scitex 2.0.0__py2.py3-none-any.whl → 2.1.0__py2.py3-none-any.whl

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Files changed (704) hide show
  1. scitex/__init__.py +53 -15
  2. scitex/__main__.py +72 -26
  3. scitex/__version__.py +1 -1
  4. scitex/_sh.py +145 -23
  5. scitex/ai/__init__.py +30 -16
  6. scitex/ai/_gen_ai/_Anthropic.py +5 -7
  7. scitex/ai/_gen_ai/_BaseGenAI.py +2 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +10 -2
  9. scitex/ai/_gen_ai/_Google.py +2 -2
  10. scitex/ai/_gen_ai/_Llama.py +2 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +2 -2
  12. scitex/ai/_gen_ai/_PARAMS.py +51 -65
  13. scitex/ai/_gen_ai/_Perplexity.py +2 -2
  14. scitex/ai/_gen_ai/__init__.py +25 -14
  15. scitex/ai/_gen_ai/_format_output_func.py +4 -4
  16. scitex/ai/classification/{classifier_server.py → Classifier.py} +5 -5
  17. scitex/ai/classification/CrossValidationExperiment.py +374 -0
  18. scitex/ai/classification/__init__.py +43 -4
  19. scitex/ai/classification/reporters/_BaseClassificationReporter.py +281 -0
  20. scitex/ai/classification/reporters/_ClassificationReporter.py +773 -0
  21. scitex/ai/classification/reporters/_MultiClassificationReporter.py +406 -0
  22. scitex/ai/classification/reporters/_SingleClassificationReporter.py +1834 -0
  23. scitex/ai/classification/reporters/__init__.py +11 -0
  24. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  25. scitex/ai/classification/reporters/reporter_utils/__init__.py +80 -0
  26. scitex/ai/classification/reporters/reporter_utils/aggregation.py +457 -0
  27. scitex/ai/classification/reporters/reporter_utils/data_models.py +313 -0
  28. scitex/ai/classification/reporters/reporter_utils/reporting.py +1056 -0
  29. scitex/ai/classification/reporters/reporter_utils/storage.py +221 -0
  30. scitex/ai/classification/reporters/reporter_utils/validation.py +395 -0
  31. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  32. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  33. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  35. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  36. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  37. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  38. scitex/ai/classification/timeseries/__init__.py +39 -0
  39. scitex/ai/classification/timeseries/_normalize_timestamp.py +436 -0
  40. scitex/ai/clustering/_umap.py +2 -2
  41. scitex/ai/feature_extraction/vit.py +1 -0
  42. scitex/ai/feature_selection/__init__.py +30 -0
  43. scitex/ai/feature_selection/feature_selection.py +364 -0
  44. scitex/ai/loss/multi_task_loss.py +1 -1
  45. scitex/ai/metrics/__init__.py +51 -4
  46. scitex/ai/metrics/_calc_bacc.py +61 -0
  47. scitex/ai/metrics/_calc_bacc_from_conf_mat.py +38 -0
  48. scitex/ai/metrics/_calc_clf_report.py +78 -0
  49. scitex/ai/metrics/_calc_conf_mat.py +93 -0
  50. scitex/ai/metrics/_calc_feature_importance.py +183 -0
  51. scitex/ai/metrics/_calc_mcc.py +61 -0
  52. scitex/ai/metrics/_calc_pre_rec_auc.py +116 -0
  53. scitex/ai/metrics/_calc_roc_auc.py +110 -0
  54. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +490 -0
  55. scitex/ai/metrics/{silhoute_score_block.py → _calc_silhouette_score.py} +15 -8
  56. scitex/ai/metrics/_normalize_labels.py +83 -0
  57. scitex/ai/plt/__init__.py +47 -8
  58. scitex/ai/plt/{_conf_mat.py → _plot_conf_mat.py} +158 -87
  59. scitex/ai/plt/_plot_feature_importance.py +323 -0
  60. scitex/ai/plt/_plot_learning_curve.py +345 -0
  61. scitex/ai/plt/_plot_optuna_study.py +225 -0
  62. scitex/ai/plt/_plot_pre_rec_curve.py +290 -0
  63. scitex/ai/plt/_plot_roc_curve.py +255 -0
  64. scitex/ai/training/{learning_curve_logger.py → _LearningCurveLogger.py} +197 -213
  65. scitex/ai/training/__init__.py +2 -2
  66. scitex/ai/utils/grid_search.py +3 -3
  67. scitex/benchmark/__init__.py +52 -0
  68. scitex/benchmark/benchmark.py +400 -0
  69. scitex/benchmark/monitor.py +370 -0
  70. scitex/benchmark/profiler.py +297 -0
  71. scitex/browser/__init__.py +48 -0
  72. scitex/browser/automation/CookieHandler.py +216 -0
  73. scitex/browser/automation/__init__.py +7 -0
  74. scitex/browser/collaboration/__init__.py +55 -0
  75. scitex/browser/collaboration/auth_helpers.py +94 -0
  76. scitex/browser/collaboration/collaborative_agent.py +136 -0
  77. scitex/browser/collaboration/credential_manager.py +188 -0
  78. scitex/browser/collaboration/interactive_panel.py +400 -0
  79. scitex/browser/collaboration/persistent_browser.py +170 -0
  80. scitex/browser/collaboration/shared_session.py +383 -0
  81. scitex/browser/collaboration/standard_interactions.py +246 -0
  82. scitex/browser/collaboration/visual_feedback.py +181 -0
  83. scitex/browser/core/BrowserMixin.py +326 -0
  84. scitex/browser/core/ChromeProfileManager.py +446 -0
  85. scitex/browser/core/__init__.py +9 -0
  86. scitex/browser/debugging/__init__.py +18 -0
  87. scitex/browser/debugging/_browser_logger.py +657 -0
  88. scitex/browser/debugging/_highlight_element.py +143 -0
  89. scitex/browser/debugging/_show_grid.py +154 -0
  90. scitex/browser/interaction/__init__.py +24 -0
  91. scitex/browser/interaction/click_center.py +149 -0
  92. scitex/browser/interaction/click_with_fallbacks.py +206 -0
  93. scitex/browser/interaction/close_popups.py +498 -0
  94. scitex/browser/interaction/fill_with_fallbacks.py +209 -0
  95. scitex/browser/pdf/__init__.py +14 -0
  96. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +200 -0
  97. scitex/browser/pdf/detect_chrome_pdf_viewer.py +198 -0
  98. scitex/browser/remote/CaptchaHandler.py +434 -0
  99. scitex/browser/remote/ZenRowsAPIClient.py +347 -0
  100. scitex/browser/remote/ZenRowsBrowserManager.py +570 -0
  101. scitex/browser/remote/__init__.py +11 -0
  102. scitex/browser/stealth/HumanBehavior.py +344 -0
  103. scitex/browser/stealth/StealthManager.py +1008 -0
  104. scitex/browser/stealth/__init__.py +9 -0
  105. scitex/browser/template.py +122 -0
  106. scitex/capture/__init__.py +110 -0
  107. scitex/capture/__main__.py +25 -0
  108. scitex/capture/capture.py +848 -0
  109. scitex/capture/cli.py +233 -0
  110. scitex/capture/gif.py +344 -0
  111. scitex/capture/mcp_server.py +961 -0
  112. scitex/capture/session.py +70 -0
  113. scitex/capture/utils.py +705 -0
  114. scitex/cli/__init__.py +17 -0
  115. scitex/cli/cloud.py +447 -0
  116. scitex/cli/main.py +42 -0
  117. scitex/cli/scholar.py +280 -0
  118. scitex/context/_suppress_output.py +5 -3
  119. scitex/db/__init__.py +30 -3
  120. scitex/db/__main__.py +75 -0
  121. scitex/db/_check_health.py +381 -0
  122. scitex/db/_delete_duplicates.py +25 -386
  123. scitex/db/_inspect.py +335 -114
  124. scitex/db/_inspect_optimized.py +301 -0
  125. scitex/db/{_PostgreSQL.py → _postgresql/_PostgreSQL.py} +3 -3
  126. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BackupMixin.py +1 -1
  127. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BatchMixin.py +1 -1
  128. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BlobMixin.py +1 -1
  129. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ConnectionMixin.py +1 -1
  130. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_MaintenanceMixin.py +1 -1
  131. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_QueryMixin.py +1 -1
  132. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_SchemaMixin.py +1 -1
  133. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TransactionMixin.py +1 -1
  134. scitex/db/_postgresql/__init__.py +6 -0
  135. scitex/db/_sqlite3/_SQLite3.py +210 -0
  136. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +581 -0
  137. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +517 -0
  138. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_BatchMixin.py +1 -1
  139. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +281 -0
  140. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +548 -0
  141. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +583 -0
  142. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ConnectionMixin.py +29 -13
  143. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +583 -0
  144. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ImportExportMixin.py +1 -1
  145. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_IndexMixin.py +1 -1
  146. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_MaintenanceMixin.py +2 -1
  147. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_QueryMixin.py +37 -10
  148. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_RowMixin.py +46 -6
  149. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TableMixin.py +56 -10
  150. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TransactionMixin.py +1 -1
  151. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/__init__.py +14 -2
  152. scitex/db/_sqlite3/__init__.py +7 -0
  153. scitex/db/_sqlite3/_delete_duplicates.py +274 -0
  154. scitex/decorators/__init__.py +2 -0
  155. scitex/decorators/_cache_disk.py +13 -5
  156. scitex/decorators/_cache_disk_async.py +49 -0
  157. scitex/decorators/_deprecated.py +175 -10
  158. scitex/decorators/_timeout.py +1 -1
  159. scitex/dev/_analyze_code_flow.py +2 -2
  160. scitex/dict/_DotDict.py +73 -15
  161. scitex/dict/_DotDict_v01-not-handling-recursive-instantiations.py +442 -0
  162. scitex/dict/_DotDict_v02-not-serializing-Path-object.py +446 -0
  163. scitex/dict/__init__.py +2 -0
  164. scitex/dict/_flatten.py +27 -0
  165. scitex/dsp/_crop.py +2 -2
  166. scitex/dsp/_demo_sig.py +2 -2
  167. scitex/dsp/_detect_ripples.py +2 -2
  168. scitex/dsp/_hilbert.py +2 -2
  169. scitex/dsp/_listen.py +6 -6
  170. scitex/dsp/_modulation_index.py +2 -2
  171. scitex/dsp/_pac.py +1 -1
  172. scitex/dsp/_psd.py +2 -2
  173. scitex/dsp/_resample.py +2 -1
  174. scitex/dsp/_time.py +3 -2
  175. scitex/dsp/_wavelet.py +3 -2
  176. scitex/dsp/add_noise.py +2 -2
  177. scitex/dsp/example.py +1 -0
  178. scitex/dsp/filt.py +10 -9
  179. scitex/dsp/template.py +3 -2
  180. scitex/dsp/utils/_differential_bandpass_filters.py +1 -1
  181. scitex/dsp/utils/pac.py +2 -2
  182. scitex/dt/_normalize_timestamp.py +432 -0
  183. scitex/errors.py +572 -0
  184. scitex/gen/_DimHandler.py +2 -2
  185. scitex/gen/__init__.py +37 -7
  186. scitex/gen/_deprecated_close.py +80 -0
  187. scitex/gen/_deprecated_start.py +26 -0
  188. scitex/gen/_detect_environment.py +152 -0
  189. scitex/gen/_detect_notebook_path.py +169 -0
  190. scitex/gen/_embed.py +6 -2
  191. scitex/gen/_get_notebook_path.py +257 -0
  192. scitex/gen/_less.py +1 -1
  193. scitex/gen/_list_packages.py +2 -2
  194. scitex/gen/_norm.py +44 -9
  195. scitex/gen/_norm_cache.py +269 -0
  196. scitex/gen/_src.py +3 -5
  197. scitex/gen/_title_case.py +3 -3
  198. scitex/io/__init__.py +28 -6
  199. scitex/io/_glob.py +13 -7
  200. scitex/io/_load.py +108 -21
  201. scitex/io/_load_cache.py +303 -0
  202. scitex/io/_load_configs.py +40 -15
  203. scitex/io/{_H5Explorer.py → _load_modules/_H5Explorer.py} +80 -17
  204. scitex/io/_load_modules/_ZarrExplorer.py +114 -0
  205. scitex/io/_load_modules/_bibtex.py +207 -0
  206. scitex/io/_load_modules/_hdf5.py +53 -178
  207. scitex/io/_load_modules/_json.py +5 -3
  208. scitex/io/_load_modules/_pdf.py +871 -16
  209. scitex/io/_load_modules/_sqlite3.py +15 -0
  210. scitex/io/_load_modules/_txt.py +41 -12
  211. scitex/io/_load_modules/_yaml.py +4 -3
  212. scitex/io/_load_modules/_zarr.py +126 -0
  213. scitex/io/_save.py +429 -171
  214. scitex/io/_save_modules/__init__.py +6 -0
  215. scitex/io/_save_modules/_bibtex.py +194 -0
  216. scitex/io/_save_modules/_csv.py +8 -4
  217. scitex/io/_save_modules/_excel.py +174 -15
  218. scitex/io/_save_modules/_hdf5.py +251 -226
  219. scitex/io/_save_modules/_image.py +1 -3
  220. scitex/io/_save_modules/_json.py +49 -4
  221. scitex/io/_save_modules/_listed_dfs_as_csv.py +1 -3
  222. scitex/io/_save_modules/_listed_scalars_as_csv.py +1 -3
  223. scitex/io/_save_modules/_tex.py +277 -0
  224. scitex/io/_save_modules/_yaml.py +42 -3
  225. scitex/io/_save_modules/_zarr.py +160 -0
  226. scitex/io/utils/__init__.py +20 -0
  227. scitex/io/utils/h5_to_zarr.py +616 -0
  228. scitex/linalg/_geometric_median.py +6 -2
  229. scitex/{gen/_tee.py → logging/_Tee.py} +43 -84
  230. scitex/logging/__init__.py +122 -0
  231. scitex/logging/_config.py +158 -0
  232. scitex/logging/_context.py +103 -0
  233. scitex/logging/_formatters.py +128 -0
  234. scitex/logging/_handlers.py +64 -0
  235. scitex/logging/_levels.py +35 -0
  236. scitex/logging/_logger.py +163 -0
  237. scitex/logging/_print_capture.py +95 -0
  238. scitex/ml/__init__.py +69 -0
  239. scitex/{ai/genai/anthropic.py → ml/_gen_ai/_Anthropic.py} +13 -19
  240. scitex/{ai/genai/base_genai.py → ml/_gen_ai/_BaseGenAI.py} +5 -5
  241. scitex/{ai/genai/deepseek.py → ml/_gen_ai/_DeepSeek.py} +11 -16
  242. scitex/{ai/genai/google.py → ml/_gen_ai/_Google.py} +7 -15
  243. scitex/{ai/genai/groq.py → ml/_gen_ai/_Groq.py} +1 -8
  244. scitex/{ai/genai/llama.py → ml/_gen_ai/_Llama.py} +3 -16
  245. scitex/{ai/genai/openai.py → ml/_gen_ai/_OpenAI.py} +3 -3
  246. scitex/{ai/genai/params.py → ml/_gen_ai/_PARAMS.py} +51 -65
  247. scitex/{ai/genai/perplexity.py → ml/_gen_ai/_Perplexity.py} +3 -14
  248. scitex/ml/_gen_ai/__init__.py +43 -0
  249. scitex/{ai/genai/calc_cost.py → ml/_gen_ai/_calc_cost.py} +1 -1
  250. scitex/{ai/genai/format_output_func.py → ml/_gen_ai/_format_output_func.py} +4 -4
  251. scitex/{ai/genai/genai_factory.py → ml/_gen_ai/_genai_factory.py} +8 -8
  252. scitex/ml/activation/__init__.py +8 -0
  253. scitex/ml/activation/_define.py +11 -0
  254. scitex/{ai/classifier_server.py → ml/classification/Classifier.py} +5 -5
  255. scitex/ml/classification/CrossValidationExperiment.py +374 -0
  256. scitex/ml/classification/__init__.py +46 -0
  257. scitex/ml/classification/reporters/_BaseClassificationReporter.py +281 -0
  258. scitex/ml/classification/reporters/_ClassificationReporter.py +773 -0
  259. scitex/ml/classification/reporters/_MultiClassificationReporter.py +406 -0
  260. scitex/ml/classification/reporters/_SingleClassificationReporter.py +1834 -0
  261. scitex/ml/classification/reporters/__init__.py +11 -0
  262. scitex/ml/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  263. scitex/ml/classification/reporters/reporter_utils/__init__.py +80 -0
  264. scitex/ml/classification/reporters/reporter_utils/aggregation.py +457 -0
  265. scitex/ml/classification/reporters/reporter_utils/data_models.py +313 -0
  266. scitex/ml/classification/reporters/reporter_utils/reporting.py +1056 -0
  267. scitex/ml/classification/reporters/reporter_utils/storage.py +221 -0
  268. scitex/ml/classification/reporters/reporter_utils/validation.py +395 -0
  269. scitex/ml/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  270. scitex/ml/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  271. scitex/ml/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  272. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  273. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  274. scitex/ml/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  275. scitex/ml/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  276. scitex/ml/classification/timeseries/__init__.py +39 -0
  277. scitex/ml/classification/timeseries/_normalize_timestamp.py +436 -0
  278. scitex/ml/clustering/__init__.py +11 -0
  279. scitex/ml/clustering/_pca.py +115 -0
  280. scitex/ml/clustering/_umap.py +376 -0
  281. scitex/ml/feature_extraction/__init__.py +56 -0
  282. scitex/ml/feature_extraction/vit.py +149 -0
  283. scitex/ml/feature_selection/__init__.py +30 -0
  284. scitex/ml/feature_selection/feature_selection.py +364 -0
  285. scitex/ml/loss/_L1L2Losses.py +34 -0
  286. scitex/ml/loss/__init__.py +12 -0
  287. scitex/ml/loss/multi_task_loss.py +47 -0
  288. scitex/ml/metrics/__init__.py +56 -0
  289. scitex/ml/metrics/_calc_bacc.py +61 -0
  290. scitex/ml/metrics/_calc_bacc_from_conf_mat.py +38 -0
  291. scitex/ml/metrics/_calc_clf_report.py +78 -0
  292. scitex/ml/metrics/_calc_conf_mat.py +93 -0
  293. scitex/ml/metrics/_calc_feature_importance.py +183 -0
  294. scitex/ml/metrics/_calc_mcc.py +61 -0
  295. scitex/ml/metrics/_calc_pre_rec_auc.py +116 -0
  296. scitex/ml/metrics/_calc_roc_auc.py +110 -0
  297. scitex/ml/metrics/_calc_seizure_prediction_metrics.py +490 -0
  298. scitex/ml/metrics/_calc_silhouette_score.py +503 -0
  299. scitex/ml/metrics/_normalize_labels.py +83 -0
  300. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/__init__.py +0 -0
  301. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/__init__.py +3 -0
  302. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +207 -0
  303. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +238 -0
  304. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +215 -0
  305. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/rangerqh.py +184 -0
  306. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/setup.py +24 -0
  307. scitex/ml/optim/__init__.py +13 -0
  308. scitex/ml/optim/_get_set.py +31 -0
  309. scitex/ml/optim/_optimizers.py +71 -0
  310. scitex/ml/plt/__init__.py +60 -0
  311. scitex/ml/plt/_plot_conf_mat.py +663 -0
  312. scitex/ml/plt/_plot_feature_importance.py +323 -0
  313. scitex/ml/plt/_plot_learning_curve.py +345 -0
  314. scitex/ml/plt/_plot_optuna_study.py +225 -0
  315. scitex/ml/plt/_plot_pre_rec_curve.py +290 -0
  316. scitex/ml/plt/_plot_roc_curve.py +255 -0
  317. scitex/ml/sk/__init__.py +11 -0
  318. scitex/ml/sk/_clf.py +58 -0
  319. scitex/ml/sk/_to_sktime.py +100 -0
  320. scitex/ml/sklearn/__init__.py +26 -0
  321. scitex/ml/sklearn/clf.py +58 -0
  322. scitex/ml/sklearn/to_sktime.py +100 -0
  323. scitex/{ai/training/early_stopping.py → ml/training/_EarlyStopping.py} +1 -2
  324. scitex/{ai → ml/training}/_LearningCurveLogger.py +198 -242
  325. scitex/ml/training/__init__.py +7 -0
  326. scitex/ml/utils/__init__.py +22 -0
  327. scitex/ml/utils/_check_params.py +50 -0
  328. scitex/ml/utils/_default_dataset.py +46 -0
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  331. scitex/ml/utils/_merge_labels.py +22 -0
  332. scitex/ml/utils/_sliding_window_data_augmentation.py +11 -0
  333. scitex/ml/utils/_under_sample.py +51 -0
  334. scitex/ml/utils/_verify_n_gpus.py +16 -0
  335. scitex/ml/utils/grid_search.py +148 -0
  336. scitex/nn/_BNet.py +15 -9
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  338. scitex/nn/_ModulationIndex.py +2 -2
  339. scitex/nn/_PAC.py +1 -1
  340. scitex/nn/_Spectrogram.py +12 -3
  341. scitex/nn/__init__.py +9 -10
  342. scitex/path/__init__.py +18 -0
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  344. scitex/path/_find.py +9 -4
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  351. scitex/plt/_subplots/_AxisWrapper.py +7 -3
  352. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +47 -13
  353. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +160 -2
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  357. scitex/plt/_subplots/_FigWrapper.py +62 -6
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  360. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +81 -0
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  365. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +35 -18
  366. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +1 -3
  367. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +1 -3
  368. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +1 -3
  369. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +1 -3
  370. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +1 -3
  371. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +1 -3
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  373. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +1 -3
  374. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_conf_mat.py +1 -3
  375. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_ecdf.py +1 -3
  376. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_fillv.py +1 -3
  377. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_heatmap.py +1 -3
  378. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_image.py +1 -3
  379. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_joyplot.py +1 -3
  380. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +1 -3
  381. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_line.py +1 -3
  382. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_ci.py +1 -3
  383. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_std.py +1 -3
  384. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_median_iqr.py +1 -3
  385. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_raster.py +1 -3
  386. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_rectangle.py +1 -3
  387. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +35 -0
  388. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter_hist.py +1 -3
  389. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_shaded_line.py +1 -3
  390. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_violin.py +1 -3
  391. scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +6 -4
  392. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +1 -3
  393. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +1 -3
  394. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +1 -3
  395. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +1 -3
  396. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +1 -3
  397. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +1 -3
  398. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +1 -3
  399. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +1 -3
  400. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +1 -3
  401. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +1 -3
  402. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +1 -3
  403. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +1 -3
  404. scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +60 -0
  405. scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +1 -3
  406. scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +1 -3
  407. scitex/plt/_subplots/_export_as_csv_formatters/test_formatters.py +1 -3
  408. scitex/plt/_subplots/_export_as_csv_formatters.py +56 -59
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  411. scitex/plt/ax/_style/_rotate_labels_v01.py +248 -0
  412. scitex/plt/ax/_style/_set_meta.py +11 -4
  413. scitex/plt/ax/_style/_set_supxyt.py +3 -3
  414. scitex/plt/ax/_style/_set_xyt.py +3 -3
  415. scitex/plt/ax/_style/_share_axes.py +2 -2
  416. scitex/plt/color/__init__.py +4 -4
  417. scitex/plt/color/{_get_colors_from_cmap.py → _get_colors_from_conf_matap.py} +7 -7
  418. scitex/plt/utils/_configure_mpl.py +99 -86
  419. scitex/plt/utils/_histogram_utils.py +1 -3
  420. scitex/plt/utils/_is_valid_axis.py +1 -3
  421. scitex/plt/utils/_scitex_config.py +1 -0
  422. scitex/repro/__init__.py +75 -0
  423. scitex/{reproduce → repro}/_gen_ID.py +1 -1
  424. scitex/{reproduce → repro}/_gen_timestamp.py +1 -1
  425. scitex/repro_rng/_RandomStateManager.py +590 -0
  426. scitex/repro_rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  427. scitex/repro_rng/__init__.py +39 -0
  428. scitex/reproduce/__init__.py +25 -13
  429. scitex/reproduce/_hash_array.py +22 -0
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  431. scitex/resource/_get_specs.py +2 -2
  432. scitex/resource/_log_processor_usages.py +2 -2
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  434. scitex/rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  435. scitex/rng/__init__.py +39 -0
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  437. scitex/scholar/__main__.py +319 -0
  438. scitex/scholar/auth/ScholarAuthManager.py +308 -0
  439. scitex/scholar/auth/__init__.py +12 -0
  440. scitex/scholar/auth/core/AuthenticationGateway.py +473 -0
  441. scitex/scholar/auth/core/BrowserAuthenticator.py +386 -0
  442. scitex/scholar/auth/core/StrategyResolver.py +309 -0
  443. scitex/scholar/auth/core/__init__.py +16 -0
  444. scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +120 -0
  445. scitex/scholar/auth/gateway/_OpenURLResolver.py +209 -0
  446. scitex/scholar/auth/gateway/__init__.py +38 -0
  447. scitex/scholar/auth/gateway/_resolve_functions.py +101 -0
  448. scitex/scholar/auth/providers/BaseAuthenticator.py +166 -0
  449. scitex/scholar/auth/providers/EZProxyAuthenticator.py +484 -0
  450. scitex/scholar/auth/providers/OpenAthensAuthenticator.py +619 -0
  451. scitex/scholar/auth/providers/ShibbolethAuthenticator.py +686 -0
  452. scitex/scholar/auth/providers/__init__.py +18 -0
  453. scitex/scholar/auth/session/AuthCacheManager.py +189 -0
  454. scitex/scholar/auth/session/SessionManager.py +159 -0
  455. scitex/scholar/auth/session/__init__.py +11 -0
  456. scitex/scholar/auth/sso/BaseSSOAutomator.py +373 -0
  457. scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +378 -0
  458. scitex/scholar/auth/sso/SSOAutomator.py +180 -0
  459. scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +380 -0
  460. scitex/scholar/auth/sso/__init__.py +15 -0
  461. scitex/scholar/browser/ScholarBrowserManager.py +705 -0
  462. scitex/scholar/browser/__init__.py +38 -0
  463. scitex/scholar/browser/utils/__init__.py +13 -0
  464. scitex/scholar/browser/utils/click_and_wait.py +205 -0
  465. scitex/scholar/browser/utils/close_unwanted_pages.py +140 -0
  466. scitex/scholar/browser/utils/wait_redirects.py +732 -0
  467. scitex/scholar/config/PublisherRules.py +132 -0
  468. scitex/scholar/config/ScholarConfig.py +126 -0
  469. scitex/scholar/config/__init__.py +17 -0
  470. scitex/scholar/core/Paper.py +627 -0
  471. scitex/scholar/core/Papers.py +722 -0
  472. scitex/scholar/core/Scholar.py +1975 -0
  473. scitex/scholar/core/__init__.py +9 -0
  474. scitex/scholar/impact_factor/ImpactFactorEngine.py +204 -0
  475. scitex/scholar/impact_factor/__init__.py +20 -0
  476. scitex/scholar/impact_factor/estimation/ImpactFactorEstimationEngine.py +0 -0
  477. scitex/scholar/impact_factor/estimation/__init__.py +40 -0
  478. scitex/scholar/impact_factor/estimation/build_database.py +0 -0
  479. scitex/scholar/impact_factor/estimation/core/__init__.py +28 -0
  480. scitex/scholar/impact_factor/estimation/core/cache_manager.py +523 -0
  481. scitex/scholar/impact_factor/estimation/core/calculator.py +355 -0
  482. scitex/scholar/impact_factor/estimation/core/journal_matcher.py +428 -0
  483. scitex/scholar/integration/__init__.py +59 -0
  484. scitex/scholar/integration/base.py +502 -0
  485. scitex/scholar/integration/mendeley/__init__.py +22 -0
  486. scitex/scholar/integration/mendeley/exporter.py +166 -0
  487. scitex/scholar/integration/mendeley/importer.py +236 -0
  488. scitex/scholar/integration/mendeley/linker.py +79 -0
  489. scitex/scholar/integration/mendeley/mapper.py +212 -0
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  493. scitex/scholar/integration/zotero/importer.py +372 -0
  494. scitex/scholar/integration/zotero/linker.py +415 -0
  495. scitex/scholar/integration/zotero/mapper.py +286 -0
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  498. scitex/scholar/metadata_engines/individual/ArXivEngine.py +397 -0
  499. scitex/scholar/metadata_engines/individual/CrossRefEngine.py +274 -0
  500. scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +263 -0
  501. scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +350 -0
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  503. scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +438 -0
  504. scitex/scholar/metadata_engines/individual/URLDOIEngine.py +410 -0
  505. scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +487 -0
  506. scitex/scholar/metadata_engines/individual/__init__.py +7 -0
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  510. scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +103 -0
  511. scitex/scholar/metadata_engines/utils/_standardize_metadata.py +376 -0
  512. scitex/scholar/pdf_download/ScholarPDFDownloader.py +579 -0
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  522. scitex/scholar/pipelines/ScholarPipelineSingle.py +767 -0
  523. scitex/scholar/pipelines/__init__.py +49 -0
  524. scitex/scholar/storage/BibTeXHandler.py +1018 -0
  525. scitex/scholar/storage/PaperIO.py +468 -0
  526. scitex/scholar/storage/ScholarLibrary.py +182 -0
  527. scitex/scholar/storage/_DeduplicationManager.py +548 -0
  528. scitex/scholar/storage/_LibraryCacheManager.py +724 -0
  529. scitex/scholar/storage/_LibraryManager.py +1835 -0
  530. scitex/scholar/storage/__init__.py +28 -0
  531. scitex/scholar/url_finder/ScholarURLFinder.py +379 -0
  532. scitex/scholar/url_finder/__init__.py +7 -0
  533. scitex/scholar/url_finder/strategies/__init__.py +33 -0
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  535. scitex/scholar/url_finder/strategies/find_pdf_urls_by_dropdown.py +67 -0
  536. scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +204 -0
  537. scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +256 -0
  538. scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +165 -0
  539. scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +163 -0
  540. scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +70 -0
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  543. scitex/scholar/utils/bibtex/_parse_bibtex.py +71 -0
  544. scitex/scholar/utils/cleanup/__init__.py +8 -0
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  546. scitex/scholar/utils/cleanup/cleanup_old_extractions.py +117 -0
  547. scitex/scholar/utils/text/_TextNormalizer.py +407 -0
  548. scitex/scholar/utils/text/__init__.py +9 -0
  549. scitex/scholar/zotero/__init__.py +38 -0
  550. scitex/session/__init__.py +51 -0
  551. scitex/session/_lifecycle.py +736 -0
  552. scitex/session/_manager.py +102 -0
  553. scitex/session/template.py +122 -0
  554. scitex/stats/__init__.py +30 -26
  555. scitex/stats/correct/__init__.py +21 -0
  556. scitex/stats/correct/_correct_bonferroni.py +551 -0
  557. scitex/stats/correct/_correct_fdr.py +634 -0
  558. scitex/stats/correct/_correct_holm.py +548 -0
  559. scitex/stats/correct/_correct_sidak.py +499 -0
  560. scitex/stats/descriptive/__init__.py +85 -0
  561. scitex/stats/descriptive/_circular.py +540 -0
  562. scitex/stats/descriptive/_describe.py +219 -0
  563. scitex/stats/descriptive/_nan.py +518 -0
  564. scitex/stats/descriptive/_real.py +189 -0
  565. scitex/stats/effect_sizes/__init__.py +41 -0
  566. scitex/stats/effect_sizes/_cliffs_delta.py +325 -0
  567. scitex/stats/effect_sizes/_cohens_d.py +342 -0
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  569. scitex/stats/effect_sizes/_eta_squared.py +302 -0
  570. scitex/stats/effect_sizes/_prob_superiority.py +296 -0
  571. scitex/stats/posthoc/__init__.py +19 -0
  572. scitex/stats/posthoc/_dunnett.py +463 -0
  573. scitex/stats/posthoc/_games_howell.py +383 -0
  574. scitex/stats/posthoc/_tukey_hsd.py +367 -0
  575. scitex/stats/power/__init__.py +19 -0
  576. scitex/stats/power/_power.py +433 -0
  577. scitex/stats/template.py +119 -0
  578. scitex/stats/utils/__init__.py +62 -0
  579. scitex/stats/utils/_effect_size.py +985 -0
  580. scitex/stats/utils/_formatters.py +270 -0
  581. scitex/stats/utils/_normalizers.py +927 -0
  582. scitex/stats/utils/_power.py +433 -0
  583. scitex/stats_v01/_EffectSizeCalculator.py +488 -0
  584. scitex/stats_v01/_StatisticalValidator.py +411 -0
  585. scitex/stats_v01/__init__.py +60 -0
  586. scitex/stats_v01/_additional_tests.py +415 -0
  587. scitex/{stats → stats_v01}/_p2stars.py +19 -5
  588. scitex/stats_v01/_two_sample_tests.py +141 -0
  589. scitex/stats_v01/desc/__init__.py +83 -0
  590. scitex/stats_v01/desc/_circular.py +540 -0
  591. scitex/stats_v01/desc/_describe.py +219 -0
  592. scitex/stats_v01/desc/_nan.py +518 -0
  593. scitex/{stats/desc/_nan.py → stats_v01/desc/_nan_v01-20250920_145731.py} +23 -12
  594. scitex/stats_v01/desc/_real.py +189 -0
  595. scitex/stats_v01/tests/__corr_test_optimized.py +221 -0
  596. scitex/stats_v01/tests/_corr_test_optimized.py +179 -0
  597. scitex/str/__init__.py +1 -3
  598. scitex/str/_clean_path.py +6 -2
  599. scitex/str/_latex_fallback.py +267 -160
  600. scitex/str/_parse.py +44 -36
  601. scitex/str/_printc.py +1 -3
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  605. scitex/template/create_research.py +80 -0
  606. scitex/template/create_singularity.py +80 -0
  607. scitex/units.py +291 -0
  608. scitex/utils/_compress_hdf5.py +14 -3
  609. scitex/utils/_email.py +21 -2
  610. scitex/utils/_grid.py +6 -4
  611. scitex/utils/_notify.py +13 -10
  612. scitex/utils/_verify_scitex_format.py +589 -0
  613. scitex/utils/_verify_scitex_format_v01.py +370 -0
  614. scitex/utils/template.py +122 -0
  615. scitex/web/_search_pubmed.py +62 -16
  616. scitex-2.1.0.dist-info/LICENSE +21 -0
  617. scitex-2.1.0.dist-info/METADATA +677 -0
  618. scitex-2.1.0.dist-info/RECORD +919 -0
  619. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/WHEEL +1 -1
  620. scitex-2.1.0.dist-info/entry_points.txt +3 -0
  621. scitex/ai/__Classifiers.py +0 -101
  622. scitex/ai/classification/classification_reporter.py +0 -1137
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  624. scitex/ai/classification_reporter.py +0 -1161
  625. scitex/ai/genai/__init__.py +0 -277
  626. scitex/ai/genai/anthropic_provider.py +0 -320
  627. scitex/ai/genai/anthropic_refactored.py +0 -109
  628. scitex/ai/genai/auth_manager.py +0 -200
  629. scitex/ai/genai/base_provider.py +0 -291
  630. scitex/ai/genai/chat_history.py +0 -307
  631. scitex/ai/genai/cost_tracker.py +0 -276
  632. scitex/ai/genai/deepseek_provider.py +0 -251
  633. scitex/ai/genai/google_provider.py +0 -228
  634. scitex/ai/genai/groq_provider.py +0 -248
  635. scitex/ai/genai/image_processor.py +0 -250
  636. scitex/ai/genai/llama_provider.py +0 -214
  637. scitex/ai/genai/mock_provider.py +0 -127
  638. scitex/ai/genai/model_registry.py +0 -304
  639. scitex/ai/genai/openai_provider.py +0 -293
  640. scitex/ai/genai/perplexity_provider.py +0 -205
  641. scitex/ai/genai/provider_base.py +0 -302
  642. scitex/ai/genai/provider_factory.py +0 -370
  643. scitex/ai/genai/response_handler.py +0 -235
  644. scitex/ai/layer/_Pass.py +0 -21
  645. scitex/ai/layer/__init__.py +0 -10
  646. scitex/ai/layer/_switch.py +0 -8
  647. scitex/ai/metrics/_bACC.py +0 -51
  648. scitex/ai/plt/_learning_curve.py +0 -194
  649. scitex/ai/plt/_optuna_study.py +0 -111
  650. scitex/ai/plt/aucs/__init__.py +0 -2
  651. scitex/ai/plt/aucs/example.py +0 -60
  652. scitex/ai/plt/aucs/pre_rec_auc.py +0 -223
  653. scitex/ai/plt/aucs/roc_auc.py +0 -246
  654. scitex/ai/sampling/undersample.py +0 -29
  655. scitex/db/_SQLite3.py +0 -2136
  656. scitex/db/_SQLite3Mixins/_BlobMixin.py +0 -229
  657. scitex/gen/_close.py +0 -222
  658. scitex/gen/_start.py +0 -451
  659. scitex/general/__init__.py +0 -5
  660. scitex/io/_load_modules/_db.py +0 -24
  661. scitex/life/__init__.py +0 -10
  662. scitex/life/_monitor_rain.py +0 -49
  663. scitex/reproduce/_fix_seeds.py +0 -45
  664. scitex/res/__init__.py +0 -5
  665. scitex/scholar/_local_search.py +0 -454
  666. scitex/scholar/_paper.py +0 -244
  667. scitex/scholar/_pdf_downloader.py +0 -325
  668. scitex/scholar/_search.py +0 -393
  669. scitex/scholar/_vector_search.py +0 -370
  670. scitex/scholar/_web_sources.py +0 -457
  671. scitex/stats/desc/__init__.py +0 -40
  672. scitex-2.0.0.dist-info/METADATA +0 -307
  673. scitex-2.0.0.dist-info/RECORD +0 -572
  674. scitex-2.0.0.dist-info/licenses/LICENSE +0 -7
  675. /scitex/ai/{act → activation}/__init__.py +0 -0
  676. /scitex/ai/{act → activation}/_define.py +0 -0
  677. /scitex/ai/{early_stopping.py → training/_EarlyStopping.py} +0 -0
  678. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ImportExportMixin.py +0 -0
  679. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_IndexMixin.py +0 -0
  680. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_RowMixin.py +0 -0
  681. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TableMixin.py +0 -0
  682. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/__init__.py +0 -0
  683. /scitex/{stats → stats_v01}/_calc_partial_corr.py +0 -0
  684. /scitex/{stats → stats_v01}/_corr_test_multi.py +0 -0
  685. /scitex/{stats → stats_v01}/_corr_test_wrapper.py +0 -0
  686. /scitex/{stats → stats_v01}/_describe_wrapper.py +0 -0
  687. /scitex/{stats → stats_v01}/_multiple_corrections.py +0 -0
  688. /scitex/{stats → stats_v01}/_nan_stats.py +0 -0
  689. /scitex/{stats → stats_v01}/_p2stars_wrapper.py +0 -0
  690. /scitex/{stats → stats_v01}/_statistical_tests.py +0 -0
  691. /scitex/{stats/desc/_describe.py → stats_v01/desc/_describe_v01-20250920_145731.py} +0 -0
  692. /scitex/{stats/desc/_real.py → stats_v01/desc/_real_v01-20250920_145731.py} +0 -0
  693. /scitex/{stats → stats_v01}/multiple/__init__.py +0 -0
  694. /scitex/{stats → stats_v01}/multiple/_bonferroni_correction.py +0 -0
  695. /scitex/{stats → stats_v01}/multiple/_fdr_correction.py +0 -0
  696. /scitex/{stats → stats_v01}/multiple/_multicompair.py +0 -0
  697. /scitex/{stats → stats_v01}/tests/__corr_test.py +0 -0
  698. /scitex/{stats → stats_v01}/tests/__corr_test_multi.py +0 -0
  699. /scitex/{stats → stats_v01}/tests/__corr_test_single.py +0 -0
  700. /scitex/{stats → stats_v01}/tests/__init__.py +0 -0
  701. /scitex/{stats → stats_v01}/tests/_brunner_munzel_test.py +0 -0
  702. /scitex/{stats → stats_v01}/tests/_nocorrelation_test.py +0 -0
  703. /scitex/{stats → stats_v01}/tests/_smirnov_grubbs.py +0 -0
  704. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,498 @@
1
+ #!/usr/bin/env python3
2
+ # -*- coding: utf-8 -*-
3
+ # Timestamp: "2025-10-08 04:22:00 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex_repo/src/scitex/browser/interaction/handle_popups.py
5
+ # ----------------------------------------
6
+ from __future__ import annotations
7
+ import os
8
+ __FILE__ = __file__
9
+ __DIR__ = os.path.dirname(__FILE__)
10
+ # ----------------------------------------
11
+
12
+ """
13
+ Universal popup handler for browser automation.
14
+
15
+ Detects and closes various types of popups including:
16
+ - Cookie consent banners
17
+ - Newsletter/subscription modals
18
+ - AI assistant promotions
19
+ - Authentication prompts
20
+ - General modal dialogs
21
+
22
+ This is a universal utility that works across any website.
23
+ """
24
+
25
+ import asyncio
26
+ from typing import Dict, List, Optional, Tuple
27
+ from playwright.async_api import Page, ElementHandle
28
+
29
+ from scitex import logging
30
+
31
+ logger = logging.getLogger(__name__)
32
+
33
+
34
+ class PopupHandler:
35
+ """Handle various types of popups on web pages."""
36
+
37
+ # Common selectors for different popup types
38
+ COOKIE_SELECTORS = [
39
+ 'button#onetrust-accept-btn-handler',
40
+ 'button#onetrust-pc-btn-handler',
41
+ 'button[id*="accept-cookie"]',
42
+ 'button[id*="accept-all"]',
43
+ 'button[aria-label*="accept cookie"]',
44
+ 'button[aria-label*="Accept cookie"]',
45
+ 'button:has-text("Accept all")',
46
+ 'button:has-text("Accept All")',
47
+ 'button:has-text("I agree")',
48
+ 'button:has-text("I Agree")',
49
+ 'button:has-text("Accept")',
50
+ '.cookie-notice button.accept',
51
+ '[class*="cookie"] button[class*="accept"]',
52
+ ]
53
+
54
+ CLOSE_SELECTORS = [
55
+ 'button[aria-label="Close"]',
56
+ 'button[aria-label="close"]',
57
+ 'button[aria-label*="Close"]',
58
+ 'button[aria-label*="close"]',
59
+ 'button[aria-label*="dismiss"]',
60
+ 'button[aria-label*="Dismiss"]',
61
+ 'button.close',
62
+ 'button.close-button',
63
+ 'button.modal-close',
64
+ 'button.popup-close',
65
+ 'button.dialog-close',
66
+ 'a.close',
67
+ 'a.close-button',
68
+ 'span.close',
69
+ '[class*="close-button"]',
70
+ '[class*="close-icon"]',
71
+ 'svg[class*="close"]',
72
+ 'button:has-text("No thanks")',
73
+ 'button:has-text("No Thanks")',
74
+ 'button:has-text("Maybe later")',
75
+ 'button:has-text("Maybe Later")',
76
+ 'button:has-text("Skip")',
77
+ 'button:has-text("Dismiss")',
78
+ 'button:has-text("Not now")',
79
+ 'button:has-text("Not Now")',
80
+ ]
81
+
82
+ MODAL_SELECTORS = [
83
+ '.modal',
84
+ '.overlay',
85
+ '[role="dialog"]',
86
+ '.popup',
87
+ '#onetrust-banner-sdk',
88
+ '.onetrust-pc-dark-filter',
89
+ '[class*="modal"]',
90
+ '[class*="popup"]',
91
+ '[class*="overlay"]',
92
+ '[class*="dialog"]',
93
+ '[class*="banner"]',
94
+ 'div[aria-modal="true"]',
95
+ ]
96
+
97
+ def __init__(self, page: Page):
98
+ """Initialize popup handler with a page."""
99
+ self.page = page
100
+ self.handled_popups = []
101
+
102
+ async def detect_popups(self) -> List[Dict]:
103
+ """
104
+ Detect all visible popups on the page.
105
+
106
+ Returns:
107
+ List of detected popups with their details
108
+ """
109
+ detected = []
110
+
111
+ try:
112
+ # Check for visible modal/popup elements
113
+ popup_info = await self.page.evaluate('''
114
+ () => {
115
+ const modalSelectors = %s;
116
+ const found = [];
117
+
118
+ for (const selector of modalSelectors) {
119
+ try {
120
+ const elements = document.querySelectorAll(selector);
121
+ for (const el of elements) {
122
+ const style = window.getComputedStyle(el);
123
+ const rect = el.getBoundingClientRect();
124
+
125
+ // Check if element is visible
126
+ if (style.display !== 'none' &&
127
+ style.visibility !== 'hidden' &&
128
+ rect.width > 0 &&
129
+ rect.height > 0 &&
130
+ style.opacity !== '0') {
131
+
132
+ // Get text preview
133
+ let text = el.innerText || el.textContent || '';
134
+ text = text.substring(0, 200).trim();
135
+
136
+ // Try to identify popup type
137
+ let type = 'unknown';
138
+ const lowerText = text.toLowerCase();
139
+ if (lowerText.includes('cookie') || lowerText.includes('privacy')) {
140
+ type = 'cookie';
141
+ } else if (lowerText.includes('subscribe') || lowerText.includes('newsletter')) {
142
+ type = 'newsletter';
143
+ } else if (lowerText.includes('sign in') || lowerText.includes('login')) {
144
+ type = 'auth';
145
+ } else if (lowerText.includes('ai') || lowerText.includes('assistant')) {
146
+ type = 'ai_promotion';
147
+ }
148
+
149
+ found.push({
150
+ selector: selector,
151
+ type: type,
152
+ text: text,
153
+ zIndex: style.zIndex || '0',
154
+ position: {
155
+ top: rect.top,
156
+ left: rect.left,
157
+ width: rect.width,
158
+ height: rect.height
159
+ }
160
+ });
161
+ }
162
+ }
163
+ } catch (e) {
164
+ // Ignore selector errors
165
+ }
166
+ }
167
+
168
+ // Sort by z-index (highest first)
169
+ found.sort((a, b) => {
170
+ const zA = parseInt(a.zIndex) || 0;
171
+ const zB = parseInt(b.zIndex) || 0;
172
+ return zB - zA;
173
+ });
174
+
175
+ return found;
176
+ }
177
+ ''' % str(self.MODAL_SELECTORS))
178
+
179
+ detected = popup_info
180
+
181
+ if detected:
182
+ logger.debug(f"Detected {len(detected)} popup(s)")
183
+ for popup in detected[:3]: # Log first 3
184
+ logger.debug(f" - Type: {popup['type']}, Text preview: {popup['text'][:50]}...")
185
+
186
+ except Exception as e:
187
+ logger.debug(f"Error detecting popups: {e}")
188
+
189
+ return detected
190
+
191
+ async def handle_cookie_popup(self) -> bool:
192
+ """
193
+ Handle cookie consent popups.
194
+
195
+ Returns:
196
+ True if handled, False otherwise
197
+ """
198
+ for selector in self.COOKIE_SELECTORS:
199
+ try:
200
+ button = await self.page.query_selector(selector)
201
+ if button and await button.is_visible():
202
+ # IMPORTANT: Skip SciTeX manual control buttons
203
+ is_scitex_control = await button.get_attribute('data-scitex-no-auto-click')
204
+ if is_scitex_control:
205
+ logger.debug(f"Skipping SciTeX control button: {selector}")
206
+ continue
207
+
208
+ await button.click()
209
+ logger.success(f"Accepted cookies with selector: {selector}")
210
+ await self.page.wait_for_timeout(1000)
211
+ self.handled_popups.append(('cookie', selector))
212
+ return True
213
+ except Exception as e:
214
+ logger.debug(f"Cookie selector {selector} failed: {e}")
215
+ continue
216
+
217
+ return False
218
+
219
+ async def close_popup(self, popup_info: Optional[Dict] = None) -> bool:
220
+ """
221
+ Close a popup using various strategies.
222
+
223
+ Args:
224
+ popup_info: Optional popup information from detect_popups
225
+
226
+ Returns:
227
+ True if closed, False otherwise
228
+ """
229
+ # Try close buttons
230
+ for selector in self.CLOSE_SELECTORS:
231
+ try:
232
+ button = await self.page.query_selector(selector)
233
+ if button and await button.is_visible():
234
+ # IMPORTANT: Skip SciTeX manual control buttons
235
+ is_scitex_control = await button.get_attribute('data-scitex-no-auto-click')
236
+ if is_scitex_control:
237
+ logger.debug(f"Skipping SciTeX control button: {selector}")
238
+ continue
239
+
240
+ await button.click()
241
+ logger.success(f"Closed popup with selector: {selector}")
242
+ await self.page.wait_for_timeout(500)
243
+ self.handled_popups.append(('close', selector))
244
+ return True
245
+ except Exception:
246
+ continue
247
+
248
+ # Try ESC key as fallback
249
+ try:
250
+ await self.page.keyboard.press('Escape')
251
+ await self.page.wait_for_timeout(500)
252
+
253
+ # Check if popup is gone
254
+ if popup_info:
255
+ still_visible = await self.page.evaluate(
256
+ f'!!document.querySelector("{popup_info["selector"]}")'
257
+ )
258
+ if not still_visible:
259
+ logger.success("Closed popup with ESC key")
260
+ self.handled_popups.append(('escape', popup_info['selector']))
261
+ return True
262
+ except Exception as e:
263
+ logger.debug(f"ESC key failed: {e}")
264
+
265
+ return False
266
+
267
+ async def handle_all_popups(self, max_attempts: int = 3, delay_ms: int = 1000) -> int:
268
+ """
269
+ Detect and handle all popups on the page.
270
+
271
+ Args:
272
+ max_attempts: Maximum number of attempts to clear popups
273
+ delay_ms: Delay between attempts in milliseconds
274
+
275
+ Returns:
276
+ Number of popups handled
277
+ """
278
+ total_handled = 0
279
+
280
+ for attempt in range(max_attempts):
281
+ # Detect popups
282
+ popups = await self.detect_popups()
283
+
284
+ if not popups:
285
+ if attempt == 0:
286
+ logger.debug("No popups detected")
287
+ break
288
+
289
+ logger.debug(f"Attempt {attempt + 1}: Found {len(popups)} popup(s)")
290
+
291
+ # Handle each popup
292
+ for popup in popups:
293
+ handled = False
294
+
295
+ # Try cookie handling first if it's a cookie popup
296
+ if popup['type'] == 'cookie':
297
+ handled = await self.handle_cookie_popup()
298
+
299
+ # Otherwise try to close it
300
+ if not handled:
301
+ handled = await self.close_popup(popup)
302
+
303
+ if handled:
304
+ total_handled += 1
305
+ await self.page.wait_for_timeout(delay_ms)
306
+ else:
307
+ logger.warning(f"Could not handle popup: {popup['type']}")
308
+
309
+ # Small delay before next detection
310
+ await self.page.wait_for_timeout(500)
311
+
312
+ if total_handled > 0:
313
+ logger.success(f"Successfully handled {total_handled} popup(s)")
314
+
315
+ return total_handled
316
+
317
+ async def wait_and_handle_popups(self, timeout_ms: int = 5000) -> int:
318
+ """
319
+ Wait for popups to appear and handle them.
320
+
321
+ Args:
322
+ timeout_ms: Maximum time to wait for popups
323
+
324
+ Returns:
325
+ Number of popups handled
326
+ """
327
+ start_time = asyncio.get_event_loop().time()
328
+ total_handled = 0
329
+
330
+ while (asyncio.get_event_loop().time() - start_time) * 1000 < timeout_ms:
331
+ popups = await self.detect_popups()
332
+
333
+ if popups:
334
+ for popup in popups:
335
+ if popup['type'] == 'cookie':
336
+ if await self.handle_cookie_popup():
337
+ total_handled += 1
338
+ elif await self.close_popup(popup):
339
+ total_handled += 1
340
+
341
+ if total_handled > 0:
342
+ break
343
+
344
+ await self.page.wait_for_timeout(500)
345
+
346
+ return total_handled
347
+
348
+
349
+ async def close_popups_async(
350
+ page: Page,
351
+ handle_cookies: bool = True,
352
+ close_others: bool = True,
353
+ max_attempts: int = 3,
354
+ wait_first: bool = True,
355
+ wait_ms: int = 2000
356
+ ) -> Tuple[int, List]:
357
+ """
358
+ Convenience function to handle all popups on a page.
359
+
360
+ Args:
361
+ page: Playwright page object
362
+ handle_cookies: Whether to accept cookie popups
363
+ close_others: Whether to close other popups
364
+ max_attempts: Maximum attempts to clear popups
365
+ wait_first: Whether to wait for popups to appear first
366
+ wait_ms: Time to wait for popups to appear
367
+
368
+ Returns:
369
+ Tuple of (number handled, list of handled popups)
370
+ """
371
+ handler = PopupHandler(page)
372
+
373
+ # Wait for popups to appear if requested
374
+ if wait_first:
375
+ await page.wait_for_timeout(wait_ms)
376
+
377
+ # Handle all popups
378
+ total = await handler.handle_all_popups(max_attempts=max_attempts)
379
+
380
+ return total, handler.handled_popups
381
+
382
+
383
+ async def ensure_no_popups_async(page: Page, check_interval_ms: int = 1000) -> bool:
384
+ """
385
+ Ensure no popups are blocking the page.
386
+
387
+ Args:
388
+ page: Playwright page object
389
+ check_interval_ms: Interval to check for popups
390
+
391
+ Returns:
392
+ True if page is clear of popups
393
+ """
394
+ handler = PopupHandler(page)
395
+
396
+ # Check multiple times
397
+ for _ in range(3):
398
+ popups = await handler.detect_popups()
399
+ if popups:
400
+ await handler.handle_all_popups(max_attempts=1)
401
+ await page.wait_for_timeout(check_interval_ms)
402
+ else:
403
+ return True
404
+
405
+ # Final check
406
+ final_popups = await handler.detect_popups()
407
+ return len(final_popups) == 0
408
+
409
+
410
+ def main(args):
411
+ """Demonstrate PopupHandler functionality."""
412
+ import asyncio
413
+ from playwright.async_api import async_playwright
414
+
415
+ async def demo():
416
+ async with async_playwright() as p:
417
+ browser = await p.chromium.launch(headless=False)
418
+ page = await browser.new_page()
419
+
420
+ logger.debug("PopupHandler: Starting demo")
421
+
422
+ # Navigate to a page with popups
423
+ await page.goto("https://www.springer.com", timeout=30000)
424
+ await asyncio.sleep(2)
425
+
426
+ # Demonstrate popup handling
427
+ handler = PopupHandler(page)
428
+
429
+ logger.debug("Detecting popups...")
430
+ popups = await handler.detect_popups()
431
+ logger.debug(f"Found {len(popups)} popup(s)")
432
+
433
+ logger.debug("Handling popups...")
434
+ handled = await handler.handle_all_popups()
435
+ logger.success(f"Successfully handled {handled} popup(s)")
436
+
437
+ # Verify page is clear
438
+ is_clear = await ensure_no_popups_async(page)
439
+ if is_clear:
440
+ logger.success("Page is clear of popups")
441
+ else:
442
+ logger.warning("Some popups may still be present")
443
+
444
+ logger.success("PopupHandler demonstration complete")
445
+
446
+ await asyncio.sleep(2)
447
+ await browser.close()
448
+
449
+ asyncio.run(demo())
450
+ return 0
451
+
452
+
453
+ def parse_args():
454
+ """Parse command line arguments."""
455
+ import argparse
456
+ parser = argparse.ArgumentParser(description="Popup handler demo")
457
+ return parser.parse_args()
458
+
459
+
460
+ def run_main() -> None:
461
+ """Initialize scitex framework, run main function, and cleanup."""
462
+ global CONFIG, CC, sys, plt, rng
463
+
464
+ import sys
465
+
466
+ import matplotlib.pyplot as plt
467
+
468
+ import scitex as stx
469
+
470
+ args = parse_args()
471
+
472
+ CONFIG, sys.stdout, sys.stderr, plt, CC, rng = stx.session.start(
473
+ sys,
474
+ plt,
475
+ args=args,
476
+ file=__FILE__,
477
+ sdir_suffix=None,
478
+ verbose=False,
479
+ agg=True,
480
+ )
481
+
482
+ exit_status = main(args)
483
+
484
+ stx.session.close(
485
+ CONFIG,
486
+ verbose=False,
487
+ notify=False,
488
+ message="",
489
+ exit_status=exit_status,
490
+ )
491
+
492
+
493
+ if __name__ == "__main__":
494
+ run_main()
495
+
496
+ # python -m scitex.browser.interaction.close_popups
497
+
498
+ # EOF
@@ -0,0 +1,209 @@
1
+ #!/usr/bin/env python3
2
+ # -*- coding: utf-8 -*-
3
+ # Timestamp: "2025-10-08 04:13:32 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex_repo/src/scitex/browser/interaction/fill_with_fallbacks.py
5
+ # ----------------------------------------
6
+ from __future__ import annotations
7
+ import os
8
+ __FILE__ = (
9
+ "./src/scitex/browser/interaction/fill_with_fallbacks.py"
10
+ )
11
+ __DIR__ = os.path.dirname(__FILE__)
12
+ # ----------------------------------------
13
+
14
+ __FILE__ = __file__
15
+
16
+ from playwright.async_api import Page
17
+
18
+ from scitex import logging
19
+
20
+ logger = logging.getLogger(__name__)
21
+
22
+
23
+ # 1. Main entry point
24
+ # ---------------------------------------
25
+ async def fill_with_fallbacks_async(
26
+ page: Page, selector: str, value: str, method: str = "auto", verbose: bool = False
27
+ ) -> bool:
28
+ """Fill element using multiple fallback methods.
29
+
30
+ Args:
31
+ page: Playwright page object
32
+ selector: CSS selector for the element
33
+ value: Value to fill
34
+ method: Fill method ("auto", "playwright", "type", "js")
35
+ verbose: Enable visual feedback via popup system (default False)
36
+
37
+ Returns:
38
+ bool: True if fill successful, False otherwise
39
+ """
40
+ from ..debugging import browser_logger
41
+
42
+ if method == "auto":
43
+ methods_order = ["playwright", "type", "js"]
44
+ else:
45
+ methods_order = [method]
46
+
47
+ methods = {
48
+ "playwright": _fill_with_playwright,
49
+ "type": _fill_with_typing,
50
+ "js": _fill_with_js,
51
+ }
52
+
53
+ if verbose:
54
+ await browser_logger.debug(
55
+ page, f"Attempting fill: {selector}", verbose=verbose
56
+ )
57
+
58
+ for method_name in methods_order:
59
+ if method_name in methods:
60
+ success = await methods[method_name](page, selector, value)
61
+ if success:
62
+ logger.debug(f"Fill successful with {method_name}: {selector}")
63
+ if verbose:
64
+ await browser_logger.debug(
65
+ page, f"✓ Fill successful ({method_name}): {selector}", verbose=verbose
66
+ )
67
+ return True
68
+
69
+ logger.error(f"All fill methods failed for {selector}")
70
+ if verbose:
71
+ await browser_logger.debug(
72
+ page, f"✗ All fill methods failed: {selector}", verbose=verbose
73
+ )
74
+ return False
75
+
76
+
77
+ # 2. Helper functions
78
+ # ---------------------------------------
79
+ async def _fill_with_playwright(page: Page, selector: str, value: str) -> bool:
80
+ try:
81
+ await page.fill(selector, value, timeout=5000)
82
+ return True
83
+ except Exception:
84
+ return False
85
+
86
+
87
+ async def _fill_with_typing(page: Page, selector: str, value: str) -> bool:
88
+ try:
89
+ await page.click(selector, timeout=5000)
90
+ await page.keyboard.press("Control+a")
91
+ await page.type(selector, value, delay=50)
92
+ return True
93
+ except Exception:
94
+ return False
95
+
96
+
97
+ async def _fill_with_js(page: Page, selector: str, value: str) -> bool:
98
+ try:
99
+ result = await page.evaluate(
100
+ """(selector, value) => {
101
+ const element = document.querySelector(selector);
102
+ if (element) {
103
+ element.value = value;
104
+ element.dispatchEvent(new Event('input', { bubbles: true }));
105
+ element.dispatchEvent(new Event('change', { bubbles: true }));
106
+ return 'success';
107
+ }
108
+ return 'element not found';
109
+ }""",
110
+ selector,
111
+ value,
112
+ )
113
+ return result == "success"
114
+ except Exception:
115
+ return False
116
+
117
+
118
+ def main(args):
119
+ """Demonstrate fill_with_fallbacks functionality."""
120
+ import asyncio
121
+ from playwright.async_api import async_playwright
122
+ from ..debugging import browser_logger
123
+
124
+ async def demo():
125
+ async with async_playwright() as p:
126
+ browser = await p.chromium.launch(headless=False)
127
+ page = await browser.new_page()
128
+
129
+ await browser_logger.debug(
130
+ page, "Fill with Fallbacks: Starting demo", verbose=True
131
+ )
132
+
133
+ # Navigate to a page with input fields
134
+ await page.goto("https://www.google.com", timeout=30000)
135
+
136
+ await browser_logger.debug(
137
+ page, "Testing fill with fallbacks...", verbose=True
138
+ )
139
+
140
+ # Try to fill the search box
141
+ success = await fill_with_fallbacks_async(
142
+ page,
143
+ "textarea[name='q']", # Google search box
144
+ "SciTeX browser automation",
145
+ verbose=True
146
+ )
147
+
148
+ if success:
149
+ logger.success("Fill demonstration completed successfully")
150
+ else:
151
+ logger.warning("Fill demonstration: no input element found")
152
+
153
+ await browser_logger.debug(
154
+ page, "✓ Demo complete", verbose=True
155
+ )
156
+
157
+ await asyncio.sleep(2)
158
+ await browser.close()
159
+
160
+ asyncio.run(demo())
161
+ return 0
162
+
163
+
164
+ def parse_args():
165
+ """Parse command line arguments."""
166
+ import argparse
167
+ parser = argparse.ArgumentParser(description="Fill with fallbacks demo")
168
+ return parser.parse_args()
169
+
170
+
171
+ def run_main() -> None:
172
+ """Initialize scitex framework, run main function, and cleanup."""
173
+ global CONFIG, CC, sys, plt, rng
174
+
175
+ import sys
176
+
177
+ import matplotlib.pyplot as plt
178
+
179
+ import scitex as stx
180
+
181
+ args = parse_args()
182
+
183
+ CONFIG, sys.stdout, sys.stderr, plt, CC, rng = stx.session.start(
184
+ sys,
185
+ plt,
186
+ args=args,
187
+ file=__FILE__,
188
+ sdir_suffix=None,
189
+ verbose=False,
190
+ agg=True,
191
+ )
192
+
193
+ exit_status = main(args)
194
+
195
+ stx.session.close(
196
+ CONFIG,
197
+ verbose=False,
198
+ notify=False,
199
+ message="",
200
+ exit_status=exit_status,
201
+ )
202
+
203
+
204
+ if __name__ == "__main__":
205
+ run_main()
206
+
207
+ # python -m scitex.browser.interaction.fill_with_fallbacks
208
+
209
+ # EOF