scikit-complexity 0.2.0__py3-none-any.whl

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  1. scikit_complexity-0.2.0.dist-info/METADATA +317 -0
  2. scikit_complexity-0.2.0.dist-info/RECORD +1748 -0
  3. scikit_complexity-0.2.0.dist-info/WHEEL +4 -0
  4. scikit_complexity-0.2.0.dist-info/entry_points.txt +4 -0
  5. scikit_complexity-0.2.0.dist-info/licenses/LICENSE +21 -0
  6. skcomplex/__init__.py +1 -0
  7. skcomplex/analysis/__init__.py +101 -0
  8. skcomplex/analysis/_alignment.py +263 -0
  9. skcomplex/analysis/_automata.py +658 -0
  10. skcomplex/analysis/_base.py +841 -0
  11. skcomplex/analysis/_clusters.py +298 -0
  12. skcomplex/analysis/_coarse_grain.py +183 -0
  13. skcomplex/analysis/_collapse.py +318 -0
  14. skcomplex/analysis/_complexity.py +129 -0
  15. skcomplex/analysis/_computational_mechanics.py +220 -0
  16. skcomplex/analysis/_correlation.py +364 -0
  17. skcomplex/analysis/_defects.py +111 -0
  18. skcomplex/analysis/_discovery.py +101 -0
  19. skcomplex/analysis/_displacement.py +135 -0
  20. skcomplex/analysis/_distribution.py +327 -0
  21. skcomplex/analysis/_domains.py +220 -0
  22. skcomplex/analysis/_embedding.py +235 -0
  23. skcomplex/analysis/_emergence.py +503 -0
  24. skcomplex/analysis/_entropy.py +425 -0
  25. skcomplex/analysis/_ergodicity.py +228 -0
  26. skcomplex/analysis/_events.py +301 -0
  27. skcomplex/analysis/_fit.py +368 -0
  28. skcomplex/analysis/_groups.py +205 -0
  29. skcomplex/analysis/_information.py +488 -0
  30. skcomplex/analysis/_invariants.py +409 -0
  31. skcomplex/analysis/_irreversibility.py +421 -0
  32. skcomplex/analysis/_kramers_moyal.py +104 -0
  33. skcomplex/analysis/_large_deviations.py +378 -0
  34. skcomplex/analysis/_linearization.py +231 -0
  35. skcomplex/analysis/_local_information.py +166 -0
  36. skcomplex/analysis/_loops.py +394 -0
  37. skcomplex/analysis/_lyapunov.py +342 -0
  38. skcomplex/analysis/_markov.py +303 -0
  39. skcomplex/analysis/_mode_decomposition.py +209 -0
  40. skcomplex/analysis/_motifs.py +239 -0
  41. skcomplex/analysis/_neighbors.py +303 -0
  42. skcomplex/analysis/_networks.py +286 -0
  43. skcomplex/analysis/_operator.py +312 -0
  44. skcomplex/analysis/_partial_information.py +118 -0
  45. skcomplex/analysis/_passage.py +244 -0
  46. skcomplex/analysis/_recurrence.py +202 -0
  47. skcomplex/analysis/_reservoirs.py +387 -0
  48. skcomplex/analysis/_rolling.py +168 -0
  49. skcomplex/analysis/_scaling.py +370 -0
  50. skcomplex/analysis/_sections.py +225 -0
  51. skcomplex/analysis/_signatures.py +250 -0
  52. skcomplex/analysis/_sparse_identification.py +398 -0
  53. skcomplex/analysis/_spectrum.py +164 -0
  54. skcomplex/analysis/_stability.py +547 -0
  55. skcomplex/analysis/_surrogates.py +127 -0
  56. skcomplex/analysis/_symbolic.py +639 -0
  57. skcomplex/analysis/types.py +43 -0
  58. skcomplex/base.py +159 -0
  59. skcomplex/core/__init__.py +1 -0
  60. skcomplex/core/base.py +150 -0
  61. skcomplex/core/elements/__init__.py +21 -0
  62. skcomplex/core/elements/_base.py +84 -0
  63. skcomplex/core/elements/_compartment.py +52 -0
  64. skcomplex/core/elements/_density.py +52 -0
  65. skcomplex/core/elements/_element.py +80 -0
  66. skcomplex/core/elements/_field.py +192 -0
  67. skcomplex/core/elements/_group.py +241 -0
  68. skcomplex/core/elements/_lattice.py +115 -0
  69. skcomplex/core/elements/_point.py +66 -0
  70. skcomplex/core/interactions/__init__.py +89 -0
  71. skcomplex/core/interactions/_advection.py +134 -0
  72. skcomplex/core/interactions/_base.py +361 -0
  73. skcomplex/core/interactions/_cascade.py +195 -0
  74. skcomplex/core/interactions/_choice.py +320 -0
  75. skcomplex/core/interactions/_conservation.py +164 -0
  76. skcomplex/core/interactions/_coupling.py +741 -0
  77. skcomplex/core/interactions/_crossing.py +136 -0
  78. skcomplex/core/interactions/_diffusion.py +99 -0
  79. skcomplex/core/interactions/_encounter.py +201 -0
  80. skcomplex/core/interactions/_euler_lagrange.py +183 -0
  81. skcomplex/core/interactions/_evolution.py +520 -0
  82. skcomplex/core/interactions/_feedback.py +79 -0
  83. skcomplex/core/interactions/_gradient.py +293 -0
  84. skcomplex/core/interactions/_grouping.py +399 -0
  85. skcomplex/core/interactions/_hamiltonian.py +191 -0
  86. skcomplex/core/interactions/_hyperedge.py +96 -0
  87. skcomplex/core/interactions/_imitation.py +357 -0
  88. skcomplex/core/interactions/_impulse.py +133 -0
  89. skcomplex/core/interactions/_interaction.py +58 -0
  90. skcomplex/core/interactions/_jump.py +201 -0
  91. skcomplex/core/interactions/_life_cycle.py +424 -0
  92. skcomplex/core/interactions/_local_rule.py +134 -0
  93. skcomplex/core/interactions/_map.py +239 -0
  94. skcomplex/core/interactions/_matching.py +701 -0
  95. skcomplex/core/interactions/_movement.py +377 -0
  96. skcomplex/core/interactions/_neighbor.py +88 -0
  97. skcomplex/core/interactions/_optimization.py +206 -0
  98. skcomplex/core/interactions/_pair.py +82 -0
  99. skcomplex/core/interactions/_pair_coupling.py +169 -0
  100. skcomplex/core/interactions/_rate.py +240 -0
  101. skcomplex/core/interactions/_reaction.py +466 -0
  102. skcomplex/core/interactions/_reinforcement.py +226 -0
  103. skcomplex/core/interactions/_relaxation.py +103 -0
  104. skcomplex/core/interactions/_sampling.py +177 -0
  105. skcomplex/core/interactions/_satisfiability.py +145 -0
  106. skcomplex/core/interactions/_sign_adjustment.py +222 -0
  107. skcomplex/core/interactions/_topology.py +215 -0
  108. skcomplex/core/interactions/_training.py +184 -0
  109. skcomplex/core/interactions/_transfer.py +669 -0
  110. skcomplex/core/interactions/_transition.py +427 -0
  111. skcomplex/core/laws/__init__.py +60 -0
  112. skcomplex/core/laws/_base.py +194 -0
  113. skcomplex/core/laws/_bilinear.py +91 -0
  114. skcomplex/core/laws/_boundary.py +59 -0
  115. skcomplex/core/laws/_cascade.py +79 -0
  116. skcomplex/core/laws/_crossing.py +87 -0
  117. skcomplex/core/laws/_dissipator.py +79 -0
  118. skcomplex/core/laws/_drive.py +56 -0
  119. skcomplex/core/laws/_emission.py +81 -0
  120. skcomplex/core/laws/_encounter.py +96 -0
  121. skcomplex/core/laws/_equation.py +105 -0
  122. skcomplex/core/laws/_extremal.py +94 -0
  123. skcomplex/core/laws/_flux.py +108 -0
  124. skcomplex/core/laws/_fractional_noise.py +65 -0
  125. skcomplex/core/laws/_generator.py +66 -0
  126. skcomplex/core/laws/_gradient_step.py +89 -0
  127. skcomplex/core/laws/_jump.py +137 -0
  128. skcomplex/core/laws/_local_rule.py +92 -0
  129. skcomplex/core/laws/_match.py +321 -0
  130. skcomplex/core/laws/_noise.py +125 -0
  131. skcomplex/core/laws/_rate.py +82 -0
  132. skcomplex/core/laws/_rule.py +82 -0
  133. skcomplex/core/laws/_sample.py +65 -0
  134. skcomplex/core/laws/_transfer.py +165 -0
  135. skcomplex/core/laws/_transition.py +77 -0
  136. skcomplex/core/laws/_update.py +121 -0
  137. skcomplex/core/laws/utils/__init__.py +142 -0
  138. skcomplex/core/laws/utils/_agents.py +127 -0
  139. skcomplex/core/laws/utils/_components.py +63 -0
  140. skcomplex/core/laws/utils/_conditions.py +198 -0
  141. skcomplex/core/laws/utils/_contractions.py +74 -0
  142. skcomplex/core/laws/utils/_delays.py +170 -0
  143. skcomplex/core/laws/utils/_history.py +167 -0
  144. skcomplex/core/laws/utils/_local_operators.py +68 -0
  145. skcomplex/core/laws/utils/_lookups.py +40 -0
  146. skcomplex/core/laws/utils/_moments.py +122 -0
  147. skcomplex/core/laws/utils/_operators.py +237 -0
  148. skcomplex/core/laws/utils/_phase.py +126 -0
  149. skcomplex/core/laws/utils/_pointwise.py +160 -0
  150. skcomplex/core/laws/utils/_reductions.py +942 -0
  151. skcomplex/core/laws/utils/_signals.py +214 -0
  152. skcomplex/core/laws/utils/_tables.py +4 -0
  153. skcomplex/core/laws/utils/_tensors.py +235 -0
  154. skcomplex/core/spaces/__init__.py +52 -0
  155. skcomplex/core/spaces/_adjacency.py +34 -0
  156. skcomplex/core/spaces/_base.py +218 -0
  157. skcomplex/core/spaces/_box.py +41 -0
  158. skcomplex/core/spaces/_cayley.py +352 -0
  159. skcomplex/core/spaces/_cone.py +65 -0
  160. skcomplex/core/spaces/_continuous.py +93 -0
  161. skcomplex/core/spaces/_continuous_time.py +27 -0
  162. skcomplex/core/spaces/_discrete_time.py +53 -0
  163. skcomplex/core/spaces/_generator.py +51 -0
  164. skcomplex/core/spaces/_lattice.py +194 -0
  165. skcomplex/core/spaces/_lattice_neighborhood.py +50 -0
  166. skcomplex/core/spaces/_memory.py +45 -0
  167. skcomplex/core/spaces/_mesh.py +71 -0
  168. skcomplex/core/spaces/_moore.py +49 -0
  169. skcomplex/core/spaces/_nearest.py +41 -0
  170. skcomplex/core/spaces/_network.py +256 -0
  171. skcomplex/core/spaces/_phase.py +136 -0
  172. skcomplex/core/spaces/_radius.py +40 -0
  173. skcomplex/core/spaces/_static_time.py +34 -0
  174. skcomplex/core/spaces/_triangular.py +37 -0
  175. skcomplex/core/spaces/_von_neumann.py +51 -0
  176. skcomplex/core/specs/__init__.py +25 -0
  177. skcomplex/core/specs/_census_record_spec.py +72 -0
  178. skcomplex/core/specs/_census_spec.py +40 -0
  179. skcomplex/core/specs/_compiled_agents_spec.py +62 -0
  180. skcomplex/core/specs/_compiled_element_spec.py +59 -0
  181. skcomplex/core/specs/_compiled_interaction_spec.py +33 -0
  182. skcomplex/core/specs/_lattice_context_spec.py +40 -0
  183. skcomplex/core/specs/_lattice_state_spec.py +49 -0
  184. skcomplex/core/specs/_node_spec.py +64 -0
  185. skcomplex/core/specs/_operator_view_spec.py +135 -0
  186. skcomplex/core/specs/_scenario_spec.py +45 -0
  187. skcomplex/core/specs/_subsystem_spec.py +24 -0
  188. skcomplex/core/system.py +140 -0
  189. skcomplex/core/types.py +249 -0
  190. skcomplex/engine/__init__.py +5 -0
  191. skcomplex/engine/_utils.py +278 -0
  192. skcomplex/engine/backends/__init__.py +13 -0
  193. skcomplex/engine/backends/_base.py +329 -0
  194. skcomplex/engine/backends/_jax.py +285 -0
  195. skcomplex/engine/backends/_numba.py +601 -0
  196. skcomplex/engine/backends/_numba_components.py +67 -0
  197. skcomplex/engine/backends/_numba_loops.py +163 -0
  198. skcomplex/engine/backends/_numba_neighbours.py +435 -0
  199. skcomplex/engine/backends/_numba_printer.py +1023 -0
  200. skcomplex/engine/backends/_numba_stencils.py +66 -0
  201. skcomplex/engine/backends/_numpy.py +215 -0
  202. skcomplex/engine/compile/__init__.py +27 -0
  203. skcomplex/engine/compile/_base.py +582 -0
  204. skcomplex/engine/compile/_bound_renewal_spec.py +47 -0
  205. skcomplex/engine/compile/_compilation.py +351 -0
  206. skcomplex/engine/compile/_compile.py +100 -0
  207. skcomplex/engine/compile/_complex.py +216 -0
  208. skcomplex/engine/compile/_draw_lowering.py +373 -0
  209. skcomplex/engine/compile/_field_lowering.py +1668 -0
  210. skcomplex/engine/compile/_flows.py +691 -0
  211. skcomplex/engine/compile/_forms.py +48 -0
  212. skcomplex/engine/compile/_laws.py +42 -0
  213. skcomplex/engine/compile/_learning_compiler.py +481 -0
  214. skcomplex/engine/compile/_member_reductions.py +206 -0
  215. skcomplex/engine/compile/_members.py +244 -0
  216. skcomplex/engine/compile/_observables.py +940 -0
  217. skcomplex/engine/compile/_observer.py +185 -0
  218. skcomplex/engine/compile/_pass_compiler.py +1534 -0
  219. skcomplex/engine/compile/_probe.py +78 -0
  220. skcomplex/engine/compile/_renewal_law.py +70 -0
  221. skcomplex/engine/compile/passes/__init__.py +34 -0
  222. skcomplex/engine/compile/passes/_agents.py +111 -0
  223. skcomplex/engine/compile/passes/_agents_problem.py +143 -0
  224. skcomplex/engine/compile/passes/_census.py +808 -0
  225. skcomplex/engine/compile/passes/_check_fractional_noise.py +107 -0
  226. skcomplex/engine/compile/passes/_collect.py +31 -0
  227. skcomplex/engine/compile/passes/_compile_encounters.py +301 -0
  228. skcomplex/engine/compile/passes/_complex.py +198 -0
  229. skcomplex/engine/compile/passes/_conserved_noise.py +224 -0
  230. skcomplex/engine/compile/passes/_core.py +116 -0
  231. skcomplex/engine/compile/passes/_declare_renewals.py +84 -0
  232. skcomplex/engine/compile/passes/_draws.py +29 -0
  233. skcomplex/engine/compile/passes/_encounter_functions.py +60 -0
  234. skcomplex/engine/compile/passes/_encounter_jacobian.py +25 -0
  235. skcomplex/engine/compile/passes/_encounter_problem.py +32 -0
  236. skcomplex/engine/compile/passes/_events.py +204 -0
  237. skcomplex/engine/compile/passes/_expand_flows.py +32 -0
  238. skcomplex/engine/compile/passes/_field_functions.py +647 -0
  239. skcomplex/engine/compile/passes/_field_jacobian.py +38 -0
  240. skcomplex/engine/compile/passes/_field_problem.py +106 -0
  241. skcomplex/engine/compile/passes/_flatten.py +339 -0
  242. skcomplex/engine/compile/passes/_flows_problem.py +29 -0
  243. skcomplex/engine/compile/passes/_form.py +82 -0
  244. skcomplex/engine/compile/passes/_fractional_form.py +172 -0
  245. skcomplex/engine/compile/passes/_fractional_problem.py +91 -0
  246. skcomplex/engine/compile/passes/_functions.py +485 -0
  247. skcomplex/engine/compile/passes/_hilbert_space_error.py +10 -0
  248. skcomplex/engine/compile/passes/_hyperedges.py +598 -0
  249. skcomplex/engine/compile/passes/_jacobian.py +38 -0
  250. skcomplex/engine/compile/passes/_kernels.py +407 -0
  251. skcomplex/engine/compile/passes/_lattices.py +818 -0
  252. skcomplex/engine/compile/passes/_layout.py +667 -0
  253. skcomplex/engine/compile/passes/_lower_fields.py +225 -0
  254. skcomplex/engine/compile/passes/_lower_flows.py +28 -0
  255. skcomplex/engine/compile/passes/_markov.py +329 -0
  256. skcomplex/engine/compile/passes/_mask_requests.py +121 -0
  257. skcomplex/engine/compile/passes/_members.py +30 -0
  258. skcomplex/engine/compile/passes/_noise.py +196 -0
  259. skcomplex/engine/compile/passes/_operator_compiler.py +843 -0
  260. skcomplex/engine/compile/passes/_orders.py +409 -0
  261. skcomplex/engine/compile/passes/_owners.py +90 -0
  262. skcomplex/engine/compile/passes/_particles.py +69 -0
  263. skcomplex/engine/compile/passes/_plan.py +130 -0
  264. skcomplex/engine/compile/passes/_problem.py +802 -0
  265. skcomplex/engine/compile/passes/_reduction_lowering.py +1193 -0
  266. skcomplex/engine/compile/passes/_reductions.py +84 -0
  267. skcomplex/engine/compile/passes/_renewal_problem.py +357 -0
  268. skcomplex/engine/compile/passes/_request_jumps.py +51 -0
  269. skcomplex/engine/compile/passes/_residences.py +140 -0
  270. skcomplex/engine/compile/passes/_rows.py +162 -0
  271. skcomplex/engine/compile/passes/_set_renewals_apart.py +29 -0
  272. skcomplex/engine/compile/passes/_set_rules_apart.py +28 -0
  273. skcomplex/engine/compile/passes/_specs.py +1317 -0
  274. skcomplex/engine/compile/passes/_split_requests.py +44 -0
  275. skcomplex/engine/compile/passes/_topology_functions.py +265 -0
  276. skcomplex/engine/compile/passes/_topology_problem.py +27 -0
  277. skcomplex/engine/compile/passes/_towards.py +66 -0
  278. skcomplex/engine/compile/passes/_unpack_matches.py +29 -0
  279. skcomplex/engine/compile/passes/_unpack_renewals.py +41 -0
  280. skcomplex/engine/problems/__init__.py +61 -0
  281. skcomplex/engine/problems/_base.py +150 -0
  282. skcomplex/engine/problems/_base_problem_spec.py +153 -0
  283. skcomplex/engine/problems/_block_spec.py +48 -0
  284. skcomplex/engine/problems/_born_spec.py +24 -0
  285. skcomplex/engine/problems/_cascade_kernel.py +134 -0
  286. skcomplex/engine/problems/_collision_kernel.py +147 -0
  287. skcomplex/engine/problems/_compiled_delay_spec.py +21 -0
  288. skcomplex/engine/problems/_compiled_request_spec.py +46 -0
  289. skcomplex/engine/problems/_control_problem_spec.py +90 -0
  290. skcomplex/engine/problems/_declarations_spec.py +126 -0
  291. skcomplex/engine/problems/_delayed_state_spec.py +50 -0
  292. skcomplex/engine/problems/_diffusive_limit_spec.py +50 -0
  293. skcomplex/engine/problems/_draw_kernel.py +128 -0
  294. skcomplex/engine/problems/_drive_kernel.py +65 -0
  295. skcomplex/engine/problems/_dynamics_spec.py +28 -0
  296. skcomplex/engine/problems/_edge_row_search.py +78 -0
  297. skcomplex/engine/problems/_edge_search.py +64 -0
  298. skcomplex/engine/problems/_encounter_kernel.py +200 -0
  299. skcomplex/engine/problems/_event_kernel.py +70 -0
  300. skcomplex/engine/problems/_expression_printer.py +410 -0
  301. skcomplex/engine/problems/_extremal_kernel.py +125 -0
  302. skcomplex/engine/problems/_field_operator_kernel.py +105 -0
  303. skcomplex/engine/problems/_finite_volume_kernel.py +423 -0
  304. skcomplex/engine/problems/_flow_term_spec.py +45 -0
  305. skcomplex/engine/problems/_frame_spec.py +105 -0
  306. skcomplex/engine/problems/_jacobian_kernel.py +575 -0
  307. skcomplex/engine/problems/_kernel_spec.py +130 -0
  308. skcomplex/engine/problems/_kinetic_problem_spec.py +23 -0
  309. skcomplex/engine/problems/_law_kernel.py +604 -0
  310. skcomplex/engine/problems/_learning_problem_spec.py +67 -0
  311. skcomplex/engine/problems/_linear_term_spec.py +50 -0
  312. skcomplex/engine/problems/_loop_term_spec.py +44 -0
  313. skcomplex/engine/problems/_lowered_kernels_spec.py +59 -0
  314. skcomplex/engine/problems/_markov_kernel.py +68 -0
  315. skcomplex/engine/problems/_metric_search.py +155 -0
  316. skcomplex/engine/problems/_monte_carlo_kernel.py +213 -0
  317. skcomplex/engine/problems/_neighborhood_kernel.py +594 -0
  318. skcomplex/engine/problems/_noise_term_spec.py +26 -0
  319. skcomplex/engine/problems/_observed_spec.py +22 -0
  320. skcomplex/engine/problems/_operator_kernel.py +102 -0
  321. skcomplex/engine/problems/_operator_lowering.py +323 -0
  322. skcomplex/engine/problems/_operator_problem_spec.py +138 -0
  323. skcomplex/engine/problems/_output_spec.py +78 -0
  324. skcomplex/engine/problems/_pair_search.py +86 -0
  325. skcomplex/engine/problems/_partials_spec.py +27 -0
  326. skcomplex/engine/problems/_partition_spec.py +39 -0
  327. skcomplex/engine/problems/_printed_spec.py +24 -0
  328. skcomplex/engine/problems/_problem_functions_spec.py +102 -0
  329. skcomplex/engine/problems/_problem_spec.py +365 -0
  330. skcomplex/engine/problems/_random_stream.py +49 -0
  331. skcomplex/engine/problems/_record_spec.py +22 -0
  332. skcomplex/engine/problems/_recorded_spec.py +21 -0
  333. skcomplex/engine/problems/_reduction_kernel.py +254 -0
  334. skcomplex/engine/problems/_reduction_schedule_spec.py +97 -0
  335. skcomplex/engine/problems/_reference_spec.py +114 -0
  336. skcomplex/engine/problems/_relation_spec.py +29 -0
  337. skcomplex/engine/problems/_renewal_kernel.py +250 -0
  338. skcomplex/engine/problems/_request_spec.py +27 -0
  339. skcomplex/engine/problems/_rule_kernel.py +227 -0
  340. skcomplex/engine/problems/_set_symbol_spec.py +28 -0
  341. skcomplex/engine/problems/_source_loader.py +113 -0
  342. skcomplex/engine/problems/_static_search.py +42 -0
  343. skcomplex/engine/problems/_steps.py +39 -0
  344. skcomplex/engine/problems/_sweep_spec.py +26 -0
  345. skcomplex/engine/problems/_symmetry_spec.py +29 -0
  346. skcomplex/engine/problems/_too_dense.py +8 -0
  347. skcomplex/engine/problems/_topology_kernel.py +589 -0
  348. skcomplex/engine/problems/_transfer_network.py +4 -0
  349. skcomplex/engine/problems/_transfer_network_spec.py +50 -0
  350. skcomplex/engine/problems/_transfer_state_spec.py +68 -0
  351. skcomplex/engine/runtime/__init__.py +22 -0
  352. skcomplex/engine/runtime/_as_fast_as_possible.py +17 -0
  353. skcomplex/engine/runtime/_base.py +137 -0
  354. skcomplex/engine/runtime/_conservation.py +125 -0
  355. skcomplex/engine/runtime/_invariants.py +100 -0
  356. skcomplex/engine/runtime/_real_time.py +55 -0
  357. skcomplex/engine/runtime/_recorder.py +84 -0
  358. skcomplex/engine/runtime/_simulations.py +665 -0
  359. skcomplex/engine/runtime/_trajectories.py +314 -0
  360. skcomplex/engine/solvers/__init__.py +95 -0
  361. skcomplex/engine/solvers/_base.py +372 -0
  362. skcomplex/engine/solvers/_caputo.py +194 -0
  363. skcomplex/engine/solvers/_collocation.py +334 -0
  364. skcomplex/engine/solvers/_convolution.py +155 -0
  365. skcomplex/engine/solvers/_cosimulation.py +400 -0
  366. skcomplex/engine/solvers/_crank_nicolson.py +32 -0
  367. skcomplex/engine/solvers/_defaults.py +34 -0
  368. skcomplex/engine/solvers/_etdrk4.py +86 -0
  369. skcomplex/engine/solvers/_euler_maruyama.py +161 -0
  370. skcomplex/engine/solvers/_event_locator.py +249 -0
  371. skcomplex/engine/solvers/_external.py +94 -0
  372. skcomplex/engine/solvers/_fractional_abm.py +126 -0
  373. skcomplex/engine/solvers/_fractional_euler_maruyama.py +322 -0
  374. skcomplex/engine/solvers/_gillespie.py +135 -0
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  1620. skcomplex/models/social/segregation/_resident_view.py +13 -0
  1621. skcomplex/models/social/segregation/_schelling.py +75 -0
  1622. skcomplex/models/social/spreading/__init__.py +37 -0
  1623. skcomplex/models/social/spreading/_cascades.py +118 -0
  1624. skcomplex/models/social/spreading/_exposure.py +166 -0
  1625. skcomplex/models/social/spreading/_growing_word.py +55 -0
  1626. skcomplex/models/social/spreading/_growing_word_view.py +13 -0
  1627. skcomplex/models/social/spreading/_growth.py +52 -0
  1628. skcomplex/models/social/spreading/_infective.py +55 -0
  1629. skcomplex/models/social/spreading/_listeners.py +41 -0
  1630. skcomplex/models/social/spreading/_participant.py +50 -0
  1631. skcomplex/models/social/spreading/_rumour_contacts.py +81 -0
  1632. skcomplex/models/social/spreading/_rumours.py +57 -0
  1633. skcomplex/models/social/spreading/_simplicial.py +120 -0
  1634. skcomplex/models/social/spreading/_simplicial_infection.py +64 -0
  1635. skcomplex/models/social/spreading/_threshold_activation.py +50 -0
  1636. skcomplex/models/social/spreading/_threshold_node_view.py +13 -0
  1637. skcomplex/models/social/spreading/_writing.py +86 -0
  1638. skcomplex/models/types.py +10 -0
  1639. skcomplex/specs/__init__.py +198 -0
  1640. skcomplex/specs/_accelerated_spec.py +46 -0
  1641. skcomplex/specs/_agent_snapshot_spec.py +34 -0
  1642. skcomplex/specs/_agent_state_spec.py +26 -0
  1643. skcomplex/specs/_arguments_spec.py +60 -0
  1644. skcomplex/specs/_axis_spec.py +59 -0
  1645. skcomplex/specs/_base_record_spec.py +16 -0
  1646. skcomplex/specs/_base_spec.py +73 -0
  1647. skcomplex/specs/_base_structure_spec.py +173 -0
  1648. skcomplex/specs/_batch_matching_spec.py +23 -0
  1649. skcomplex/specs/_breakpoints_spec.py +58 -0
  1650. skcomplex/specs/_call_spec.py +64 -0
  1651. skcomplex/specs/_capacity_rows_spec.py +120 -0
  1652. skcomplex/specs/_cardinality_spec.py +58 -0
  1653. skcomplex/specs/_cascade_record_spec.py +36 -0
  1654. skcomplex/specs/_clamp_spec.py +54 -0
  1655. skcomplex/specs/_clause_spec.py +42 -0
  1656. skcomplex/specs/_compiled_flow_spec.py +20 -0
  1657. skcomplex/specs/_composed_rule_spec.py +33 -0
  1658. skcomplex/specs/_continuous_matching_spec.py +48 -0
  1659. skcomplex/specs/_control_solution_spec.py +54 -0
  1660. skcomplex/specs/_control_spec.py +21 -0
  1661. skcomplex/specs/_covariance_adaptation_spec.py +25 -0
  1662. skcomplex/specs/_dataset_spec.py +85 -0
  1663. skcomplex/specs/_delay_spec.py +27 -0
  1664. skcomplex/specs/_dialect_spec.py +207 -0
  1665. skcomplex/specs/_differential_evolution_spec.py +33 -0
  1666. skcomplex/specs/_direction_spec.py +44 -0
  1667. skcomplex/specs/_draw_spec.py +273 -0
  1668. skcomplex/specs/_entry_spec.py +403 -0
  1669. skcomplex/specs/_event_record_spec.py +37 -0
  1670. skcomplex/specs/_evolution_strategy_spec.py +25 -0
  1671. skcomplex/specs/_extremal_record_spec.py +32 -0
  1672. skcomplex/specs/_fractional_rows_spec.py +33 -0
  1673. skcomplex/specs/_fractional_state_spec.py +30 -0
  1674. skcomplex/specs/_held_reduction_spec.py +29 -0
  1675. skcomplex/specs/_hilbert_spec.py +75 -0
  1676. skcomplex/specs/_hyperedge_reduction_spec.py +38 -0
  1677. skcomplex/specs/_issue_spec.py +52 -0
  1678. skcomplex/specs/_iterative_matching_spec.py +39 -0
  1679. skcomplex/specs/_jump_channels_spec.py +40 -0
  1680. skcomplex/specs/_jump_path_spec.py +29 -0
  1681. skcomplex/specs/_layer_spec.py +47 -0
  1682. skcomplex/specs/_layout_spec.py +158 -0
  1683. skcomplex/specs/_local_operator_spec.py +72 -0
  1684. skcomplex/specs/_lookup_spec.py +33 -0
  1685. skcomplex/specs/_loop_spec.py +17 -0
  1686. skcomplex/specs/_lowered_functions_spec.py +71 -0
  1687. skcomplex/specs/_match_spec.py +37 -0
  1688. skcomplex/specs/_matrix_law_spec.py +31 -0
  1689. skcomplex/specs/_move_spec.py +69 -0
  1690. skcomplex/specs/_neighbor_read_spec.py +83 -0
  1691. skcomplex/specs/_neighbor_reduction_spec.py +39 -0
  1692. skcomplex/specs/_network_rows_spec.py +124 -0
  1693. skcomplex/specs/_network_snapshot_spec.py +61 -0
  1694. skcomplex/specs/_noise_process_spec.py +41 -0
  1695. skcomplex/specs/_objective_spec.py +39 -0
  1696. skcomplex/specs/_observable_spec.py +79 -0
  1697. skcomplex/specs/_operator_spec.py +170 -0
  1698. skcomplex/specs/_orders_spec.py +16 -0
  1699. skcomplex/specs/_outer_totalistic_spec.py +38 -0
  1700. skcomplex/specs/_owners_spec.py +28 -0
  1701. skcomplex/specs/_pair_read_spec.py +38 -0
  1702. skcomplex/specs/_parameter_spec.py +81 -0
  1703. skcomplex/specs/_parameters_spec.py +26 -0
  1704. skcomplex/specs/_particle_swarm_spec.py +33 -0
  1705. skcomplex/specs/_partner_spec.py +98 -0
  1706. skcomplex/specs/_partner_switch_spec.py +39 -0
  1707. skcomplex/specs/_phase_spec.py +61 -0
  1708. skcomplex/specs/_phases_schedule_spec.py +59 -0
  1709. skcomplex/specs/_plan_spec.py +18 -0
  1710. skcomplex/specs/_planned_partition_spec.py +30 -0
  1711. skcomplex/specs/_queue_spec.py +46 -0
  1712. skcomplex/specs/_radius_spec.py +66 -0
  1713. skcomplex/specs/_random_search_spec.py +51 -0
  1714. skcomplex/specs/_read_spec.py +45 -0
  1715. skcomplex/specs/_reduction_spec.py +48 -0
  1716. skcomplex/specs/_renewal_record_spec.py +49 -0
  1717. skcomplex/specs/_requirement_spec.py +32 -0
  1718. skcomplex/specs/_role_spec.py +54 -0
  1719. skcomplex/specs/_run_result_spec.py +52 -0
  1720. skcomplex/specs/_run_state_spec.py +41 -0
  1721. skcomplex/specs/_sampled_draw_spec.py +32 -0
  1722. skcomplex/specs/_sampler_spec.py +57 -0
  1723. skcomplex/specs/_samples_spec.py +29 -0
  1724. skcomplex/specs/_schedule_spec.py +17 -0
  1725. skcomplex/specs/_sector_spec.py +31 -0
  1726. skcomplex/specs/_segment_spec.py +21 -0
  1727. skcomplex/specs/_series_spec.py +29 -0
  1728. skcomplex/specs/_signature_spec.py +55 -0
  1729. skcomplex/specs/_snapshots_spec.py +56 -0
  1730. skcomplex/specs/_stable_matching_spec.py +58 -0
  1731. skcomplex/specs/_state_spec.py +138 -0
  1732. skcomplex/specs/_step_spec.py +39 -0
  1733. skcomplex/specs/_structure_state_spec.py +30 -0
  1734. skcomplex/specs/_support_spec.py +76 -0
  1735. skcomplex/specs/_symmetry_spec.py +59 -0
  1736. skcomplex/specs/_table_spec.py +42 -0
  1737. skcomplex/specs/_table_values_spec.py +36 -0
  1738. skcomplex/specs/_tensor_spec.py +197 -0
  1739. skcomplex/specs/_topology_request_spec.py +97 -0
  1740. skcomplex/specs/_totalistic_spec.py +37 -0
  1741. skcomplex/specs/_unknown_spec.py +22 -0
  1742. skcomplex/specs/_validation_report_spec.py +62 -0
  1743. skcomplex/specs/_variable_spec.py +124 -0
  1744. skcomplex/specs/_visual_spec.py +30 -0
  1745. skcomplex/specs/_weight_spec.py +16 -0
  1746. skcomplex/specs/_wiener_block_spec.py +31 -0
  1747. skcomplex/specs/_wiener_process_spec.py +54 -0
  1748. skcomplex/types.py +140 -0
@@ -0,0 +1,802 @@
1
+ """Assemble the problem of a compilation from its layout, its numeric functions, and its compiled events."""
2
+
3
+ # Author: Georgios Douzas <gdouzas@icloud.com>
4
+ # License: MIT
5
+
6
+ from collections import Counter, defaultdict
7
+ from collections.abc import Callable, Iterable, Mapping, Sequence
8
+
9
+ import numpy as np
10
+ import numpy.typing as npt
11
+ from sage.all__sagemath_symbolics import SR, Expression
12
+ from sage.modules.free_module_element import FreeModuleElement
13
+
14
+ from ....core.laws import BaseLaw, CrossingLaw, JumpLaw, RateLaw
15
+ from ....core.spaces import LatticeSpace
16
+ from ....core.specs import CompiledElementSpec, CompiledInteractionSpec, NodeSpec
17
+ from ....errors import PipelineError, ValidationError
18
+ from ....specs import CallSpec, LayoutSpec, VisualSpec
19
+ from ....specs._breakpoints_spec import _BreakpointsSpec
20
+ from ....specs._delay_spec import _DelaySpec
21
+ from ....types import Array, FormKind, Indices, VariableKind
22
+ from ..._utils import components_of, declarations_of, symbols_of
23
+ from ...problems import (
24
+ BlockSpec,
25
+ DeclarationsSpec,
26
+ ExpressionPrinter,
27
+ KernelSpec,
28
+ ProblemSpec,
29
+ ReductionScheduleSpec,
30
+ ReferenceSpec,
31
+ )
32
+ from ...problems._delayed_state_spec import _DelayedStateSpec
33
+ from ...problems._event_kernel import EventKernel
34
+ from ...problems._random_stream import RandomStream
35
+ from ...types import ReadKind, ScalarsFunction
36
+ from .._base import BasePass
37
+ from .._compilation import Compilation
38
+ from ._events import _SWITCHES, RELATIONS
39
+
40
+
41
+ class ProblemPass(BasePass):
42
+ """Pass that assembles the problem of the general parts of a compilation."""
43
+
44
+ def _get_reads(self) -> tuple[str, ...]:
45
+ """Return the fields of the compilation the pass reads."""
46
+ return (
47
+ 'layout',
48
+ 'specs',
49
+ 'reduced',
50
+ 'form',
51
+ 'functions',
52
+ 'jacobian',
53
+ 'matrices',
54
+ 'reductions',
55
+ 'events',
56
+ 'delays',
57
+ )
58
+
59
+ def _get_writes(self) -> tuple[str, ...]:
60
+ """Return the fields of the compilation the pass writes."""
61
+ return ('problem',)
62
+
63
+ def _run(self, inputs: object = None) -> None:
64
+ """Assemble the problem."""
65
+ compilation = self.compilation_
66
+ compilation.problem = self._problem_of(compilation)
67
+
68
+ @staticmethod
69
+ def _companions(blocks: list[BlockSpec]) -> dict[str, tuple[str, str, int]]:
70
+ """Return every companion state by name, with its kind, the name of its state, and its index."""
71
+ companions = {}
72
+ for block in blocks:
73
+ if block.node.interaction or block.node.is_agent:
74
+ continue
75
+ declarations = declarations_of(block.node.component_type, VariableKind.STATE)
76
+ for variable, entry in block.entries.items():
77
+ declaration = declarations.get(variable)
78
+ if declaration is None or (declaration.derivative_of is None and declaration.lag_of is None):
79
+ continue
80
+ kind, base = (
81
+ ('derivative', declaration.derivative_of)
82
+ if declaration.derivative_of
83
+ else ('lag', declaration.lag_of)
84
+ )
85
+ companions[entry.name] = (kind, f'{block.node.path}.{base}', declaration.index)
86
+ return companions
87
+
88
+ @staticmethod
89
+ def _compiled_elements(blocks: list[BlockSpec]) -> tuple[CompiledElementSpec, ...]:
90
+ """Return the elements and groups that are not agents with the dotted names of their states and parameters."""
91
+ return tuple(
92
+ CompiledElementSpec(
93
+ path=block.node.path,
94
+ element=block.node.component,
95
+ states={
96
+ name: f'{block.node.path}.{name}'
97
+ for name in declarations_of(block.node.component_type, VariableKind.STATE)
98
+ },
99
+ parameters={
100
+ name: f'{block.node.path}.{name}'
101
+ for name in declarations_of(block.node.component_type, VariableKind.PARAMETER)
102
+ },
103
+ visual=ProblemPass._visual_of(block.node),
104
+ members=block.node.members,
105
+ adaptive={
106
+ name: declaration
107
+ for name, declaration in declarations_of(block.node.component_type, VariableKind.STATE).items()
108
+ if declaration.adaptive
109
+ },
110
+ lattice_shape=ProblemPass._lattice_shape(block.node.component),
111
+ roles={
112
+ name: declaration.role
113
+ for name, declaration in declarations_of(block.node.component_type, VariableKind.STATE).items()
114
+ if declaration.role is not None
115
+ },
116
+ )
117
+ for block in blocks
118
+ if not block.node.interaction and not block.node.is_agent
119
+ )
120
+
121
+ @staticmethod
122
+ def _lattice_shape(component: object) -> tuple[int, ...] | None:
123
+ """Return the number of sites along every dimension of the lattice an element lives on, or `None` off one."""
124
+ space = getattr(component, 'space', None)
125
+ return space.shape_ if isinstance(space, LatticeSpace) else None
126
+
127
+ @staticmethod
128
+ def _compiled_interactions(
129
+ blocks: list[BlockSpec],
130
+ specs: list[tuple[KernelSpec, BlockSpec]],
131
+ ) -> tuple[CompiledInteractionSpec, ...]:
132
+ """Return the interactions with the paths their roles bind to."""
133
+ return tuple(
134
+ CompiledInteractionSpec(
135
+ path=block.node.path,
136
+ interaction=block.node.component,
137
+ roles=next(spec.roles for spec, _ in specs if spec.owner == block.node.path),
138
+ )
139
+ for block in blocks
140
+ if block.node.interaction
141
+ )
142
+
143
+ @staticmethod
144
+ def _stream_of(compilation: Compilation) -> RandomStream:
145
+ """Return the random stream that the kernels of a compilation hold."""
146
+ kernels = compilation.kernels
147
+ return kernels.stream if kernels is not None and kernels.stream is not None else RandomStream()
148
+
149
+ @staticmethod
150
+ def _unknowns_of(compilation: Compilation, form: FormKind) -> Indices:
151
+ """Return the positions of the states the residuals of a static problem target, and none for other forms."""
152
+ rates = (
153
+ Compilation._required(compilation.kernels, 'kernels').kernels[RateLaw] if form == FormKind.STATIC else []
154
+ )
155
+ targets = [item.target.flat_indices for kernel in rates for item in kernel.outputs if item.target is not None]
156
+ return np.unique(np.concatenate([np.zeros(0, dtype=np.intp), *targets]))
157
+
158
+ @staticmethod
159
+ def _problem_of(compilation: Compilation) -> ProblemSpec:
160
+ """Return the problem of the general parts of a compilation, which passes of formalisms add to."""
161
+ declarations = Compilation._required(compilation.layout, 'layout')
162
+ blocks = list(declarations.blocks.values())
163
+ form = Compilation._required(compilation.form, 'form')
164
+ reduced = Compilation._required(compilation.reduced, 'reduced')
165
+ reductions = Compilation._required(compilation.reductions, 'reductions')
166
+ time = declarations.time
167
+ functions, delays, events = compilation.functions, compilation.delays, compilation.events
168
+ if functions is None or delays is None or events is None:
169
+ error_msg = 'ProblemPass reads the numeric functions, the delays, and the events, which no pass wrote.'
170
+ raise PipelineError(error_msg)
171
+ return ProblemSpec(
172
+ form=form,
173
+ states=LayoutSpec(tuple(declarations.states)),
174
+ parameters=LayoutSpec(tuple(declarations.parameters)),
175
+ initial_state=np.concatenate([np.zeros(0), *declarations.initial_states]),
176
+ initial_parameters=np.concatenate([np.zeros(0), *declarations.initial_parameters]),
177
+ time=time,
178
+ symbols={
179
+ entry.name: block.symbols[variable] for block in blocks for variable, entry in block.entries.items()
180
+ },
181
+ elements=ProblemPass._compiled_elements(blocks),
182
+ interactions=ProblemPass._compiled_interactions(
183
+ blocks,
184
+ Compilation._required(compilation.specs, 'specs'),
185
+ ),
186
+ system=compilation.system,
187
+ companions=ProblemPass._companions(blocks),
188
+ delays=ProblemPass._compile_delays(delays, time),
189
+ events=(
190
+ *ProblemPass._compile_events(events, time, reductions, declarations),
191
+ *(ProblemPass._hidden_events(reduced, time, reductions) if form == FormKind.ODE else ()),
192
+ ),
193
+ reductions=reductions.reductions,
194
+ jacobian=compilation.jacobian,
195
+ unknowns=ProblemPass._unknowns_of(compilation, form),
196
+ stream=ProblemPass._stream_of(compilation),
197
+ breakpoints=ProblemPass._breakpoints_in(reduced, events, time),
198
+ history=ProblemPass._history(blocks),
199
+ matrices=Compilation._required(compilation.matrices, 'matrices'),
200
+ equations=functions.equations,
201
+ equation_symbols=functions.equation_symbols,
202
+ has_callables=functions.has_callables,
203
+ has_group_sums=functions.has_group_sums,
204
+ drift=functions.drift,
205
+ sources=functions.sources,
206
+ diffusion=functions.diffusion,
207
+ noise_rows=functions.noise_rows,
208
+ noise_columns=functions.noise_columns,
209
+ n_processes=functions.n_processes,
210
+ noise_blocks=functions.noise_blocks,
211
+ propensities=functions.propensities,
212
+ jumps=functions.jumps,
213
+ update=functions.update,
214
+ boundary=functions.boundary,
215
+ draws=functions.draws,
216
+ backend=functions.backend,
217
+ backends=functions.backends,
218
+ accelerated=functions.accelerated,
219
+ )
220
+
221
+ @staticmethod
222
+ def _same_zeros(first: Expression, second: Expression) -> bool:
223
+ """Check that two conditions are the same expression or opposite ones, which switch at the same states."""
224
+ return bool(first.is_trivially_equal(second) or (first + second).expand().is_trivially_equal(SR(0)))
225
+
226
+ @staticmethod
227
+ def _linear_root(expression: Expression, time: Expression) -> float | None:
228
+ """Return where an expression that is linear in time with numeric coefficients is zero, or `None`."""
229
+ slope = expression.diff(time)
230
+ if (
231
+ not slope.is_numeric()
232
+ or slope.is_zero()
233
+ or (expression.variables() and set(expression.variables()) - {time})
234
+ ):
235
+ return None
236
+ return float(-expression.subs({time: 0}) / slope)
237
+
238
+ @staticmethod
239
+ def _first_value(function: ScalarsFunction) -> Callable[[float, Array, Array], float]:
240
+ """Return a function that gives the single value of a scalar function."""
241
+
242
+ def first(t: float, x: Array, p: Array) -> float:
243
+ return function(t, x, p)[0]
244
+
245
+ return first
246
+
247
+ @staticmethod
248
+ def _reduced_guard(
249
+ function: ScalarsFunction,
250
+ reductions: ReductionScheduleSpec,
251
+ ) -> Callable[[float, Array, Array], float]:
252
+ """Return a function that gives the single value of a scalar function, reading the reductions at its state."""
253
+ if not reductions.steps:
254
+ return ProblemPass._first_value(function)
255
+
256
+ def reduced(t: float, x: Array, p: Array) -> float:
257
+ return function(t, x, reductions.extend(t, x, p))[0]
258
+
259
+ return reduced
260
+
261
+ @staticmethod
262
+ def _flat_sources(references: Mapping[Expression, ReferenceSpec], owner: str) -> dict[Expression, tuple[bool, int]]:
263
+ """Return the vector and flat index of every symbol of single components in a namespace."""
264
+ del owner
265
+ return {
266
+ item: (reference.is_state, reference.entry.start + reference.column)
267
+ for item, reference in references.items()
268
+ if reference.entry.members is None
269
+ }
270
+
271
+ @staticmethod
272
+ def _reset_indices(reference: ReferenceSpec) -> npt.NDArray[np.intp]:
273
+ """Return the flat indices a reset of a single element's state or of every group member's state writes."""
274
+ if reference.entry.members is not None and reference.source in {ReadKind.MEMBER, ReadKind.REDUCED}:
275
+ return reference.flat_indices.astype(np.intp)
276
+ return np.asarray([reference.entry.start + reference.column], dtype=np.intp)
277
+
278
+ @staticmethod
279
+ def _scalar_function(
280
+ expressions: Sequence[object],
281
+ sources: Mapping[Expression, tuple[bool, int]],
282
+ time: Expression,
283
+ owner: str,
284
+ ) -> ScalarsFunction:
285
+ """Return a function of time, the state vector, and the parameter vector that evaluates scalar expressions."""
286
+ values = [SR(expression) for expression in expressions]
287
+ arguments = sorted(symbols_of(values) - {time}, key=str)
288
+ unknown = [item for item in arguments if item not in sources]
289
+ if unknown:
290
+ error_msg = (
291
+ f'An event or delay of {owner} uses {", ".join(map(str, unknown))}, which belong to group members. '
292
+ 'Events and delays read states and parameters of single elements and interactions.'
293
+ )
294
+ raise ValidationError(error_msg)
295
+ function = ExpressionPrinter(time=time, compiled=True).check().prepare(arguments).run(values).code_
296
+ if not callable(function):
297
+ error_msg = f'The printer returns no function of the events or delays of {owner}.'
298
+ raise TypeError(error_msg)
299
+ places = [sources[item] for item in arguments]
300
+
301
+ def evaluate(t: float, x: Array, p: Array) -> list[float]:
302
+ results = function(t, *((x if is_state else p)[index] for is_state, index in places))
303
+ if not isinstance(results, list):
304
+ error_msg = f'The function of the events or delays of {owner} returns no list of values.'
305
+ raise TypeError(error_msg)
306
+ return [float(value) for value in np.asarray(results, dtype=float)]
307
+
308
+ return evaluate
309
+
310
+ @staticmethod
311
+ def _reset_places(spec: KernelSpec, targets: Sequence[Expression]) -> list[npt.NDArray[np.intp]]:
312
+ """Return the flat indices every target of a reset writes, after checking that each is a state."""
313
+ places = []
314
+ for item in targets:
315
+ reference = spec.references.get(item)
316
+ if (
317
+ reference is None
318
+ or not reference.is_state
319
+ or reference.source not in {ReadKind.SINGLE, ReadKind.MEMBER}
320
+ ):
321
+ error_msg = (
322
+ f'An event of {spec.owner} resets a symbol that is not a state of an element or a group member.'
323
+ )
324
+ raise ValidationError(error_msg)
325
+ places.append(ProblemPass._reset_indices(reference))
326
+ return places
327
+
328
+ @staticmethod
329
+ def _reset_function(
330
+ spec: KernelSpec,
331
+ event: CrossingLaw,
332
+ time: Expression,
333
+ reductions: ReductionScheduleSpec,
334
+ *,
335
+ members: bool = False,
336
+ ) -> Callable[..., Array] | None:
337
+ """Return a function that sets the states an event resets, all from the state before the event.
338
+
339
+ The reset of an event of the members of a group takes the member as a fourth argument, and sets the states of
340
+ that member alone.
341
+ """
342
+ reset = event.reset or {}
343
+ targets = [item for target in reset for item in components_of(target)]
344
+ if not targets:
345
+ return None
346
+ values = [
347
+ SR(item)
348
+ for target, value in reset.items()
349
+ for item in (
350
+ components_of(value) if isinstance(value, FreeModuleElement) else [value] * len(components_of(target))
351
+ )
352
+ ]
353
+ places = ProblemPass._reset_places(spec, targets)
354
+ arguments = sorted(symbols_of(values) - {time}, key=str)
355
+ unknown = [item for item in arguments if spec.references.get(item) is None]
356
+ if unknown:
357
+ error_msg = (
358
+ f'An event of {spec.owner} uses {", ".join(map(str, unknown))}, which the namespace does not hold.'
359
+ )
360
+ raise ValidationError(error_msg)
361
+ reads = [
362
+ (spec.references[item].is_state, ProblemPass._reset_indices(spec.references[item])) for item in arguments
363
+ ]
364
+ function = ExpressionPrinter(time=time, compiled=True).check().prepare(arguments).run(values).code_
365
+ if not callable(function):
366
+ error_msg = f'The printer returns no function of the resets of an event of {spec.owner}.'
367
+ raise TypeError(error_msg)
368
+
369
+ def evaluate(t: float, x: Array, p: Array) -> Sequence[object]:
370
+ q = reductions.extend(t, x, p)
371
+ results = function(t, *((x if is_state else q)[index] for is_state, index in reads))
372
+ if not isinstance(results, list):
373
+ error_msg = f'The function of the resets of an event of {spec.owner} returns no list of values.'
374
+ raise TypeError(error_msg)
375
+ return results
376
+
377
+ def apply(t: float, x: Array, p: Array) -> Array:
378
+ state = x.copy()
379
+ for place, value in zip(places, evaluate(t, x, p), strict=True):
380
+ state[place] = np.broadcast_to(np.asarray(value, dtype=float), place.shape)
381
+ return state
382
+
383
+ def apply_member(t: float, x: Array, p: Array, member: int) -> Array:
384
+ state = x.copy()
385
+ for place, value in zip(places, evaluate(t, x, p), strict=True):
386
+ values = np.ravel(np.asarray(value, dtype=float))
387
+ state[place[member] if place.size > 1 else place] = values[member] if values.size > 1 else values[0]
388
+ return state
389
+
390
+ return apply_member if members else apply
391
+
392
+ @staticmethod
393
+ def _member_guard(
394
+ spec: KernelSpec,
395
+ guard: Expression,
396
+ time: Expression,
397
+ reductions: ReductionScheduleSpec,
398
+ ) -> Callable[[float, Array, Array], Array]:
399
+ """Return a function that gives the value of a guard for every member of a group."""
400
+ arguments = sorted(symbols_of([guard]) - {time}, key=str)
401
+ unknown = [item for item in arguments if spec.references.get(item) is None]
402
+ if unknown:
403
+ error_msg = (
404
+ f'An event of {spec.owner} uses {", ".join(map(str, unknown))}, which the namespace does not hold.'
405
+ )
406
+ raise ValidationError(error_msg)
407
+ reads = [
408
+ (spec.references[item].is_state, ProblemPass._reset_indices(spec.references[item])) for item in arguments
409
+ ]
410
+ function = ExpressionPrinter(time=time, compiled=True).check().prepare(arguments).run([guard]).code_
411
+ if not callable(function):
412
+ error_msg = f'The printer returns no function of the guard of an event of {spec.owner}.'
413
+ raise TypeError(error_msg)
414
+ rows = spec.rows
415
+
416
+ def evaluate(t: float, x: Array, p: Array) -> Array:
417
+ q = reductions.extend(t, x, p)
418
+ results = function(t, *((x if is_state else q)[index] for is_state, index in reads))
419
+ if not isinstance(results, list):
420
+ error_msg = f'The function of the guard of an event of {spec.owner} returns no list of values.'
421
+ raise TypeError(error_msg)
422
+ return np.broadcast_to(np.asarray(results[0], dtype=float), (rows,))
423
+
424
+ return evaluate
425
+
426
+ @staticmethod
427
+ def _reads_members(spec: KernelSpec, guard: Expression) -> bool:
428
+ """Check whether a guard reads the states or parameters of the members of a group."""
429
+ return any(
430
+ reference is not None and reference.source is ReadKind.MEMBER
431
+ for reference in (spec.references.get(item) for item in symbols_of([guard]))
432
+ )
433
+
434
+ @staticmethod
435
+ def _state_conditions_of(expressions: Iterable[object], time: Expression) -> list[Expression]:
436
+ """Return the expressions whose sign switches a law, from conditions and steps that read more than time."""
437
+ found: list[Expression] = []
438
+ stack = [SR(expression) for expression in expressions]
439
+ while stack:
440
+ item = stack.pop()
441
+ operation = item.operator()
442
+ if operation is None:
443
+ continue
444
+ stack.extend(item.operands())
445
+ if operation in RELATIONS:
446
+ left, right = item.operands()
447
+ candidate = left - right
448
+ elif getattr(operation, 'name', lambda: '')() in _SWITCHES:
449
+ candidate = item.operands()[0]
450
+ else:
451
+ continue
452
+ if set(candidate.variables()) - {time} and not any(
453
+ ProblemPass._same_zeros(candidate, other) for other in found
454
+ ):
455
+ found.append(candidate)
456
+ return found
457
+
458
+ @staticmethod
459
+ def _breakpoints_of(expressions: Iterable[object], time: Expression) -> _BreakpointsSpec:
460
+ """Return the times where conditions on time in expressions change, as from step, pulse, and series inputs."""
461
+ fixed: set[float] = set()
462
+ periodic: set[tuple[float, float]] = set()
463
+ unresolved = False
464
+ stack = [SR(expression) for expression in expressions]
465
+ seen: dict[int, list[Expression]] = defaultdict(list)
466
+ while stack:
467
+ item = stack.pop()
468
+ operation = item.operator()
469
+ if operation is None or not item.has(time):
470
+ continue
471
+ twins = seen[hash(item)]
472
+ if any(item.is_trivially_equal(twin) for twin in twins):
473
+ continue
474
+ twins.append(item)
475
+ if operation in RELATIONS:
476
+ left, right = item.operands()
477
+ difference = left - right
478
+ root = ProblemPass._linear_root(difference, time)
479
+ resolved = root is not None or time not in difference.variables()
480
+ if root is not None:
481
+ fixed.add(root)
482
+ for call in BasePass._calls_of(difference, 'mod'):
483
+ argument, period = call.operands()
484
+ zero, rest = ProblemPass._linear_root(argument, time), difference - call
485
+ if zero is not None and period.is_numeric() and rest.is_numeric():
486
+ span = float(period)
487
+ offset = float(-rest)
488
+ periodic.update({(zero, span), (zero + offset, span)})
489
+ resolved = True
490
+ unresolved = unresolved or not resolved
491
+ stack.extend(item.operands())
492
+ return _BreakpointsSpec(tuple(sorted(fixed)), tuple(sorted(periodic)), unresolved=unresolved)
493
+
494
+ @staticmethod
495
+ def _breakpoints_in(
496
+ specs: list[tuple[KernelSpec, list[BaseLaw]]],
497
+ events: list[tuple[KernelSpec, CrossingLaw]],
498
+ time: Expression,
499
+ ) -> _BreakpointsSpec:
500
+ """Return the breakpoints of the time-dependent inputs in every law and event guard.
501
+
502
+ Args:
503
+ specs:
504
+ The laws of every kernel spec.
505
+
506
+ events:
507
+ The events with the kernel specs of their components.
508
+
509
+ time:
510
+ The time symbol.
511
+
512
+ Returns:
513
+ breakpoints:
514
+ The breakpoints.
515
+ """
516
+ expressions: list[object] = []
517
+ for _, laws in specs:
518
+ for law in laws:
519
+ value = law.rate if isinstance(law, JumpLaw) else getattr(law, 'value', None)
520
+ expressions += (
521
+ [item for item in components_of(value) if isinstance(item, Expression)] if value is not None else []
522
+ )
523
+ expressions += [event.guard for _, event in events if not BaseLaw._is_function(event.guard)]
524
+ return ProblemPass._breakpoints_of(expressions, time)
525
+
526
+ @staticmethod
527
+ def _compile_delays(delays: Sequence[_DelayedStateSpec], time: Expression) -> tuple[_DelaySpec, ...]:
528
+ """Return the delays of a system with their delay functions compiled.
529
+
530
+ Args:
531
+ delays:
532
+ The delayed states with their hidden parameters.
533
+
534
+ time:
535
+ The time symbol.
536
+
537
+ Returns:
538
+ delays:
539
+ The compiled delays.
540
+ """
541
+ compiled = []
542
+ for item in delays:
543
+ spec, hidden = item.spec, item.entry
544
+ tau = ProblemPass._scalar_function(
545
+ [item.tau],
546
+ ProblemPass._flat_sources(spec.references, spec.owner),
547
+ time,
548
+ spec.owner,
549
+ )
550
+ compiled.append(
551
+ _DelaySpec(
552
+ parameters=hidden.start + np.arange(hidden.size),
553
+ states=item.states,
554
+ tau=ProblemPass._first_value(tau),
555
+ minimum=item.minimum,
556
+ symbol=item.symbol,
557
+ state=item.state,
558
+ delay=SR(item.tau),
559
+ ),
560
+ )
561
+ return tuple(compiled)
562
+
563
+ @staticmethod
564
+ def _symbolic_value(
565
+ spec: KernelSpec,
566
+ value: object,
567
+ reductions: ReductionScheduleSpec,
568
+ time: Expression,
569
+ ) -> Callable[[float, Array, Array], object]:
570
+ """Return the function of time and both vectors of a symbolic guard or reset next to a function."""
571
+ expression = SR(value)
572
+ arguments = sorted(symbols_of([expression]) - {time}, key=str)
573
+ function = ExpressionPrinter(time=time, compiled=True).check().prepare(arguments).run([expression]).code_
574
+ if not callable(function):
575
+ error_msg = f'The printer returns no function of an event of {spec.owner}.'
576
+ raise TypeError(error_msg)
577
+ reads = [
578
+ (spec.references[item].is_state, ProblemPass._reset_indices(spec.references[item])) for item in arguments
579
+ ]
580
+
581
+ def evaluate(t: float, x: Array, p: Array) -> object:
582
+ q = reductions.extend(t, x, p)
583
+ results = function(t, *((x if is_state else q)[index] for is_state, index in reads))
584
+ if not isinstance(results, list):
585
+ error_msg = f'The function of an event of {spec.owner} returns no list of values.'
586
+ raise TypeError(error_msg)
587
+ return results[0]
588
+
589
+ return evaluate
590
+
591
+ @staticmethod
592
+ def _value_function(
593
+ spec: KernelSpec,
594
+ value: object,
595
+ reductions: ReductionScheduleSpec,
596
+ declarations: DeclarationsSpec,
597
+ ) -> Callable[[float, Array, Array], object]:
598
+ """Return the function of time and both vectors of one guard or reset value of an event."""
599
+ if not BaseLaw._is_function(value):
600
+ return ProblemPass._symbolic_value(spec, value, reductions, declarations.time)
601
+ if isinstance(value, CallSpec) and (value.arguments or value.random or value.vectorized):
602
+ error_msg = (
603
+ f'An event of {spec.owner} has the guard or reset {value!r}. An event takes `f(t, values)` or '
604
+ '`CallSpec(f, relative=True)`, because it reads its values by name and draws nothing.'
605
+ )
606
+ raise ValidationError(error_msg)
607
+ states, parameters = LayoutSpec(tuple(declarations.states)), LayoutSpec(tuple(declarations.parameters))
608
+ relative = isinstance(value, CallSpec) and value.relative
609
+ function = value.function if isinstance(value, CallSpec) else value
610
+ if not callable(function):
611
+ error_msg = f'An event of {spec.owner} calls {function!r}, which is not a function.'
612
+ raise ValidationError(error_msg)
613
+ names = spec._relative_names((*states.names, *parameters.names))
614
+
615
+ def evaluate(t: float, x: Array, p: Array) -> object:
616
+ values = {**states.values(x), **parameters.values(p)}
617
+ return function(t, {name: values[path] for name, path in names.items()} if relative else values)
618
+
619
+ return evaluate
620
+
621
+ @staticmethod
622
+ def _function_event(
623
+ spec: KernelSpec,
624
+ event: CrossingLaw,
625
+ label: str,
626
+ reductions: ReductionScheduleSpec,
627
+ declarations: DeclarationsSpec,
628
+ ) -> EventKernel:
629
+ """Return an event whose guard or reset is a function, with one guard value per member over a group."""
630
+ guard = ProblemPass._value_function(spec, event.guard, reductions, declarations)
631
+ reset = event.reset or {}
632
+ targets = list(reset)
633
+ places = ProblemPass._reset_places(spec, targets)
634
+ values = [ProblemPass._value_function(spec, reset[item], reductions, declarations) for item in targets]
635
+ rows = spec.rows if spec.rows > 1 else 0
636
+
637
+ def guard_values(t: float, x: Array, p: Array) -> Array | float:
638
+ found = np.asarray(guard(t, x, p), dtype=float)
639
+ return np.broadcast_to(found, (rows,)) if rows else float(found)
640
+
641
+ def apply(t: float, x: Array, p: Array, member: int | None = None) -> Array:
642
+ state = x.copy()
643
+ for place, value in zip(places, values, strict=True):
644
+ found = np.broadcast_to(np.asarray(value(t, x, p), dtype=float), place.shape)
645
+ if member is None or place.size == 1:
646
+ state[place] = found
647
+ else:
648
+ state[place[member]] = found[member]
649
+ return state
650
+
651
+ return (
652
+ EventKernel(
653
+ label,
654
+ guard_values,
655
+ apply if targets else None,
656
+ int(event.direction),
657
+ bool(event.terminal),
658
+ members=rows,
659
+ )
660
+ .check()
661
+ .prepare()
662
+ )
663
+
664
+ @staticmethod
665
+ def _compile_events(
666
+ events: list[tuple[KernelSpec, CrossingLaw]],
667
+ time: Expression,
668
+ reductions: ReductionScheduleSpec,
669
+ declarations: DeclarationsSpec,
670
+ ) -> tuple[EventKernel, ...]:
671
+ """Return the events of a system compiled into guard and reset functions of the state vector.
672
+
673
+ Args:
674
+ events:
675
+ The events with the kernel specs of their components.
676
+
677
+ time:
678
+ The time symbol.
679
+
680
+ reductions:
681
+ The reductions the guards and resets read.
682
+
683
+ declarations:
684
+ The layout of the variables that functions of guards and resets read.
685
+
686
+ Returns:
687
+ events:
688
+ The compiled events.
689
+ """
690
+ compiled = []
691
+ counts = Counter(spec.owner for spec, _ in events)
692
+ positions: Counter[str] = Counter()
693
+ for spec, event in events:
694
+ position = positions[spec.owner]
695
+ positions[spec.owner] += 1
696
+ label = event.label or (spec.owner if counts[spec.owner] == 1 else f'{spec.owner}:{position}')
697
+ if BaseLaw._is_function(event.guard) or any(map(BaseLaw._is_function, (event.reset or {}).values())):
698
+ compiled.append(ProblemPass._function_event(spec, event, label, reductions, declarations))
699
+ continue
700
+ if ProblemPass._reads_members(spec, SR(event.guard)):
701
+ compiled.append(
702
+ EventKernel(
703
+ label,
704
+ ProblemPass._member_guard(spec, SR(event.guard), time, reductions),
705
+ ProblemPass._reset_function(spec, event, time, reductions, members=True),
706
+ int(event.direction),
707
+ bool(event.terminal),
708
+ members=spec.rows,
709
+ )
710
+ .check()
711
+ .prepare(),
712
+ )
713
+ continue
714
+ sources = ProblemPass._flat_sources(spec.references, spec.owner)
715
+ guard = ProblemPass._scalar_function([event.guard], sources, time, spec.owner)
716
+ compiled.append(
717
+ EventKernel(
718
+ label,
719
+ ProblemPass._reduced_guard(guard, reductions),
720
+ ProblemPass._reset_function(spec, event, time, reductions),
721
+ int(event.direction),
722
+ bool(event.terminal),
723
+ )
724
+ .check()
725
+ .prepare(),
726
+ )
727
+ return tuple(compiled)
728
+
729
+ @staticmethod
730
+ def _hidden_events(
731
+ specs: list[tuple[KernelSpec, list[BaseLaw]]],
732
+ time: Expression,
733
+ reductions: ReductionScheduleSpec,
734
+ ) -> tuple[EventKernel, ...]:
735
+ """Return one hidden event per condition on the states of single components that switches a law of a flow.
736
+
737
+ Args:
738
+ specs:
739
+ The laws of every kernel spec.
740
+
741
+ time:
742
+ The time symbol.
743
+
744
+ reductions:
745
+ The reductions the conditions read.
746
+
747
+ Returns:
748
+ events:
749
+ The hidden events.
750
+ """
751
+ compiled = []
752
+ for spec, laws in specs:
753
+ sources = ProblemPass._flat_sources(spec.references, spec.owner)
754
+ values = [
755
+ value
756
+ for law in laws
757
+ if isinstance(law, BaseLaw) and not isinstance(law, JumpLaw)
758
+ for value in law._get_values(include=('value', 'lhs', 'rhs'))
759
+ if isinstance(value, Expression)
760
+ ]
761
+ for index, condition in enumerate(ProblemPass._state_conditions_of(values, time)):
762
+ if not set(condition.variables()) - {time} <= set(sources):
763
+ continue
764
+ guard = ProblemPass._scalar_function([condition], sources, time, spec.owner)
765
+ label = f'{spec.owner}:switch:{index}'
766
+ compiled.append(
767
+ EventKernel(
768
+ label,
769
+ ProblemPass._reduced_guard(guard, reductions),
770
+ None,
771
+ 0,
772
+ False,
773
+ hidden=True,
774
+ )
775
+ .check()
776
+ .prepare(),
777
+ )
778
+ return tuple(compiled)
779
+
780
+ @staticmethod
781
+ def _history(blocks: list[BlockSpec]) -> dict[str, object]:
782
+ """Return the history every state declares, by the name of its layout entry."""
783
+ history = {}
784
+ for block in blocks:
785
+ if block.node.interaction or block.node.is_agent:
786
+ continue
787
+ declarations = declarations_of(block.node.component_type, VariableKind.STATE)
788
+ for variable, entry in block.entries.items():
789
+ declaration = declarations.get(variable)
790
+ if declaration is not None and declaration.history is not None:
791
+ history[entry.name] = declaration.history
792
+ return history
793
+
794
+ @staticmethod
795
+ def _visual_of(node: NodeSpec) -> VisualSpec:
796
+ """Return the visual of an element or a group: its own visual when it sets one, and its default otherwise."""
797
+ element = node.component
798
+ if element.visual is not None:
799
+ return element.visual
800
+ prepared = 'default_visual_' in vars(element)
801
+ default: VisualSpec = (element if prepared else element.check().prepare(node.space)).default_visual_
802
+ return default