scitex 2.0.0__py2.py3-none-any.whl → 2.1.0__py2.py3-none-any.whl

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Files changed (704) hide show
  1. scitex/__init__.py +53 -15
  2. scitex/__main__.py +72 -26
  3. scitex/__version__.py +1 -1
  4. scitex/_sh.py +145 -23
  5. scitex/ai/__init__.py +30 -16
  6. scitex/ai/_gen_ai/_Anthropic.py +5 -7
  7. scitex/ai/_gen_ai/_BaseGenAI.py +2 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +10 -2
  9. scitex/ai/_gen_ai/_Google.py +2 -2
  10. scitex/ai/_gen_ai/_Llama.py +2 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +2 -2
  12. scitex/ai/_gen_ai/_PARAMS.py +51 -65
  13. scitex/ai/_gen_ai/_Perplexity.py +2 -2
  14. scitex/ai/_gen_ai/__init__.py +25 -14
  15. scitex/ai/_gen_ai/_format_output_func.py +4 -4
  16. scitex/ai/classification/{classifier_server.py → Classifier.py} +5 -5
  17. scitex/ai/classification/CrossValidationExperiment.py +374 -0
  18. scitex/ai/classification/__init__.py +43 -4
  19. scitex/ai/classification/reporters/_BaseClassificationReporter.py +281 -0
  20. scitex/ai/classification/reporters/_ClassificationReporter.py +773 -0
  21. scitex/ai/classification/reporters/_MultiClassificationReporter.py +406 -0
  22. scitex/ai/classification/reporters/_SingleClassificationReporter.py +1834 -0
  23. scitex/ai/classification/reporters/__init__.py +11 -0
  24. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  25. scitex/ai/classification/reporters/reporter_utils/__init__.py +80 -0
  26. scitex/ai/classification/reporters/reporter_utils/aggregation.py +457 -0
  27. scitex/ai/classification/reporters/reporter_utils/data_models.py +313 -0
  28. scitex/ai/classification/reporters/reporter_utils/reporting.py +1056 -0
  29. scitex/ai/classification/reporters/reporter_utils/storage.py +221 -0
  30. scitex/ai/classification/reporters/reporter_utils/validation.py +395 -0
  31. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  32. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  33. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  35. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  36. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  37. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  38. scitex/ai/classification/timeseries/__init__.py +39 -0
  39. scitex/ai/classification/timeseries/_normalize_timestamp.py +436 -0
  40. scitex/ai/clustering/_umap.py +2 -2
  41. scitex/ai/feature_extraction/vit.py +1 -0
  42. scitex/ai/feature_selection/__init__.py +30 -0
  43. scitex/ai/feature_selection/feature_selection.py +364 -0
  44. scitex/ai/loss/multi_task_loss.py +1 -1
  45. scitex/ai/metrics/__init__.py +51 -4
  46. scitex/ai/metrics/_calc_bacc.py +61 -0
  47. scitex/ai/metrics/_calc_bacc_from_conf_mat.py +38 -0
  48. scitex/ai/metrics/_calc_clf_report.py +78 -0
  49. scitex/ai/metrics/_calc_conf_mat.py +93 -0
  50. scitex/ai/metrics/_calc_feature_importance.py +183 -0
  51. scitex/ai/metrics/_calc_mcc.py +61 -0
  52. scitex/ai/metrics/_calc_pre_rec_auc.py +116 -0
  53. scitex/ai/metrics/_calc_roc_auc.py +110 -0
  54. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +490 -0
  55. scitex/ai/metrics/{silhoute_score_block.py → _calc_silhouette_score.py} +15 -8
  56. scitex/ai/metrics/_normalize_labels.py +83 -0
  57. scitex/ai/plt/__init__.py +47 -8
  58. scitex/ai/plt/{_conf_mat.py → _plot_conf_mat.py} +158 -87
  59. scitex/ai/plt/_plot_feature_importance.py +323 -0
  60. scitex/ai/plt/_plot_learning_curve.py +345 -0
  61. scitex/ai/plt/_plot_optuna_study.py +225 -0
  62. scitex/ai/plt/_plot_pre_rec_curve.py +290 -0
  63. scitex/ai/plt/_plot_roc_curve.py +255 -0
  64. scitex/ai/training/{learning_curve_logger.py → _LearningCurveLogger.py} +197 -213
  65. scitex/ai/training/__init__.py +2 -2
  66. scitex/ai/utils/grid_search.py +3 -3
  67. scitex/benchmark/__init__.py +52 -0
  68. scitex/benchmark/benchmark.py +400 -0
  69. scitex/benchmark/monitor.py +370 -0
  70. scitex/benchmark/profiler.py +297 -0
  71. scitex/browser/__init__.py +48 -0
  72. scitex/browser/automation/CookieHandler.py +216 -0
  73. scitex/browser/automation/__init__.py +7 -0
  74. scitex/browser/collaboration/__init__.py +55 -0
  75. scitex/browser/collaboration/auth_helpers.py +94 -0
  76. scitex/browser/collaboration/collaborative_agent.py +136 -0
  77. scitex/browser/collaboration/credential_manager.py +188 -0
  78. scitex/browser/collaboration/interactive_panel.py +400 -0
  79. scitex/browser/collaboration/persistent_browser.py +170 -0
  80. scitex/browser/collaboration/shared_session.py +383 -0
  81. scitex/browser/collaboration/standard_interactions.py +246 -0
  82. scitex/browser/collaboration/visual_feedback.py +181 -0
  83. scitex/browser/core/BrowserMixin.py +326 -0
  84. scitex/browser/core/ChromeProfileManager.py +446 -0
  85. scitex/browser/core/__init__.py +9 -0
  86. scitex/browser/debugging/__init__.py +18 -0
  87. scitex/browser/debugging/_browser_logger.py +657 -0
  88. scitex/browser/debugging/_highlight_element.py +143 -0
  89. scitex/browser/debugging/_show_grid.py +154 -0
  90. scitex/browser/interaction/__init__.py +24 -0
  91. scitex/browser/interaction/click_center.py +149 -0
  92. scitex/browser/interaction/click_with_fallbacks.py +206 -0
  93. scitex/browser/interaction/close_popups.py +498 -0
  94. scitex/browser/interaction/fill_with_fallbacks.py +209 -0
  95. scitex/browser/pdf/__init__.py +14 -0
  96. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +200 -0
  97. scitex/browser/pdf/detect_chrome_pdf_viewer.py +198 -0
  98. scitex/browser/remote/CaptchaHandler.py +434 -0
  99. scitex/browser/remote/ZenRowsAPIClient.py +347 -0
  100. scitex/browser/remote/ZenRowsBrowserManager.py +570 -0
  101. scitex/browser/remote/__init__.py +11 -0
  102. scitex/browser/stealth/HumanBehavior.py +344 -0
  103. scitex/browser/stealth/StealthManager.py +1008 -0
  104. scitex/browser/stealth/__init__.py +9 -0
  105. scitex/browser/template.py +122 -0
  106. scitex/capture/__init__.py +110 -0
  107. scitex/capture/__main__.py +25 -0
  108. scitex/capture/capture.py +848 -0
  109. scitex/capture/cli.py +233 -0
  110. scitex/capture/gif.py +344 -0
  111. scitex/capture/mcp_server.py +961 -0
  112. scitex/capture/session.py +70 -0
  113. scitex/capture/utils.py +705 -0
  114. scitex/cli/__init__.py +17 -0
  115. scitex/cli/cloud.py +447 -0
  116. scitex/cli/main.py +42 -0
  117. scitex/cli/scholar.py +280 -0
  118. scitex/context/_suppress_output.py +5 -3
  119. scitex/db/__init__.py +30 -3
  120. scitex/db/__main__.py +75 -0
  121. scitex/db/_check_health.py +381 -0
  122. scitex/db/_delete_duplicates.py +25 -386
  123. scitex/db/_inspect.py +335 -114
  124. scitex/db/_inspect_optimized.py +301 -0
  125. scitex/db/{_PostgreSQL.py → _postgresql/_PostgreSQL.py} +3 -3
  126. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BackupMixin.py +1 -1
  127. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BatchMixin.py +1 -1
  128. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_BlobMixin.py +1 -1
  129. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ConnectionMixin.py +1 -1
  130. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_MaintenanceMixin.py +1 -1
  131. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_QueryMixin.py +1 -1
  132. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_SchemaMixin.py +1 -1
  133. scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TransactionMixin.py +1 -1
  134. scitex/db/_postgresql/__init__.py +6 -0
  135. scitex/db/_sqlite3/_SQLite3.py +210 -0
  136. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +581 -0
  137. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +517 -0
  138. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_BatchMixin.py +1 -1
  139. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +281 -0
  140. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +548 -0
  141. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +583 -0
  142. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ConnectionMixin.py +29 -13
  143. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +583 -0
  144. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_ImportExportMixin.py +1 -1
  145. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_IndexMixin.py +1 -1
  146. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_MaintenanceMixin.py +2 -1
  147. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_QueryMixin.py +37 -10
  148. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_RowMixin.py +46 -6
  149. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TableMixin.py +56 -10
  150. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/_TransactionMixin.py +1 -1
  151. scitex/db/{_SQLite3Mixins → _sqlite3/_SQLite3Mixins}/__init__.py +14 -2
  152. scitex/db/_sqlite3/__init__.py +7 -0
  153. scitex/db/_sqlite3/_delete_duplicates.py +274 -0
  154. scitex/decorators/__init__.py +2 -0
  155. scitex/decorators/_cache_disk.py +13 -5
  156. scitex/decorators/_cache_disk_async.py +49 -0
  157. scitex/decorators/_deprecated.py +175 -10
  158. scitex/decorators/_timeout.py +1 -1
  159. scitex/dev/_analyze_code_flow.py +2 -2
  160. scitex/dict/_DotDict.py +73 -15
  161. scitex/dict/_DotDict_v01-not-handling-recursive-instantiations.py +442 -0
  162. scitex/dict/_DotDict_v02-not-serializing-Path-object.py +446 -0
  163. scitex/dict/__init__.py +2 -0
  164. scitex/dict/_flatten.py +27 -0
  165. scitex/dsp/_crop.py +2 -2
  166. scitex/dsp/_demo_sig.py +2 -2
  167. scitex/dsp/_detect_ripples.py +2 -2
  168. scitex/dsp/_hilbert.py +2 -2
  169. scitex/dsp/_listen.py +6 -6
  170. scitex/dsp/_modulation_index.py +2 -2
  171. scitex/dsp/_pac.py +1 -1
  172. scitex/dsp/_psd.py +2 -2
  173. scitex/dsp/_resample.py +2 -1
  174. scitex/dsp/_time.py +3 -2
  175. scitex/dsp/_wavelet.py +3 -2
  176. scitex/dsp/add_noise.py +2 -2
  177. scitex/dsp/example.py +1 -0
  178. scitex/dsp/filt.py +10 -9
  179. scitex/dsp/template.py +3 -2
  180. scitex/dsp/utils/_differential_bandpass_filters.py +1 -1
  181. scitex/dsp/utils/pac.py +2 -2
  182. scitex/dt/_normalize_timestamp.py +432 -0
  183. scitex/errors.py +572 -0
  184. scitex/gen/_DimHandler.py +2 -2
  185. scitex/gen/__init__.py +37 -7
  186. scitex/gen/_deprecated_close.py +80 -0
  187. scitex/gen/_deprecated_start.py +26 -0
  188. scitex/gen/_detect_environment.py +152 -0
  189. scitex/gen/_detect_notebook_path.py +169 -0
  190. scitex/gen/_embed.py +6 -2
  191. scitex/gen/_get_notebook_path.py +257 -0
  192. scitex/gen/_less.py +1 -1
  193. scitex/gen/_list_packages.py +2 -2
  194. scitex/gen/_norm.py +44 -9
  195. scitex/gen/_norm_cache.py +269 -0
  196. scitex/gen/_src.py +3 -5
  197. scitex/gen/_title_case.py +3 -3
  198. scitex/io/__init__.py +28 -6
  199. scitex/io/_glob.py +13 -7
  200. scitex/io/_load.py +108 -21
  201. scitex/io/_load_cache.py +303 -0
  202. scitex/io/_load_configs.py +40 -15
  203. scitex/io/{_H5Explorer.py → _load_modules/_H5Explorer.py} +80 -17
  204. scitex/io/_load_modules/_ZarrExplorer.py +114 -0
  205. scitex/io/_load_modules/_bibtex.py +207 -0
  206. scitex/io/_load_modules/_hdf5.py +53 -178
  207. scitex/io/_load_modules/_json.py +5 -3
  208. scitex/io/_load_modules/_pdf.py +871 -16
  209. scitex/io/_load_modules/_sqlite3.py +15 -0
  210. scitex/io/_load_modules/_txt.py +41 -12
  211. scitex/io/_load_modules/_yaml.py +4 -3
  212. scitex/io/_load_modules/_zarr.py +126 -0
  213. scitex/io/_save.py +429 -171
  214. scitex/io/_save_modules/__init__.py +6 -0
  215. scitex/io/_save_modules/_bibtex.py +194 -0
  216. scitex/io/_save_modules/_csv.py +8 -4
  217. scitex/io/_save_modules/_excel.py +174 -15
  218. scitex/io/_save_modules/_hdf5.py +251 -226
  219. scitex/io/_save_modules/_image.py +1 -3
  220. scitex/io/_save_modules/_json.py +49 -4
  221. scitex/io/_save_modules/_listed_dfs_as_csv.py +1 -3
  222. scitex/io/_save_modules/_listed_scalars_as_csv.py +1 -3
  223. scitex/io/_save_modules/_tex.py +277 -0
  224. scitex/io/_save_modules/_yaml.py +42 -3
  225. scitex/io/_save_modules/_zarr.py +160 -0
  226. scitex/io/utils/__init__.py +20 -0
  227. scitex/io/utils/h5_to_zarr.py +616 -0
  228. scitex/linalg/_geometric_median.py +6 -2
  229. scitex/{gen/_tee.py → logging/_Tee.py} +43 -84
  230. scitex/logging/__init__.py +122 -0
  231. scitex/logging/_config.py +158 -0
  232. scitex/logging/_context.py +103 -0
  233. scitex/logging/_formatters.py +128 -0
  234. scitex/logging/_handlers.py +64 -0
  235. scitex/logging/_levels.py +35 -0
  236. scitex/logging/_logger.py +163 -0
  237. scitex/logging/_print_capture.py +95 -0
  238. scitex/ml/__init__.py +69 -0
  239. scitex/{ai/genai/anthropic.py → ml/_gen_ai/_Anthropic.py} +13 -19
  240. scitex/{ai/genai/base_genai.py → ml/_gen_ai/_BaseGenAI.py} +5 -5
  241. scitex/{ai/genai/deepseek.py → ml/_gen_ai/_DeepSeek.py} +11 -16
  242. scitex/{ai/genai/google.py → ml/_gen_ai/_Google.py} +7 -15
  243. scitex/{ai/genai/groq.py → ml/_gen_ai/_Groq.py} +1 -8
  244. scitex/{ai/genai/llama.py → ml/_gen_ai/_Llama.py} +3 -16
  245. scitex/{ai/genai/openai.py → ml/_gen_ai/_OpenAI.py} +3 -3
  246. scitex/{ai/genai/params.py → ml/_gen_ai/_PARAMS.py} +51 -65
  247. scitex/{ai/genai/perplexity.py → ml/_gen_ai/_Perplexity.py} +3 -14
  248. scitex/ml/_gen_ai/__init__.py +43 -0
  249. scitex/{ai/genai/calc_cost.py → ml/_gen_ai/_calc_cost.py} +1 -1
  250. scitex/{ai/genai/format_output_func.py → ml/_gen_ai/_format_output_func.py} +4 -4
  251. scitex/{ai/genai/genai_factory.py → ml/_gen_ai/_genai_factory.py} +8 -8
  252. scitex/ml/activation/__init__.py +8 -0
  253. scitex/ml/activation/_define.py +11 -0
  254. scitex/{ai/classifier_server.py → ml/classification/Classifier.py} +5 -5
  255. scitex/ml/classification/CrossValidationExperiment.py +374 -0
  256. scitex/ml/classification/__init__.py +46 -0
  257. scitex/ml/classification/reporters/_BaseClassificationReporter.py +281 -0
  258. scitex/ml/classification/reporters/_ClassificationReporter.py +773 -0
  259. scitex/ml/classification/reporters/_MultiClassificationReporter.py +406 -0
  260. scitex/ml/classification/reporters/_SingleClassificationReporter.py +1834 -0
  261. scitex/ml/classification/reporters/__init__.py +11 -0
  262. scitex/ml/classification/reporters/reporter_utils/_Plotter.py +1028 -0
  263. scitex/ml/classification/reporters/reporter_utils/__init__.py +80 -0
  264. scitex/ml/classification/reporters/reporter_utils/aggregation.py +457 -0
  265. scitex/ml/classification/reporters/reporter_utils/data_models.py +313 -0
  266. scitex/ml/classification/reporters/reporter_utils/reporting.py +1056 -0
  267. scitex/ml/classification/reporters/reporter_utils/storage.py +221 -0
  268. scitex/ml/classification/reporters/reporter_utils/validation.py +395 -0
  269. scitex/ml/classification/timeseries/_TimeSeriesBlockingSplit.py +568 -0
  270. scitex/ml/classification/timeseries/_TimeSeriesCalendarSplit.py +688 -0
  271. scitex/ml/classification/timeseries/_TimeSeriesMetadata.py +139 -0
  272. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +1716 -0
  273. scitex/ml/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +1685 -0
  274. scitex/ml/classification/timeseries/_TimeSeriesStrategy.py +84 -0
  275. scitex/ml/classification/timeseries/_TimeSeriesStratifiedSplit.py +610 -0
  276. scitex/ml/classification/timeseries/__init__.py +39 -0
  277. scitex/ml/classification/timeseries/_normalize_timestamp.py +436 -0
  278. scitex/ml/clustering/__init__.py +11 -0
  279. scitex/ml/clustering/_pca.py +115 -0
  280. scitex/ml/clustering/_umap.py +376 -0
  281. scitex/ml/feature_extraction/__init__.py +56 -0
  282. scitex/ml/feature_extraction/vit.py +149 -0
  283. scitex/ml/feature_selection/__init__.py +30 -0
  284. scitex/ml/feature_selection/feature_selection.py +364 -0
  285. scitex/ml/loss/_L1L2Losses.py +34 -0
  286. scitex/ml/loss/__init__.py +12 -0
  287. scitex/ml/loss/multi_task_loss.py +47 -0
  288. scitex/ml/metrics/__init__.py +56 -0
  289. scitex/ml/metrics/_calc_bacc.py +61 -0
  290. scitex/ml/metrics/_calc_bacc_from_conf_mat.py +38 -0
  291. scitex/ml/metrics/_calc_clf_report.py +78 -0
  292. scitex/ml/metrics/_calc_conf_mat.py +93 -0
  293. scitex/ml/metrics/_calc_feature_importance.py +183 -0
  294. scitex/ml/metrics/_calc_mcc.py +61 -0
  295. scitex/ml/metrics/_calc_pre_rec_auc.py +116 -0
  296. scitex/ml/metrics/_calc_roc_auc.py +110 -0
  297. scitex/ml/metrics/_calc_seizure_prediction_metrics.py +490 -0
  298. scitex/ml/metrics/_calc_silhouette_score.py +503 -0
  299. scitex/ml/metrics/_normalize_labels.py +83 -0
  300. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/__init__.py +0 -0
  301. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/__init__.py +3 -0
  302. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +207 -0
  303. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +238 -0
  304. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +215 -0
  305. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/ranger/rangerqh.py +184 -0
  306. scitex/ml/optim/Ranger_Deep_Learning_Optimizer/setup.py +24 -0
  307. scitex/ml/optim/__init__.py +13 -0
  308. scitex/ml/optim/_get_set.py +31 -0
  309. scitex/ml/optim/_optimizers.py +71 -0
  310. scitex/ml/plt/__init__.py +60 -0
  311. scitex/ml/plt/_plot_conf_mat.py +663 -0
  312. scitex/ml/plt/_plot_feature_importance.py +323 -0
  313. scitex/ml/plt/_plot_learning_curve.py +345 -0
  314. scitex/ml/plt/_plot_optuna_study.py +225 -0
  315. scitex/ml/plt/_plot_pre_rec_curve.py +290 -0
  316. scitex/ml/plt/_plot_roc_curve.py +255 -0
  317. scitex/ml/sk/__init__.py +11 -0
  318. scitex/ml/sk/_clf.py +58 -0
  319. scitex/ml/sk/_to_sktime.py +100 -0
  320. scitex/ml/sklearn/__init__.py +26 -0
  321. scitex/ml/sklearn/clf.py +58 -0
  322. scitex/ml/sklearn/to_sktime.py +100 -0
  323. scitex/{ai/training/early_stopping.py → ml/training/_EarlyStopping.py} +1 -2
  324. scitex/{ai → ml/training}/_LearningCurveLogger.py +198 -242
  325. scitex/ml/training/__init__.py +7 -0
  326. scitex/ml/utils/__init__.py +22 -0
  327. scitex/ml/utils/_check_params.py +50 -0
  328. scitex/ml/utils/_default_dataset.py +46 -0
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  331. scitex/ml/utils/_merge_labels.py +22 -0
  332. scitex/ml/utils/_sliding_window_data_augmentation.py +11 -0
  333. scitex/ml/utils/_under_sample.py +51 -0
  334. scitex/ml/utils/_verify_n_gpus.py +16 -0
  335. scitex/ml/utils/grid_search.py +148 -0
  336. scitex/nn/_BNet.py +15 -9
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  338. scitex/nn/_ModulationIndex.py +2 -2
  339. scitex/nn/_PAC.py +1 -1
  340. scitex/nn/_Spectrogram.py +12 -3
  341. scitex/nn/__init__.py +9 -10
  342. scitex/path/__init__.py +18 -0
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  344. scitex/path/_find.py +9 -4
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  351. scitex/plt/_subplots/_AxisWrapper.py +7 -3
  352. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +47 -13
  353. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +160 -2
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  357. scitex/plt/_subplots/_FigWrapper.py +62 -6
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  360. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +81 -0
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  365. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +35 -18
  366. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +1 -3
  367. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +1 -3
  368. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +1 -3
  369. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +1 -3
  370. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +1 -3
  371. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +1 -3
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  373. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +1 -3
  374. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_conf_mat.py +1 -3
  375. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_ecdf.py +1 -3
  376. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_fillv.py +1 -3
  377. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_heatmap.py +1 -3
  378. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_image.py +1 -3
  379. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_joyplot.py +1 -3
  380. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +1 -3
  381. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_line.py +1 -3
  382. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_ci.py +1 -3
  383. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_mean_std.py +1 -3
  384. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_median_iqr.py +1 -3
  385. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_raster.py +1 -3
  386. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_rectangle.py +1 -3
  387. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +35 -0
  388. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter_hist.py +1 -3
  389. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_shaded_line.py +1 -3
  390. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_violin.py +1 -3
  391. scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +6 -4
  392. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +1 -3
  393. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +1 -3
  394. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +1 -3
  395. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +1 -3
  396. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +1 -3
  397. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +1 -3
  398. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +1 -3
  399. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +1 -3
  400. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +1 -3
  401. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +1 -3
  402. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +1 -3
  403. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +1 -3
  404. scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +60 -0
  405. scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +1 -3
  406. scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +1 -3
  407. scitex/plt/_subplots/_export_as_csv_formatters/test_formatters.py +1 -3
  408. scitex/plt/_subplots/_export_as_csv_formatters.py +56 -59
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  411. scitex/plt/ax/_style/_rotate_labels_v01.py +248 -0
  412. scitex/plt/ax/_style/_set_meta.py +11 -4
  413. scitex/plt/ax/_style/_set_supxyt.py +3 -3
  414. scitex/plt/ax/_style/_set_xyt.py +3 -3
  415. scitex/plt/ax/_style/_share_axes.py +2 -2
  416. scitex/plt/color/__init__.py +4 -4
  417. scitex/plt/color/{_get_colors_from_cmap.py → _get_colors_from_conf_matap.py} +7 -7
  418. scitex/plt/utils/_configure_mpl.py +99 -86
  419. scitex/plt/utils/_histogram_utils.py +1 -3
  420. scitex/plt/utils/_is_valid_axis.py +1 -3
  421. scitex/plt/utils/_scitex_config.py +1 -0
  422. scitex/repro/__init__.py +75 -0
  423. scitex/{reproduce → repro}/_gen_ID.py +1 -1
  424. scitex/{reproduce → repro}/_gen_timestamp.py +1 -1
  425. scitex/repro_rng/_RandomStateManager.py +590 -0
  426. scitex/repro_rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  427. scitex/repro_rng/__init__.py +39 -0
  428. scitex/reproduce/__init__.py +25 -13
  429. scitex/reproduce/_hash_array.py +22 -0
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  431. scitex/resource/_get_specs.py +2 -2
  432. scitex/resource/_log_processor_usages.py +2 -2
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  434. scitex/rng/_RandomStateManager_v01-no-verbose-options.py +414 -0
  435. scitex/rng/__init__.py +39 -0
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  437. scitex/scholar/__main__.py +319 -0
  438. scitex/scholar/auth/ScholarAuthManager.py +308 -0
  439. scitex/scholar/auth/__init__.py +12 -0
  440. scitex/scholar/auth/core/AuthenticationGateway.py +473 -0
  441. scitex/scholar/auth/core/BrowserAuthenticator.py +386 -0
  442. scitex/scholar/auth/core/StrategyResolver.py +309 -0
  443. scitex/scholar/auth/core/__init__.py +16 -0
  444. scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +120 -0
  445. scitex/scholar/auth/gateway/_OpenURLResolver.py +209 -0
  446. scitex/scholar/auth/gateway/__init__.py +38 -0
  447. scitex/scholar/auth/gateway/_resolve_functions.py +101 -0
  448. scitex/scholar/auth/providers/BaseAuthenticator.py +166 -0
  449. scitex/scholar/auth/providers/EZProxyAuthenticator.py +484 -0
  450. scitex/scholar/auth/providers/OpenAthensAuthenticator.py +619 -0
  451. scitex/scholar/auth/providers/ShibbolethAuthenticator.py +686 -0
  452. scitex/scholar/auth/providers/__init__.py +18 -0
  453. scitex/scholar/auth/session/AuthCacheManager.py +189 -0
  454. scitex/scholar/auth/session/SessionManager.py +159 -0
  455. scitex/scholar/auth/session/__init__.py +11 -0
  456. scitex/scholar/auth/sso/BaseSSOAutomator.py +373 -0
  457. scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +378 -0
  458. scitex/scholar/auth/sso/SSOAutomator.py +180 -0
  459. scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +380 -0
  460. scitex/scholar/auth/sso/__init__.py +15 -0
  461. scitex/scholar/browser/ScholarBrowserManager.py +705 -0
  462. scitex/scholar/browser/__init__.py +38 -0
  463. scitex/scholar/browser/utils/__init__.py +13 -0
  464. scitex/scholar/browser/utils/click_and_wait.py +205 -0
  465. scitex/scholar/browser/utils/close_unwanted_pages.py +140 -0
  466. scitex/scholar/browser/utils/wait_redirects.py +732 -0
  467. scitex/scholar/config/PublisherRules.py +132 -0
  468. scitex/scholar/config/ScholarConfig.py +126 -0
  469. scitex/scholar/config/__init__.py +17 -0
  470. scitex/scholar/core/Paper.py +627 -0
  471. scitex/scholar/core/Papers.py +722 -0
  472. scitex/scholar/core/Scholar.py +1975 -0
  473. scitex/scholar/core/__init__.py +9 -0
  474. scitex/scholar/impact_factor/ImpactFactorEngine.py +204 -0
  475. scitex/scholar/impact_factor/__init__.py +20 -0
  476. scitex/scholar/impact_factor/estimation/ImpactFactorEstimationEngine.py +0 -0
  477. scitex/scholar/impact_factor/estimation/__init__.py +40 -0
  478. scitex/scholar/impact_factor/estimation/build_database.py +0 -0
  479. scitex/scholar/impact_factor/estimation/core/__init__.py +28 -0
  480. scitex/scholar/impact_factor/estimation/core/cache_manager.py +523 -0
  481. scitex/scholar/impact_factor/estimation/core/calculator.py +355 -0
  482. scitex/scholar/impact_factor/estimation/core/journal_matcher.py +428 -0
  483. scitex/scholar/integration/__init__.py +59 -0
  484. scitex/scholar/integration/base.py +502 -0
  485. scitex/scholar/integration/mendeley/__init__.py +22 -0
  486. scitex/scholar/integration/mendeley/exporter.py +166 -0
  487. scitex/scholar/integration/mendeley/importer.py +236 -0
  488. scitex/scholar/integration/mendeley/linker.py +79 -0
  489. scitex/scholar/integration/mendeley/mapper.py +212 -0
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  493. scitex/scholar/integration/zotero/importer.py +372 -0
  494. scitex/scholar/integration/zotero/linker.py +415 -0
  495. scitex/scholar/integration/zotero/mapper.py +286 -0
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  498. scitex/scholar/metadata_engines/individual/ArXivEngine.py +397 -0
  499. scitex/scholar/metadata_engines/individual/CrossRefEngine.py +274 -0
  500. scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +263 -0
  501. scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +350 -0
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  503. scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +438 -0
  504. scitex/scholar/metadata_engines/individual/URLDOIEngine.py +410 -0
  505. scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +487 -0
  506. scitex/scholar/metadata_engines/individual/__init__.py +7 -0
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  510. scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +103 -0
  511. scitex/scholar/metadata_engines/utils/_standardize_metadata.py +376 -0
  512. scitex/scholar/pdf_download/ScholarPDFDownloader.py +579 -0
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  522. scitex/scholar/pipelines/ScholarPipelineSingle.py +767 -0
  523. scitex/scholar/pipelines/__init__.py +49 -0
  524. scitex/scholar/storage/BibTeXHandler.py +1018 -0
  525. scitex/scholar/storage/PaperIO.py +468 -0
  526. scitex/scholar/storage/ScholarLibrary.py +182 -0
  527. scitex/scholar/storage/_DeduplicationManager.py +548 -0
  528. scitex/scholar/storage/_LibraryCacheManager.py +724 -0
  529. scitex/scholar/storage/_LibraryManager.py +1835 -0
  530. scitex/scholar/storage/__init__.py +28 -0
  531. scitex/scholar/url_finder/ScholarURLFinder.py +379 -0
  532. scitex/scholar/url_finder/__init__.py +7 -0
  533. scitex/scholar/url_finder/strategies/__init__.py +33 -0
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  535. scitex/scholar/url_finder/strategies/find_pdf_urls_by_dropdown.py +67 -0
  536. scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +204 -0
  537. scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +256 -0
  538. scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +165 -0
  539. scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +163 -0
  540. scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +70 -0
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  543. scitex/scholar/utils/bibtex/_parse_bibtex.py +71 -0
  544. scitex/scholar/utils/cleanup/__init__.py +8 -0
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  546. scitex/scholar/utils/cleanup/cleanup_old_extractions.py +117 -0
  547. scitex/scholar/utils/text/_TextNormalizer.py +407 -0
  548. scitex/scholar/utils/text/__init__.py +9 -0
  549. scitex/scholar/zotero/__init__.py +38 -0
  550. scitex/session/__init__.py +51 -0
  551. scitex/session/_lifecycle.py +736 -0
  552. scitex/session/_manager.py +102 -0
  553. scitex/session/template.py +122 -0
  554. scitex/stats/__init__.py +30 -26
  555. scitex/stats/correct/__init__.py +21 -0
  556. scitex/stats/correct/_correct_bonferroni.py +551 -0
  557. scitex/stats/correct/_correct_fdr.py +634 -0
  558. scitex/stats/correct/_correct_holm.py +548 -0
  559. scitex/stats/correct/_correct_sidak.py +499 -0
  560. scitex/stats/descriptive/__init__.py +85 -0
  561. scitex/stats/descriptive/_circular.py +540 -0
  562. scitex/stats/descriptive/_describe.py +219 -0
  563. scitex/stats/descriptive/_nan.py +518 -0
  564. scitex/stats/descriptive/_real.py +189 -0
  565. scitex/stats/effect_sizes/__init__.py +41 -0
  566. scitex/stats/effect_sizes/_cliffs_delta.py +325 -0
  567. scitex/stats/effect_sizes/_cohens_d.py +342 -0
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  569. scitex/stats/effect_sizes/_eta_squared.py +302 -0
  570. scitex/stats/effect_sizes/_prob_superiority.py +296 -0
  571. scitex/stats/posthoc/__init__.py +19 -0
  572. scitex/stats/posthoc/_dunnett.py +463 -0
  573. scitex/stats/posthoc/_games_howell.py +383 -0
  574. scitex/stats/posthoc/_tukey_hsd.py +367 -0
  575. scitex/stats/power/__init__.py +19 -0
  576. scitex/stats/power/_power.py +433 -0
  577. scitex/stats/template.py +119 -0
  578. scitex/stats/utils/__init__.py +62 -0
  579. scitex/stats/utils/_effect_size.py +985 -0
  580. scitex/stats/utils/_formatters.py +270 -0
  581. scitex/stats/utils/_normalizers.py +927 -0
  582. scitex/stats/utils/_power.py +433 -0
  583. scitex/stats_v01/_EffectSizeCalculator.py +488 -0
  584. scitex/stats_v01/_StatisticalValidator.py +411 -0
  585. scitex/stats_v01/__init__.py +60 -0
  586. scitex/stats_v01/_additional_tests.py +415 -0
  587. scitex/{stats → stats_v01}/_p2stars.py +19 -5
  588. scitex/stats_v01/_two_sample_tests.py +141 -0
  589. scitex/stats_v01/desc/__init__.py +83 -0
  590. scitex/stats_v01/desc/_circular.py +540 -0
  591. scitex/stats_v01/desc/_describe.py +219 -0
  592. scitex/stats_v01/desc/_nan.py +518 -0
  593. scitex/{stats/desc/_nan.py → stats_v01/desc/_nan_v01-20250920_145731.py} +23 -12
  594. scitex/stats_v01/desc/_real.py +189 -0
  595. scitex/stats_v01/tests/__corr_test_optimized.py +221 -0
  596. scitex/stats_v01/tests/_corr_test_optimized.py +179 -0
  597. scitex/str/__init__.py +1 -3
  598. scitex/str/_clean_path.py +6 -2
  599. scitex/str/_latex_fallback.py +267 -160
  600. scitex/str/_parse.py +44 -36
  601. scitex/str/_printc.py +1 -3
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  605. scitex/template/create_research.py +80 -0
  606. scitex/template/create_singularity.py +80 -0
  607. scitex/units.py +291 -0
  608. scitex/utils/_compress_hdf5.py +14 -3
  609. scitex/utils/_email.py +21 -2
  610. scitex/utils/_grid.py +6 -4
  611. scitex/utils/_notify.py +13 -10
  612. scitex/utils/_verify_scitex_format.py +589 -0
  613. scitex/utils/_verify_scitex_format_v01.py +370 -0
  614. scitex/utils/template.py +122 -0
  615. scitex/web/_search_pubmed.py +62 -16
  616. scitex-2.1.0.dist-info/LICENSE +21 -0
  617. scitex-2.1.0.dist-info/METADATA +677 -0
  618. scitex-2.1.0.dist-info/RECORD +919 -0
  619. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/WHEEL +1 -1
  620. scitex-2.1.0.dist-info/entry_points.txt +3 -0
  621. scitex/ai/__Classifiers.py +0 -101
  622. scitex/ai/classification/classification_reporter.py +0 -1137
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  624. scitex/ai/classification_reporter.py +0 -1161
  625. scitex/ai/genai/__init__.py +0 -277
  626. scitex/ai/genai/anthropic_provider.py +0 -320
  627. scitex/ai/genai/anthropic_refactored.py +0 -109
  628. scitex/ai/genai/auth_manager.py +0 -200
  629. scitex/ai/genai/base_provider.py +0 -291
  630. scitex/ai/genai/chat_history.py +0 -307
  631. scitex/ai/genai/cost_tracker.py +0 -276
  632. scitex/ai/genai/deepseek_provider.py +0 -251
  633. scitex/ai/genai/google_provider.py +0 -228
  634. scitex/ai/genai/groq_provider.py +0 -248
  635. scitex/ai/genai/image_processor.py +0 -250
  636. scitex/ai/genai/llama_provider.py +0 -214
  637. scitex/ai/genai/mock_provider.py +0 -127
  638. scitex/ai/genai/model_registry.py +0 -304
  639. scitex/ai/genai/openai_provider.py +0 -293
  640. scitex/ai/genai/perplexity_provider.py +0 -205
  641. scitex/ai/genai/provider_base.py +0 -302
  642. scitex/ai/genai/provider_factory.py +0 -370
  643. scitex/ai/genai/response_handler.py +0 -235
  644. scitex/ai/layer/_Pass.py +0 -21
  645. scitex/ai/layer/__init__.py +0 -10
  646. scitex/ai/layer/_switch.py +0 -8
  647. scitex/ai/metrics/_bACC.py +0 -51
  648. scitex/ai/plt/_learning_curve.py +0 -194
  649. scitex/ai/plt/_optuna_study.py +0 -111
  650. scitex/ai/plt/aucs/__init__.py +0 -2
  651. scitex/ai/plt/aucs/example.py +0 -60
  652. scitex/ai/plt/aucs/pre_rec_auc.py +0 -223
  653. scitex/ai/plt/aucs/roc_auc.py +0 -246
  654. scitex/ai/sampling/undersample.py +0 -29
  655. scitex/db/_SQLite3.py +0 -2136
  656. scitex/db/_SQLite3Mixins/_BlobMixin.py +0 -229
  657. scitex/gen/_close.py +0 -222
  658. scitex/gen/_start.py +0 -451
  659. scitex/general/__init__.py +0 -5
  660. scitex/io/_load_modules/_db.py +0 -24
  661. scitex/life/__init__.py +0 -10
  662. scitex/life/_monitor_rain.py +0 -49
  663. scitex/reproduce/_fix_seeds.py +0 -45
  664. scitex/res/__init__.py +0 -5
  665. scitex/scholar/_local_search.py +0 -454
  666. scitex/scholar/_paper.py +0 -244
  667. scitex/scholar/_pdf_downloader.py +0 -325
  668. scitex/scholar/_search.py +0 -393
  669. scitex/scholar/_vector_search.py +0 -370
  670. scitex/scholar/_web_sources.py +0 -457
  671. scitex/stats/desc/__init__.py +0 -40
  672. scitex-2.0.0.dist-info/METADATA +0 -307
  673. scitex-2.0.0.dist-info/RECORD +0 -572
  674. scitex-2.0.0.dist-info/licenses/LICENSE +0 -7
  675. /scitex/ai/{act → activation}/__init__.py +0 -0
  676. /scitex/ai/{act → activation}/_define.py +0 -0
  677. /scitex/ai/{early_stopping.py → training/_EarlyStopping.py} +0 -0
  678. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_ImportExportMixin.py +0 -0
  679. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_IndexMixin.py +0 -0
  680. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_RowMixin.py +0 -0
  681. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/_TableMixin.py +0 -0
  682. /scitex/db/{_PostgreSQLMixins → _postgresql/_PostgreSQLMixins}/__init__.py +0 -0
  683. /scitex/{stats → stats_v01}/_calc_partial_corr.py +0 -0
  684. /scitex/{stats → stats_v01}/_corr_test_multi.py +0 -0
  685. /scitex/{stats → stats_v01}/_corr_test_wrapper.py +0 -0
  686. /scitex/{stats → stats_v01}/_describe_wrapper.py +0 -0
  687. /scitex/{stats → stats_v01}/_multiple_corrections.py +0 -0
  688. /scitex/{stats → stats_v01}/_nan_stats.py +0 -0
  689. /scitex/{stats → stats_v01}/_p2stars_wrapper.py +0 -0
  690. /scitex/{stats → stats_v01}/_statistical_tests.py +0 -0
  691. /scitex/{stats/desc/_describe.py → stats_v01/desc/_describe_v01-20250920_145731.py} +0 -0
  692. /scitex/{stats/desc/_real.py → stats_v01/desc/_real_v01-20250920_145731.py} +0 -0
  693. /scitex/{stats → stats_v01}/multiple/__init__.py +0 -0
  694. /scitex/{stats → stats_v01}/multiple/_bonferroni_correction.py +0 -0
  695. /scitex/{stats → stats_v01}/multiple/_fdr_correction.py +0 -0
  696. /scitex/{stats → stats_v01}/multiple/_multicompair.py +0 -0
  697. /scitex/{stats → stats_v01}/tests/__corr_test.py +0 -0
  698. /scitex/{stats → stats_v01}/tests/__corr_test_multi.py +0 -0
  699. /scitex/{stats → stats_v01}/tests/__corr_test_single.py +0 -0
  700. /scitex/{stats → stats_v01}/tests/__init__.py +0 -0
  701. /scitex/{stats → stats_v01}/tests/_brunner_munzel_test.py +0 -0
  702. /scitex/{stats → stats_v01}/tests/_nocorrelation_test.py +0 -0
  703. /scitex/{stats → stats_v01}/tests/_smirnov_grubbs.py +0 -0
  704. {scitex-2.0.0.dist-info → scitex-2.1.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,705 @@
1
+ #!/usr/bin/env python3
2
+ # -*- coding: utf-8 -*-
3
+ # Timestamp: "2025-10-18 09:55:52 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex-code/src/scitex/capture/utils.py
5
+ # ----------------------------------------
6
+ from __future__ import annotations
7
+ import os
8
+ __FILE__ = (
9
+ "./src/scitex/capture/utils.py"
10
+ )
11
+ __DIR__ = os.path.dirname(__FILE__)
12
+ # ----------------------------------------
13
+
14
+ import sys
15
+
16
+ """
17
+ Utility functions for easy screen capture.
18
+ """
19
+
20
+ from datetime import datetime
21
+ from pathlib import Path
22
+ from typing import Optional
23
+
24
+ from .capture import CaptureManager, ScreenshotWorker
25
+
26
+ # Global manager instance
27
+ _manager = CaptureManager()
28
+
29
+
30
+ def _manage_cache_size(cache_dir: Path, max_size_gb: float = 1.0):
31
+ """
32
+ Manage cache directory size by removing old files if size exceeds limit.
33
+
34
+ Parameters
35
+ ----------
36
+ cache_dir : Path
37
+ Directory to manage
38
+ max_size_gb : float
39
+ Maximum size in GB (default: 1.0)
40
+ """
41
+ if not cache_dir.exists():
42
+ return
43
+
44
+ max_size_bytes = max_size_gb * 1024 * 1024 * 1024 # Convert GB to bytes
45
+
46
+ # Get all files with their sizes and modification times
47
+ files = []
48
+ total_size = 0
49
+
50
+ for file_path in cache_dir.glob("*.jpg"):
51
+ if file_path.is_file():
52
+ size = file_path.stat().st_size
53
+ mtime = file_path.stat().st_mtime
54
+ files.append((file_path, size, mtime))
55
+ total_size += size
56
+
57
+ # Also check PNG files
58
+ for file_path in cache_dir.glob("*.png"):
59
+ if file_path.is_file():
60
+ size = file_path.stat().st_size
61
+ mtime = file_path.stat().st_mtime
62
+ files.append((file_path, size, mtime))
63
+ total_size += size
64
+
65
+ # If under limit, nothing to do
66
+ if total_size <= max_size_bytes:
67
+ return
68
+
69
+ # Sort by modification time (oldest first)
70
+ files.sort(key=lambda x: x[2])
71
+
72
+ # Remove oldest files until under limit
73
+ for file_path, size, _ in files:
74
+ if total_size <= max_size_bytes:
75
+ break
76
+ try:
77
+ file_path.unlink()
78
+ total_size -= size
79
+ except:
80
+ pass # File might be in use
81
+
82
+
83
+ def capture(
84
+ message: str = None,
85
+ path: str = None,
86
+ quality: int = 85,
87
+ auto_categorize: bool = True,
88
+ verbose: bool = True,
89
+ monitor_id: int = 0,
90
+ capture_all: bool = False,
91
+ all: bool = False,
92
+ app: str = None,
93
+ url: str = None,
94
+ url_wait: int = 3,
95
+ url_width: int = 1920,
96
+ url_height: int = 1080,
97
+ max_cache_gb: float = 1.0,
98
+ ) -> str:
99
+ """
100
+ Take a screenshot - monitor, window, browser, or everything.
101
+
102
+ Parameters
103
+ ----------
104
+ message : str, optional
105
+ Message to include in filename
106
+ path : str, optional
107
+ Output path (default: ~/.scitex/capture/)
108
+ quality : int
109
+ JPEG quality (1-100)
110
+ all : bool
111
+ Capture all monitors
112
+ app : str, optional
113
+ App name to capture (e.g., "chrome", "code")
114
+ url : str, optional
115
+ URL to capture via browser (e.g., "http://127.0.0.1:8000/")
116
+ url_wait : int
117
+ Seconds to wait for page load (default: 3)
118
+ url_width : int
119
+ Browser window width for URL capture (default: 1920)
120
+ url_height : int
121
+ Browser window height for URL capture (default: 1080)
122
+ monitor_id : int
123
+ Monitor to capture (0-based, default: 0)
124
+
125
+ Returns
126
+ -------
127
+ str
128
+ Path to saved screenshot
129
+
130
+ Examples
131
+ --------
132
+ >>> from scitex import capture
133
+ >>>
134
+ >>> capture.snap() # Current monitor
135
+ >>> capture.snap(all=True) # All monitors
136
+ >>> capture.snap(app="chrome") # Chrome window
137
+ >>> capture.snap(url="http://localhost:8000") # Browser page
138
+ """
139
+ # Handle URL capture
140
+ if url:
141
+ # Auto-add http:// if no protocol specified
142
+ if not url.startswith(("http://", "https://", "file://")):
143
+ url = f"http://{url}"
144
+
145
+ # Try Playwright first (headless, non-interfering)
146
+ try:
147
+ from playwright.sync_api import sync_playwright
148
+
149
+ if path is None:
150
+ timestamp_str = datetime.now().strftime("%Y%m%d_%H%M%S")
151
+ url_slug = (
152
+ url.replace("://", "_")
153
+ .replace("/", "_")
154
+ .replace(":", "_")[:30]
155
+ )
156
+ path = f"~/.scitex/capture/{timestamp_str}-url-{url_slug}.jpg"
157
+
158
+ path = os.path.expanduser(path)
159
+
160
+ if verbose:
161
+ print(f"📸 Capturing URL: {url}")
162
+
163
+ # Check if DISPLAY is set (WSL with X11 forward causes visible browser)
164
+ import os as _os
165
+
166
+ original_display = _os.environ.get("DISPLAY")
167
+
168
+ # Force headless by unsetting DISPLAY temporarily
169
+ if original_display:
170
+ _os.environ.pop("DISPLAY", None)
171
+
172
+ try:
173
+ with sync_playwright() as p:
174
+ # Use stealth args from scitex.browser
175
+ stealth_args = [
176
+ "--no-sandbox",
177
+ "--disable-dev-shm-usage",
178
+ "--disable-blink-features=AutomationControlled",
179
+ "--window-size=1920,1080",
180
+ ]
181
+ browser = p.chromium.launch(
182
+ headless=True, args=stealth_args
183
+ )
184
+ context = browser.new_context(
185
+ viewport={"width": url_width, "height": url_height}
186
+ )
187
+ page = context.new_page()
188
+ # Use domcontentloaded for faster capture, with longer timeout
189
+ page.goto(
190
+ url, wait_until="domcontentloaded", timeout=30000
191
+ )
192
+ # Wait additional time for rendering
193
+ page.wait_for_timeout(url_wait * 1000)
194
+ page.screenshot(
195
+ path=path,
196
+ type="jpeg",
197
+ quality=quality,
198
+ full_page=False,
199
+ )
200
+ browser.close()
201
+ finally:
202
+ # Restore DISPLAY
203
+ if original_display:
204
+ _os.environ["DISPLAY"] = original_display
205
+
206
+ if Path(path).exists():
207
+ if verbose:
208
+ print(f"📸 URL: {path}")
209
+ return path
210
+
211
+ except ImportError:
212
+ if verbose:
213
+ print(
214
+ "⚠️ Playwright not installed: pip install 'scitex[capture-browser]'"
215
+ )
216
+ pass # Try PowerShell fallback
217
+ except Exception as e:
218
+ if verbose:
219
+ print(f"⚠️ Playwright failed: {e}")
220
+ pass # Try PowerShell fallback
221
+
222
+ # For WSL: Fallback to Windows-side browser
223
+ if (
224
+ sys.platform == "linux"
225
+ and "microsoft" in os.uname().release.lower()
226
+ ):
227
+ try:
228
+ import base64
229
+ import json
230
+ import subprocess
231
+
232
+ # Generate output path
233
+ if path is None:
234
+ timestamp_str = datetime.now().strftime("%Y%m%d_%H%M%S")
235
+ url_slug = (
236
+ url.replace("://", "_")
237
+ .replace("/", "_")
238
+ .replace(":", "_")[:30]
239
+ )
240
+ path = f"~/.scitex/capture/{timestamp_str}-url-{url_slug}.jpg"
241
+
242
+ path = os.path.expanduser(path)
243
+
244
+ if verbose:
245
+ print(f"📸 Capturing URL on Windows: {url}")
246
+
247
+ # Use PowerShell script on Windows host
248
+ script_dir = Path(__file__).parent / "powershell"
249
+ script_path = script_dir / "capture_url.ps1"
250
+
251
+ if script_path.exists():
252
+ # Find PowerShell
253
+ ps_paths = [
254
+ "powershell.exe",
255
+ "/mnt/c/Windows/System32/WindowsPowerShell/v1.0/powershell.exe",
256
+ ]
257
+ ps_exe = None
258
+ for p in ps_paths:
259
+ try:
260
+ result = subprocess.run(
261
+ [p, "-Command", "echo test"],
262
+ capture_output=True,
263
+ timeout=1,
264
+ )
265
+ if result.returncode == 0:
266
+ ps_exe = p
267
+ break
268
+ except:
269
+ continue
270
+
271
+ if ps_exe:
272
+ cmd = [
273
+ ps_exe,
274
+ "-NoProfile",
275
+ "-ExecutionPolicy",
276
+ "Bypass",
277
+ "-File",
278
+ str(script_path),
279
+ "-Url",
280
+ url,
281
+ "-WaitSeconds",
282
+ str(url_wait),
283
+ "-WindowWidth",
284
+ str(url_width),
285
+ "-WindowHeight",
286
+ str(url_height),
287
+ ]
288
+
289
+ result = subprocess.run(
290
+ cmd, capture_output=True, text=True, timeout=30
291
+ )
292
+
293
+ if result.returncode == 0 and result.stdout.strip():
294
+ # Parse JSON
295
+ lines = result.stdout.strip().split("\n")
296
+ for line in lines:
297
+ if line.strip().startswith("{"):
298
+ data = json.loads(line)
299
+ if data.get("Success"):
300
+ img_data = base64.b64decode(
301
+ data.get("Base64Data", "")
302
+ )
303
+
304
+ # Save as JPEG
305
+ try:
306
+ import io
307
+
308
+ from PIL import Image
309
+
310
+ img = Image.open(
311
+ io.BytesIO(img_data)
312
+ )
313
+ if img.mode == "RGBA":
314
+ rgb_img = Image.new(
315
+ "RGB",
316
+ img.size,
317
+ (255, 255, 255),
318
+ )
319
+ rgb_img.paste(
320
+ img, mask=img.split()[3]
321
+ )
322
+ img = rgb_img
323
+ img.save(
324
+ path,
325
+ "JPEG",
326
+ quality=quality,
327
+ optimize=True,
328
+ )
329
+
330
+ if verbose:
331
+ print(f"📸 URL: {path}")
332
+ return path
333
+ except ImportError:
334
+ # Save as PNG fallback
335
+ with open(
336
+ path.replace(".jpg", ".png"),
337
+ "wb",
338
+ ) as f:
339
+ f.write(img_data)
340
+ return path.replace(".jpg", ".png")
341
+ break
342
+
343
+ except Exception as e:
344
+ if verbose:
345
+ print(f"⚠️ PowerShell URL capture failed: {e}")
346
+
347
+ # If all methods failed
348
+ if verbose:
349
+ print(
350
+ "❌ URL capture failed - Playwright not available and PowerShell failed"
351
+ )
352
+ return None
353
+
354
+ # Handle app-specific capture
355
+ if app:
356
+ info = _manager.get_info()
357
+ windows = info.get("Windows", {}).get("Details", [])
358
+
359
+ # Search for matching window
360
+ app_lower = app.lower()
361
+ matching_window = None
362
+
363
+ for win in windows:
364
+ process_name = win.get("ProcessName", "").lower()
365
+ title = win.get("Title", "").lower()
366
+
367
+ if app_lower in process_name or app_lower in title:
368
+ matching_window = win
369
+ break
370
+
371
+ if matching_window:
372
+ handle = matching_window.get("Handle")
373
+ result_path = _manager.capture_window(handle, path)
374
+
375
+ if result_path and verbose:
376
+ print(
377
+ f"📸 {matching_window.get('ProcessName')}: {result_path}"
378
+ )
379
+
380
+ return result_path
381
+ else:
382
+ if verbose:
383
+ print(f"❌ App '{app}' not found in visible windows")
384
+ return None
385
+
386
+ # Handle 'all' shorthand
387
+ if all:
388
+ capture_all = True
389
+
390
+ # Take screenshot first to analyze it
391
+ timestamp = datetime.now().strftime("%Y%m%d_%H%M%S_%f")[:-3]
392
+ temp_dir = "/tmp/scitex_capture_temp"
393
+ Path(temp_dir).mkdir(exist_ok=True)
394
+
395
+ # Take screenshot to temp location
396
+ use_jpeg = (
397
+ True
398
+ if path is None or path.lower().endswith((".jpg", ".jpeg"))
399
+ else False
400
+ )
401
+ worker = ScreenshotWorker(
402
+ output_dir=temp_dir,
403
+ use_jpeg=use_jpeg,
404
+ jpeg_quality=quality,
405
+ verbose=verbose, # Use the verbose parameter passed by user
406
+ )
407
+
408
+ worker.session_id = "capture"
409
+ worker.screenshot_count = 0
410
+ worker.monitor = monitor_id
411
+ worker.capture_all = capture_all
412
+ temp_path = worker._take_screenshot()
413
+
414
+ if not temp_path:
415
+ return None
416
+
417
+ # Detect category if auto_categorize enabled
418
+ category = "stdout"
419
+ if auto_categorize:
420
+ # First check if we're in an exception context
421
+ if _is_in_exception_context():
422
+ category = "stderr"
423
+ # Add exception info to message
424
+ import traceback
425
+
426
+ exc_info = traceback.format_exc(limit=3)
427
+ if message:
428
+ message = f"{message}\n{exc_info}"
429
+ else:
430
+ message = exc_info
431
+ else:
432
+ # Try visual detection
433
+ category = _detect_category(temp_path)
434
+
435
+ # Build monitor/scope tag for filename
436
+ scope_tag = ""
437
+ if capture_all:
438
+ scope_tag = "-all-monitors"
439
+ elif monitor_id > 0:
440
+ scope_tag = f"-monitor{monitor_id}"
441
+ # monitor_id=0 (primary) gets no tag for cleaner default names
442
+
443
+ # Normalize message for filename
444
+ normalized_msg = ""
445
+ if message:
446
+ # Remove special chars, keep only alphanumeric and spaces
447
+ import re
448
+
449
+ normalized = re.sub(
450
+ r"[^\w\s-]", "", message.split("\n")[0]
451
+ ) # First line only
452
+ normalized = re.sub(r"[-\s]+", "-", normalized).strip("-")
453
+ normalized_msg = (
454
+ f"-{normalized[:50]}" if normalized else ""
455
+ ) # Limit length
456
+
457
+ # Add category suffix
458
+ category_suffix = f"-{category}"
459
+
460
+ # Handle path with category and message
461
+ if path is None:
462
+ # Include monitor/scope info in filename
463
+ path = (
464
+ f"~/.scitex/capture/<timestamp><scope><message><category_suffix>.jpg"
465
+ )
466
+
467
+ # Expand user home
468
+ path = os.path.expanduser(path)
469
+
470
+ # Replace placeholders
471
+ if "<timestamp>" in path:
472
+ path = path.replace("<timestamp>", timestamp)
473
+ if "<scope>" in path:
474
+ path = path.replace("<scope>", scope_tag)
475
+ if "<message>" in path:
476
+ path = path.replace("<message>", normalized_msg)
477
+ if "<category_suffix>" in path:
478
+ path = path.replace("<category_suffix>", category_suffix)
479
+
480
+ # Ensure directory exists
481
+ output_dir = Path(path).parent
482
+ output_dir.mkdir(parents=True, exist_ok=True)
483
+
484
+ # Move to final location
485
+ final_path = Path(path)
486
+ Path(temp_path).rename(final_path)
487
+
488
+ # Add message with category as metadata
489
+ if message or category != "stdout":
490
+ metadata = (
491
+ f"[{category.upper()}] {message}"
492
+ if message
493
+ else f"[{category.upper()}]"
494
+ )
495
+ _add_message_metadata(str(final_path), metadata)
496
+
497
+ # Manage cache size (remove old files if needed)
498
+ cache_dir = Path(os.path.expanduser("~/.scitex/capture"))
499
+ if cache_dir.exists():
500
+ _manage_cache_size(cache_dir, max_cache_gb)
501
+
502
+ # Print path for user feedback (useful in interactive sessions)
503
+ final_path_str = str(final_path)
504
+ if verbose:
505
+ try:
506
+ if category == "stderr":
507
+ print(f"📸 stderr: {final_path_str}")
508
+ else:
509
+ print(f"📸 stdout: {final_path_str}")
510
+ except:
511
+ # In case print fails in some environments
512
+ pass
513
+
514
+ return final_path_str
515
+
516
+
517
+ def take_screenshot(
518
+ output_path: str = None, jpeg: bool = True, quality: int = 85
519
+ ) -> Optional[str]:
520
+ """
521
+ Take a single screenshot (simple interface).
522
+
523
+ Parameters
524
+ ----------
525
+ output_path : str, optional
526
+ Where to save the screenshot
527
+ jpeg : bool
528
+ Use JPEG format (True) or PNG (False)
529
+ quality : int
530
+ JPEG quality (1-100)
531
+
532
+ Returns
533
+ -------
534
+ str or None
535
+ Path to saved screenshot
536
+ """
537
+ return _manager.take_single_screenshot(output_path, jpeg, quality)
538
+
539
+
540
+ def start_monitor(
541
+ output_dir: str = "~/.scitex/capture/",
542
+ interval: float = 1.0,
543
+ jpeg: bool = True,
544
+ quality: int = 60,
545
+ on_capture=None,
546
+ on_error=None,
547
+ verbose: bool = True,
548
+ monitor_id: int = 0,
549
+ capture_all: bool = False,
550
+ ) -> ScreenshotWorker:
551
+ """
552
+ Start continuous screenshot monitoring.
553
+
554
+ Parameters
555
+ ----------
556
+ output_dir : str
557
+ Directory for screenshots (default: ~/.scitex/capture/)
558
+ interval : float
559
+ Seconds between captures
560
+ jpeg : bool
561
+ Use JPEG compression
562
+ quality : int
563
+ JPEG quality (1-100)
564
+ on_capture : callable, optional
565
+ Function called with filepath after each capture
566
+ on_error : callable, optional
567
+ Function called with exception on errors
568
+ verbose : bool
569
+ Print status messages
570
+ monitor_id : int
571
+ Monitor number to capture (0-based index, default: 0 for primary monitor)
572
+ capture_all : bool
573
+ If True, capture all monitors combined (default: False)
574
+
575
+ Returns
576
+ -------
577
+ ScreenshotWorker
578
+ The worker instance
579
+
580
+ Examples
581
+ --------
582
+ >>> # Simple monitoring
583
+ >>> capture.start()
584
+
585
+ >>> # With event hooks
586
+ >>> capture.start(
587
+ ... on_capture=lambda path: print(f"Saved: {path}"),
588
+ ... on_error=lambda e: logging.error(e)
589
+ ... )
590
+
591
+ >>> # Detect specific screen content
592
+ >>> def check_error_dialog(path):
593
+ ... if "error" in analyze_image(path):
594
+ ... send_alert(f"Error detected: {path}")
595
+ >>> capture.start(on_capture=check_error_dialog)
596
+ """
597
+ # Expand user home directory
598
+ output_dir = os.path.expanduser(output_dir)
599
+
600
+ return _manager.start_capture(
601
+ output_dir=output_dir,
602
+ interval=interval,
603
+ jpeg=jpeg,
604
+ quality=quality,
605
+ on_capture=on_capture,
606
+ on_error=on_error,
607
+ verbose=verbose,
608
+ monitor_id=monitor_id,
609
+ capture_all=capture_all,
610
+ )
611
+
612
+
613
+ def stop_monitor():
614
+ """Stop continuous screenshot monitoring."""
615
+ _manager.stop_capture()
616
+
617
+
618
+ def _is_in_exception_context() -> bool:
619
+ """
620
+ Check if we're currently in an exception handler.
621
+ """
622
+ import sys
623
+
624
+ # Check if there's an active exception
625
+ exc_info = sys.exc_info()
626
+ return exc_info[0] is not None
627
+
628
+
629
+ def _detect_category(filepath: str) -> str:
630
+ """
631
+ Detect screenshot category based on content.
632
+ Simple heuristic based on common error indicators.
633
+ """
634
+ try:
635
+ # Try OCR-based detection if available
636
+ from PIL import Image
637
+
638
+ img = Image.open(filepath)
639
+
640
+ # Simple color-based heuristics
641
+ # Red dominant = likely error
642
+ # Yellow/orange dominant = likely warning
643
+ pixels = img.convert("RGB").getdata()
644
+ red_count = sum(
645
+ 1 for r, g, b in pixels if r > 200 and g < 100 and b < 100
646
+ )
647
+ yellow_count = sum(
648
+ 1 for r, g, b in pixels if r > 200 and g > 150 and b < 100
649
+ )
650
+
651
+ total_pixels = len(pixels)
652
+ red_ratio = red_count / total_pixels if total_pixels > 0 else 0
653
+ yellow_ratio = yellow_count / total_pixels if total_pixels > 0 else 0
654
+
655
+ # Thresholds for detection
656
+ if red_ratio > 0.05: # More than 5% red pixels
657
+ return "error"
658
+ elif yellow_ratio > 0.05: # More than 5% yellow pixels
659
+ return "warning"
660
+
661
+ except:
662
+ pass
663
+
664
+ # Check filename for common error keywords
665
+ filename_lower = str(filepath).lower()
666
+ if any(
667
+ word in filename_lower
668
+ for word in ["error", "fail", "exception", "crash"]
669
+ ):
670
+ return "stderr"
671
+ elif any(word in filename_lower for word in ["warn", "alert", "caution"]):
672
+ return "stderr" # Warnings also go to stderr
673
+
674
+ return "stdout"
675
+
676
+
677
+ def _add_message_metadata(filepath: str, message: str):
678
+ """Add message as metadata to image file."""
679
+ try:
680
+ # Try to add EXIF comment using PIL
681
+ from PIL import Image
682
+
683
+ img = Image.open(filepath)
684
+
685
+ # Add comment to image metadata
686
+ exif = img.getexif()
687
+ exif[0x9286] = message # UserComment EXIF tag
688
+
689
+ # Save with metadata
690
+ img.save(filepath, exif=exif)
691
+ except:
692
+ # If PIL not available, create companion text file
693
+ text_path = Path(filepath).with_suffix(".txt")
694
+ text_path.write_text(f"{datetime.now().isoformat()}: {message}\n")
695
+
696
+
697
+ # Convenience exports
698
+ __all__ = [
699
+ "capture",
700
+ "take_screenshot",
701
+ "start_monitor",
702
+ "stop_monitor",
703
+ ]
704
+
705
+ # EOF