scipy 1.16.2__cp311-cp311-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp311-win_arm64.lib +0 -0
- scipy/_cyutility.cp311-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp311-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp311-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp311-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp311-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp311-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp311-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp311-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp311-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp311-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp311-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp311-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp311-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp311-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp311-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp311-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp311-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp311-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
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- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp311-win_arm64.lib +0 -0
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- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
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- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
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- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp311-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp311-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp311-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp311-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp311-win_arm64.lib +0 -0
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- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp311-win_arm64.lib +0 -0
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- scipy/integrate/_quadpack_py.py +1283 -0
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- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp311-win_arm64.lib +0 -0
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- scipy/integrate/tests/test_cubature.py +1375 -0
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- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
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- scipy/interpolate/_cubic.py +973 -0
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- scipy/stats/_distribution_infrastructure.py +5750 -0
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- scipy/stats/_finite_differences.py +145 -0
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- scipy/stats/_kde.py +732 -0
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- scipy/stats/_levy_stable/__init__.py +1231 -0
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- scipy/stats/_mannwhitneyu.py +492 -0
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- scipy/stats/_morestats.py +4626 -0
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- scipy/stats/_mstats_extras.py +521 -0
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- scipy/stats/_qmc.py +2956 -0
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- scipy/stats/_qmc_cy.pyi +54 -0
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- scipy/stats/_quantile.py +335 -0
- scipy/stats/_rcont/__init__.py +4 -0
- scipy/stats/_rcont/rcont.cp311-win_arm64.lib +0 -0
- scipy/stats/_rcont/rcont.cp311-win_arm64.pyd +0 -0
- scipy/stats/_relative_risk.py +263 -0
- scipy/stats/_resampling.py +2352 -0
- scipy/stats/_result_classes.py +40 -0
- scipy/stats/_sampling.py +1314 -0
- scipy/stats/_sensitivity_analysis.py +713 -0
- scipy/stats/_sobol.cp311-win_arm64.lib +0 -0
- scipy/stats/_sobol.cp311-win_arm64.pyd +0 -0
- scipy/stats/_sobol.pyi +54 -0
- scipy/stats/_sobol_direction_numbers.npz +0 -0
- scipy/stats/_stats.cp311-win_arm64.lib +0 -0
- scipy/stats/_stats.cp311-win_arm64.pyd +0 -0
- scipy/stats/_stats.pxd +10 -0
- scipy/stats/_stats_mstats_common.py +322 -0
- scipy/stats/_stats_py.py +11089 -0
- scipy/stats/_stats_pythran.cp311-win_arm64.lib +0 -0
- scipy/stats/_stats_pythran.cp311-win_arm64.pyd +0 -0
- scipy/stats/_survival.py +683 -0
- scipy/stats/_tukeylambda_stats.py +199 -0
- scipy/stats/_unuran/__init__.py +0 -0
- scipy/stats/_unuran/unuran_wrapper.cp311-win_arm64.lib +0 -0
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- scipy/stats/_unuran/unuran_wrapper.pyi +179 -0
- scipy/stats/_variation.py +126 -0
- scipy/stats/_warnings_errors.py +38 -0
- scipy/stats/_wilcoxon.py +265 -0
- scipy/stats/biasedurn.py +16 -0
- scipy/stats/contingency.py +521 -0
- scipy/stats/distributions.py +24 -0
- scipy/stats/kde.py +18 -0
- scipy/stats/morestats.py +27 -0
- scipy/stats/mstats.py +140 -0
- scipy/stats/mstats_basic.py +42 -0
- scipy/stats/mstats_extras.py +25 -0
- scipy/stats/mvn.py +17 -0
- scipy/stats/qmc.py +236 -0
- scipy/stats/sampling.py +73 -0
- scipy/stats/stats.py +41 -0
- scipy/stats/tests/__init__.py +0 -0
- scipy/stats/tests/common_tests.py +356 -0
- scipy/stats/tests/data/_mvt.py +171 -0
- scipy/stats/tests/data/fisher_exact_results_from_r.py +607 -0
- scipy/stats/tests/data/jf_skew_t_gamlss_pdf_data.npy +0 -0
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- scipy/stats/tests/data/levy_stable/stable-loc-scale-sample-data.npy +0 -0
- scipy/stats/tests/data/nist_anova/AtmWtAg.dat +108 -0
- scipy/stats/tests/data/nist_anova/SiRstv.dat +85 -0
- scipy/stats/tests/data/nist_anova/SmLs01.dat +249 -0
- scipy/stats/tests/data/nist_anova/SmLs02.dat +1869 -0
- scipy/stats/tests/data/nist_anova/SmLs03.dat +18069 -0
- scipy/stats/tests/data/nist_anova/SmLs04.dat +249 -0
- scipy/stats/tests/data/nist_anova/SmLs05.dat +1869 -0
- scipy/stats/tests/data/nist_anova/SmLs06.dat +18069 -0
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- scipy/stats/tests/data/nist_anova/SmLs09.dat +18069 -0
- scipy/stats/tests/data/nist_linregress/Norris.dat +97 -0
- scipy/stats/tests/data/rel_breitwigner_pdf_sample_data_ROOT.npy +0 -0
- scipy/stats/tests/data/studentized_range_mpmath_ref.json +1499 -0
- scipy/stats/tests/test_axis_nan_policy.py +1388 -0
- scipy/stats/tests/test_binned_statistic.py +568 -0
- scipy/stats/tests/test_censored_data.py +152 -0
- scipy/stats/tests/test_contingency.py +294 -0
- scipy/stats/tests/test_continued_fraction.py +173 -0
- scipy/stats/tests/test_continuous.py +2198 -0
- scipy/stats/tests/test_continuous_basic.py +1053 -0
- scipy/stats/tests/test_continuous_fit_censored.py +683 -0
- scipy/stats/tests/test_correlation.py +80 -0
- scipy/stats/tests/test_crosstab.py +115 -0
- scipy/stats/tests/test_discrete_basic.py +580 -0
- scipy/stats/tests/test_discrete_distns.py +700 -0
- scipy/stats/tests/test_distributions.py +10413 -0
- scipy/stats/tests/test_entropy.py +322 -0
- scipy/stats/tests/test_fast_gen_inversion.py +435 -0
- scipy/stats/tests/test_fit.py +1090 -0
- scipy/stats/tests/test_hypotests.py +1991 -0
- scipy/stats/tests/test_kdeoth.py +676 -0
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- scipy/stats/tests/test_morestats.py +3259 -0
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- scipy/stats/tests/test_mstats_extras.py +172 -0
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- scipy/stats/tests/test_multivariate.py +4381 -0
- scipy/stats/tests/test_odds_ratio.py +148 -0
- scipy/stats/tests/test_qmc.py +1492 -0
- scipy/stats/tests/test_quantile.py +199 -0
- scipy/stats/tests/test_rank.py +345 -0
- scipy/stats/tests/test_relative_risk.py +95 -0
- scipy/stats/tests/test_resampling.py +2000 -0
- scipy/stats/tests/test_sampling.py +1450 -0
- scipy/stats/tests/test_sensitivity_analysis.py +310 -0
- scipy/stats/tests/test_stats.py +9707 -0
- scipy/stats/tests/test_survival.py +466 -0
- scipy/stats/tests/test_tukeylambda_stats.py +85 -0
- scipy/stats/tests/test_variation.py +216 -0
- scipy/version.py +12 -0
- scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
- scipy-1.16.2.dist-info/LICENSE.txt +912 -0
- scipy-1.16.2.dist-info/METADATA +1061 -0
- scipy-1.16.2.dist-info/RECORD +1530 -0
- scipy-1.16.2.dist-info/WHEEL +4 -0
- scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
- scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
scipy/_lib/_util.py
ADDED
@@ -0,0 +1,1283 @@
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import re
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2
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from contextlib import contextmanager
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3
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import functools
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import operator
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import warnings
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6
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import numbers
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7
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from collections import namedtuple
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import inspect
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import math
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from types import ModuleType
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from typing import Literal, TypeAlias, TypeVar
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import numpy as np
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14
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from scipy._lib._array_api import (Array, array_namespace, is_lazy_array,
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is_numpy, is_marray, xp_result_device,
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xp_size, xp_result_type)
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from scipy._lib._docscrape import FunctionDoc, Parameter
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from scipy._lib._sparse import issparse
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from numpy.exceptions import AxisError
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np_long: type
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np_ulong: type
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if np.lib.NumpyVersion(np.__version__) >= "2.0.0.dev0":
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try:
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with warnings.catch_warnings():
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warnings.filterwarnings(
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"ignore",
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r".*In the future `np\.long` will be defined as.*",
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FutureWarning,
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)
|
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np_long = np.long # type: ignore[attr-defined]
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np_ulong = np.ulong # type: ignore[attr-defined]
|
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except AttributeError:
|
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np_long = np.int_
|
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np_ulong = np.uint
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else:
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np_long = np.int_
|
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np_ulong = np.uint
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IntNumber = int | np.integer
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DecimalNumber = float | np.floating | np.integer
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copy_if_needed: bool | None
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if np.lib.NumpyVersion(np.__version__) >= "2.0.0":
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copy_if_needed = None
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elif np.lib.NumpyVersion(np.__version__) < "1.28.0":
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copy_if_needed = False
|
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else:
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# 2.0.0 dev versions, handle cases where copy may or may not exist
|
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try:
|
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np.array([1]).__array__(copy=None) # type: ignore[call-overload]
|
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copy_if_needed = None
|
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except TypeError:
|
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copy_if_needed = False
|
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|
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|
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_RNG: TypeAlias = np.random.Generator | np.random.RandomState
|
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SeedType: TypeAlias = IntNumber | _RNG | None
|
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+
|
64
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GeneratorType = TypeVar("GeneratorType", bound=_RNG)
|
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|
66
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# Since Generator was introduced in numpy 1.17, the following condition is needed for
|
67
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# backward compatibility
|
68
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try:
|
69
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from numpy.random import Generator as Generator
|
70
|
+
except ImportError:
|
71
|
+
class Generator: # type: ignore[no-redef]
|
72
|
+
pass
|
73
|
+
|
74
|
+
|
75
|
+
def _lazyselect(condlist, choicelist, arrays, default=0):
|
76
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+
"""
|
77
|
+
Mimic `np.select(condlist, choicelist)`.
|
78
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+
|
79
|
+
Notice, it assumes that all `arrays` are of the same shape or can be
|
80
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+
broadcasted together.
|
81
|
+
|
82
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+
All functions in `choicelist` must accept array arguments in the order
|
83
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+
given in `arrays` and must return an array of the same shape as broadcasted
|
84
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+
`arrays`.
|
85
|
+
|
86
|
+
Examples
|
87
|
+
--------
|
88
|
+
>>> import numpy as np
|
89
|
+
>>> x = np.arange(6)
|
90
|
+
>>> np.select([x <3, x > 3], [x**2, x**3], default=0)
|
91
|
+
array([ 0, 1, 4, 0, 64, 125])
|
92
|
+
|
93
|
+
>>> _lazyselect([x < 3, x > 3], [lambda x: x**2, lambda x: x**3], (x,))
|
94
|
+
array([ 0., 1., 4., 0., 64., 125.])
|
95
|
+
|
96
|
+
>>> a = -np.ones_like(x)
|
97
|
+
>>> _lazyselect([x < 3, x > 3],
|
98
|
+
... [lambda x, a: x**2, lambda x, a: a * x**3],
|
99
|
+
... (x, a), default=np.nan)
|
100
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+
array([ 0., 1., 4., nan, -64., -125.])
|
101
|
+
|
102
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+
"""
|
103
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+
arrays = np.broadcast_arrays(*arrays)
|
104
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+
tcode = np.mintypecode([a.dtype.char for a in arrays])
|
105
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+
out = np.full(np.shape(arrays[0]), fill_value=default, dtype=tcode)
|
106
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for func, cond in zip(choicelist, condlist):
|
107
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if np.all(cond is False):
|
108
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+
continue
|
109
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+
cond, _ = np.broadcast_arrays(cond, arrays[0])
|
110
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+
temp = tuple(np.extract(cond, arr) for arr in arrays)
|
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np.place(out, cond, func(*temp))
|
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return out
|
113
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|
114
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|
115
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def _aligned_zeros(shape, dtype=float, order="C", align=None):
|
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"""Allocate a new ndarray with aligned memory.
|
117
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+
|
118
|
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Primary use case for this currently is working around a f2py issue
|
119
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in NumPy 1.9.1, where dtype.alignment is such that np.zeros() does
|
120
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+
not necessarily create arrays aligned up to it.
|
121
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+
|
122
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+
"""
|
123
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dtype = np.dtype(dtype)
|
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if align is None:
|
125
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align = dtype.alignment
|
126
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if not hasattr(shape, '__len__'):
|
127
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+
shape = (shape,)
|
128
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size = functools.reduce(operator.mul, shape) * dtype.itemsize
|
129
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+
buf = np.empty(size + align + 1, np.uint8)
|
130
|
+
offset = buf.__array_interface__['data'][0] % align
|
131
|
+
if offset != 0:
|
132
|
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offset = align - offset
|
133
|
+
# Note: slices producing 0-size arrays do not necessarily change
|
134
|
+
# data pointer --- so we use and allocate size+1
|
135
|
+
buf = buf[offset:offset+size+1][:-1]
|
136
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+
data = np.ndarray(shape, dtype, buf, order=order)
|
137
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+
data.fill(0)
|
138
|
+
return data
|
139
|
+
|
140
|
+
|
141
|
+
def _prune_array(array):
|
142
|
+
"""Return an array equivalent to the input array. If the input
|
143
|
+
array is a view of a much larger array, copy its contents to a
|
144
|
+
newly allocated array. Otherwise, return the input unchanged.
|
145
|
+
"""
|
146
|
+
if array.base is not None and array.size < array.base.size // 2:
|
147
|
+
return array.copy()
|
148
|
+
return array
|
149
|
+
|
150
|
+
|
151
|
+
def float_factorial(n: int) -> float:
|
152
|
+
"""Compute the factorial and return as a float
|
153
|
+
|
154
|
+
Returns infinity when result is too large for a double
|
155
|
+
"""
|
156
|
+
return float(math.factorial(n)) if n < 171 else np.inf
|
157
|
+
|
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_rng_desc = (
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r"""If `rng` is passed by keyword, types other than `numpy.random.Generator` are
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passed to `numpy.random.default_rng` to instantiate a ``Generator``.
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If `rng` is already a ``Generator`` instance, then the provided instance is
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used. Specify `rng` for repeatable function behavior.
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If this argument is passed by position or `{old_name}` is passed by keyword,
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legacy behavior for the argument `{old_name}` applies:
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- If `{old_name}` is None (or `numpy.random`), the `numpy.random.RandomState`
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singleton is used.
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- If `{old_name}` is an int, a new ``RandomState`` instance is used,
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seeded with `{old_name}`.
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- If `{old_name}` is already a ``Generator`` or ``RandomState`` instance then
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that instance is used.
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.. versionchanged:: 1.15.0
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As part of the `SPEC-007 <https://scientific-python.org/specs/spec-0007/>`_
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transition from use of `numpy.random.RandomState` to
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`numpy.random.Generator`, this keyword was changed from `{old_name}` to `rng`.
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For an interim period, both keywords will continue to work, although only one
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may be specified at a time. After the interim period, function calls using the
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`{old_name}` keyword will emit warnings. The behavior of both `{old_name}` and
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`rng` are outlined above, but only the `rng` keyword should be used in new code.
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"""
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)
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# SPEC 7
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def _transition_to_rng(old_name, *, position_num=None, end_version=None,
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replace_doc=True):
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"""Example decorator to transition from old PRNG usage to new `rng` behavior
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Suppose the decorator is applied to a function that used to accept parameter
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`old_name='random_state'` either by keyword or as a positional argument at
|
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`position_num=1`. At the time of application, the name of the argument in the
|
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function signature is manually changed to the new name, `rng`. If positional
|
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use was allowed before, this is not changed.*
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- If the function is called with both `random_state` and `rng`, the decorator
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raises an error.
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- If `random_state` is provided as a keyword argument, the decorator passes
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`random_state` to the function's `rng` argument as a keyword. If `end_version`
|
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+
is specified, the decorator will emit a `DeprecationWarning` about the
|
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deprecation of keyword `random_state`.
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- If `random_state` is provided as a positional argument, the decorator passes
|
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`random_state` to the function's `rng` argument by position. If `end_version`
|
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is specified, the decorator will emit a `FutureWarning` about the changing
|
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interpretation of the argument.
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- If `rng` is provided as a keyword argument, the decorator validates `rng` using
|
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`numpy.random.default_rng` before passing it to the function.
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- If `end_version` is specified and neither `random_state` nor `rng` is provided
|
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by the user, the decorator checks whether `np.random.seed` has been used to set
|
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the global seed. If so, it emits a `FutureWarning`, noting that usage of
|
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`numpy.random.seed` will eventually have no effect. Either way, the decorator
|
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calls the function without explicitly passing the `rng` argument.
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+
|
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If `end_version` is specified, a user must pass `rng` as a keyword to avoid
|
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warnings.
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+
|
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After the deprecation period, the decorator can be removed, and the function
|
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can simply validate the `rng` argument by calling `np.random.default_rng(rng)`.
|
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+
|
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* A `FutureWarning` is emitted when the PRNG argument is used by
|
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position. It indicates that the "Hinsen principle" (same
|
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code yielding different results in two versions of the software)
|
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+
will be violated, unless positional use is deprecated. Specifically:
|
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+
|
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- If `None` is passed by position and `np.random.seed` has been used,
|
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the function will change from being seeded to being unseeded.
|
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+
- If an integer is passed by position, the random stream will change.
|
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- If `np.random` or an instance of `RandomState` is passed by position,
|
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an error will be raised.
|
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+
|
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We suggest that projects consider deprecating positional use of
|
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`random_state`/`rng` (i.e., change their function signatures to
|
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+
``def my_func(..., *, rng=None)``); that might not make sense
|
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+
for all projects, so this SPEC does not make that
|
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+
recommendation, neither does this decorator enforce it.
|
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+
|
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|
+
Parameters
|
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|
+
----------
|
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|
+
old_name : str
|
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|
+
The old name of the PRNG argument (e.g. `seed` or `random_state`).
|
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|
+
position_num : int, optional
|
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|
+
The (0-indexed) position of the old PRNG argument (if accepted by position).
|
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|
+
Maintainers are welcome to eliminate this argument and use, for example,
|
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|
+
`inspect`, if preferred.
|
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|
+
end_version : str, optional
|
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|
+
The full version number of the library when the behavior described in
|
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|
+
`DeprecationWarning`s and `FutureWarning`s will take effect. If left
|
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|
+
unspecified, no warnings will be emitted by the decorator.
|
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|
+
replace_doc : bool, default: True
|
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|
+
Whether the decorator should replace the documentation for parameter `rng` with
|
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|
+
`_rng_desc` (defined above), which documents both new `rng` keyword behavior
|
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|
+
and typical legacy `random_state`/`seed` behavior. If True, manually replace
|
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|
+
the first paragraph of the function's old `random_state`/`seed` documentation
|
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|
+
with the desired *final* `rng` documentation; this way, no changes to
|
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|
+
documentation are needed when the decorator is removed. Documentation of `rng`
|
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|
+
after the first blank line is preserved. Use False if the function's old
|
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|
+
`random_state`/`seed` behavior does not match that described by `_rng_desc`.
|
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|
+
|
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|
+
"""
|
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|
+
NEW_NAME = "rng"
|
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+
|
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|
+
cmn_msg = (
|
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|
+
"To silence this warning and ensure consistent behavior in SciPy "
|
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|
+
f"{end_version}, control the RNG using argument `{NEW_NAME}`. Arguments passed "
|
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|
+
f"to keyword `{NEW_NAME}` will be validated by `np.random.default_rng`, so the "
|
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|
+
"behavior corresponding with a given value may change compared to use of "
|
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+
f"`{old_name}`. For example, "
|
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|
+
"1) `None` will result in unpredictable random numbers, "
|
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|
+
"2) an integer will result in a different stream of random numbers, (with the "
|
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|
+
"same distribution), and "
|
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|
+
"3) `np.random` or `RandomState` instances will result in an error. "
|
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|
+
"See the documentation of `default_rng` for more information."
|
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|
+
)
|
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|
+
|
277
|
+
def decorator(fun):
|
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|
+
@functools.wraps(fun)
|
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|
+
def wrapper(*args, **kwargs):
|
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|
+
# Determine how PRNG was passed
|
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|
+
as_old_kwarg = old_name in kwargs
|
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|
+
as_new_kwarg = NEW_NAME in kwargs
|
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|
+
as_pos_arg = position_num is not None and len(args) >= position_num + 1
|
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|
+
emit_warning = end_version is not None
|
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|
+
|
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|
+
# Can only specify PRNG one of the three ways
|
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|
+
if int(as_old_kwarg) + int(as_new_kwarg) + int(as_pos_arg) > 1:
|
288
|
+
message = (
|
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|
+
f"{fun.__name__}() got multiple values for "
|
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|
+
f"argument now known as `{NEW_NAME}`. Specify one of "
|
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|
+
f"`{NEW_NAME}` or `{old_name}`."
|
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|
+
)
|
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|
+
raise TypeError(message)
|
294
|
+
|
295
|
+
# Check whether global random state has been set
|
296
|
+
global_seed_set = np.random.mtrand._rand._bit_generator._seed_seq is None
|
297
|
+
|
298
|
+
if as_old_kwarg: # warn about deprecated use of old kwarg
|
299
|
+
kwargs[NEW_NAME] = kwargs.pop(old_name)
|
300
|
+
if emit_warning:
|
301
|
+
message = (
|
302
|
+
f"Use of keyword argument `{old_name}` is "
|
303
|
+
f"deprecated and replaced by `{NEW_NAME}`. "
|
304
|
+
f"Support for `{old_name}` will be removed "
|
305
|
+
f"in SciPy {end_version}. "
|
306
|
+
) + cmn_msg
|
307
|
+
warnings.warn(message, DeprecationWarning, stacklevel=2)
|
308
|
+
|
309
|
+
elif as_pos_arg:
|
310
|
+
# Warn about changing meaning of positional arg
|
311
|
+
|
312
|
+
# Note that this decorator does not deprecate positional use of the
|
313
|
+
# argument; it only warns that the behavior will change in the future.
|
314
|
+
# Simultaneously transitioning to keyword-only use is another option.
|
315
|
+
|
316
|
+
arg = args[position_num]
|
317
|
+
# If the argument is None and the global seed wasn't set, or if the
|
318
|
+
# argument is one of a few new classes, the user will not notice change
|
319
|
+
# in behavior.
|
320
|
+
ok_classes = (
|
321
|
+
np.random.Generator,
|
322
|
+
np.random.SeedSequence,
|
323
|
+
np.random.BitGenerator,
|
324
|
+
)
|
325
|
+
if (arg is None and not global_seed_set) or isinstance(arg, ok_classes):
|
326
|
+
pass
|
327
|
+
elif emit_warning:
|
328
|
+
message = (
|
329
|
+
f"Positional use of `{NEW_NAME}` (formerly known as "
|
330
|
+
f"`{old_name}`) is still allowed, but the behavior is "
|
331
|
+
"changing: the argument will be normalized using "
|
332
|
+
f"`np.random.default_rng` beginning in SciPy {end_version}, "
|
333
|
+
"and the resulting `Generator` will be used to generate "
|
334
|
+
"random numbers."
|
335
|
+
) + cmn_msg
|
336
|
+
warnings.warn(message, FutureWarning, stacklevel=2)
|
337
|
+
|
338
|
+
elif as_new_kwarg: # no warnings; this is the preferred use
|
339
|
+
# After the removal of the decorator, normalization with
|
340
|
+
# np.random.default_rng will be done inside the decorated function
|
341
|
+
kwargs[NEW_NAME] = np.random.default_rng(kwargs[NEW_NAME])
|
342
|
+
|
343
|
+
elif global_seed_set and emit_warning:
|
344
|
+
# Emit FutureWarning if `np.random.seed` was used and no PRNG was passed
|
345
|
+
message = (
|
346
|
+
"The NumPy global RNG was seeded by calling "
|
347
|
+
f"`np.random.seed`. Beginning in {end_version}, this "
|
348
|
+
"function will no longer use the global RNG."
|
349
|
+
) + cmn_msg
|
350
|
+
warnings.warn(message, FutureWarning, stacklevel=2)
|
351
|
+
|
352
|
+
return fun(*args, **kwargs)
|
353
|
+
|
354
|
+
# Add the old parameter name to the function signature
|
355
|
+
wrapped_signature = inspect.signature(fun)
|
356
|
+
wrapper.__signature__ = wrapped_signature.replace(parameters=[
|
357
|
+
*wrapped_signature.parameters.values(),
|
358
|
+
inspect.Parameter(old_name, inspect.Parameter.KEYWORD_ONLY, default=None),
|
359
|
+
])
|
360
|
+
|
361
|
+
if replace_doc:
|
362
|
+
doc = FunctionDoc(wrapper)
|
363
|
+
parameter_names = [param.name for param in doc['Parameters']]
|
364
|
+
if 'rng' in parameter_names:
|
365
|
+
_type = "{None, int, `numpy.random.Generator`}, optional"
|
366
|
+
_desc = _rng_desc.replace("{old_name}", old_name)
|
367
|
+
old_doc = doc['Parameters'][parameter_names.index('rng')].desc
|
368
|
+
old_doc_keep = old_doc[old_doc.index("") + 1:] if "" in old_doc else []
|
369
|
+
new_doc = [_desc] + old_doc_keep
|
370
|
+
_rng_parameter_doc = Parameter('rng', _type, new_doc)
|
371
|
+
doc['Parameters'][parameter_names.index('rng')] = _rng_parameter_doc
|
372
|
+
doc = str(doc).split("\n", 1)[1] # remove signature
|
373
|
+
wrapper.__doc__ = str(doc)
|
374
|
+
return wrapper
|
375
|
+
|
376
|
+
return decorator
|
377
|
+
|
378
|
+
|
379
|
+
# copy-pasted from scikit-learn utils/validation.py
|
380
|
+
def check_random_state(seed):
|
381
|
+
"""Turn `seed` into a `np.random.RandomState` instance.
|
382
|
+
|
383
|
+
Parameters
|
384
|
+
----------
|
385
|
+
seed : {None, int, `numpy.random.Generator`, `numpy.random.RandomState`}, optional
|
386
|
+
If `seed` is None (or `np.random`), the `numpy.random.RandomState`
|
387
|
+
singleton is used.
|
388
|
+
If `seed` is an int, a new ``RandomState`` instance is used,
|
389
|
+
seeded with `seed`.
|
390
|
+
If `seed` is already a ``Generator`` or ``RandomState`` instance then
|
391
|
+
that instance is used.
|
392
|
+
|
393
|
+
Returns
|
394
|
+
-------
|
395
|
+
seed : {`numpy.random.Generator`, `numpy.random.RandomState`}
|
396
|
+
Random number generator.
|
397
|
+
|
398
|
+
"""
|
399
|
+
if seed is None or seed is np.random:
|
400
|
+
return np.random.mtrand._rand
|
401
|
+
if isinstance(seed, numbers.Integral | np.integer):
|
402
|
+
return np.random.RandomState(seed)
|
403
|
+
if isinstance(seed, np.random.RandomState | np.random.Generator):
|
404
|
+
return seed
|
405
|
+
|
406
|
+
raise ValueError(f"'{seed}' cannot be used to seed a numpy.random.RandomState"
|
407
|
+
" instance")
|
408
|
+
|
409
|
+
|
410
|
+
def _asarray_validated(a, check_finite=True,
|
411
|
+
sparse_ok=False, objects_ok=False, mask_ok=False,
|
412
|
+
as_inexact=False):
|
413
|
+
"""
|
414
|
+
Helper function for SciPy argument validation.
|
415
|
+
|
416
|
+
Many SciPy linear algebra functions do support arbitrary array-like
|
417
|
+
input arguments. Examples of commonly unsupported inputs include
|
418
|
+
matrices containing inf/nan, sparse matrix representations, and
|
419
|
+
matrices with complicated elements.
|
420
|
+
|
421
|
+
Parameters
|
422
|
+
----------
|
423
|
+
a : array_like
|
424
|
+
The array-like input.
|
425
|
+
check_finite : bool, optional
|
426
|
+
Whether to check that the input matrices contain only finite numbers.
|
427
|
+
Disabling may give a performance gain, but may result in problems
|
428
|
+
(crashes, non-termination) if the inputs do contain infinities or NaNs.
|
429
|
+
Default: True
|
430
|
+
sparse_ok : bool, optional
|
431
|
+
True if scipy sparse matrices are allowed.
|
432
|
+
objects_ok : bool, optional
|
433
|
+
True if arrays with dype('O') are allowed.
|
434
|
+
mask_ok : bool, optional
|
435
|
+
True if masked arrays are allowed.
|
436
|
+
as_inexact : bool, optional
|
437
|
+
True to convert the input array to a np.inexact dtype.
|
438
|
+
|
439
|
+
Returns
|
440
|
+
-------
|
441
|
+
ret : ndarray
|
442
|
+
The converted validated array.
|
443
|
+
|
444
|
+
"""
|
445
|
+
if not sparse_ok:
|
446
|
+
if issparse(a):
|
447
|
+
msg = ('Sparse arrays/matrices are not supported by this function. '
|
448
|
+
'Perhaps one of the `scipy.sparse.linalg` functions '
|
449
|
+
'would work instead.')
|
450
|
+
raise ValueError(msg)
|
451
|
+
if not mask_ok:
|
452
|
+
if np.ma.isMaskedArray(a):
|
453
|
+
raise ValueError('masked arrays are not supported')
|
454
|
+
toarray = np.asarray_chkfinite if check_finite else np.asarray
|
455
|
+
a = toarray(a)
|
456
|
+
if not objects_ok:
|
457
|
+
if a.dtype is np.dtype('O'):
|
458
|
+
raise ValueError('object arrays are not supported')
|
459
|
+
if as_inexact:
|
460
|
+
if not np.issubdtype(a.dtype, np.inexact):
|
461
|
+
a = toarray(a, dtype=np.float64)
|
462
|
+
return a
|
463
|
+
|
464
|
+
|
465
|
+
def _validate_int(k, name, minimum=None):
|
466
|
+
"""
|
467
|
+
Validate a scalar integer.
|
468
|
+
|
469
|
+
This function can be used to validate an argument to a function
|
470
|
+
that expects the value to be an integer. It uses `operator.index`
|
471
|
+
to validate the value (so, for example, k=2.0 results in a
|
472
|
+
TypeError).
|
473
|
+
|
474
|
+
Parameters
|
475
|
+
----------
|
476
|
+
k : int
|
477
|
+
The value to be validated.
|
478
|
+
name : str
|
479
|
+
The name of the parameter.
|
480
|
+
minimum : int, optional
|
481
|
+
An optional lower bound.
|
482
|
+
"""
|
483
|
+
try:
|
484
|
+
k = operator.index(k)
|
485
|
+
except TypeError:
|
486
|
+
raise TypeError(f'{name} must be an integer.') from None
|
487
|
+
if minimum is not None and k < minimum:
|
488
|
+
raise ValueError(f'{name} must be an integer not less '
|
489
|
+
f'than {minimum}') from None
|
490
|
+
return k
|
491
|
+
|
492
|
+
|
493
|
+
# Add a replacement for inspect.getfullargspec()/
|
494
|
+
# The version below is borrowed from Django,
|
495
|
+
# https://github.com/django/django/pull/4846.
|
496
|
+
|
497
|
+
# Note an inconsistency between inspect.getfullargspec(func) and
|
498
|
+
# inspect.signature(func). If `func` is a bound method, the latter does *not*
|
499
|
+
# list `self` as a first argument, while the former *does*.
|
500
|
+
# Hence, cook up a common ground replacement: `getfullargspec_no_self` which
|
501
|
+
# mimics `inspect.getfullargspec` but does not list `self`.
|
502
|
+
#
|
503
|
+
# This way, the caller code does not need to know whether it uses a legacy
|
504
|
+
# .getfullargspec or a bright and shiny .signature.
|
505
|
+
|
506
|
+
FullArgSpec = namedtuple('FullArgSpec',
|
507
|
+
['args', 'varargs', 'varkw', 'defaults',
|
508
|
+
'kwonlyargs', 'kwonlydefaults', 'annotations'])
|
509
|
+
|
510
|
+
|
511
|
+
def getfullargspec_no_self(func):
|
512
|
+
"""inspect.getfullargspec replacement using inspect.signature.
|
513
|
+
|
514
|
+
If func is a bound method, do not list the 'self' parameter.
|
515
|
+
|
516
|
+
Parameters
|
517
|
+
----------
|
518
|
+
func : callable
|
519
|
+
A callable to inspect
|
520
|
+
|
521
|
+
Returns
|
522
|
+
-------
|
523
|
+
fullargspec : FullArgSpec(args, varargs, varkw, defaults, kwonlyargs,
|
524
|
+
kwonlydefaults, annotations)
|
525
|
+
|
526
|
+
NOTE: if the first argument of `func` is self, it is *not*, I repeat
|
527
|
+
*not*, included in fullargspec.args.
|
528
|
+
This is done for consistency between inspect.getargspec() under
|
529
|
+
Python 2.x, and inspect.signature() under Python 3.x.
|
530
|
+
|
531
|
+
"""
|
532
|
+
sig = inspect.signature(func)
|
533
|
+
args = [
|
534
|
+
p.name for p in sig.parameters.values()
|
535
|
+
if p.kind in [inspect.Parameter.POSITIONAL_OR_KEYWORD,
|
536
|
+
inspect.Parameter.POSITIONAL_ONLY]
|
537
|
+
]
|
538
|
+
varargs = [
|
539
|
+
p.name for p in sig.parameters.values()
|
540
|
+
if p.kind == inspect.Parameter.VAR_POSITIONAL
|
541
|
+
]
|
542
|
+
varargs = varargs[0] if varargs else None
|
543
|
+
varkw = [
|
544
|
+
p.name for p in sig.parameters.values()
|
545
|
+
if p.kind == inspect.Parameter.VAR_KEYWORD
|
546
|
+
]
|
547
|
+
varkw = varkw[0] if varkw else None
|
548
|
+
defaults = tuple(
|
549
|
+
p.default for p in sig.parameters.values()
|
550
|
+
if (p.kind == inspect.Parameter.POSITIONAL_OR_KEYWORD and
|
551
|
+
p.default is not p.empty)
|
552
|
+
) or None
|
553
|
+
kwonlyargs = [
|
554
|
+
p.name for p in sig.parameters.values()
|
555
|
+
if p.kind == inspect.Parameter.KEYWORD_ONLY
|
556
|
+
]
|
557
|
+
kwdefaults = {p.name: p.default for p in sig.parameters.values()
|
558
|
+
if p.kind == inspect.Parameter.KEYWORD_ONLY and
|
559
|
+
p.default is not p.empty}
|
560
|
+
annotations = {p.name: p.annotation for p in sig.parameters.values()
|
561
|
+
if p.annotation is not p.empty}
|
562
|
+
return FullArgSpec(args, varargs, varkw, defaults, kwonlyargs,
|
563
|
+
kwdefaults or None, annotations)
|
564
|
+
|
565
|
+
|
566
|
+
class _FunctionWrapper:
|
567
|
+
"""
|
568
|
+
Object to wrap user's function, allowing picklability
|
569
|
+
"""
|
570
|
+
def __init__(self, f, args):
|
571
|
+
self.f = f
|
572
|
+
self.args = [] if args is None else args
|
573
|
+
|
574
|
+
def __call__(self, x):
|
575
|
+
return self.f(x, *self.args)
|
576
|
+
|
577
|
+
|
578
|
+
class _ScalarFunctionWrapper:
|
579
|
+
"""
|
580
|
+
Object to wrap scalar user function, allowing picklability
|
581
|
+
"""
|
582
|
+
def __init__(self, f, args=None):
|
583
|
+
self.f = f
|
584
|
+
self.args = [] if args is None else args
|
585
|
+
self.nfev = 0
|
586
|
+
|
587
|
+
def __call__(self, x):
|
588
|
+
# Send a copy because the user may overwrite it.
|
589
|
+
# The user of this class might want `x` to remain unchanged.
|
590
|
+
fx = self.f(np.copy(x), *self.args)
|
591
|
+
self.nfev += 1
|
592
|
+
|
593
|
+
# Make sure the function returns a true scalar
|
594
|
+
if not np.isscalar(fx):
|
595
|
+
try:
|
596
|
+
fx = np.asarray(fx).item()
|
597
|
+
except (TypeError, ValueError) as e:
|
598
|
+
raise ValueError(
|
599
|
+
"The user-provided objective function "
|
600
|
+
"must return a scalar value."
|
601
|
+
) from e
|
602
|
+
return fx
|
603
|
+
|
604
|
+
class MapWrapper:
|
605
|
+
"""
|
606
|
+
Parallelisation wrapper for working with map-like callables, such as
|
607
|
+
`multiprocessing.Pool.map`.
|
608
|
+
|
609
|
+
Parameters
|
610
|
+
----------
|
611
|
+
pool : int or map-like callable
|
612
|
+
If `pool` is an integer, then it specifies the number of threads to
|
613
|
+
use for parallelization. If ``int(pool) == 1``, then no parallel
|
614
|
+
processing is used and the map builtin is used.
|
615
|
+
If ``pool == -1``, then the pool will utilize all available CPUs.
|
616
|
+
If `pool` is a map-like callable that follows the same
|
617
|
+
calling sequence as the built-in map function, then this callable is
|
618
|
+
used for parallelization.
|
619
|
+
"""
|
620
|
+
def __init__(self, pool=1):
|
621
|
+
self.pool = None
|
622
|
+
self._mapfunc = map
|
623
|
+
self._own_pool = False
|
624
|
+
|
625
|
+
if callable(pool):
|
626
|
+
self.pool = pool
|
627
|
+
self._mapfunc = self.pool
|
628
|
+
else:
|
629
|
+
from multiprocessing import Pool
|
630
|
+
# user supplies a number
|
631
|
+
if int(pool) == -1:
|
632
|
+
# use as many processors as possible
|
633
|
+
self.pool = Pool()
|
634
|
+
self._mapfunc = self.pool.map
|
635
|
+
self._own_pool = True
|
636
|
+
elif int(pool) == 1:
|
637
|
+
pass
|
638
|
+
elif int(pool) > 1:
|
639
|
+
# use the number of processors requested
|
640
|
+
self.pool = Pool(processes=int(pool))
|
641
|
+
self._mapfunc = self.pool.map
|
642
|
+
self._own_pool = True
|
643
|
+
else:
|
644
|
+
raise RuntimeError("Number of workers specified must be -1,"
|
645
|
+
" an int >= 1, or an object with a 'map' "
|
646
|
+
"method")
|
647
|
+
|
648
|
+
def __enter__(self):
|
649
|
+
return self
|
650
|
+
|
651
|
+
def terminate(self):
|
652
|
+
if self._own_pool:
|
653
|
+
self.pool.terminate()
|
654
|
+
|
655
|
+
def join(self):
|
656
|
+
if self._own_pool:
|
657
|
+
self.pool.join()
|
658
|
+
|
659
|
+
def close(self):
|
660
|
+
if self._own_pool:
|
661
|
+
self.pool.close()
|
662
|
+
|
663
|
+
def __exit__(self, exc_type, exc_value, traceback):
|
664
|
+
if self._own_pool:
|
665
|
+
self.pool.close()
|
666
|
+
self.pool.terminate()
|
667
|
+
|
668
|
+
def __call__(self, func, iterable):
|
669
|
+
# only accept one iterable because that's all Pool.map accepts
|
670
|
+
try:
|
671
|
+
return self._mapfunc(func, iterable)
|
672
|
+
except TypeError as e:
|
673
|
+
# wrong number of arguments
|
674
|
+
raise TypeError("The map-like callable must be of the"
|
675
|
+
" form f(func, iterable)") from e
|
676
|
+
|
677
|
+
|
678
|
+
def _workers_wrapper(func):
|
679
|
+
"""
|
680
|
+
Wrapper to deal with setup-cleanup of workers outside a user function via a
|
681
|
+
ContextManager. It saves having to do the setup/tear down with within that
|
682
|
+
function, which can be messy.
|
683
|
+
"""
|
684
|
+
@functools.wraps(func)
|
685
|
+
def inner(*args, **kwds):
|
686
|
+
kwargs = kwds.copy()
|
687
|
+
if 'workers' not in kwargs:
|
688
|
+
_workers = map
|
689
|
+
elif 'workers' in kwargs and kwargs['workers'] is None:
|
690
|
+
_workers = map
|
691
|
+
else:
|
692
|
+
_workers = kwargs['workers']
|
693
|
+
|
694
|
+
with MapWrapper(_workers) as mf:
|
695
|
+
kwargs['workers'] = mf
|
696
|
+
return func(*args, **kwargs)
|
697
|
+
|
698
|
+
return inner
|
699
|
+
|
700
|
+
|
701
|
+
def rng_integers(gen, low, high=None, size=None, dtype='int64',
|
702
|
+
endpoint=False):
|
703
|
+
"""
|
704
|
+
Return random integers from low (inclusive) to high (exclusive), or if
|
705
|
+
endpoint=True, low (inclusive) to high (inclusive). Replaces
|
706
|
+
`RandomState.randint` (with endpoint=False) and
|
707
|
+
`RandomState.random_integers` (with endpoint=True).
|
708
|
+
|
709
|
+
Return random integers from the "discrete uniform" distribution of the
|
710
|
+
specified dtype. If high is None (the default), then results are from
|
711
|
+
0 to low.
|
712
|
+
|
713
|
+
Parameters
|
714
|
+
----------
|
715
|
+
gen : {None, np.random.RandomState, np.random.Generator}
|
716
|
+
Random number generator. If None, then the np.random.RandomState
|
717
|
+
singleton is used.
|
718
|
+
low : int or array-like of ints
|
719
|
+
Lowest (signed) integers to be drawn from the distribution (unless
|
720
|
+
high=None, in which case this parameter is 0 and this value is used
|
721
|
+
for high).
|
722
|
+
high : int or array-like of ints
|
723
|
+
If provided, one above the largest (signed) integer to be drawn from
|
724
|
+
the distribution (see above for behavior if high=None). If array-like,
|
725
|
+
must contain integer values.
|
726
|
+
size : array-like of ints, optional
|
727
|
+
Output shape. If the given shape is, e.g., (m, n, k), then m * n * k
|
728
|
+
samples are drawn. Default is None, in which case a single value is
|
729
|
+
returned.
|
730
|
+
dtype : {str, dtype}, optional
|
731
|
+
Desired dtype of the result. All dtypes are determined by their name,
|
732
|
+
i.e., 'int64', 'int', etc, so byteorder is not available and a specific
|
733
|
+
precision may have different C types depending on the platform.
|
734
|
+
The default value is 'int64'.
|
735
|
+
endpoint : bool, optional
|
736
|
+
If True, sample from the interval [low, high] instead of the default
|
737
|
+
[low, high) Defaults to False.
|
738
|
+
|
739
|
+
Returns
|
740
|
+
-------
|
741
|
+
out: int or ndarray of ints
|
742
|
+
size-shaped array of random integers from the appropriate distribution,
|
743
|
+
or a single such random int if size not provided.
|
744
|
+
"""
|
745
|
+
if isinstance(gen, Generator):
|
746
|
+
return gen.integers(low, high=high, size=size, dtype=dtype,
|
747
|
+
endpoint=endpoint)
|
748
|
+
else:
|
749
|
+
if gen is None:
|
750
|
+
# default is RandomState singleton used by np.random.
|
751
|
+
gen = np.random.mtrand._rand
|
752
|
+
if endpoint:
|
753
|
+
# inclusive of endpoint
|
754
|
+
# remember that low and high can be arrays, so don't modify in
|
755
|
+
# place
|
756
|
+
if high is None:
|
757
|
+
return gen.randint(low + 1, size=size, dtype=dtype)
|
758
|
+
if high is not None:
|
759
|
+
return gen.randint(low, high=high + 1, size=size, dtype=dtype)
|
760
|
+
|
761
|
+
# exclusive
|
762
|
+
return gen.randint(low, high=high, size=size, dtype=dtype)
|
763
|
+
|
764
|
+
|
765
|
+
@contextmanager
|
766
|
+
def _fixed_default_rng(seed=1638083107694713882823079058616272161):
|
767
|
+
"""Context with a fixed np.random.default_rng seed."""
|
768
|
+
orig_fun = np.random.default_rng
|
769
|
+
np.random.default_rng = lambda seed=seed: orig_fun(seed)
|
770
|
+
try:
|
771
|
+
yield
|
772
|
+
finally:
|
773
|
+
np.random.default_rng = orig_fun
|
774
|
+
|
775
|
+
|
776
|
+
def _rng_html_rewrite(func):
|
777
|
+
"""Rewrite the HTML rendering of ``np.random.default_rng``.
|
778
|
+
|
779
|
+
This is intended to decorate
|
780
|
+
``numpydoc.docscrape_sphinx.SphinxDocString._str_examples``.
|
781
|
+
|
782
|
+
Examples are only run by Sphinx when there are plot involved. Even so,
|
783
|
+
it does not change the result values getting printed.
|
784
|
+
"""
|
785
|
+
# hexadecimal or number seed, case-insensitive
|
786
|
+
pattern = re.compile(r'np.random.default_rng\((0x[0-9A-F]+|\d+)\)', re.I)
|
787
|
+
|
788
|
+
def _wrapped(*args, **kwargs):
|
789
|
+
res = func(*args, **kwargs)
|
790
|
+
lines = [
|
791
|
+
re.sub(pattern, 'np.random.default_rng()', line)
|
792
|
+
for line in res
|
793
|
+
]
|
794
|
+
return lines
|
795
|
+
|
796
|
+
return _wrapped
|
797
|
+
|
798
|
+
|
799
|
+
def _argmin(a, keepdims=False, axis=None):
|
800
|
+
"""
|
801
|
+
argmin with a `keepdims` parameter.
|
802
|
+
|
803
|
+
See https://github.com/numpy/numpy/issues/8710
|
804
|
+
|
805
|
+
If axis is not None, a.shape[axis] must be greater than 0.
|
806
|
+
"""
|
807
|
+
res = np.argmin(a, axis=axis)
|
808
|
+
if keepdims and axis is not None:
|
809
|
+
res = np.expand_dims(res, axis=axis)
|
810
|
+
return res
|
811
|
+
|
812
|
+
|
813
|
+
def _first_nonnan(a, axis):
|
814
|
+
"""
|
815
|
+
Return the first non-nan value along the given axis.
|
816
|
+
|
817
|
+
If a slice is all nan, nan is returned for that slice.
|
818
|
+
|
819
|
+
The shape of the return value corresponds to ``keepdims=True``.
|
820
|
+
|
821
|
+
Examples
|
822
|
+
--------
|
823
|
+
>>> import numpy as np
|
824
|
+
>>> nan = np.nan
|
825
|
+
>>> a = np.array([[ 3., 3., nan, 3.],
|
826
|
+
[ 1., nan, 2., 4.],
|
827
|
+
[nan, nan, 9., -1.],
|
828
|
+
[nan, 5., 4., 3.],
|
829
|
+
[ 2., 2., 2., 2.],
|
830
|
+
[nan, nan, nan, nan]])
|
831
|
+
>>> _first_nonnan(a, axis=0)
|
832
|
+
array([[3., 3., 2., 3.]])
|
833
|
+
>>> _first_nonnan(a, axis=1)
|
834
|
+
array([[ 3.],
|
835
|
+
[ 1.],
|
836
|
+
[ 9.],
|
837
|
+
[ 5.],
|
838
|
+
[ 2.],
|
839
|
+
[nan]])
|
840
|
+
"""
|
841
|
+
k = _argmin(np.isnan(a), axis=axis, keepdims=True)
|
842
|
+
return np.take_along_axis(a, k, axis=axis)
|
843
|
+
|
844
|
+
|
845
|
+
def _nan_allsame(a, axis, keepdims=False):
|
846
|
+
"""
|
847
|
+
Determine if the values along an axis are all the same.
|
848
|
+
|
849
|
+
nan values are ignored.
|
850
|
+
|
851
|
+
`a` must be a numpy array.
|
852
|
+
|
853
|
+
`axis` is assumed to be normalized; that is, 0 <= axis < a.ndim.
|
854
|
+
|
855
|
+
For an axis of length 0, the result is True. That is, we adopt the
|
856
|
+
convention that ``allsame([])`` is True. (There are no values in the
|
857
|
+
input that are different.)
|
858
|
+
|
859
|
+
`True` is returned for slices that are all nan--not because all the
|
860
|
+
values are the same, but because this is equivalent to ``allsame([])``.
|
861
|
+
|
862
|
+
Examples
|
863
|
+
--------
|
864
|
+
>>> from numpy import nan, array
|
865
|
+
>>> a = array([[ 3., 3., nan, 3.],
|
866
|
+
... [ 1., nan, 2., 4.],
|
867
|
+
... [nan, nan, 9., -1.],
|
868
|
+
... [nan, 5., 4., 3.],
|
869
|
+
... [ 2., 2., 2., 2.],
|
870
|
+
... [nan, nan, nan, nan]])
|
871
|
+
>>> _nan_allsame(a, axis=1, keepdims=True)
|
872
|
+
array([[ True],
|
873
|
+
[False],
|
874
|
+
[False],
|
875
|
+
[False],
|
876
|
+
[ True],
|
877
|
+
[ True]])
|
878
|
+
"""
|
879
|
+
if axis is None:
|
880
|
+
if a.size == 0:
|
881
|
+
return True
|
882
|
+
a = a.ravel()
|
883
|
+
axis = 0
|
884
|
+
else:
|
885
|
+
shp = a.shape
|
886
|
+
if shp[axis] == 0:
|
887
|
+
shp = shp[:axis] + (1,)*keepdims + shp[axis + 1:]
|
888
|
+
return np.full(shp, fill_value=True, dtype=bool)
|
889
|
+
a0 = _first_nonnan(a, axis=axis)
|
890
|
+
return ((a0 == a) | np.isnan(a)).all(axis=axis, keepdims=keepdims)
|
891
|
+
|
892
|
+
|
893
|
+
def _contains_nan(
|
894
|
+
a: Array,
|
895
|
+
nan_policy: Literal["propagate", "raise", "omit"] = "propagate",
|
896
|
+
*,
|
897
|
+
xp_omit_okay: bool = False,
|
898
|
+
xp: ModuleType | None = None,
|
899
|
+
) -> Array | bool:
|
900
|
+
# Regarding `xp_omit_okay`: Temporarily, while `_axis_nan_policy` does not
|
901
|
+
# handle non-NumPy arrays, most functions that call `_contains_nan` want
|
902
|
+
# it to raise an error if `nan_policy='omit'` and `xp` is not `np`.
|
903
|
+
# Some functions support `nan_policy='omit'` natively, so setting this to
|
904
|
+
# `True` prevents the error from being raised.
|
905
|
+
policies = {"propagate", "raise", "omit"}
|
906
|
+
if nan_policy not in policies:
|
907
|
+
msg = f"nan_policy must be one of {policies}."
|
908
|
+
raise ValueError(msg)
|
909
|
+
|
910
|
+
if xp_size(a) == 0:
|
911
|
+
return False
|
912
|
+
|
913
|
+
if xp is None:
|
914
|
+
xp = array_namespace(a)
|
915
|
+
|
916
|
+
if xp.isdtype(a.dtype, "real floating"):
|
917
|
+
# Faster and less memory-intensive than xp.any(xp.isnan(a)), and unlike other
|
918
|
+
# reductions, `max`/`min` won't return NaN unless there is a NaN in the data.
|
919
|
+
contains_nan = xp.isnan(xp.max(a))
|
920
|
+
elif xp.isdtype(a.dtype, "complex floating"):
|
921
|
+
# Typically `real` and `imag` produce views; otherwise, `xp.any(xp.isnan(a))`
|
922
|
+
# would be more efficient.
|
923
|
+
contains_nan = xp.isnan(xp.max(xp.real(a))) | xp.isnan(xp.max(xp.imag(a)))
|
924
|
+
elif is_numpy(xp) and np.issubdtype(a.dtype, object):
|
925
|
+
contains_nan = False
|
926
|
+
for el in a.ravel():
|
927
|
+
# isnan doesn't work on non-numeric elements
|
928
|
+
if np.issubdtype(type(el), np.number) and np.isnan(el):
|
929
|
+
contains_nan = True
|
930
|
+
break
|
931
|
+
else:
|
932
|
+
# Only `object` and `inexact` arrays can have NaNs
|
933
|
+
return False
|
934
|
+
|
935
|
+
# The implicit call to bool(contains_nan) must happen after testing
|
936
|
+
# nan_policy to prevent lazy and device-bound xps from raising in the
|
937
|
+
# default policy='propagate' case.
|
938
|
+
if nan_policy == 'raise':
|
939
|
+
if is_lazy_array(a):
|
940
|
+
msg = "nan_policy='raise' is not supported for lazy arrays."
|
941
|
+
raise TypeError(msg)
|
942
|
+
if contains_nan:
|
943
|
+
msg = "The input contains nan values"
|
944
|
+
raise ValueError(msg)
|
945
|
+
elif nan_policy == 'omit' and not xp_omit_okay and not is_numpy(xp):
|
946
|
+
if is_lazy_array(a):
|
947
|
+
msg = "nan_policy='omit' is not supported for lazy arrays."
|
948
|
+
raise TypeError(msg)
|
949
|
+
if contains_nan:
|
950
|
+
msg = "nan_policy='omit' is incompatible with non-NumPy arrays."
|
951
|
+
raise ValueError(msg)
|
952
|
+
|
953
|
+
return contains_nan
|
954
|
+
|
955
|
+
|
956
|
+
def _rename_parameter(old_name, new_name, dep_version=None):
|
957
|
+
"""
|
958
|
+
Generate decorator for backward-compatible keyword renaming.
|
959
|
+
|
960
|
+
Apply the decorator generated by `_rename_parameter` to functions with a
|
961
|
+
recently renamed parameter to maintain backward-compatibility.
|
962
|
+
|
963
|
+
After decoration, the function behaves as follows:
|
964
|
+
If only the new parameter is passed into the function, behave as usual.
|
965
|
+
If only the old parameter is passed into the function (as a keyword), raise
|
966
|
+
a DeprecationWarning if `dep_version` is provided, and behave as usual
|
967
|
+
otherwise.
|
968
|
+
If both old and new parameters are passed into the function, raise a
|
969
|
+
DeprecationWarning if `dep_version` is provided, and raise the appropriate
|
970
|
+
TypeError (function got multiple values for argument).
|
971
|
+
|
972
|
+
Parameters
|
973
|
+
----------
|
974
|
+
old_name : str
|
975
|
+
Old name of parameter
|
976
|
+
new_name : str
|
977
|
+
New name of parameter
|
978
|
+
dep_version : str, optional
|
979
|
+
Version of SciPy in which old parameter was deprecated in the format
|
980
|
+
'X.Y.Z'. If supplied, the deprecation message will indicate that
|
981
|
+
support for the old parameter will be removed in version 'X.Y+2.Z'
|
982
|
+
|
983
|
+
Notes
|
984
|
+
-----
|
985
|
+
Untested with functions that accept *args. Probably won't work as written.
|
986
|
+
|
987
|
+
"""
|
988
|
+
def decorator(fun):
|
989
|
+
@functools.wraps(fun)
|
990
|
+
def wrapper(*args, **kwargs):
|
991
|
+
if old_name in kwargs:
|
992
|
+
if dep_version:
|
993
|
+
end_version = dep_version.split('.')
|
994
|
+
end_version[1] = str(int(end_version[1]) + 2)
|
995
|
+
end_version = '.'.join(end_version)
|
996
|
+
message = (f"Use of keyword argument `{old_name}` is "
|
997
|
+
f"deprecated and replaced by `{new_name}`. "
|
998
|
+
f"Support for `{old_name}` will be removed "
|
999
|
+
f"in SciPy {end_version}.")
|
1000
|
+
warnings.warn(message, DeprecationWarning, stacklevel=2)
|
1001
|
+
if new_name in kwargs:
|
1002
|
+
message = (f"{fun.__name__}() got multiple values for "
|
1003
|
+
f"argument now known as `{new_name}`")
|
1004
|
+
raise TypeError(message)
|
1005
|
+
kwargs[new_name] = kwargs.pop(old_name)
|
1006
|
+
return fun(*args, **kwargs)
|
1007
|
+
return wrapper
|
1008
|
+
return decorator
|
1009
|
+
|
1010
|
+
|
1011
|
+
def _rng_spawn(rng, n_children):
|
1012
|
+
# spawns independent RNGs from a parent RNG
|
1013
|
+
bg = rng._bit_generator
|
1014
|
+
ss = bg._seed_seq
|
1015
|
+
child_rngs = [np.random.Generator(type(bg)(child_ss))
|
1016
|
+
for child_ss in ss.spawn(n_children)]
|
1017
|
+
return child_rngs
|
1018
|
+
|
1019
|
+
|
1020
|
+
def _get_nan(*data, shape=(), xp=None):
|
1021
|
+
xp = array_namespace(*data) if xp is None else xp
|
1022
|
+
# Get NaN of appropriate dtype for data
|
1023
|
+
dtype = xp_result_type(*data, force_floating=True, xp=xp)
|
1024
|
+
device = xp_result_device(*data)
|
1025
|
+
res = xp.full(shape, xp.nan, dtype=dtype, device=device)
|
1026
|
+
if not shape:
|
1027
|
+
res = res[()]
|
1028
|
+
# whenever mdhaber/marray#89 is resolved, could just return `res`
|
1029
|
+
return res.data if is_marray(xp) else res
|
1030
|
+
|
1031
|
+
|
1032
|
+
def normalize_axis_index(axis, ndim):
|
1033
|
+
# Check if `axis` is in the correct range and normalize it
|
1034
|
+
if axis < -ndim or axis >= ndim:
|
1035
|
+
msg = f"axis {axis} is out of bounds for array of dimension {ndim}"
|
1036
|
+
raise AxisError(msg)
|
1037
|
+
|
1038
|
+
if axis < 0:
|
1039
|
+
axis = axis + ndim
|
1040
|
+
return axis
|
1041
|
+
|
1042
|
+
|
1043
|
+
def _call_callback_maybe_halt(callback, res):
|
1044
|
+
"""Call wrapped callback; return True if algorithm should stop.
|
1045
|
+
|
1046
|
+
Parameters
|
1047
|
+
----------
|
1048
|
+
callback : callable or None
|
1049
|
+
A user-provided callback wrapped with `_wrap_callback`
|
1050
|
+
res : OptimizeResult
|
1051
|
+
Information about the current iterate
|
1052
|
+
|
1053
|
+
Returns
|
1054
|
+
-------
|
1055
|
+
halt : bool
|
1056
|
+
True if minimization should stop
|
1057
|
+
|
1058
|
+
"""
|
1059
|
+
if callback is None:
|
1060
|
+
return False
|
1061
|
+
try:
|
1062
|
+
callback(res)
|
1063
|
+
return False
|
1064
|
+
except StopIteration:
|
1065
|
+
callback.stop_iteration = True
|
1066
|
+
return True
|
1067
|
+
|
1068
|
+
|
1069
|
+
class _RichResult(dict):
|
1070
|
+
""" Container for multiple outputs with pretty-printing """
|
1071
|
+
def __getattr__(self, name):
|
1072
|
+
try:
|
1073
|
+
return self[name]
|
1074
|
+
except KeyError as e:
|
1075
|
+
raise AttributeError(name) from e
|
1076
|
+
|
1077
|
+
__setattr__ = dict.__setitem__ # type: ignore[assignment]
|
1078
|
+
__delattr__ = dict.__delitem__ # type: ignore[assignment]
|
1079
|
+
|
1080
|
+
def __repr__(self):
|
1081
|
+
order_keys = ['message', 'success', 'status', 'fun', 'funl', 'x', 'xl',
|
1082
|
+
'col_ind', 'nit', 'lower', 'upper', 'eqlin', 'ineqlin',
|
1083
|
+
'converged', 'flag', 'function_calls', 'iterations',
|
1084
|
+
'root']
|
1085
|
+
order_keys = getattr(self, '_order_keys', order_keys)
|
1086
|
+
# 'slack', 'con' are redundant with residuals
|
1087
|
+
# 'crossover_nit' is probably not interesting to most users
|
1088
|
+
omit_keys = {'slack', 'con', 'crossover_nit', '_order_keys'}
|
1089
|
+
|
1090
|
+
def key(item):
|
1091
|
+
try:
|
1092
|
+
return order_keys.index(item[0].lower())
|
1093
|
+
except ValueError: # item not in list
|
1094
|
+
return np.inf
|
1095
|
+
|
1096
|
+
def omit_redundant(items):
|
1097
|
+
for item in items:
|
1098
|
+
if item[0] in omit_keys:
|
1099
|
+
continue
|
1100
|
+
yield item
|
1101
|
+
|
1102
|
+
def item_sorter(d):
|
1103
|
+
return sorted(omit_redundant(d.items()), key=key)
|
1104
|
+
|
1105
|
+
if self.keys():
|
1106
|
+
return _dict_formatter(self, sorter=item_sorter)
|
1107
|
+
else:
|
1108
|
+
return self.__class__.__name__ + "()"
|
1109
|
+
|
1110
|
+
def __dir__(self):
|
1111
|
+
return list(self.keys())
|
1112
|
+
|
1113
|
+
|
1114
|
+
def _indenter(s, n=0):
|
1115
|
+
"""
|
1116
|
+
Ensures that lines after the first are indented by the specified amount
|
1117
|
+
"""
|
1118
|
+
split = s.split("\n")
|
1119
|
+
indent = " "*n
|
1120
|
+
return ("\n" + indent).join(split)
|
1121
|
+
|
1122
|
+
|
1123
|
+
def _float_formatter_10(x):
|
1124
|
+
"""
|
1125
|
+
Returns a string representation of a float with exactly ten characters
|
1126
|
+
"""
|
1127
|
+
if np.isposinf(x):
|
1128
|
+
return " inf"
|
1129
|
+
elif np.isneginf(x):
|
1130
|
+
return " -inf"
|
1131
|
+
elif np.isnan(x):
|
1132
|
+
return " nan"
|
1133
|
+
return np.format_float_scientific(x, precision=3, pad_left=2, unique=False)
|
1134
|
+
|
1135
|
+
|
1136
|
+
def _dict_formatter(d, n=0, mplus=1, sorter=None):
|
1137
|
+
"""
|
1138
|
+
Pretty printer for dictionaries
|
1139
|
+
|
1140
|
+
`n` keeps track of the starting indentation;
|
1141
|
+
lines are indented by this much after a line break.
|
1142
|
+
`mplus` is additional left padding applied to keys
|
1143
|
+
"""
|
1144
|
+
if isinstance(d, dict):
|
1145
|
+
m = max(map(len, list(d.keys()))) + mplus # width to print keys
|
1146
|
+
s = '\n'.join([k.rjust(m) + ': ' + # right justified, width m
|
1147
|
+
_indenter(_dict_formatter(v, m+n+2, 0, sorter), m+2)
|
1148
|
+
for k, v in sorter(d)]) # +2 for ': '
|
1149
|
+
else:
|
1150
|
+
# By default, NumPy arrays print with linewidth=76. `n` is
|
1151
|
+
# the indent at which a line begins printing, so it is subtracted
|
1152
|
+
# from the default to avoid exceeding 76 characters total.
|
1153
|
+
# `edgeitems` is the number of elements to include before and after
|
1154
|
+
# ellipses when arrays are not shown in full.
|
1155
|
+
# `threshold` is the maximum number of elements for which an
|
1156
|
+
# array is shown in full.
|
1157
|
+
# These values tend to work well for use with OptimizeResult.
|
1158
|
+
with np.printoptions(linewidth=76-n, edgeitems=2, threshold=12,
|
1159
|
+
formatter={'float_kind': _float_formatter_10}):
|
1160
|
+
s = str(d)
|
1161
|
+
return s
|
1162
|
+
|
1163
|
+
|
1164
|
+
_batch_note = """
|
1165
|
+
The documentation is written assuming array arguments are of specified
|
1166
|
+
"core" shapes. However, array argument(s) of this function may have additional
|
1167
|
+
"batch" dimensions prepended to the core shape. In this case, the array is treated
|
1168
|
+
as a batch of lower-dimensional slices; see :ref:`linalg_batch` for details.
|
1169
|
+
"""
|
1170
|
+
|
1171
|
+
|
1172
|
+
def _apply_over_batch(*argdefs):
|
1173
|
+
"""
|
1174
|
+
Factory for decorator that applies a function over batched arguments.
|
1175
|
+
|
1176
|
+
Array arguments may have any number of core dimensions (typically 0,
|
1177
|
+
1, or 2) and any broadcastable batch shapes. There may be any
|
1178
|
+
number of array outputs of any number of dimensions. Assumptions
|
1179
|
+
right now - which are satisfied by all functions of interest in `linalg` -
|
1180
|
+
are that all array inputs are consecutive keyword or positional arguments,
|
1181
|
+
and that the wrapped function returns either a single array or a tuple of
|
1182
|
+
arrays. It's only as general as it needs to be right now - it can be extended.
|
1183
|
+
|
1184
|
+
Parameters
|
1185
|
+
----------
|
1186
|
+
*argdefs : tuple of (str, int)
|
1187
|
+
Definitions of array arguments: the keyword name of the argument, and
|
1188
|
+
the number of core dimensions.
|
1189
|
+
|
1190
|
+
Example:
|
1191
|
+
--------
|
1192
|
+
`linalg.eig` accepts two matrices as the first two arguments `a` and `b`, where
|
1193
|
+
`b` is optional, and returns one array or a tuple of arrays, depending on the
|
1194
|
+
values of other positional or keyword arguments. To generate a wrapper that applies
|
1195
|
+
the function over batches of `a` and optionally `b` :
|
1196
|
+
|
1197
|
+
>>> _apply_over_batch(('a', 2), ('b', 2))
|
1198
|
+
"""
|
1199
|
+
names, ndims = list(zip(*argdefs))
|
1200
|
+
n_arrays = len(names)
|
1201
|
+
|
1202
|
+
def decorator(f):
|
1203
|
+
@functools.wraps(f)
|
1204
|
+
def wrapper(*args, **kwargs):
|
1205
|
+
args = list(args)
|
1206
|
+
|
1207
|
+
# Ensure all arrays in `arrays`, other arguments in `other_args`/`kwargs`
|
1208
|
+
arrays, other_args = args[:n_arrays], args[n_arrays:]
|
1209
|
+
for i, name in enumerate(names):
|
1210
|
+
if name in kwargs:
|
1211
|
+
if i + 1 <= len(args):
|
1212
|
+
raise ValueError(f'{f.__name__}() got multiple values '
|
1213
|
+
f'for argument `{name}`.')
|
1214
|
+
else:
|
1215
|
+
arrays.append(kwargs.pop(name))
|
1216
|
+
|
1217
|
+
# Determine core and batch shapes
|
1218
|
+
batch_shapes = []
|
1219
|
+
core_shapes = []
|
1220
|
+
for i, (array, ndim) in enumerate(zip(arrays, ndims)):
|
1221
|
+
array = None if array is None else np.asarray(array)
|
1222
|
+
shape = () if array is None else array.shape
|
1223
|
+
|
1224
|
+
if ndim == "1|2": # special case for `solve`, etc.
|
1225
|
+
ndim = 2 if array.ndim >= 2 else 1
|
1226
|
+
|
1227
|
+
arrays[i] = array
|
1228
|
+
batch_shapes.append(shape[:-ndim] if ndim > 0 else shape)
|
1229
|
+
core_shapes.append(shape[-ndim:] if ndim > 0 else ())
|
1230
|
+
|
1231
|
+
# Early exit if call is not batched
|
1232
|
+
if not any(batch_shapes):
|
1233
|
+
return f(*arrays, *other_args, **kwargs)
|
1234
|
+
|
1235
|
+
# Determine broadcasted batch shape
|
1236
|
+
batch_shape = np.broadcast_shapes(*batch_shapes) # Gives OK error message
|
1237
|
+
|
1238
|
+
# Broadcast arrays to appropriate shape
|
1239
|
+
for i, (array, core_shape) in enumerate(zip(arrays, core_shapes)):
|
1240
|
+
if array is None:
|
1241
|
+
continue
|
1242
|
+
arrays[i] = np.broadcast_to(array, batch_shape + core_shape)
|
1243
|
+
|
1244
|
+
# Main loop
|
1245
|
+
results = []
|
1246
|
+
for index in np.ndindex(batch_shape):
|
1247
|
+
result = f(*(array[index] for array in arrays), *other_args, **kwargs)
|
1248
|
+
# Assume `result` is either a tuple or single array. This is easily
|
1249
|
+
# generalized by allowing the contributor to pass an `unpack_result`
|
1250
|
+
# callable to the decorator factory.
|
1251
|
+
result = (result,) if not isinstance(result, tuple) else result
|
1252
|
+
results.append(result)
|
1253
|
+
results = list(zip(*results))
|
1254
|
+
|
1255
|
+
# Reshape results
|
1256
|
+
for i, result in enumerate(results):
|
1257
|
+
result = np.stack(result)
|
1258
|
+
core_shape = result.shape[1:]
|
1259
|
+
results[i] = np.reshape(result, batch_shape + core_shape)
|
1260
|
+
|
1261
|
+
# Assume `result` should be a single array if there is only one element or
|
1262
|
+
# a `tuple` otherwise. This is easily generalized by allowing the
|
1263
|
+
# contributor to pass an `pack_result` callable to the decorator factory.
|
1264
|
+
return results[0] if len(results) == 1 else results
|
1265
|
+
|
1266
|
+
doc = FunctionDoc(wrapper)
|
1267
|
+
doc['Extended Summary'].append(_batch_note.rstrip())
|
1268
|
+
wrapper.__doc__ = str(doc).split("\n", 1)[1] # remove signature
|
1269
|
+
|
1270
|
+
return wrapper
|
1271
|
+
return decorator
|
1272
|
+
|
1273
|
+
|
1274
|
+
def np_vecdot(x1, x2, /, *, axis=-1):
|
1275
|
+
# `np.vecdot` has advantages (e.g. see gh-22462), so let's use it when
|
1276
|
+
# available. As functions are translated to Array API, `np_vecdot` can be
|
1277
|
+
# replaced with `xp.vecdot`.
|
1278
|
+
if np.__version__ > "2.0":
|
1279
|
+
return np.vecdot(x1, x2, axis=axis)
|
1280
|
+
else:
|
1281
|
+
# of course there are other fancy ways of doing this (e.g. `einsum`)
|
1282
|
+
# but let's keep it simple since it's temporary
|
1283
|
+
return np.sum(x1 * x2, axis=axis)
|