scitex 2.0.0__py2.py3-none-any.whl → 2.1.0__py2.py3-none-any.whl

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Files changed (704) hide show
  1. scitex/__init__.py +53 -15
  2. scitex/__main__.py +72 -26
  3. scitex/__version__.py +1 -1
  4. scitex/_sh.py +145 -23
  5. scitex/ai/__init__.py +30 -16
  6. scitex/ai/_gen_ai/_Anthropic.py +5 -7
  7. scitex/ai/_gen_ai/_BaseGenAI.py +2 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +10 -2
  9. scitex/ai/_gen_ai/_Google.py +2 -2
  10. scitex/ai/_gen_ai/_Llama.py +2 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +2 -2
  12. scitex/ai/_gen_ai/_PARAMS.py +51 -65
  13. scitex/ai/_gen_ai/_Perplexity.py +2 -2
  14. scitex/ai/_gen_ai/__init__.py +25 -14
  15. scitex/ai/_gen_ai/_format_output_func.py +4 -4
  16. scitex/ai/classification/{classifier_server.py → Classifier.py} +5 -5
  17. scitex/ai/classification/CrossValidationExperiment.py +374 -0
  18. scitex/ai/classification/__init__.py +43 -4
  19. scitex/ai/classification/reporters/_BaseClassificationReporter.py +281 -0
  20. scitex/ai/classification/reporters/_ClassificationReporter.py +773 -0
  21. scitex/ai/classification/reporters/_MultiClassificationReporter.py +406 -0
  22. scitex/ai/classification/reporters/_SingleClassificationReporter.py +1834 -0
  23. scitex/ai/classification/reporters/__init__.py +11 -0
  24. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  25. scitex/ai/classification/reporters/reporter_utils/__init__.py +80 -0
  26. scitex/ai/classification/reporters/reporter_utils/aggregation.py +457 -0
  27. scitex/ai/classification/reporters/reporter_utils/data_models.py +313 -0
  28. scitex/ai/classification/reporters/reporter_utils/reporting.py +1056 -0
  29. scitex/ai/classification/reporters/reporter_utils/storage.py +221 -0
  30. scitex/ai/classification/reporters/reporter_utils/validation.py +395 -0
  31. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  32. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  33. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  35. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  36. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  37. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  38. scitex/ai/classification/timeseries/__init__.py +39 -0
  39. scitex/ai/classification/timeseries/_normalize_timestamp.py +436 -0
  40. scitex/ai/clustering/_umap.py +2 -2
  41. scitex/ai/feature_extraction/vit.py +1 -0
  42. scitex/ai/feature_selection/__init__.py +30 -0
  43. scitex/ai/feature_selection/feature_selection.py +364 -0
  44. scitex/ai/loss/multi_task_loss.py +1 -1
  45. scitex/ai/metrics/__init__.py +51 -4
  46. scitex/ai/metrics/_calc_bacc.py +61 -0
  47. scitex/ai/metrics/_calc_bacc_from_conf_mat.py +38 -0
  48. scitex/ai/metrics/_calc_clf_report.py +78 -0
  49. scitex/ai/metrics/_calc_conf_mat.py +93 -0
  50. scitex/ai/metrics/_calc_feature_importance.py +183 -0
  51. scitex/ai/metrics/_calc_mcc.py +61 -0
  52. scitex/ai/metrics/_calc_pre_rec_auc.py +116 -0
  53. scitex/ai/metrics/_calc_roc_auc.py +110 -0
  54. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +490 -0
  55. scitex/ai/metrics/{silhoute_score_block.py → _calc_silhouette_score.py} +15 -8
  56. scitex/ai/metrics/_normalize_labels.py +83 -0
  57. scitex/ai/plt/__init__.py +47 -8
  58. scitex/ai/plt/{_conf_mat.py → _plot_conf_mat.py} +158 -87
  59. scitex/ai/plt/_plot_feature_importance.py +323 -0
  60. scitex/ai/plt/_plot_learning_curve.py +345 -0
  61. scitex/ai/plt/_plot_optuna_study.py +225 -0
  62. scitex/ai/plt/_plot_pre_rec_curve.py +290 -0
  63. scitex/ai/plt/_plot_roc_curve.py +255 -0
  64. scitex/ai/training/{learning_curve_logger.py → _LearningCurveLogger.py} +197 -213
  65. scitex/ai/training/__init__.py +2 -2
  66. scitex/ai/utils/grid_search.py +3 -3
  67. scitex/benchmark/__init__.py +52 -0
  68. scitex/benchmark/benchmark.py +400 -0
  69. scitex/benchmark/monitor.py +370 -0
  70. scitex/benchmark/profiler.py +297 -0
  71. scitex/browser/__init__.py +48 -0
  72. scitex/browser/automation/CookieHandler.py +216 -0
  73. scitex/browser/automation/__init__.py +7 -0
  74. scitex/browser/collaboration/__init__.py +55 -0
  75. scitex/browser/collaboration/auth_helpers.py +94 -0
  76. scitex/browser/collaboration/collaborative_agent.py +136 -0
  77. scitex/browser/collaboration/credential_manager.py +188 -0
  78. scitex/browser/collaboration/interactive_panel.py +400 -0
  79. scitex/browser/collaboration/persistent_browser.py +170 -0
  80. scitex/browser/collaboration/shared_session.py +383 -0
  81. scitex/browser/collaboration/standard_interactions.py +246 -0
  82. scitex/browser/collaboration/visual_feedback.py +181 -0
  83. scitex/browser/core/BrowserMixin.py +326 -0
  84. scitex/browser/core/ChromeProfileManager.py +446 -0
  85. scitex/browser/core/__init__.py +9 -0
  86. scitex/browser/debugging/__init__.py +18 -0
  87. scitex/browser/debugging/_browser_logger.py +657 -0
  88. scitex/browser/debugging/_highlight_element.py +143 -0
  89. scitex/browser/debugging/_show_grid.py +154 -0
  90. scitex/browser/interaction/__init__.py +24 -0
  91. scitex/browser/interaction/click_center.py +149 -0
  92. scitex/browser/interaction/click_with_fallbacks.py +206 -0
  93. scitex/browser/interaction/close_popups.py +498 -0
  94. scitex/browser/interaction/fill_with_fallbacks.py +209 -0
  95. scitex/browser/pdf/__init__.py +14 -0
  96. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +200 -0
  97. scitex/browser/pdf/detect_chrome_pdf_viewer.py +198 -0
  98. scitex/browser/remote/CaptchaHandler.py +434 -0
  99. scitex/browser/remote/ZenRowsAPIClient.py +347 -0
  100. scitex/browser/remote/ZenRowsBrowserManager.py +570 -0
  101. scitex/browser/remote/__init__.py +11 -0
  102. scitex/browser/stealth/HumanBehavior.py +344 -0
  103. scitex/browser/stealth/StealthManager.py +1008 -0
  104. scitex/browser/stealth/__init__.py +9 -0
  105. scitex/browser/template.py +122 -0
  106. scitex/capture/__init__.py +110 -0
  107. scitex/capture/__main__.py +25 -0
  108. scitex/capture/capture.py +848 -0
  109. scitex/capture/cli.py +233 -0
  110. scitex/capture/gif.py +344 -0
  111. scitex/capture/mcp_server.py +961 -0
  112. scitex/capture/session.py +70 -0
  113. scitex/capture/utils.py +705 -0
  114. scitex/cli/__init__.py +17 -0
  115. scitex/cli/cloud.py +447 -0
  116. scitex/cli/main.py +42 -0
  117. scitex/cli/scholar.py +280 -0
  118. scitex/context/_suppress_output.py +5 -3
  119. scitex/db/__init__.py +30 -3
  120. scitex/db/__main__.py +75 -0
  121. scitex/db/_check_health.py +381 -0
  122. scitex/db/_delete_duplicates.py +25 -386
  123. scitex/db/_inspect.py +335 -114
  124. scitex/db/_inspect_optimized.py +301 -0
  125. scitex/db/{_PostgreSQL.py → _postgresql/_PostgreSQL.py} +3 -3
  126. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BackupMixin.py +1 -1
  127. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BatchMixin.py +1 -1
  128. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BlobMixin.py +1 -1
  129. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ConnectionMixin.py +1 -1
  130. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_MaintenanceMixin.py +1 -1
  131. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_QueryMixin.py +1 -1
  132. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_SchemaMixin.py +1 -1
  133. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TransactionMixin.py +1 -1
  134. scitex/db/_postgresql/__init__.py +6 -0
  135. scitex/db/_sqlite3/_SQLite3.py +210 -0
  136. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +581 -0
  137. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +517 -0
  138. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_BatchMixin.py +1 -1
  139. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +281 -0
  140. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +548 -0
  141. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +583 -0
  142. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ConnectionMixin.py +29 -13
  143. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +583 -0
  144. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ImportExportMixin.py +1 -1
  145. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_IndexMixin.py +1 -1
  146. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_MaintenanceMixin.py +2 -1
  147. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_QueryMixin.py +37 -10
  148. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_RowMixin.py +46 -6
  149. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TableMixin.py +56 -10
  150. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TransactionMixin.py +1 -1
  151. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/__init__.py +14 -2
  152. scitex/db/_sqlite3/__init__.py +7 -0
  153. scitex/db/_sqlite3/_delete_duplicates.py +274 -0
  154. scitex/decorators/__init__.py +2 -0
  155. scitex/decorators/_cache_disk.py +13 -5
  156. scitex/decorators/_cache_disk_async.py +49 -0
  157. scitex/decorators/_deprecated.py +175 -10
  158. scitex/decorators/_timeout.py +1 -1
  159. scitex/dev/_analyze_code_flow.py +2 -2
  160. scitex/dict/_DotDict.py +73 -15
  161. scitex/dict/_DotDict_v01-not-handling-recursive-instantiations.py +442 -0
  162. scitex/dict/_DotDict_v02-not-serializing-Path-object.py +446 -0
  163. scitex/dict/__init__.py +2 -0
  164. scitex/dict/_flatten.py +27 -0
  165. scitex/dsp/_crop.py +2 -2
  166. scitex/dsp/_demo_sig.py +2 -2
  167. scitex/dsp/_detect_ripples.py +2 -2
  168. scitex/dsp/_hilbert.py +2 -2
  169. scitex/dsp/_listen.py +6 -6
  170. scitex/dsp/_modulation_index.py +2 -2
  171. scitex/dsp/_pac.py +1 -1
  172. scitex/dsp/_psd.py +2 -2
  173. scitex/dsp/_resample.py +2 -1
  174. scitex/dsp/_time.py +3 -2
  175. scitex/dsp/_wavelet.py +3 -2
  176. scitex/dsp/add_noise.py +2 -2
  177. scitex/dsp/example.py +1 -0
  178. scitex/dsp/filt.py +10 -9
  179. scitex/dsp/template.py +3 -2
  180. scitex/dsp/utils/_differential_bandpass_filters.py +1 -1
  181. scitex/dsp/utils/pac.py +2 -2
  182. scitex/dt/_normalize_timestamp.py +432 -0
  183. scitex/errors.py +572 -0
  184. scitex/gen/_DimHandler.py +2 -2
  185. scitex/gen/__init__.py +37 -7
  186. scitex/gen/_deprecated_close.py +80 -0
  187. scitex/gen/_deprecated_start.py +26 -0
  188. scitex/gen/_detect_environment.py +152 -0
  189. scitex/gen/_detect_notebook_path.py +169 -0
  190. scitex/gen/_embed.py +6 -2
  191. scitex/gen/_get_notebook_path.py +257 -0
  192. scitex/gen/_less.py +1 -1
  193. scitex/gen/_list_packages.py +2 -2
  194. scitex/gen/_norm.py +44 -9
  195. scitex/gen/_norm_cache.py +269 -0
  196. scitex/gen/_src.py +3 -5
  197. scitex/gen/_title_case.py +3 -3
  198. scitex/io/__init__.py +28 -6
  199. scitex/io/_glob.py +13 -7
  200. scitex/io/_load.py +108 -21
  201. scitex/io/_load_cache.py +303 -0
  202. scitex/io/_load_configs.py +40 -15
  203. scitex/io/{_H5Explorer.py → _load_modules/_H5Explorer.py} +80 -17
  204. scitex/io/_load_modules/_ZarrExplorer.py +114 -0
  205. scitex/io/_load_modules/_bibtex.py +207 -0
  206. scitex/io/_load_modules/_hdf5.py +53 -178
  207. scitex/io/_load_modules/_json.py +5 -3
  208. scitex/io/_load_modules/_pdf.py +871 -16
  209. scitex/io/_load_modules/_sqlite3.py +15 -0
  210. scitex/io/_load_modules/_txt.py +41 -12
  211. scitex/io/_load_modules/_yaml.py +4 -3
  212. scitex/io/_load_modules/_zarr.py +126 -0
  213. scitex/io/_save.py +429 -171
  214. scitex/io/_save_modules/__init__.py +6 -0
  215. scitex/io/_save_modules/_bibtex.py +194 -0
  216. scitex/io/_save_modules/_csv.py +8 -4
  217. scitex/io/_save_modules/_excel.py +174 -15
  218. scitex/io/_save_modules/_hdf5.py +251 -226
  219. scitex/io/_save_modules/_image.py +1 -3
  220. scitex/io/_save_modules/_json.py +49 -4
  221. scitex/io/_save_modules/_listed_dfs_as_csv.py +1 -3
  222. scitex/io/_save_modules/_listed_scalars_as_csv.py +1 -3
  223. scitex/io/_save_modules/_tex.py +277 -0
  224. scitex/io/_save_modules/_yaml.py +42 -3
  225. scitex/io/_save_modules/_zarr.py +160 -0
  226. scitex/io/utils/__init__.py +20 -0
  227. scitex/io/utils/h5_to_zarr.py +616 -0
  228. scitex/linalg/_geometric_median.py +6 -2
  229. scitex/{gen/_tee.py → logging/_Tee.py} +43 -84
  230. scitex/logging/__init__.py +122 -0
  231. scitex/logging/_config.py +158 -0
  232. scitex/logging/_context.py +103 -0
  233. scitex/logging/_formatters.py +128 -0
  234. scitex/logging/_handlers.py +64 -0
  235. scitex/logging/_levels.py +35 -0
  236. scitex/logging/_logger.py +163 -0
  237. scitex/logging/_print_capture.py +95 -0
  238. scitex/ml/__init__.py +69 -0
  239. scitex/{ai/genai/anthropic.py → ml/_gen_ai/_Anthropic.py} +13 -19
  240. scitex/{ai/genai/base_genai.py → ml/_gen_ai/_BaseGenAI.py} +5 -5
  241. scitex/{ai/genai/deepseek.py → ml/_gen_ai/_DeepSeek.py} +11 -16
  242. scitex/{ai/genai/google.py → ml/_gen_ai/_Google.py} +7 -15
  243. scitex/{ai/genai/groq.py → ml/_gen_ai/_Groq.py} +1 -8
  244. scitex/{ai/genai/llama.py → ml/_gen_ai/_Llama.py} +3 -16
  245. scitex/{ai/genai/openai.py → ml/_gen_ai/_OpenAI.py} +3 -3
  246. scitex/{ai/genai/params.py → ml/_gen_ai/_PARAMS.py} +51 -65
  247. scitex/{ai/genai/perplexity.py → ml/_gen_ai/_Perplexity.py} +3 -14
  248. scitex/ml/_gen_ai/__init__.py +43 -0
  249. scitex/{ai/genai/calc_cost.py → ml/_gen_ai/_calc_cost.py} +1 -1
  250. scitex/{ai/genai/format_output_func.py → ml/_gen_ai/_format_output_func.py} +4 -4
  251. scitex/{ai/genai/genai_factory.py → ml/_gen_ai/_genai_factory.py} +8 -8
  252. scitex/ml/activation/__init__.py +8 -0
  253. scitex/ml/activation/_define.py +11 -0
  254. scitex/{ai/classifier_server.py → ml/classification/Classifier.py} +5 -5
  255. scitex/ml/classification/CrossValidationExperiment.py +374 -0
  256. scitex/ml/classification/__init__.py +46 -0
  257. scitex/ml/classification/reporters/_BaseClassificationReporter.py +281 -0
  258. scitex/ml/classification/reporters/_ClassificationReporter.py +773 -0
  259. scitex/ml/classification/reporters/_MultiClassificationReporter.py +406 -0
  260. scitex/ml/classification/reporters/_SingleClassificationReporter.py +1834 -0
  261. scitex/ml/classification/reporters/__init__.py +11 -0
  262. scitex/ml/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  263. scitex/ml/classification/reporters/reporter_utils/__init__.py +80 -0
  264. scitex/ml/classification/reporters/reporter_utils/aggregation.py +457 -0
  265. scitex/ml/classification/reporters/reporter_utils/data_models.py +313 -0
  266. scitex/ml/classification/reporters/reporter_utils/reporting.py +1056 -0
  267. scitex/ml/classification/reporters/reporter_utils/storage.py +221 -0
  268. scitex/ml/classification/reporters/reporter_utils/validation.py +395 -0
  269. scitex/ml/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  270. scitex/ml/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  271. scitex/ml/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  272. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  273. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  274. scitex/ml/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  275. scitex/ml/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  276. scitex/ml/classification/timeseries/__init__.py +39 -0
  277. scitex/ml/classification/timeseries/_normalize_timestamp.py +436 -0
  278. scitex/ml/clustering/__init__.py +11 -0
  279. scitex/ml/clustering/_pca.py +115 -0
  280. scitex/ml/clustering/_umap.py +376 -0
  281. scitex/ml/feature_extraction/__init__.py +56 -0
  282. scitex/ml/feature_extraction/vit.py +149 -0
  283. scitex/ml/feature_selection/__init__.py +30 -0
  284. scitex/ml/feature_selection/feature_selection.py +364 -0
  285. scitex/ml/loss/_L1L2Losses.py +34 -0
  286. scitex/ml/loss/__init__.py +12 -0
  287. scitex/ml/loss/multi_task_loss.py +47 -0
  288. scitex/ml/metrics/__init__.py +56 -0
  289. scitex/ml/metrics/_calc_bacc.py +61 -0
  290. scitex/ml/metrics/_calc_bacc_from_conf_mat.py +38 -0
  291. scitex/ml/metrics/_calc_clf_report.py +78 -0
  292. scitex/ml/metrics/_calc_conf_mat.py +93 -0
  293. scitex/ml/metrics/_calc_feature_importance.py +183 -0
  294. scitex/ml/metrics/_calc_mcc.py +61 -0
  295. scitex/ml/metrics/_calc_pre_rec_auc.py +116 -0
  296. scitex/ml/metrics/_calc_roc_auc.py +110 -0
  297. scitex/ml/metrics/_calc_seizure_prediction_metrics.py +490 -0
  298. scitex/ml/metrics/_calc_silhouette_score.py +503 -0
  299. scitex/ml/metrics/_normalize_labels.py +83 -0
  300. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/__init__.py +0 -0
  301. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/__init__.py +3 -0
  302. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +207 -0
  303. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +238 -0
  304. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +215 -0
  305. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/rangerqh.py +184 -0
  306. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/setup.py +24 -0
  307. scitex/ml/optim/__init__.py +13 -0
  308. scitex/ml/optim/_get_set.py +31 -0
  309. scitex/ml/optim/_optimizers.py +71 -0
  310. scitex/ml/plt/__init__.py +60 -0
  311. scitex/ml/plt/_plot_conf_mat.py +663 -0
  312. scitex/ml/plt/_plot_feature_importance.py +323 -0
  313. scitex/ml/plt/_plot_learning_curve.py +345 -0
  314. scitex/ml/plt/_plot_optuna_study.py +225 -0
  315. scitex/ml/plt/_plot_pre_rec_curve.py +290 -0
  316. scitex/ml/plt/_plot_roc_curve.py +255 -0
  317. scitex/ml/sk/__init__.py +11 -0
  318. scitex/ml/sk/_clf.py +58 -0
  319. scitex/ml/sk/_to_sktime.py +100 -0
  320. scitex/ml/sklearn/__init__.py +26 -0
  321. scitex/ml/sklearn/clf.py +58 -0
  322. scitex/ml/sklearn/to_sktime.py +100 -0
  323. scitex/{ai/training/early_stopping.py → ml/training/_EarlyStopping.py} +1 -2
  324. scitex/{ai → ml/training}/_LearningCurveLogger.py +198 -242
  325. scitex/ml/training/__init__.py +7 -0
  326. scitex/ml/utils/__init__.py +22 -0
  327. scitex/ml/utils/_check_params.py +50 -0
  328. scitex/ml/utils/_default_dataset.py +46 -0
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  331. scitex/ml/utils/_merge_labels.py +22 -0
  332. scitex/ml/utils/_sliding_window_data_augmentation.py +11 -0
  333. scitex/ml/utils/_under_sample.py +51 -0
  334. scitex/ml/utils/_verify_n_gpus.py +16 -0
  335. scitex/ml/utils/grid_search.py +148 -0
  336. scitex/nn/_BNet.py +15 -9
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  338. scitex/nn/_ModulationIndex.py +2 -2
  339. scitex/nn/_PAC.py +1 -1
  340. scitex/nn/_Spectrogram.py +12 -3
  341. scitex/nn/__init__.py +9 -10
  342. scitex/path/__init__.py +18 -0
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  344. scitex/path/_find.py +9 -4
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  351. scitex/plt/_subplots/_AxisWrapper.py +7 -3
  352. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +47 -13
  353. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +160 -2
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  357. scitex/plt/_subplots/_FigWrapper.py +62 -6
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  360. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +81 -0
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  365. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +35 -18
  366. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +1 -3
  367. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +1 -3
  368. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +1 -3
  369. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +1 -3
  370. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +1 -3
  371. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +1 -3
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  373. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +1 -3
  374. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_conf_mat.py +1 -3
  375. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_ecdf.py +1 -3
  376. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_fillv.py +1 -3
  377. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_heatmap.py +1 -3
  378. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_image.py +1 -3
  379. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_joyplot.py +1 -3
  380. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +1 -3
  381. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_line.py +1 -3
  382. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_ci.py +1 -3
  383. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_std.py +1 -3
  384. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_median_iqr.py +1 -3
  385. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_raster.py +1 -3
  386. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_rectangle.py +1 -3
  387. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +35 -0
  388. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter_hist.py +1 -3
  389. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_shaded_line.py +1 -3
  390. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_violin.py +1 -3
  391. scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +6 -4
  392. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +1 -3
  393. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +1 -3
  394. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +1 -3
  395. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +1 -3
  396. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +1 -3
  397. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +1 -3
  398. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +1 -3
  399. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +1 -3
  400. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +1 -3
  401. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +1 -3
  402. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +1 -3
  403. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +1 -3
  404. scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +60 -0
  405. scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +1 -3
  406. scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +1 -3
  407. scitex/plt/_subplots/_export_as_csv_formatters/test_formatters.py +1 -3
  408. scitex/plt/_subplots/_export_as_csv_formatters.py +56 -59
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  411. scitex/plt/ax/_style/_rotate_labels_v01.py +248 -0
  412. scitex/plt/ax/_style/_set_meta.py +11 -4
  413. scitex/plt/ax/_style/_set_supxyt.py +3 -3
  414. scitex/plt/ax/_style/_set_xyt.py +3 -3
  415. scitex/plt/ax/_style/_share_axes.py +2 -2
  416. scitex/plt/color/__init__.py +4 -4
  417. scitex/plt/color/{_get_colors_from_cmap.py → _get_colors_from_conf_matap.py} +7 -7
  418. scitex/plt/utils/_configure_mpl.py +99 -86
  419. scitex/plt/utils/_histogram_utils.py +1 -3
  420. scitex/plt/utils/_is_valid_axis.py +1 -3
  421. scitex/plt/utils/_scitex_config.py +1 -0
  422. scitex/repro/__init__.py +75 -0
  423. scitex/{reproduce → repro}/_gen_ID.py +1 -1
  424. scitex/{reproduce → repro}/_gen_timestamp.py +1 -1
  425. scitex/repro_rng/_RandomStateManager.py +590 -0
  426. scitex/repro_rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  427. scitex/repro_rng/__init__.py +39 -0
  428. scitex/reproduce/__init__.py +25 -13
  429. scitex/reproduce/_hash_array.py +22 -0
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  431. scitex/resource/_get_specs.py +2 -2
  432. scitex/resource/_log_processor_usages.py +2 -2
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  434. scitex/rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  435. scitex/rng/__init__.py +39 -0
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  437. scitex/scholar/__main__.py +319 -0
  438. scitex/scholar/auth/ScholarAuthManager.py +308 -0
  439. scitex/scholar/auth/__init__.py +12 -0
  440. scitex/scholar/auth/core/AuthenticationGateway.py +473 -0
  441. scitex/scholar/auth/core/BrowserAuthenticator.py +386 -0
  442. scitex/scholar/auth/core/StrategyResolver.py +309 -0
  443. scitex/scholar/auth/core/__init__.py +16 -0
  444. scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +120 -0
  445. scitex/scholar/auth/gateway/_OpenURLResolver.py +209 -0
  446. scitex/scholar/auth/gateway/__init__.py +38 -0
  447. scitex/scholar/auth/gateway/_resolve_functions.py +101 -0
  448. scitex/scholar/auth/providers/BaseAuthenticator.py +166 -0
  449. scitex/scholar/auth/providers/EZProxyAuthenticator.py +484 -0
  450. scitex/scholar/auth/providers/OpenAthensAuthenticator.py +619 -0
  451. scitex/scholar/auth/providers/ShibbolethAuthenticator.py +686 -0
  452. scitex/scholar/auth/providers/__init__.py +18 -0
  453. scitex/scholar/auth/session/AuthCacheManager.py +189 -0
  454. scitex/scholar/auth/session/SessionManager.py +159 -0
  455. scitex/scholar/auth/session/__init__.py +11 -0
  456. scitex/scholar/auth/sso/BaseSSOAutomator.py +373 -0
  457. scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +378 -0
  458. scitex/scholar/auth/sso/SSOAutomator.py +180 -0
  459. scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +380 -0
  460. scitex/scholar/auth/sso/__init__.py +15 -0
  461. scitex/scholar/browser/ScholarBrowserManager.py +705 -0
  462. scitex/scholar/browser/__init__.py +38 -0
  463. scitex/scholar/browser/utils/__init__.py +13 -0
  464. scitex/scholar/browser/utils/click_and_wait.py +205 -0
  465. scitex/scholar/browser/utils/close_unwanted_pages.py +140 -0
  466. scitex/scholar/browser/utils/wait_redirects.py +732 -0
  467. scitex/scholar/config/PublisherRules.py +132 -0
  468. scitex/scholar/config/ScholarConfig.py +126 -0
  469. scitex/scholar/config/__init__.py +17 -0
  470. scitex/scholar/core/Paper.py +627 -0
  471. scitex/scholar/core/Papers.py +722 -0
  472. scitex/scholar/core/Scholar.py +1975 -0
  473. scitex/scholar/core/__init__.py +9 -0
  474. scitex/scholar/impact_factor/ImpactFactorEngine.py +204 -0
  475. scitex/scholar/impact_factor/__init__.py +20 -0
  476. scitex/scholar/impact_factor/estimation/ImpactFactorEstimationEngine.py +0 -0
  477. scitex/scholar/impact_factor/estimation/__init__.py +40 -0
  478. scitex/scholar/impact_factor/estimation/build_database.py +0 -0
  479. scitex/scholar/impact_factor/estimation/core/__init__.py +28 -0
  480. scitex/scholar/impact_factor/estimation/core/cache_manager.py +523 -0
  481. scitex/scholar/impact_factor/estimation/core/calculator.py +355 -0
  482. scitex/scholar/impact_factor/estimation/core/journal_matcher.py +428 -0
  483. scitex/scholar/integration/__init__.py +59 -0
  484. scitex/scholar/integration/base.py +502 -0
  485. scitex/scholar/integration/mendeley/__init__.py +22 -0
  486. scitex/scholar/integration/mendeley/exporter.py +166 -0
  487. scitex/scholar/integration/mendeley/importer.py +236 -0
  488. scitex/scholar/integration/mendeley/linker.py +79 -0
  489. scitex/scholar/integration/mendeley/mapper.py +212 -0
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  493. scitex/scholar/integration/zotero/importer.py +372 -0
  494. scitex/scholar/integration/zotero/linker.py +415 -0
  495. scitex/scholar/integration/zotero/mapper.py +286 -0
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  498. scitex/scholar/metadata_engines/individual/ArXivEngine.py +397 -0
  499. scitex/scholar/metadata_engines/individual/CrossRefEngine.py +274 -0
  500. scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +263 -0
  501. scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +350 -0
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  503. scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +438 -0
  504. scitex/scholar/metadata_engines/individual/URLDOIEngine.py +410 -0
  505. scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +487 -0
  506. scitex/scholar/metadata_engines/individual/__init__.py +7 -0
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  510. scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +103 -0
  511. scitex/scholar/metadata_engines/utils/_standardize_metadata.py +376 -0
  512. scitex/scholar/pdf_download/ScholarPDFDownloader.py +579 -0
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  522. scitex/scholar/pipelines/ScholarPipelineSingle.py +767 -0
  523. scitex/scholar/pipelines/__init__.py +49 -0
  524. scitex/scholar/storage/BibTeXHandler.py +1018 -0
  525. scitex/scholar/storage/PaperIO.py +468 -0
  526. scitex/scholar/storage/ScholarLibrary.py +182 -0
  527. scitex/scholar/storage/_DeduplicationManager.py +548 -0
  528. scitex/scholar/storage/_LibraryCacheManager.py +724 -0
  529. scitex/scholar/storage/_LibraryManager.py +1835 -0
  530. scitex/scholar/storage/__init__.py +28 -0
  531. scitex/scholar/url_finder/ScholarURLFinder.py +379 -0
  532. scitex/scholar/url_finder/__init__.py +7 -0
  533. scitex/scholar/url_finder/strategies/__init__.py +33 -0
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  535. scitex/scholar/url_finder/strategies/find_pdf_urls_by_dropdown.py +67 -0
  536. scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +204 -0
  537. scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +256 -0
  538. scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +165 -0
  539. scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +163 -0
  540. scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +70 -0
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  543. scitex/scholar/utils/bibtex/_parse_bibtex.py +71 -0
  544. scitex/scholar/utils/cleanup/__init__.py +8 -0
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  546. scitex/scholar/utils/cleanup/cleanup_old_extractions.py +117 -0
  547. scitex/scholar/utils/text/_TextNormalizer.py +407 -0
  548. scitex/scholar/utils/text/__init__.py +9 -0
  549. scitex/scholar/zotero/__init__.py +38 -0
  550. scitex/session/__init__.py +51 -0
  551. scitex/session/_lifecycle.py +736 -0
  552. scitex/session/_manager.py +102 -0
  553. scitex/session/template.py +122 -0
  554. scitex/stats/__init__.py +30 -26
  555. scitex/stats/correct/__init__.py +21 -0
  556. scitex/stats/correct/_correct_bonferroni.py +551 -0
  557. scitex/stats/correct/_correct_fdr.py +634 -0
  558. scitex/stats/correct/_correct_holm.py +548 -0
  559. scitex/stats/correct/_correct_sidak.py +499 -0
  560. scitex/stats/descriptive/__init__.py +85 -0
  561. scitex/stats/descriptive/_circular.py +540 -0
  562. scitex/stats/descriptive/_describe.py +219 -0
  563. scitex/stats/descriptive/_nan.py +518 -0
  564. scitex/stats/descriptive/_real.py +189 -0
  565. scitex/stats/effect_sizes/__init__.py +41 -0
  566. scitex/stats/effect_sizes/_cliffs_delta.py +325 -0
  567. scitex/stats/effect_sizes/_cohens_d.py +342 -0
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  569. scitex/stats/effect_sizes/_eta_squared.py +302 -0
  570. scitex/stats/effect_sizes/_prob_superiority.py +296 -0
  571. scitex/stats/posthoc/__init__.py +19 -0
  572. scitex/stats/posthoc/_dunnett.py +463 -0
  573. scitex/stats/posthoc/_games_howell.py +383 -0
  574. scitex/stats/posthoc/_tukey_hsd.py +367 -0
  575. scitex/stats/power/__init__.py +19 -0
  576. scitex/stats/power/_power.py +433 -0
  577. scitex/stats/template.py +119 -0
  578. scitex/stats/utils/__init__.py +62 -0
  579. scitex/stats/utils/_effect_size.py +985 -0
  580. scitex/stats/utils/_formatters.py +270 -0
  581. scitex/stats/utils/_normalizers.py +927 -0
  582. scitex/stats/utils/_power.py +433 -0
  583. scitex/stats_v01/_EffectSizeCalculator.py +488 -0
  584. scitex/stats_v01/_StatisticalValidator.py +411 -0
  585. scitex/stats_v01/__init__.py +60 -0
  586. scitex/stats_v01/_additional_tests.py +415 -0
  587. scitex/{stats → stats_v01}/_p2stars.py +19 -5
  588. scitex/stats_v01/_two_sample_tests.py +141 -0
  589. scitex/stats_v01/desc/__init__.py +83 -0
  590. scitex/stats_v01/desc/_circular.py +540 -0
  591. scitex/stats_v01/desc/_describe.py +219 -0
  592. scitex/stats_v01/desc/_nan.py +518 -0
  593. scitex/{stats/desc/_nan.py → stats_v01/desc/_nan_v01-20250920_145731.py} +23 -12
  594. scitex/stats_v01/desc/_real.py +189 -0
  595. scitex/stats_v01/tests/__corr_test_optimized.py +221 -0
  596. scitex/stats_v01/tests/_corr_test_optimized.py +179 -0
  597. scitex/str/__init__.py +1 -3
  598. scitex/str/_clean_path.py +6 -2
  599. scitex/str/_latex_fallback.py +267 -160
  600. scitex/str/_parse.py +44 -36
  601. scitex/str/_printc.py +1 -3
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  605. scitex/template/create_research.py +80 -0
  606. scitex/template/create_singularity.py +80 -0
  607. scitex/units.py +291 -0
  608. scitex/utils/_compress_hdf5.py +14 -3
  609. scitex/utils/_email.py +21 -2
  610. scitex/utils/_grid.py +6 -4
  611. scitex/utils/_notify.py +13 -10
  612. scitex/utils/_verify_scitex_format.py +589 -0
  613. scitex/utils/_verify_scitex_format_v01.py +370 -0
  614. scitex/utils/template.py +122 -0
  615. scitex/web/_search_pubmed.py +62 -16
  616. scitex-2.1.0.dist-info/LICENSE +21 -0
  617. scitex-2.1.0.dist-info/METADATA +677 -0
  618. scitex-2.1.0.dist-info/RECORD +919 -0
  619. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/WHEEL +1 -1
  620. scitex-2.1.0.dist-info/entry_points.txt +3 -0
  621. scitex/ai/__Classifiers.py +0 -101
  622. scitex/ai/classification/classification_reporter.py +0 -1137
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  624. scitex/ai/classification_reporter.py +0 -1161
  625. scitex/ai/genai/__init__.py +0 -277
  626. scitex/ai/genai/anthropic_provider.py +0 -320
  627. scitex/ai/genai/anthropic_refactored.py +0 -109
  628. scitex/ai/genai/auth_manager.py +0 -200
  629. scitex/ai/genai/base_provider.py +0 -291
  630. scitex/ai/genai/chat_history.py +0 -307
  631. scitex/ai/genai/cost_tracker.py +0 -276
  632. scitex/ai/genai/deepseek_provider.py +0 -251
  633. scitex/ai/genai/google_provider.py +0 -228
  634. scitex/ai/genai/groq_provider.py +0 -248
  635. scitex/ai/genai/image_processor.py +0 -250
  636. scitex/ai/genai/llama_provider.py +0 -214
  637. scitex/ai/genai/mock_provider.py +0 -127
  638. scitex/ai/genai/model_registry.py +0 -304
  639. scitex/ai/genai/openai_provider.py +0 -293
  640. scitex/ai/genai/perplexity_provider.py +0 -205
  641. scitex/ai/genai/provider_base.py +0 -302
  642. scitex/ai/genai/provider_factory.py +0 -370
  643. scitex/ai/genai/response_handler.py +0 -235
  644. scitex/ai/layer/_Pass.py +0 -21
  645. scitex/ai/layer/__init__.py +0 -10
  646. scitex/ai/layer/_switch.py +0 -8
  647. scitex/ai/metrics/_bACC.py +0 -51
  648. scitex/ai/plt/_learning_curve.py +0 -194
  649. scitex/ai/plt/_optuna_study.py +0 -111
  650. scitex/ai/plt/aucs/__init__.py +0 -2
  651. scitex/ai/plt/aucs/example.py +0 -60
  652. scitex/ai/plt/aucs/pre_rec_auc.py +0 -223
  653. scitex/ai/plt/aucs/roc_auc.py +0 -246
  654. scitex/ai/sampling/undersample.py +0 -29
  655. scitex/db/_SQLite3.py +0 -2136
  656. scitex/db/_SQLite3Mixins/_BlobMixin.py +0 -229
  657. scitex/gen/_close.py +0 -222
  658. scitex/gen/_start.py +0 -451
  659. scitex/general/__init__.py +0 -5
  660. scitex/io/_load_modules/_db.py +0 -24
  661. scitex/life/__init__.py +0 -10
  662. scitex/life/_monitor_rain.py +0 -49
  663. scitex/reproduce/_fix_seeds.py +0 -45
  664. scitex/res/__init__.py +0 -5
  665. scitex/scholar/_local_search.py +0 -454
  666. scitex/scholar/_paper.py +0 -244
  667. scitex/scholar/_pdf_downloader.py +0 -325
  668. scitex/scholar/_search.py +0 -393
  669. scitex/scholar/_vector_search.py +0 -370
  670. scitex/scholar/_web_sources.py +0 -457
  671. scitex/stats/desc/__init__.py +0 -40
  672. scitex-2.0.0.dist-info/METADATA +0 -307
  673. scitex-2.0.0.dist-info/RECORD +0 -572
  674. scitex-2.0.0.dist-info/licenses/LICENSE +0 -7
  675. /scitex/ai/{act → activation}/__init__.py +0 -0
  676. /scitex/ai/{act → activation}/_define.py +0 -0
  677. /scitex/ai/{early_stopping.py → training/_EarlyStopping.py} +0 -0
  678. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ImportExportMixin.py +0 -0
  679. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_IndexMixin.py +0 -0
  680. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_RowMixin.py +0 -0
  681. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TableMixin.py +0 -0
  682. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/__init__.py +0 -0
  683. /scitex/{stats → stats_v01}/_calc_partial_corr.py +0 -0
  684. /scitex/{stats → stats_v01}/_corr_test_multi.py +0 -0
  685. /scitex/{stats → stats_v01}/_corr_test_wrapper.py +0 -0
  686. /scitex/{stats → stats_v01}/_describe_wrapper.py +0 -0
  687. /scitex/{stats → stats_v01}/_multiple_corrections.py +0 -0
  688. /scitex/{stats → stats_v01}/_nan_stats.py +0 -0
  689. /scitex/{stats → stats_v01}/_p2stars_wrapper.py +0 -0
  690. /scitex/{stats → stats_v01}/_statistical_tests.py +0 -0
  691. /scitex/{stats/desc/_describe.py → stats_v01/desc/_describe_v01-20250920_145731.py} +0 -0
  692. /scitex/{stats/desc/_real.py → stats_v01/desc/_real_v01-20250920_145731.py} +0 -0
  693. /scitex/{stats → stats_v01}/multiple/__init__.py +0 -0
  694. /scitex/{stats → stats_v01}/multiple/_bonferroni_correction.py +0 -0
  695. /scitex/{stats → stats_v01}/multiple/_fdr_correction.py +0 -0
  696. /scitex/{stats → stats_v01}/multiple/_multicompair.py +0 -0
  697. /scitex/{stats → stats_v01}/tests/__corr_test.py +0 -0
  698. /scitex/{stats → stats_v01}/tests/__corr_test_multi.py +0 -0
  699. /scitex/{stats → stats_v01}/tests/__corr_test_single.py +0 -0
  700. /scitex/{stats → stats_v01}/tests/__init__.py +0 -0
  701. /scitex/{stats → stats_v01}/tests/_brunner_munzel_test.py +0 -0
  702. /scitex/{stats → stats_v01}/tests/_nocorrelation_test.py +0 -0
  703. /scitex/{stats → stats_v01}/tests/_smirnov_grubbs.py +0 -0
  704. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,570 @@
1
+ #!/usr/bin/env python3
2
+ # -*- coding: utf-8 -*-
3
+ # Timestamp: "2025-07-31 22:08:31 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex_repo/src/scitex/scholar/browser/remote/_ZenRowsRemoteScholarBrowserManager.py
5
+ # ----------------------------------------
6
+ from __future__ import annotations
7
+ import os
8
+ __FILE__ = __file__
9
+ __DIR__ = os.path.dirname(__FILE__)
10
+ # ----------------------------------------
11
+
12
+ """
13
+ Browser manager specifically for the ZenRows Scraping Browser service.
14
+ This provides cloud-based Chrome instances with built-in anti-bot bypass.
15
+ """
16
+ from typing import Any, Optional, Dict
17
+
18
+ from playwright.async_api import Browser, BrowserContext, async_playwright, Page
19
+
20
+ from scitex import logging
21
+ from scitex.scholar.browser.local.utils._CookieAutoAcceptor import CookieAutoAcceptor
22
+ from ._ZenRowsAPIBrowser import ZenRowsAPIBrowser
23
+
24
+ logger = logging.getLogger(__name__)
25
+
26
+
27
+ class ZenRowsRemoteScholarBrowserManager:
28
+ """
29
+ Manages a connection to the remote ZenRows Scraping Browser service.
30
+ """
31
+
32
+ def __init__(
33
+ self,
34
+ auth_manager=None,
35
+ zenrows_api_key: Optional[str] = os.getenv(
36
+ "SCITEX_SCHOLAR_ZENROWS_API_KEY"
37
+ ),
38
+ proxy_country: Optional[str] = os.getenv(
39
+ "SCITEX_SCHOLAR_ZENROWS_PROXY_COUNTRY"
40
+ ),
41
+ **kwargs,
42
+ ):
43
+ """
44
+ Initialize ZenRows browser manager.
45
+
46
+ Args:
47
+ auth_manager: Authentication manager for cookie injection.
48
+ zenrows_api_key: ZenRows API key.
49
+ proxy_country: Country code for proxy routing (e.g., 'au', 'us').
50
+ Note: Country routing may only work with certain endpoints.
51
+ **kwargs: Additional arguments (ignored, for compatibility).
52
+ """
53
+ self.auth_manager = auth_manager
54
+ self.zenrows_api_key = zenrows_api_key
55
+ self.proxy_country = proxy_country
56
+ if not self.zenrows_api_key:
57
+ raise ValueError(
58
+ "ZenRows API key required. Set SCITEX_SCHOLAR_ZENROWS_API_KEY env var "
59
+ "or pass zenrows_api_key parameter"
60
+ )
61
+ self._playwright = None
62
+ self._browser: Optional[Browser] = None
63
+ self._context: Optional[BrowserContext] = None
64
+ self.cookie_acceptor = CookieAutoAcceptor()
65
+
66
+ # Also initialize API browser for reliable screenshots
67
+ self._api_browser = ZenRowsAPIBrowser(
68
+ api_key=self.zenrows_api_key,
69
+ proxy_country=self.proxy_country or "au"
70
+ )
71
+
72
+ async def get_browser_async(self) -> Browser:
73
+ """Connect to the ZenRows Scraping Browser."""
74
+ if self._browser and self._browser.is_connected():
75
+ return self._browser
76
+
77
+ logger.debug("Connecting to ZenRows Scraping Browser...")
78
+ if not self._playwright:
79
+ self._playwright = await async_playwright().start()
80
+
81
+ # Build connection URL with optional country parameter
82
+ connection_url = f"wss://browser.zenrows.com?apikey={self.zenrows_api_key}"
83
+
84
+ # Note: Country routing via WebSocket URL is not documented
85
+ # but we can try appending it as a parameter
86
+ if self.proxy_country:
87
+ connection_url += f"&proxy_country={self.proxy_country}"
88
+ logger.debug(f"Requesting proxy country: {self.proxy_country.upper()}")
89
+
90
+ try:
91
+ self._browser = await self._playwright.chromium.connect_over_cdp(
92
+ connection_url
93
+ )
94
+ logger.debug("Successfully connected to ZenRows browser")
95
+
96
+ # Log a note about country routing
97
+ if self.proxy_country:
98
+ logger.debug(
99
+ "Note: Country routing via Scraping Browser is experimental. "
100
+ "Use API mode for guaranteed country-specific IPs."
101
+ )
102
+
103
+ return self._browser
104
+ except Exception as e:
105
+ logger.error(f"Failed to connect to ZenRows browser: {e}")
106
+ raise
107
+
108
+ async def get_authenticated_browser_and_context_async(
109
+ self,
110
+ ) -> tuple[Browser, BrowserContext]:
111
+ """Get browser context with authentication cookies pre-loaded."""
112
+
113
+ if self.auth_manager is None:
114
+ err_msg = (
115
+ "Authentication manager is not set. "
116
+ "Initialize ScholarBrowserManager with an auth_manager to use this method."
117
+ )
118
+ raise ValueError(err_msg)
119
+
120
+ browser = await self.get_browser_async()
121
+
122
+ if browser.contexts:
123
+ context = browser.contexts[0]
124
+ else:
125
+ context = await browser.new_context()
126
+
127
+ # Inject cookie auto-acceptor
128
+ try:
129
+ await self.cookie_acceptor.inject_auto_acceptor_async(context)
130
+ logger.debug("Injected cookie auto-acceptor")
131
+ except Exception as e:
132
+ logger.warn(f"Failed to inject cookie acceptor: {e}")
133
+
134
+ if self.auth_manager and await self.auth_manager.is_authenticate_async():
135
+ try:
136
+ cookies = await self.auth_manager.get_auth_cookies_async()
137
+ await context.add_cookies(cookies)
138
+ logger.success(
139
+ f"Injected {len(cookies)} authentication cookies"
140
+ )
141
+ except Exception as e:
142
+ logger.error(f"Failed to inject auth cookies: {e}")
143
+
144
+ self._context = context
145
+ return browser, context
146
+
147
+ async def new_page(self, context: Optional[BrowserContext] = None) -> Any:
148
+ """Create a new page in the ZenRows browser."""
149
+ if not context:
150
+ _, context = await self.get_authenticated_browser_and_context_async()
151
+
152
+ page = await context.new_page()
153
+ await page.set_extra_http_headers(
154
+ {
155
+ "Accept-Language": "en-US,en;q=0.9",
156
+ "Accept-Encoding": "gzip, deflate, br",
157
+ }
158
+ )
159
+ return page
160
+
161
+ async def close(self):
162
+ """Close the ZenRows browser connection."""
163
+ if self._browser and self._browser.is_connected():
164
+ await self._browser.close()
165
+ logger.debug("Closed ZenRows browser connection")
166
+ if self._playwright:
167
+ await self._playwright.stop()
168
+ self._browser = None
169
+ self._context = None
170
+ self._playwright = None
171
+
172
+ async def take_screenshot_reliable_async(
173
+ self,
174
+ url: str,
175
+ output_path: str,
176
+ use_api: bool = True,
177
+ wait_ms: int = 5000
178
+ ) -> Dict[str, Any]:
179
+ """Take a screenshot with automatic CAPTCHA handling.
180
+
181
+ This method provides reliable screenshot capture by:
182
+ 1. Using the API approach by default (more reliable)
183
+ 2. Falling back to WebSocket browser if needed
184
+ 3. Automatically handling CAPTCHAs via ZenRows
185
+
186
+ Args:
187
+ url: URL to screenshot
188
+ output_path: Path to save screenshot
189
+ use_api: Use API browser (recommended) vs WebSocket
190
+ wait_ms: Additional wait time
191
+
192
+ Returns:
193
+ Dict with success status and details
194
+ """
195
+ if use_api:
196
+ # Use API browser for reliability
197
+ logger.debug("Using ZenRows API for screenshot (recommended)")
198
+ return await self._api_browser.navigate_and_screenshot_async(
199
+ url=url,
200
+ screenshot_path=output_path,
201
+ wait_ms=wait_ms
202
+ )
203
+ else:
204
+ # Use WebSocket browser (less reliable for captchas)
205
+ logger.debug("Using ZenRows WebSocket browser")
206
+ try:
207
+ browser = await self.get_browser_async()
208
+ context = await browser.new_context()
209
+ page = await context.new_page()
210
+
211
+ # Navigate
212
+ await page.goto(url, wait_until="domcontentloaded", timeout=30000)
213
+
214
+ # Wait for content
215
+ await page.wait_for_load_state("networkidle", timeout=10000)
216
+ await page.wait_for_timeout(wait_ms)
217
+
218
+ # Take screenshot
219
+ await page.screenshot(path=output_path, full_page=True)
220
+
221
+ await page.close()
222
+ await context.close()
223
+
224
+ return {
225
+ "success": True,
226
+ "screenshot": {
227
+ "saved": True,
228
+ "path": output_path
229
+ }
230
+ }
231
+ except Exception as e:
232
+ logger.error(f"WebSocket screenshot failed: {e}")
233
+ return {
234
+ "success": False,
235
+ "error": str(e)
236
+ }
237
+
238
+ async def navigate_and_extract_async(
239
+ self,
240
+ url: str,
241
+ extract_pdf_url: bool = True,
242
+ take_screenshot: bool = False,
243
+ screenshot_path: Optional[str] = None
244
+ ) -> Dict[str, Any]:
245
+ """Navigate to URL and extract information.
246
+
247
+ This combines navigation, screenshot, and data extraction.
248
+ Uses the API approach for better reliability.
249
+
250
+ Args:
251
+ url: Target URL
252
+ extract_pdf_url: Try to find PDF URL
253
+ take_screenshot: Whether to capture screenshot
254
+ screenshot_path: Where to save screenshot
255
+
256
+ Returns:
257
+ Dict with extracted data
258
+ """
259
+ result = await self._api_browser.navigate_and_screenshot_async(
260
+ url=url,
261
+ screenshot_path=screenshot_path if take_screenshot else None,
262
+ return_html=extract_pdf_url,
263
+ wait_ms=8000 # Longer wait for academic sites
264
+ )
265
+
266
+ if extract_pdf_url and result.get("html"):
267
+ # Try to extract PDF URL
268
+ import re
269
+ html = result["html"]
270
+
271
+ pdf_patterns = [
272
+ r'href="([^"]+\.pdf[^"]*)"',
273
+ r'content="([^"]+\.pdf[^"]*)"',
274
+ r'data-pdf-url="([^"]+)"',
275
+ r'pdfUrl["\']?\s*:\s*["\']([^"\']+)',
276
+ ]
277
+
278
+ for pattern in pdf_patterns:
279
+ match = re.search(pattern, html, re.IGNORECASE)
280
+ if match:
281
+ result["pdf_url"] = match.group(1)
282
+ logger.debug(f"Found PDF URL: {result['pdf_url']}")
283
+ break
284
+
285
+ return result
286
+
287
+ async def __aenter__(self):
288
+ """Async context manager entry."""
289
+ return self
290
+
291
+ async def __aexit__(self, exc_type, exc_val, exc_tb):
292
+ """Async context manager exit."""
293
+ await self.close()
294
+
295
+
296
+ if __name__ == "__main__":
297
+ import asyncio
298
+ import os
299
+
300
+ async def main():
301
+ """Comprehensive test of ZenRowsRemoteScholarBrowserManager with comparisons."""
302
+ import json
303
+ from pathlib import Path
304
+ from datetime import datetime
305
+
306
+ # Create screenshots directory
307
+ timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
308
+ screenshots_dir = Path(f"./screenshots_remote_{timestamp}")
309
+ screenshots_dir.mkdir(exist_ok=True)
310
+
311
+ # Test sites for comprehensive evaluation
312
+ test_sites = [
313
+ ("ip", "https://httpbin.org/ip", "Shows your public IP address"),
314
+ ("headers", "https://httpbin.org/headers", "HTTP headers sent by browser"),
315
+ ("bot_detection", "https://bot.sannysoft.com/", "Bot tests - green=good, red=detected"),
316
+ ("fingerprint", "https://pixelscan.net/", "Browser fingerprinting analysis"),
317
+ ("webrtc", "https://browserleaks.com/webrtc", "WebRTC IP leak test"),
318
+ ]
319
+
320
+ async def test_browser_async(browser_type, browser_manager, use_auth=False):
321
+ """Test a browser with all test sites."""
322
+ print(f"\n{'='*60}")
323
+ print(f"Testing: {browser_type}")
324
+ print('='*60)
325
+
326
+ results = {}
327
+
328
+ try:
329
+ if use_auth and hasattr(browser_manager, 'get_authenticated_browser_and_context_async'):
330
+ # For managers with auth support
331
+ browser, context = await browser_manager.get_authenticated_browser_and_context_async()
332
+ pages_via_context = True
333
+ else:
334
+ # Direct browser access
335
+ browser = await browser_manager.get_browser_async()
336
+ pages_via_context = False
337
+
338
+ for test_name, url, description in test_sites:
339
+ print(f"\n{test_name}: {description}")
340
+
341
+ page = None
342
+ try:
343
+ if pages_via_context:
344
+ page = await context.new_page()
345
+ else:
346
+ page = await browser.new_page()
347
+
348
+ # Navigate with timeout
349
+ await page.goto(url, wait_until="domcontentloaded", timeout=30000)
350
+
351
+ if test_name in ["ip", "headers"]:
352
+ # Extract text content
353
+ content = await page.text_content("pre")
354
+ print(f"Result: {content.strip()[:200]}...")
355
+
356
+ # Parse IP if available
357
+ if test_name == "ip":
358
+ try:
359
+ ip_data = json.loads(content)
360
+ results['ip'] = ip_data.get('origin', 'Unknown')
361
+ print(f"Detected IP: {results['ip']}")
362
+ except:
363
+ results['ip'] = 'Parse error'
364
+ else:
365
+ # Wait for dynamic content
366
+ await page.wait_for_timeout(5000)
367
+
368
+ # For fingerprint test, try to click start button
369
+ if test_name == "fingerprint":
370
+ try:
371
+ await page.click('button:has-text("Start")', timeout=3000)
372
+ await page.wait_for_timeout(5000)
373
+ except:
374
+ pass
375
+
376
+ # Take screenshot
377
+ screenshot_path = screenshots_dir / f"{browser_type.lower().replace(' ', '_')}_{test_name}.png"
378
+ await page.screenshot(path=screenshot_path, full_page=True)
379
+ print(f"Screenshot saved: {screenshot_path}")
380
+
381
+ results[test_name] = "Success"
382
+
383
+ except Exception as e:
384
+ print(f"Failed: {str(e)[:100]}...")
385
+ results[test_name] = f"Failed: {str(e)[:50]}"
386
+ finally:
387
+ if page:
388
+ await page.close()
389
+
390
+ # Clean up
391
+ if hasattr(browser_manager, 'close'):
392
+ await browser_manager.close()
393
+
394
+ except Exception as e:
395
+ print(f"Browser initialization failed: {str(e)}")
396
+ results['error'] = str(e)
397
+
398
+ return results
399
+
400
+ # Store all results
401
+ all_results = {}
402
+
403
+ # Test 1: Regular browser (baseline) - if available
404
+ print("\nChecking if we can import local browser for comparison...")
405
+ try:
406
+ from scitex.scholar.browser import ScholarBrowserManager
407
+
408
+ print("Initializing regular browser for baseline comparison...")
409
+ regular_manager = ScholarBrowserManager(headless=False)
410
+ regular_results = await test_browser_async("Regular Browser", regular_manager)
411
+ all_results["Regular Browser"] = regular_results
412
+ except Exception as e:
413
+ print(f"Regular browser not available for comparison: {e}")
414
+ all_results["Regular Browser"] = {"error": "Not available"}
415
+
416
+ # Test 2: ZenRows Remote Browser (default settings)
417
+ print("\nInitializing ZenRows Remote Browser...")
418
+ try:
419
+ zenrows_manager = ZenRowsRemoteScholarBrowserManager()
420
+ zenrows_results = await test_browser_async("ZenRows Remote", zenrows_manager)
421
+ all_results["ZenRows Remote"] = zenrows_results
422
+ except Exception as e:
423
+ print(f"ZenRows Remote test failed: {e}")
424
+ all_results["ZenRows Remote"] = {"error": str(e)}
425
+
426
+ # Test 3: ZenRows Remote Browser with country (if supported)
427
+ print("\nInitializing ZenRows Remote Browser with AU country...")
428
+ try:
429
+ zenrows_au_manager = ZenRowsRemoteScholarBrowserManager(proxy_country='au')
430
+ zenrows_au_results = await test_browser_async("ZenRows Remote AU", zenrows_au_manager)
431
+ all_results["ZenRows Remote AU"] = zenrows_au_results
432
+ except Exception as e:
433
+ print(f"ZenRows Remote AU test failed: {e}")
434
+ all_results["ZenRows Remote AU"] = {"error": str(e)}
435
+
436
+ # Test 4: Test the API client as well
437
+ print("\nTesting ZenRows API Client for comparison...")
438
+ try:
439
+ from ._ZenRowsAPIClient import ZenRowsAPIClient
440
+
441
+ print("Testing basic API request...")
442
+ api_client = ZenRowsAPIClient()
443
+ response = api_client.request("https://httpbin.org/ip")
444
+ if response.status_code == 200:
445
+ ip_data = json.loads(response.text)
446
+ print(f"API Client IP (Basic): {ip_data.get('origin', 'Unknown')}")
447
+ print(f"API Cost: {response.headers.get('X-Request-Cost', 'Unknown')} credits")
448
+ all_results["API Client Basic"] = {"ip": ip_data.get('origin', 'Unknown')}
449
+
450
+ print("\nTesting API with Australian proxy...")
451
+ api_client_au = ZenRowsAPIClient(default_country='au')
452
+ response_au = api_client_au.request("https://httpbin.org/ip")
453
+ if response_au.status_code == 200:
454
+ ip_data_au = json.loads(response_au.text)
455
+ print(f"API Client IP (AU): {ip_data_au.get('origin', 'Unknown')}")
456
+ print(f"API Cost: {response_au.headers.get('X-Request-Cost', 'Unknown')} credits")
457
+ all_results["API Client AU"] = {"ip": ip_data_au.get('origin', 'Unknown')}
458
+ except Exception as e:
459
+ print(f"API Client test failed: {e}")
460
+ all_results["API Client"] = {"error": str(e)}
461
+
462
+ # Print summary
463
+ print("\n" + "="*60)
464
+ print("SUMMARY REPORT")
465
+ print("="*60)
466
+
467
+ print("\nIP Addresses detected:")
468
+ for method, data in all_results.items():
469
+ if isinstance(data, dict):
470
+ ip = data.get('ip', 'Not tested')
471
+ else:
472
+ ip = 'Error'
473
+ print(f" {method:.<35} {ip}")
474
+
475
+ print(f"\nScreenshots saved in: {screenshots_dir.absolute()}")
476
+
477
+ # Save summary report
478
+ summary_path = screenshots_dir / "test_summary.json"
479
+ with open(summary_path, 'w') as f:
480
+ json.dump({
481
+ 'timestamp': timestamp,
482
+ 'results': all_results,
483
+ 'test_sites': [{"name": t[0], "url": t[1], "description": t[2]} for t in test_sites]
484
+ }, f, indent=2)
485
+ print(f"Summary report saved: {summary_path}")
486
+
487
+ # Comparison notes
488
+ print("\n" + "="*60)
489
+ print("COMPARISON NOTES:")
490
+ print("="*60)
491
+ print("1. Regular Browser: Uses your local IP, no proxy")
492
+ print("2. ZenRows Remote: Cloud browser with built-in anti-bot")
493
+ print("3. ZenRows Remote AU: Attempts Australian IP (experimental)")
494
+ print("4. API Client Basic: Direct API without country routing")
495
+ print("5. API Client AU: Guaranteed Australian IP via API mode")
496
+ print("\nRecommendation: Use API Client for country-specific needs,")
497
+ print("Remote Browser for complex JavaScript sites.")
498
+
499
+ # async def main():
500
+ # """Example usage of ZenRowsRemoteScholarBrowserManager."""
501
+ # # Get API key from environment or use a test key
502
+ # api_key = os.getenv(
503
+ # "SCITEX_SCHOLAR_ZENROWS_API_KEY", "your_api_key_here"
504
+ # )
505
+
506
+ # # Initialize remote browser manager
507
+ # async with ZenRowsRemoteScholarBrowserManager(api_key=api_key) as manager:
508
+ # try:
509
+ # # Connect to ZenRows Scraping Browser
510
+ # browser = await manager.connect()
511
+ # print("Connected to ZenRows Scraping Browser")
512
+
513
+ # # Get the browser context
514
+ # context = await manager.get_context()
515
+
516
+ # # Create a new page
517
+ # page = await context.new_page()
518
+
519
+ # # Navigate to a site with anti-bot protection
520
+ # print("Navigating to protected site...")
521
+ # await page.goto("https://httpbin.org/headers", wait_until="domcontentloaded", timeout=30000)
522
+
523
+ # # Get page content
524
+ # content = await page.content()
525
+ # print("Page loaded successfully")
526
+
527
+ # # Check headers to verify we're using ZenRows
528
+ # import json
529
+
530
+ # try:
531
+ # # Extract JSON from pre tag
532
+ # pre_element = await page.query_selector("pre")
533
+ # if pre_element:
534
+ # text = await pre_element.inner_text()
535
+ # headers = json.loads(text)
536
+ # print("\nRequest headers seen by server:")
537
+ # for key, value in headers.get("headers", {}).items():
538
+ # print(f" {key}: {value}")
539
+ # except Exception as e:
540
+ # print(f"Could not parse headers: {e}")
541
+
542
+ # # Example: Navigate to a site that requires authentication
543
+ # print("\nNavigating to academic site...")
544
+ # await page.goto("https://scholar.google.com", wait_until="domcontentloaded", timeout=30000)
545
+ # await page.wait_for_timeout(2000)
546
+
547
+ # # Take screenshot
548
+ # await page.screenshot(path="zenrows_remote_screenshot.png")
549
+ # print("Screenshot saved as zenrows_remote_screenshot.png")
550
+
551
+ # # Example: Handle dynamic content
552
+ # print("\nTesting dynamic content handling...")
553
+ # await page.goto("https://example.com", wait_until="domcontentloaded", timeout=30000)
554
+ # title = await page.title()
555
+ # print(f"Page title: {title}")
556
+
557
+ # except Exception as e:
558
+ # print(f"Error during browser operation: {e}")
559
+ # import traceback
560
+
561
+ # traceback.print_exc()
562
+
563
+ # print("\nZenRows browser session closed")
564
+
565
+ # Run the example
566
+ asyncio.run(main())
567
+
568
+ # python -m scitex.scholar.browser.remote._ZenRowsRemoteScholarBrowserManager
569
+
570
+ # EOF
@@ -0,0 +1,11 @@
1
+ """Remote browser components (ZenRows, CAPTCHA handling)."""
2
+
3
+ from .ZenRowsAPIClient import ZenRowsAPIBrowser
4
+ from .ZenRowsBrowserManager import ZenRowsRemoteScholarBrowserManager
5
+ from .CaptchaHandler import CaptchaHandler
6
+
7
+ __all__ = [
8
+ "ZenRowsAPIBrowser",
9
+ "ZenRowsRemoteScholarBrowserManager",
10
+ "CaptchaHandler",
11
+ ]