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +238 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +215 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/rangerqh.py +184 -0
- scitex/ml/optim/Ranger_Deep_Learning_Optimizer/setup.py +24 -0
- scitex/ml/optim/__init__.py +13 -0
- scitex/ml/optim/_get_set.py +31 -0
- scitex/ml/optim/_optimizers.py +71 -0
- scitex/ml/plt/__init__.py +60 -0
- scitex/ml/plt/_plot_conf_mat.py +663 -0
- scitex/ml/plt/_plot_feature_importance.py +323 -0
- scitex/ml/plt/_plot_learning_curve.py +345 -0
- scitex/ml/plt/_plot_optuna_study.py +225 -0
- scitex/ml/plt/_plot_pre_rec_curve.py +290 -0
- scitex/ml/plt/_plot_roc_curve.py +255 -0
- scitex/ml/sk/__init__.py +11 -0
- scitex/ml/sk/_clf.py +58 -0
- scitex/ml/sk/_to_sktime.py +100 -0
- scitex/ml/sklearn/__init__.py +26 -0
- scitex/ml/sklearn/clf.py +58 -0
- scitex/ml/sklearn/to_sktime.py +100 -0
- scitex/{ai/training/early_stopping.py → ml/training/_EarlyStopping.py} +1 -2
- scitex/{ai → ml/training}/_LearningCurveLogger.py +198 -242
- scitex/ml/training/__init__.py +7 -0
- scitex/ml/utils/__init__.py +22 -0
- scitex/ml/utils/_check_params.py +50 -0
- scitex/ml/utils/_default_dataset.py +46 -0
- scitex/ml/utils/_format_samples_for_sktime.py +26 -0
- scitex/ml/utils/_label_encoder.py +134 -0
- scitex/ml/utils/_merge_labels.py +22 -0
- scitex/ml/utils/_sliding_window_data_augmentation.py +11 -0
- scitex/ml/utils/_under_sample.py +51 -0
- scitex/ml/utils/_verify_n_gpus.py +16 -0
- scitex/ml/utils/grid_search.py +148 -0
- scitex/nn/_BNet.py +15 -9
- scitex/nn/_Filters.py +2 -2
- scitex/nn/_ModulationIndex.py +2 -2
- scitex/nn/_PAC.py +1 -1
- scitex/nn/_Spectrogram.py +12 -3
- scitex/nn/__init__.py +9 -10
- scitex/path/__init__.py +18 -0
- scitex/path/_clean.py +4 -0
- scitex/path/_find.py +9 -4
- scitex/path/_symlink.py +348 -0
- scitex/path/_version.py +4 -3
- scitex/pd/__init__.py +2 -0
- scitex/pd/_get_unique.py +99 -0
- scitex/plt/__init__.py +114 -5
- scitex/plt/_subplots/_AxesWrapper.py +1 -3
- scitex/plt/_subplots/_AxisWrapper.py +7 -3
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +47 -13
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +160 -2
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +26 -4
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +322 -0
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- /scitex/{stats → stats_v01}/_multiple_corrections.py +0 -0
- /scitex/{stats → stats_v01}/_nan_stats.py +0 -0
- /scitex/{stats → stats_v01}/_p2stars_wrapper.py +0 -0
- /scitex/{stats → stats_v01}/_statistical_tests.py +0 -0
- /scitex/{stats/desc/_describe.py → stats_v01/desc/_describe_v01-20250920_145731.py} +0 -0
- /scitex/{stats/desc/_real.py → stats_v01/desc/_real_v01-20250920_145731.py} +0 -0
- /scitex/{stats → stats_v01}/multiple/__init__.py +0 -0
- /scitex/{stats → stats_v01}/multiple/_bonferroni_correction.py +0 -0
- /scitex/{stats → stats_v01}/multiple/_fdr_correction.py +0 -0
- /scitex/{stats → stats_v01}/multiple/_multicompair.py +0 -0
- /scitex/{stats → stats_v01}/tests/__corr_test.py +0 -0
- /scitex/{stats → stats_v01}/tests/__corr_test_multi.py +0 -0
- /scitex/{stats → stats_v01}/tests/__corr_test_single.py +0 -0
- /scitex/{stats → stats_v01}/tests/__init__.py +0 -0
- /scitex/{stats → stats_v01}/tests/_brunner_munzel_test.py +0 -0
- /scitex/{stats → stats_v01}/tests/_nocorrelation_test.py +0 -0
- /scitex/{stats → stats_v01}/tests/_smirnov_grubbs.py +0 -0
- {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/top_level.txt +0 -0
scitex/decorators/_cache_disk.py
CHANGED
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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# Timestamp: "2025-10-11 20:31:13 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex_repo/src/scitex/decorators/_cache_disk.py
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# ----------------------------------------
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from __future__ import annotations
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import os
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__FILE__ = (
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"./src/scitex/decorators/_cache_disk.py"
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__DIR__ = os.path.dirname(__FILE__)
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# ----------------------------------------
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# Time-stamp: "2024-11-07 06:08:45 (ywatanabe)"
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# File: ./scitex_repo/src/scitex/decorators/_cache_disk.py
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import functools
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import os
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from joblib import Memory as _Memory
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def expensive_function(x):
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return x ** 2
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"""
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scitex_dir = os.getenv("
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cache_dir = scitex_dir
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scitex_dir = os.getenv("SCITEX_DIR", "~/.scitex")
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cache_dir = os.path.join(scitex_dir, "cache", "functions")
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memory = _Memory(cache_dir, verbose=0)
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@functools.wraps(func)
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# EOF
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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# Timestamp: "2025-10-11 20:30:56 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex_repo/src/scitex/decorators/_cache_disk_async.py
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# ----------------------------------------
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from __future__ import annotations
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import os
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__FILE__ = (
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"./src/scitex/decorators/_cache_disk_async.py"
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__DIR__ = os.path.dirname(__FILE__)
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# ----------------------------------------
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"""Async disk caching decorator using joblib.Memory."""
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import asyncio
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import functools
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from joblib import Memory as _Memory
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def cache_disk_async(func):
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"""Disk caching decorator for async functions.
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Usage:
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@cache_disk_async
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async def expensive_async_function(x):
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await asyncio.sleep(1)
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return x ** 2
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"""
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scitex_dir = os.getenv("SCITEX_DIR", os.path.expanduser("~/.scitex"))
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cache_dir = os.path.join(scitex_dir, "cache", "functions")
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memory = _Memory(cache_dir, verbose=0)
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# Create sync wrapper for joblib
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def sync_wrapper(*args, **kwargs):
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return asyncio.run(func(*args, **kwargs))
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cached_sync = memory.cache(sync_wrapper)
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+
@functools.wraps(func)
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async def async_wrapper(*args, **kwargs):
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# Run cached sync version in executor to avoid blocking
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loop = asyncio.get_event_loop()
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result = await loop.run_in_executor(None, lambda: cached_sync(*args, **kwargs))
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return result
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return async_wrapper
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# EOF
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scitex/decorators/_deprecated.py
CHANGED
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#!/usr/bin/env python3
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# Timestamp: "2025-08-21 20:57:29 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex_repo/src/scitex/decorators/_deprecated.py
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# ----------------------------------------
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from __future__ import annotations
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import os
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__FILE__ = __file__
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__DIR__ = os.path.dirname(__FILE__)
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# ----------------------------------------
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import functools
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import importlib
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import warnings
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3
14
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4
15
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-
def deprecated(reason=None):
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def deprecated(reason=None, forward_to=None):
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6
17
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"""
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18
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A decorator to mark functions as deprecated. It will result in a warning being emitted
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8
19
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when the function is used.
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9
20
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10
21
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Args:
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11
22
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reason (str): A human-readable string explaining why this function was deprecated.
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23
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forward_to (str): Optional module path to forward calls to (e.g., "..session.start").
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24
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If provided, calls will be forwarded to the new function instead of
|
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25
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executing the original deprecated function.
|
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12
26
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"""
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27
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14
28
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def decorator(func):
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-
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17
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-
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29
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+
if forward_to:
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# Create a forwarding wrapper with auto-generated docstring
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31
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+
@functools.wraps(func)
|
|
32
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+
def new_func(*args, **kwargs):
|
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33
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+
warnings.warn(
|
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34
|
+
f"{func.__name__} is deprecated: {reason}",
|
|
35
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DeprecationWarning,
|
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36
|
+
stacklevel=2,
|
|
37
|
+
)
|
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38
|
+
# Dynamic import and call forwarding
|
|
39
|
+
module_path, function_name = forward_to.rsplit(".", 1)
|
|
40
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+
|
|
41
|
+
# Handle relative imports
|
|
42
|
+
if module_path.startswith(".."):
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43
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# Get the module where the function was defined (not the calling module)
|
|
44
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+
func_module = func.__module__
|
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45
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+
|
|
46
|
+
if func_module:
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47
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+
# Convert relative import to absolute based on the function's module
|
|
48
|
+
package_parts = func_module.split('.')
|
|
49
|
+
# Count the number of dots to determine how many levels to go up
|
|
50
|
+
level_count = 0
|
|
51
|
+
for char in module_path:
|
|
52
|
+
if char == '.':
|
|
53
|
+
level_count += 1
|
|
54
|
+
else:
|
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55
|
+
break
|
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56
|
+
|
|
57
|
+
# Remove the relative part and create absolute path
|
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58
|
+
if level_count > 0:
|
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59
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+
base_package_parts = package_parts[:-level_count]
|
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60
|
+
if base_package_parts:
|
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61
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+
base_package = '.'.join(base_package_parts)
|
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62
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+
relative_part = module_path.lstrip('.')
|
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63
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+
module_path = base_package + '.' + relative_part if relative_part else base_package
|
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64
|
+
else:
|
|
65
|
+
# Can't go up that many levels, fallback to absolute
|
|
66
|
+
module_path = module_path.lstrip('.')
|
|
67
|
+
|
|
68
|
+
try:
|
|
69
|
+
target_module = importlib.import_module(module_path)
|
|
70
|
+
target_function = getattr(target_module, function_name)
|
|
71
|
+
return target_function(*args, **kwargs)
|
|
72
|
+
except (ImportError, AttributeError) as e:
|
|
73
|
+
# Fallback to original function if forwarding fails
|
|
74
|
+
warnings.warn(
|
|
75
|
+
f"Failed to forward {func.__name__} to {forward_to}: {e}. "
|
|
76
|
+
f"Using original deprecated implementation.",
|
|
77
|
+
RuntimeWarning,
|
|
78
|
+
stacklevel=2,
|
|
79
|
+
)
|
|
80
|
+
return func(*args, **kwargs)
|
|
81
|
+
|
|
82
|
+
# Auto-generate docstring for forwarding wrapper with target function's docstring
|
|
83
|
+
original_name = func.__name__
|
|
84
|
+
new_location = forward_to.replace("..", "scitex.").lstrip(".")
|
|
85
|
+
|
|
86
|
+
# Try to get the target function's docstring
|
|
87
|
+
target_docstring = ""
|
|
88
|
+
try:
|
|
89
|
+
# Get the same target we'll forward to
|
|
90
|
+
target_module_path, target_function_name = forward_to.rsplit(".", 1)
|
|
91
|
+
|
|
92
|
+
# Handle relative imports for docstring retrieval
|
|
93
|
+
if target_module_path.startswith(".."):
|
|
94
|
+
func_module = func.__module__
|
|
95
|
+
if func_module:
|
|
96
|
+
package_parts = func_module.split('.')
|
|
97
|
+
level_count = 0
|
|
98
|
+
for char in target_module_path:
|
|
99
|
+
if char == '.':
|
|
100
|
+
level_count += 1
|
|
101
|
+
else:
|
|
102
|
+
break
|
|
103
|
+
|
|
104
|
+
if level_count > 0:
|
|
105
|
+
base_package_parts = package_parts[:-level_count]
|
|
106
|
+
if base_package_parts:
|
|
107
|
+
base_package = '.'.join(base_package_parts)
|
|
108
|
+
relative_part = target_module_path.lstrip('.')
|
|
109
|
+
target_module_path = base_package + '.' + relative_part if relative_part else base_package
|
|
110
|
+
else:
|
|
111
|
+
target_module_path = target_module_path.lstrip('.')
|
|
112
|
+
|
|
113
|
+
target_module = importlib.import_module(target_module_path)
|
|
114
|
+
target_function = getattr(target_module, target_function_name)
|
|
115
|
+
if target_function.__doc__:
|
|
116
|
+
target_docstring = target_function.__doc__.strip()
|
|
117
|
+
except (ImportError, AttributeError):
|
|
118
|
+
pass # Fall back to basic docstring if target can't be imported
|
|
119
|
+
|
|
120
|
+
# Create comprehensive docstring combining deprecation notice with target docs
|
|
121
|
+
if target_docstring:
|
|
122
|
+
forwarding_docstring = f"""**DEPRECATED: Use {new_location} instead**
|
|
23
123
|
|
|
24
|
-
|
|
124
|
+
{target_docstring}
|
|
125
|
+
|
|
126
|
+
Deprecation Notice
|
|
127
|
+
------------------
|
|
128
|
+
This function is deprecated and will be removed in a future version.
|
|
129
|
+
Use `{new_location}` instead. This wrapper forwards all calls to the new function
|
|
130
|
+
while displaying a deprecation warning.
|
|
131
|
+
|
|
132
|
+
Parameters
|
|
133
|
+
----------
|
|
134
|
+
*args : tuple
|
|
135
|
+
Positional arguments passed to {new_location}
|
|
136
|
+
**kwargs : dict
|
|
137
|
+
Keyword arguments passed to {new_location}
|
|
138
|
+
|
|
139
|
+
Returns
|
|
140
|
+
-------
|
|
141
|
+
Any
|
|
142
|
+
Same return value as {new_location}
|
|
143
|
+
|
|
144
|
+
Warns
|
|
145
|
+
-----
|
|
146
|
+
DeprecationWarning
|
|
147
|
+
Always warns that this function is deprecated
|
|
148
|
+
"""
|
|
149
|
+
else:
|
|
150
|
+
# Fallback if target docstring unavailable
|
|
151
|
+
forwarding_docstring = f"""**DEPRECATED: Use {new_location} instead**
|
|
152
|
+
|
|
153
|
+
This function provides backward compatibility for existing code that uses
|
|
154
|
+
{original_name}(). It forwards all calls to the new {new_location}
|
|
155
|
+
function while displaying a deprecation warning.
|
|
156
|
+
|
|
157
|
+
Parameters
|
|
158
|
+
----------
|
|
159
|
+
*args : tuple
|
|
160
|
+
Positional arguments passed to {new_location}
|
|
161
|
+
**kwargs : dict
|
|
162
|
+
Keyword arguments passed to {new_location}
|
|
163
|
+
|
|
164
|
+
Returns
|
|
165
|
+
-------
|
|
166
|
+
Any
|
|
167
|
+
Same return value as {new_location}
|
|
168
|
+
|
|
169
|
+
Warns
|
|
170
|
+
-----
|
|
171
|
+
DeprecationWarning
|
|
172
|
+
Always warns that this function is deprecated
|
|
173
|
+
"""
|
|
174
|
+
new_func.__doc__ = forwarding_docstring
|
|
175
|
+
return new_func
|
|
176
|
+
else:
|
|
177
|
+
# Original behavior for non-forwarding deprecation
|
|
178
|
+
@functools.wraps(func)
|
|
179
|
+
def new_func(*args, **kwargs):
|
|
180
|
+
warnings.warn(
|
|
181
|
+
f"{func.__name__} is deprecated: {reason}",
|
|
182
|
+
DeprecationWarning,
|
|
183
|
+
stacklevel=2,
|
|
184
|
+
)
|
|
185
|
+
return func(*args, **kwargs)
|
|
186
|
+
|
|
187
|
+
return new_func
|
|
25
188
|
|
|
26
189
|
return decorator
|
|
190
|
+
|
|
191
|
+
# EOF
|
scitex/decorators/_timeout.py
CHANGED
scitex/dev/_analyze_code_flow.py
CHANGED
|
@@ -263,7 +263,7 @@ if __name__ == "__main__":
|
|
|
263
263
|
|
|
264
264
|
import matplotlib.pyplot as plt
|
|
265
265
|
|
|
266
|
-
CONFIG, sys.stdout, sys.stderr, plt, CC = scitex.
|
|
266
|
+
CONFIG, sys.stdout, sys.stderr, plt, CC = scitex.session.start(
|
|
267
267
|
sys,
|
|
268
268
|
plt,
|
|
269
269
|
verbose=False,
|
|
@@ -272,7 +272,7 @@ if __name__ == "__main__":
|
|
|
272
272
|
|
|
273
273
|
exit_status = main(parse_args())
|
|
274
274
|
|
|
275
|
-
scitex.
|
|
275
|
+
scitex.session.close(
|
|
276
276
|
CONFIG,
|
|
277
277
|
verbose=False,
|
|
278
278
|
notify=False,
|
scitex/dict/_DotDict.py
CHANGED
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
#!/usr/bin/env python3
|
|
2
2
|
# -*- coding: utf-8 -*-
|
|
3
|
-
# Timestamp: "2025-
|
|
4
|
-
# File: /
|
|
3
|
+
# Timestamp: "2025-08-22 22:03:48 (ywatanabe)"
|
|
4
|
+
# File: /home/ywatanabe/proj/SciTeX-Code/src/scitex/dict/_DotDict.py
|
|
5
5
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# ----------------------------------------
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from __future__ import annotations
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import os
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__FILE__ = "./src/scitex/dict/_DotDict.py"
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__FILE__ = __file__
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__DIR__ = os.path.dirname(__FILE__)
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# ----------------------------------------
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@@ -23,13 +23,14 @@ class DotDict:
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# Avoids conflicts with keys named like standard methods ('keys', 'items', etc.)
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super().__setattr__("_data", {})
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if dictionary is not None:
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if
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if isinstance(dictionary, DotDict):
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dictionary = dictionary._data
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elif not isinstance(dictionary, dict):
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raise TypeError("Input must be a dictionary.")
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for key, value in dictionary.items():
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if isinstance(value, dict):
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if isinstance(value, dict) and not isinstance(value, DotDict):
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value = DotDict(value)
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# Use __setitem__ to populate data correctly
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self[key] = value
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# --- Attribute Access (for valid identifiers) ---
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@@ -55,9 +56,8 @@ class DotDict:
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if key == "_data" or key.startswith("_"):
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super().__setattr__(key, value)
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else:
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value = DotDict(value) # Convert dicts on the fly
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if isinstance(value, dict) and not isinstance(value, DotDict):
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value = DotDict(value)
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self._data[key] = value
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def __delattr__(self, key):
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def __setitem__(self, key, value):
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# Called for obj[key] = value
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if isinstance(value, dict):
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value = DotDict(value)
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if isinstance(value, dict) and not isinstance(value, DotDict):
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value = DotDict(value)
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self._data[key] = value
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def __delitem__(self, key):
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@@ -124,7 +124,9 @@ class DotDict:
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try:
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# Use the internal _data for representation
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return json.dumps(
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return json.dumps(
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self.to_dict(), indent=4, default=default_handler
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)
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except TypeError as e:
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# Fallback if default_handler still fails (e.g., complex recursion)
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return f"<DotDict object at {hex(id(self))}, contains: {list(self._data.keys())}> Error: {e}"
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@@ -199,7 +201,9 @@ class DotDict:
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"""
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# Mimic dict.pop behavior with optional default
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if len(args) > 1:
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raise TypeError(
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raise TypeError(
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f"pop expected at most 2 arguments, got {1 + len(args)}"
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)
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if key not in self._data:
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if args:
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return args[0] # Return default if provided
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@@ -247,6 +251,60 @@ class DotDict:
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# Return a sorted list of the combined unique names
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return sorted(list(standard_attrs.union(data_keys)))
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# --- Comparison Methods ---
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def __eq__(self, other):
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"""Check equality. Supports comparison with dict, DotDict, and scalar values."""
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if isinstance(other, DotDict):
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return self._data == other._data
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elif isinstance(other, dict):
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return self._data == other
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else:
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# For scalar comparison, compare against empty/falsy
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return False
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def __ne__(self, other):
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"""Check inequality."""
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return not self.__eq__(other)
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def __lt__(self, other):
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"""Less than comparison - delegate to _data or handle scalars."""
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if isinstance(other, (int, float)):
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# If comparing to scalar, treat empty as 0
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if len(self._data) == 0:
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return 0 < other
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# If single numeric value in total field, use it
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if "total" in self._data and isinstance(self._data["total"], (int, float)):
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return self._data["total"] < other
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# Otherwise not comparable
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return NotImplemented
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return NotImplemented
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def __le__(self, other):
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"""Less than or equal."""
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return self.__lt__(other) or self.__eq__(other)
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def __gt__(self, other):
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"""Greater than comparison - delegate to _data or handle scalars."""
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+
if isinstance(other, (int, float)):
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# If comparing to scalar, treat empty as 0
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if len(self._data) == 0:
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return 0 > other
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# If single numeric value in total field, use it
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if "total" in self._data and isinstance(self._data["total"], (int, float)):
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+
return self._data["total"] > other
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# Otherwise not comparable
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297
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return NotImplemented
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+
return NotImplemented
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299
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+
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300
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+
def __ge__(self, other):
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301
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+
"""Greater than or equal."""
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302
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+
return self.__gt__(other) or self.__eq__(other)
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+
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304
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+
def __bool__(self):
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+
"""Truth value testing. Empty DotDict is False, non-empty is True."""
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306
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+
return len(self._data) > 0
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+
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# Example Usage:
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|
if __name__ == "__main__":
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