scikit-complexity 0.2.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scikit_complexity-0.2.0.dist-info/METADATA +317 -0
- scikit_complexity-0.2.0.dist-info/RECORD +1748 -0
- scikit_complexity-0.2.0.dist-info/WHEEL +4 -0
- scikit_complexity-0.2.0.dist-info/entry_points.txt +4 -0
- scikit_complexity-0.2.0.dist-info/licenses/LICENSE +21 -0
- skcomplex/__init__.py +1 -0
- skcomplex/analysis/__init__.py +101 -0
- skcomplex/analysis/_alignment.py +263 -0
- skcomplex/analysis/_automata.py +658 -0
- skcomplex/analysis/_base.py +841 -0
- skcomplex/analysis/_clusters.py +298 -0
- skcomplex/analysis/_coarse_grain.py +183 -0
- skcomplex/analysis/_collapse.py +318 -0
- skcomplex/analysis/_complexity.py +129 -0
- skcomplex/analysis/_computational_mechanics.py +220 -0
- skcomplex/analysis/_correlation.py +364 -0
- skcomplex/analysis/_defects.py +111 -0
- skcomplex/analysis/_discovery.py +101 -0
- skcomplex/analysis/_displacement.py +135 -0
- skcomplex/analysis/_distribution.py +327 -0
- skcomplex/analysis/_domains.py +220 -0
- skcomplex/analysis/_embedding.py +235 -0
- skcomplex/analysis/_emergence.py +503 -0
- skcomplex/analysis/_entropy.py +425 -0
- skcomplex/analysis/_ergodicity.py +228 -0
- skcomplex/analysis/_events.py +301 -0
- skcomplex/analysis/_fit.py +368 -0
- skcomplex/analysis/_groups.py +205 -0
- skcomplex/analysis/_information.py +488 -0
- skcomplex/analysis/_invariants.py +409 -0
- skcomplex/analysis/_irreversibility.py +421 -0
- skcomplex/analysis/_kramers_moyal.py +104 -0
- skcomplex/analysis/_large_deviations.py +378 -0
- skcomplex/analysis/_linearization.py +231 -0
- skcomplex/analysis/_local_information.py +166 -0
- skcomplex/analysis/_loops.py +394 -0
- skcomplex/analysis/_lyapunov.py +342 -0
- skcomplex/analysis/_markov.py +303 -0
- skcomplex/analysis/_mode_decomposition.py +209 -0
- skcomplex/analysis/_motifs.py +239 -0
- skcomplex/analysis/_neighbors.py +303 -0
- skcomplex/analysis/_networks.py +286 -0
- skcomplex/analysis/_operator.py +312 -0
- skcomplex/analysis/_partial_information.py +118 -0
- skcomplex/analysis/_passage.py +244 -0
- skcomplex/analysis/_recurrence.py +202 -0
- skcomplex/analysis/_reservoirs.py +387 -0
- skcomplex/analysis/_rolling.py +168 -0
- skcomplex/analysis/_scaling.py +370 -0
- skcomplex/analysis/_sections.py +225 -0
- skcomplex/analysis/_signatures.py +250 -0
- skcomplex/analysis/_sparse_identification.py +398 -0
- skcomplex/analysis/_spectrum.py +164 -0
- skcomplex/analysis/_stability.py +547 -0
- skcomplex/analysis/_surrogates.py +127 -0
- skcomplex/analysis/_symbolic.py +639 -0
- skcomplex/analysis/types.py +43 -0
- skcomplex/base.py +159 -0
- skcomplex/core/__init__.py +1 -0
- skcomplex/core/base.py +150 -0
- skcomplex/core/elements/__init__.py +21 -0
- skcomplex/core/elements/_base.py +84 -0
- skcomplex/core/elements/_compartment.py +52 -0
- skcomplex/core/elements/_density.py +52 -0
- skcomplex/core/elements/_element.py +80 -0
- skcomplex/core/elements/_field.py +192 -0
- skcomplex/core/elements/_group.py +241 -0
- skcomplex/core/elements/_lattice.py +115 -0
- skcomplex/core/elements/_point.py +66 -0
- skcomplex/core/interactions/__init__.py +89 -0
- skcomplex/core/interactions/_advection.py +134 -0
- skcomplex/core/interactions/_base.py +361 -0
- skcomplex/core/interactions/_cascade.py +195 -0
- skcomplex/core/interactions/_choice.py +320 -0
- skcomplex/core/interactions/_conservation.py +164 -0
- skcomplex/core/interactions/_coupling.py +741 -0
- skcomplex/core/interactions/_crossing.py +136 -0
- skcomplex/core/interactions/_diffusion.py +99 -0
- skcomplex/core/interactions/_encounter.py +201 -0
- skcomplex/core/interactions/_euler_lagrange.py +183 -0
- skcomplex/core/interactions/_evolution.py +520 -0
- skcomplex/core/interactions/_feedback.py +79 -0
- skcomplex/core/interactions/_gradient.py +293 -0
- skcomplex/core/interactions/_grouping.py +399 -0
- skcomplex/core/interactions/_hamiltonian.py +191 -0
- skcomplex/core/interactions/_hyperedge.py +96 -0
- skcomplex/core/interactions/_imitation.py +357 -0
- skcomplex/core/interactions/_impulse.py +133 -0
- skcomplex/core/interactions/_interaction.py +58 -0
- skcomplex/core/interactions/_jump.py +201 -0
- skcomplex/core/interactions/_life_cycle.py +424 -0
- skcomplex/core/interactions/_local_rule.py +134 -0
- skcomplex/core/interactions/_map.py +239 -0
- skcomplex/core/interactions/_matching.py +701 -0
- skcomplex/core/interactions/_movement.py +377 -0
- skcomplex/core/interactions/_neighbor.py +88 -0
- skcomplex/core/interactions/_optimization.py +206 -0
- skcomplex/core/interactions/_pair.py +82 -0
- skcomplex/core/interactions/_pair_coupling.py +169 -0
- skcomplex/core/interactions/_rate.py +240 -0
- skcomplex/core/interactions/_reaction.py +466 -0
- skcomplex/core/interactions/_reinforcement.py +226 -0
- skcomplex/core/interactions/_relaxation.py +103 -0
- skcomplex/core/interactions/_sampling.py +177 -0
- skcomplex/core/interactions/_satisfiability.py +145 -0
- skcomplex/core/interactions/_sign_adjustment.py +222 -0
- skcomplex/core/interactions/_topology.py +215 -0
- skcomplex/core/interactions/_training.py +184 -0
- skcomplex/core/interactions/_transfer.py +669 -0
- skcomplex/core/interactions/_transition.py +427 -0
- skcomplex/core/laws/__init__.py +60 -0
- skcomplex/core/laws/_base.py +194 -0
- skcomplex/core/laws/_bilinear.py +91 -0
- skcomplex/core/laws/_boundary.py +59 -0
- skcomplex/core/laws/_cascade.py +79 -0
- skcomplex/core/laws/_crossing.py +87 -0
- skcomplex/core/laws/_dissipator.py +79 -0
- skcomplex/core/laws/_drive.py +56 -0
- skcomplex/core/laws/_emission.py +81 -0
- skcomplex/core/laws/_encounter.py +96 -0
- skcomplex/core/laws/_equation.py +105 -0
- skcomplex/core/laws/_extremal.py +94 -0
- skcomplex/core/laws/_flux.py +108 -0
- skcomplex/core/laws/_fractional_noise.py +65 -0
- skcomplex/core/laws/_generator.py +66 -0
- skcomplex/core/laws/_gradient_step.py +89 -0
- skcomplex/core/laws/_jump.py +137 -0
- skcomplex/core/laws/_local_rule.py +92 -0
- skcomplex/core/laws/_match.py +321 -0
- skcomplex/core/laws/_noise.py +125 -0
- skcomplex/core/laws/_rate.py +82 -0
- skcomplex/core/laws/_rule.py +82 -0
- skcomplex/core/laws/_sample.py +65 -0
- skcomplex/core/laws/_transfer.py +165 -0
- skcomplex/core/laws/_transition.py +77 -0
- skcomplex/core/laws/_update.py +121 -0
- skcomplex/core/laws/utils/__init__.py +142 -0
- skcomplex/core/laws/utils/_agents.py +127 -0
- skcomplex/core/laws/utils/_components.py +63 -0
- skcomplex/core/laws/utils/_conditions.py +198 -0
- skcomplex/core/laws/utils/_contractions.py +74 -0
- skcomplex/core/laws/utils/_delays.py +170 -0
- skcomplex/core/laws/utils/_history.py +167 -0
- skcomplex/core/laws/utils/_local_operators.py +68 -0
- skcomplex/core/laws/utils/_lookups.py +40 -0
- skcomplex/core/laws/utils/_moments.py +122 -0
- skcomplex/core/laws/utils/_operators.py +237 -0
- skcomplex/core/laws/utils/_phase.py +126 -0
- skcomplex/core/laws/utils/_pointwise.py +160 -0
- skcomplex/core/laws/utils/_reductions.py +942 -0
- skcomplex/core/laws/utils/_signals.py +214 -0
- skcomplex/core/laws/utils/_tables.py +4 -0
- skcomplex/core/laws/utils/_tensors.py +235 -0
- skcomplex/core/spaces/__init__.py +52 -0
- skcomplex/core/spaces/_adjacency.py +34 -0
- skcomplex/core/spaces/_base.py +218 -0
- skcomplex/core/spaces/_box.py +41 -0
- skcomplex/core/spaces/_cayley.py +352 -0
- skcomplex/core/spaces/_cone.py +65 -0
- skcomplex/core/spaces/_continuous.py +93 -0
- skcomplex/core/spaces/_continuous_time.py +27 -0
- skcomplex/core/spaces/_discrete_time.py +53 -0
- skcomplex/core/spaces/_generator.py +51 -0
- skcomplex/core/spaces/_lattice.py +194 -0
- skcomplex/core/spaces/_lattice_neighborhood.py +50 -0
- skcomplex/core/spaces/_memory.py +45 -0
- skcomplex/core/spaces/_mesh.py +71 -0
- skcomplex/core/spaces/_moore.py +49 -0
- skcomplex/core/spaces/_nearest.py +41 -0
- skcomplex/core/spaces/_network.py +256 -0
- skcomplex/core/spaces/_phase.py +136 -0
- skcomplex/core/spaces/_radius.py +40 -0
- skcomplex/core/spaces/_static_time.py +34 -0
- skcomplex/core/spaces/_triangular.py +37 -0
- skcomplex/core/spaces/_von_neumann.py +51 -0
- skcomplex/core/specs/__init__.py +25 -0
- skcomplex/core/specs/_census_record_spec.py +72 -0
- skcomplex/core/specs/_census_spec.py +40 -0
- skcomplex/core/specs/_compiled_agents_spec.py +62 -0
- skcomplex/core/specs/_compiled_element_spec.py +59 -0
- skcomplex/core/specs/_compiled_interaction_spec.py +33 -0
- skcomplex/core/specs/_lattice_context_spec.py +40 -0
- skcomplex/core/specs/_lattice_state_spec.py +49 -0
- skcomplex/core/specs/_node_spec.py +64 -0
- skcomplex/core/specs/_operator_view_spec.py +135 -0
- skcomplex/core/specs/_scenario_spec.py +45 -0
- skcomplex/core/specs/_subsystem_spec.py +24 -0
- skcomplex/core/system.py +140 -0
- skcomplex/core/types.py +249 -0
- skcomplex/engine/__init__.py +5 -0
- skcomplex/engine/_utils.py +278 -0
- skcomplex/engine/backends/__init__.py +13 -0
- skcomplex/engine/backends/_base.py +329 -0
- skcomplex/engine/backends/_jax.py +285 -0
- skcomplex/engine/backends/_numba.py +601 -0
- skcomplex/engine/backends/_numba_components.py +67 -0
- skcomplex/engine/backends/_numba_loops.py +163 -0
- skcomplex/engine/backends/_numba_neighbours.py +435 -0
- skcomplex/engine/backends/_numba_printer.py +1023 -0
- skcomplex/engine/backends/_numba_stencils.py +66 -0
- skcomplex/engine/backends/_numpy.py +215 -0
- skcomplex/engine/compile/__init__.py +27 -0
- skcomplex/engine/compile/_base.py +582 -0
- skcomplex/engine/compile/_bound_renewal_spec.py +47 -0
- skcomplex/engine/compile/_compilation.py +351 -0
- skcomplex/engine/compile/_compile.py +100 -0
- skcomplex/engine/compile/_complex.py +216 -0
- skcomplex/engine/compile/_draw_lowering.py +373 -0
- skcomplex/engine/compile/_field_lowering.py +1668 -0
- skcomplex/engine/compile/_flows.py +691 -0
- skcomplex/engine/compile/_forms.py +48 -0
- skcomplex/engine/compile/_laws.py +42 -0
- skcomplex/engine/compile/_learning_compiler.py +481 -0
- skcomplex/engine/compile/_member_reductions.py +206 -0
- skcomplex/engine/compile/_members.py +244 -0
- skcomplex/engine/compile/_observables.py +940 -0
- skcomplex/engine/compile/_observer.py +185 -0
- skcomplex/engine/compile/_pass_compiler.py +1534 -0
- skcomplex/engine/compile/_probe.py +78 -0
- skcomplex/engine/compile/_renewal_law.py +70 -0
- skcomplex/engine/compile/passes/__init__.py +34 -0
- skcomplex/engine/compile/passes/_agents.py +111 -0
- skcomplex/engine/compile/passes/_agents_problem.py +143 -0
- skcomplex/engine/compile/passes/_census.py +808 -0
- skcomplex/engine/compile/passes/_check_fractional_noise.py +107 -0
- skcomplex/engine/compile/passes/_collect.py +31 -0
- skcomplex/engine/compile/passes/_compile_encounters.py +301 -0
- skcomplex/engine/compile/passes/_complex.py +198 -0
- skcomplex/engine/compile/passes/_conserved_noise.py +224 -0
- skcomplex/engine/compile/passes/_core.py +116 -0
- skcomplex/engine/compile/passes/_declare_renewals.py +84 -0
- skcomplex/engine/compile/passes/_draws.py +29 -0
- skcomplex/engine/compile/passes/_encounter_functions.py +60 -0
- skcomplex/engine/compile/passes/_encounter_jacobian.py +25 -0
- skcomplex/engine/compile/passes/_encounter_problem.py +32 -0
- skcomplex/engine/compile/passes/_events.py +204 -0
- skcomplex/engine/compile/passes/_expand_flows.py +32 -0
- skcomplex/engine/compile/passes/_field_functions.py +647 -0
- skcomplex/engine/compile/passes/_field_jacobian.py +38 -0
- skcomplex/engine/compile/passes/_field_problem.py +106 -0
- skcomplex/engine/compile/passes/_flatten.py +339 -0
- skcomplex/engine/compile/passes/_flows_problem.py +29 -0
- skcomplex/engine/compile/passes/_form.py +82 -0
- skcomplex/engine/compile/passes/_fractional_form.py +172 -0
- skcomplex/engine/compile/passes/_fractional_problem.py +91 -0
- skcomplex/engine/compile/passes/_functions.py +485 -0
- skcomplex/engine/compile/passes/_hilbert_space_error.py +10 -0
- skcomplex/engine/compile/passes/_hyperedges.py +598 -0
- skcomplex/engine/compile/passes/_jacobian.py +38 -0
- skcomplex/engine/compile/passes/_kernels.py +407 -0
- skcomplex/engine/compile/passes/_lattices.py +818 -0
- skcomplex/engine/compile/passes/_layout.py +667 -0
- skcomplex/engine/compile/passes/_lower_fields.py +225 -0
- skcomplex/engine/compile/passes/_lower_flows.py +28 -0
- skcomplex/engine/compile/passes/_markov.py +329 -0
- skcomplex/engine/compile/passes/_mask_requests.py +121 -0
- skcomplex/engine/compile/passes/_members.py +30 -0
- skcomplex/engine/compile/passes/_noise.py +196 -0
- skcomplex/engine/compile/passes/_operator_compiler.py +843 -0
- skcomplex/engine/compile/passes/_orders.py +409 -0
- skcomplex/engine/compile/passes/_owners.py +90 -0
- skcomplex/engine/compile/passes/_particles.py +69 -0
- skcomplex/engine/compile/passes/_plan.py +130 -0
- skcomplex/engine/compile/passes/_problem.py +802 -0
- skcomplex/engine/compile/passes/_reduction_lowering.py +1193 -0
- skcomplex/engine/compile/passes/_reductions.py +84 -0
- skcomplex/engine/compile/passes/_renewal_problem.py +357 -0
- skcomplex/engine/compile/passes/_request_jumps.py +51 -0
- skcomplex/engine/compile/passes/_residences.py +140 -0
- skcomplex/engine/compile/passes/_rows.py +162 -0
- skcomplex/engine/compile/passes/_set_renewals_apart.py +29 -0
- skcomplex/engine/compile/passes/_set_rules_apart.py +28 -0
- skcomplex/engine/compile/passes/_specs.py +1317 -0
- skcomplex/engine/compile/passes/_split_requests.py +44 -0
- skcomplex/engine/compile/passes/_topology_functions.py +265 -0
- skcomplex/engine/compile/passes/_topology_problem.py +27 -0
- skcomplex/engine/compile/passes/_towards.py +66 -0
- skcomplex/engine/compile/passes/_unpack_matches.py +29 -0
- skcomplex/engine/compile/passes/_unpack_renewals.py +41 -0
- skcomplex/engine/problems/__init__.py +61 -0
- skcomplex/engine/problems/_base.py +150 -0
- skcomplex/engine/problems/_base_problem_spec.py +153 -0
- skcomplex/engine/problems/_block_spec.py +48 -0
- skcomplex/engine/problems/_born_spec.py +24 -0
- skcomplex/engine/problems/_cascade_kernel.py +134 -0
- skcomplex/engine/problems/_collision_kernel.py +147 -0
- skcomplex/engine/problems/_compiled_delay_spec.py +21 -0
- skcomplex/engine/problems/_compiled_request_spec.py +46 -0
- skcomplex/engine/problems/_control_problem_spec.py +90 -0
- skcomplex/engine/problems/_declarations_spec.py +126 -0
- skcomplex/engine/problems/_delayed_state_spec.py +50 -0
- skcomplex/engine/problems/_diffusive_limit_spec.py +50 -0
- skcomplex/engine/problems/_draw_kernel.py +128 -0
- skcomplex/engine/problems/_drive_kernel.py +65 -0
- skcomplex/engine/problems/_dynamics_spec.py +28 -0
- skcomplex/engine/problems/_edge_row_search.py +78 -0
- skcomplex/engine/problems/_edge_search.py +64 -0
- skcomplex/engine/problems/_encounter_kernel.py +200 -0
- skcomplex/engine/problems/_event_kernel.py +70 -0
- skcomplex/engine/problems/_expression_printer.py +410 -0
- skcomplex/engine/problems/_extremal_kernel.py +125 -0
- skcomplex/engine/problems/_field_operator_kernel.py +105 -0
- skcomplex/engine/problems/_finite_volume_kernel.py +423 -0
- skcomplex/engine/problems/_flow_term_spec.py +45 -0
- skcomplex/engine/problems/_frame_spec.py +105 -0
- skcomplex/engine/problems/_jacobian_kernel.py +575 -0
- skcomplex/engine/problems/_kernel_spec.py +130 -0
- skcomplex/engine/problems/_kinetic_problem_spec.py +23 -0
- skcomplex/engine/problems/_law_kernel.py +604 -0
- skcomplex/engine/problems/_learning_problem_spec.py +67 -0
- skcomplex/engine/problems/_linear_term_spec.py +50 -0
- skcomplex/engine/problems/_loop_term_spec.py +44 -0
- skcomplex/engine/problems/_lowered_kernels_spec.py +59 -0
- skcomplex/engine/problems/_markov_kernel.py +68 -0
- skcomplex/engine/problems/_metric_search.py +155 -0
- skcomplex/engine/problems/_monte_carlo_kernel.py +213 -0
- skcomplex/engine/problems/_neighborhood_kernel.py +594 -0
- skcomplex/engine/problems/_noise_term_spec.py +26 -0
- skcomplex/engine/problems/_observed_spec.py +22 -0
- skcomplex/engine/problems/_operator_kernel.py +102 -0
- skcomplex/engine/problems/_operator_lowering.py +323 -0
- skcomplex/engine/problems/_operator_problem_spec.py +138 -0
- skcomplex/engine/problems/_output_spec.py +78 -0
- skcomplex/engine/problems/_pair_search.py +86 -0
- skcomplex/engine/problems/_partials_spec.py +27 -0
- skcomplex/engine/problems/_partition_spec.py +39 -0
- skcomplex/engine/problems/_printed_spec.py +24 -0
- skcomplex/engine/problems/_problem_functions_spec.py +102 -0
- skcomplex/engine/problems/_problem_spec.py +365 -0
- skcomplex/engine/problems/_random_stream.py +49 -0
- skcomplex/engine/problems/_record_spec.py +22 -0
- skcomplex/engine/problems/_recorded_spec.py +21 -0
- skcomplex/engine/problems/_reduction_kernel.py +254 -0
- skcomplex/engine/problems/_reduction_schedule_spec.py +97 -0
- skcomplex/engine/problems/_reference_spec.py +114 -0
- skcomplex/engine/problems/_relation_spec.py +29 -0
- skcomplex/engine/problems/_renewal_kernel.py +250 -0
- skcomplex/engine/problems/_request_spec.py +27 -0
- skcomplex/engine/problems/_rule_kernel.py +227 -0
- skcomplex/engine/problems/_set_symbol_spec.py +28 -0
- skcomplex/engine/problems/_source_loader.py +113 -0
- skcomplex/engine/problems/_static_search.py +42 -0
- skcomplex/engine/problems/_steps.py +39 -0
- skcomplex/engine/problems/_sweep_spec.py +26 -0
- skcomplex/engine/problems/_symmetry_spec.py +29 -0
- skcomplex/engine/problems/_too_dense.py +8 -0
- skcomplex/engine/problems/_topology_kernel.py +589 -0
- skcomplex/engine/problems/_transfer_network.py +4 -0
- skcomplex/engine/problems/_transfer_network_spec.py +50 -0
- skcomplex/engine/problems/_transfer_state_spec.py +68 -0
- skcomplex/engine/runtime/__init__.py +22 -0
- skcomplex/engine/runtime/_as_fast_as_possible.py +17 -0
- skcomplex/engine/runtime/_base.py +137 -0
- skcomplex/engine/runtime/_conservation.py +125 -0
- skcomplex/engine/runtime/_invariants.py +100 -0
- skcomplex/engine/runtime/_real_time.py +55 -0
- skcomplex/engine/runtime/_recorder.py +84 -0
- skcomplex/engine/runtime/_simulations.py +665 -0
- skcomplex/engine/runtime/_trajectories.py +314 -0
- skcomplex/engine/solvers/__init__.py +95 -0
- skcomplex/engine/solvers/_base.py +372 -0
- skcomplex/engine/solvers/_caputo.py +194 -0
- skcomplex/engine/solvers/_collocation.py +334 -0
- skcomplex/engine/solvers/_convolution.py +155 -0
- skcomplex/engine/solvers/_cosimulation.py +400 -0
- skcomplex/engine/solvers/_crank_nicolson.py +32 -0
- skcomplex/engine/solvers/_defaults.py +34 -0
- skcomplex/engine/solvers/_etdrk4.py +86 -0
- skcomplex/engine/solvers/_euler_maruyama.py +161 -0
- skcomplex/engine/solvers/_event_locator.py +249 -0
- skcomplex/engine/solvers/_external.py +94 -0
- skcomplex/engine/solvers/_fractional_abm.py +126 -0
- skcomplex/engine/solvers/_fractional_euler_maruyama.py +322 -0
- skcomplex/engine/solvers/_gillespie.py +135 -0
- skcomplex/engine/solvers/_gradient_descent.py +353 -0
- skcomplex/engine/solvers/_grunwald_letnikov.py +83 -0
- skcomplex/engine/solvers/_heun.py +89 -0
- skcomplex/engine/solvers/_history.py +184 -0
- skcomplex/engine/solvers/_horizon_error.py +10 -0
- skcomplex/engine/solvers/_imex2.py +40 -0
- skcomplex/engine/solvers/_imex_euler.py +35 -0
- skcomplex/engine/solvers/_jump_trajectories.py +98 -0
- skcomplex/engine/solvers/_kinetics.py +242 -0
- skcomplex/engine/solvers/_l1.py +91 -0
- skcomplex/engine/solvers/_lammps.py +745 -0
- skcomplex/engine/solvers/_lammps_fix_spec.py +41 -0
- skcomplex/engine/solvers/_lattice.py +79 -0
- skcomplex/engine/solvers/_lindblad.py +70 -0
- skcomplex/engine/solvers/_maps.py +105 -0
- skcomplex/engine/solvers/_mesa.py +1624 -0
- skcomplex/engine/solvers/_milstein.py +93 -0
- skcomplex/engine/solvers/_monte_carlo.py +43 -0
- skcomplex/engine/solvers/_operator.py +212 -0
- skcomplex/engine/solvers/_optimal_control.py +368 -0
- skcomplex/engine/solvers/_pontryagin.py +298 -0
- skcomplex/engine/solvers/_renewal.py +90 -0
- skcomplex/engine/solvers/_renewals.py +190 -0
- skcomplex/engine/solvers/_rk4.py +263 -0
- skcomplex/engine/solvers/_root.py +176 -0
- skcomplex/engine/solvers/_rows.py +49 -0
- skcomplex/engine/solvers/_scipy_ode.py +602 -0
- skcomplex/engine/solvers/_sde.py +164 -0
- skcomplex/engine/solvers/_semi_lagrangian.py +213 -0
- skcomplex/engine/solvers/_solver.py +159 -0
- skcomplex/engine/solvers/_split.py +394 -0
- skcomplex/engine/solvers/_ssprk.py +147 -0
- skcomplex/engine/solvers/_strang_splitting.py +178 -0
- skcomplex/engine/solvers/_unitary.py +68 -0
- skcomplex/engine/solvers/_velocity_verlet.py +171 -0
- skcomplex/engine/solvers/_yoshida4.py +242 -0
- skcomplex/engine/types.py +90 -0
- skcomplex/engine/viz/__init__.py +35 -0
- skcomplex/engine/viz/_agents.py +223 -0
- skcomplex/engine/viz/_axes.py +146 -0
- skcomplex/engine/viz/_base.py +365 -0
- skcomplex/engine/viz/_bodies.py +334 -0
- skcomplex/engine/viz/_cayley.py +133 -0
- skcomplex/engine/viz/_expectation.py +208 -0
- skcomplex/engine/viz/_histograms.py +218 -0
- skcomplex/engine/viz/_images.py +307 -0
- skcomplex/engine/viz/_matrices.py +141 -0
- skcomplex/engine/viz/_meshes.py +149 -0
- skcomplex/engine/viz/_points.py +238 -0
- skcomplex/engine/viz/_rerun.py +527 -0
- skcomplex/engine/viz/_rings.py +127 -0
- skcomplex/engine/viz/_scalars.py +129 -0
- skcomplex/engine/viz/_sites.py +228 -0
- skcomplex/errors.py +112 -0
- skcomplex/experiments/__init__.py +36 -0
- skcomplex/experiments/_base.py +373 -0
- skcomplex/experiments/_basin_stability.py +153 -0
- skcomplex/experiments/_calibration.py +194 -0
- skcomplex/experiments/_experiment.py +327 -0
- skcomplex/experiments/_grid.py +36 -0
- skcomplex/experiments/_latin_hypercube.py +44 -0
- skcomplex/experiments/_morris.py +50 -0
- skcomplex/experiments/_one_at_a_time.py +28 -0
- skcomplex/experiments/_orbit_diagram.py +146 -0
- skcomplex/experiments/_random.py +44 -0
- skcomplex/experiments/_results.py +148 -0
- skcomplex/experiments/_rows.py +45 -0
- skcomplex/experiments/_saltelli.py +50 -0
- skcomplex/experiments/_sensitivity.py +122 -0
- skcomplex/experiments/_sobol.py +43 -0
- skcomplex/experiments/specs/__init__.py +1 -0
- skcomplex/experiments/specs/_task_spec.py +78 -0
- skcomplex/experiments/types.py +14 -0
- skcomplex/models/__init__.py +18 -0
- skcomplex/models/_catalog.py +243 -0
- skcomplex/models/_model_catalog.py +270 -0
- skcomplex/models/_model_entry.py +170 -0
- skcomplex/models/_model_listing.py +38 -0
- skcomplex/models/biology/__init__.py +1 -0
- skcomplex/models/biology/collective_behaviour/__init__.py +48 -0
- skcomplex/models/biology/collective_behaviour/_alarm.py +99 -0
- skcomplex/models/biology/collective_behaviour/_ant.py +101 -0
- skcomplex/models/biology/collective_behaviour/_ant_view.py +24 -0
- skcomplex/models/biology/collective_behaviour/_boid.py +104 -0
- skcomplex/models/biology/collective_behaviour/_boid_view.py +25 -0
- skcomplex/models/biology/collective_behaviour/_branch.py +41 -0
- skcomplex/models/biology/collective_behaviour/_decisions.py +149 -0
- skcomplex/models/biology/collective_behaviour/_flight.py +52 -0
- skcomplex/models/biology/collective_behaviour/_flocking.py +75 -0
- skcomplex/models/biology/collective_behaviour/_flocks.py +169 -0
- skcomplex/models/biology/collective_behaviour/_foraging.py +232 -0
- skcomplex/models/biology/collective_behaviour/_ground.py +67 -0
- skcomplex/models/biology/collective_behaviour/_leadership.py +207 -0
- skcomplex/models/biology/collective_behaviour/_morse_potential.py +87 -0
- skcomplex/models/biology/collective_behaviour/_pheromone.py +55 -0
- skcomplex/models/biology/collective_behaviour/_rats.py +41 -0
- skcomplex/models/biology/collective_behaviour/_schooling.py +102 -0
- skcomplex/models/biology/collective_behaviour/_self_propulsion.py +64 -0
- skcomplex/models/biology/collective_behaviour/_shoal_member_view.py +25 -0
- skcomplex/models/biology/collective_behaviour/_swimming.py +66 -0
- skcomplex/models/biology/collective_behaviour/_trail_choice.py +105 -0
- skcomplex/models/biology/collective_behaviour/_trails.py +245 -0
- skcomplex/models/biology/collective_behaviour/_walker.py +97 -0
- skcomplex/models/biology/collective_behaviour/_walker_view.py +23 -0
- skcomplex/models/biology/common/__init__.py +3 -0
- skcomplex/models/biology/common/excitable/__init__.py +7 -0
- skcomplex/models/biology/common/excitable/_fitzhugh_nagumo.py +121 -0
- skcomplex/models/biology/common/kinetics/__init__.py +7 -0
- skcomplex/models/biology/common/kinetics/_michaelis_menten.py +137 -0
- skcomplex/models/biology/common/networks/__init__.py +9 -0
- skcomplex/models/biology/common/networks/_edge_draw.py +95 -0
- skcomplex/models/biology/common/networks/_weighted_edge.py +48 -0
- skcomplex/models/biology/common/pharmacokinetics/__init__.py +7 -0
- skcomplex/models/biology/common/pharmacokinetics/_dosing.py +125 -0
- skcomplex/models/biology/common/populations/__init__.py +19 -0
- skcomplex/models/biology/common/populations/_exponential_growth.py +66 -0
- skcomplex/models/biology/common/populations/_gompertz_growth.py +75 -0
- skcomplex/models/biology/common/populations/_growth.py +176 -0
- skcomplex/models/biology/common/populations/_logistic_growth.py +92 -0
- skcomplex/models/biology/common/populations/_mortality.py +69 -0
- skcomplex/models/biology/common/populations/_population.py +41 -0
- skcomplex/models/biology/common/populations/_power_law_growth.py +71 -0
- skcomplex/models/biology/common/stigmergy/__init__.py +7 -0
- skcomplex/models/biology/common/stigmergy/_evaporation.py +95 -0
- skcomplex/models/biology/ecology/__init__.py +128 -0
- skcomplex/models/biology/ecology/_abundance.py +52 -0
- skcomplex/models/biology/ecology/_agent_predation.py +170 -0
- skcomplex/models/biology/ecology/_cell_quota.py +163 -0
- skcomplex/models/biology/ecology/_clustering.py +96 -0
- skcomplex/models/biology/ecology/_communities.py +234 -0
- skcomplex/models/biology/ecology/_competition.py +95 -0
- skcomplex/models/biology/ecology/_cow.py +49 -0
- skcomplex/models/biology/ecology/_cow_view.py +15 -0
- skcomplex/models/biology/ecology/_emotion_marks.py +65 -0
- skcomplex/models/biology/ecology/_factories.py +322 -0
- skcomplex/models/biology/ecology/_forager.py +116 -0
- skcomplex/models/biology/ecology/_forager_view.py +25 -0
- skcomplex/models/biology/ecology/_fronts.py +128 -0
- skcomplex/models/biology/ecology/_generalized_lotka_volterra.py +66 -0
- skcomplex/models/biology/ecology/_grass.py +96 -0
- skcomplex/models/biology/ecology/_grass_view.py +17 -0
- skcomplex/models/biology/ecology/_grazing.py +66 -0
- skcomplex/models/biology/ecology/_habitat_patch.py +49 -0
- skcomplex/models/biology/ecology/_herding.py +84 -0
- skcomplex/models/biology/ecology/_higher_order.py +102 -0
- skcomplex/models/biology/ecology/_hopping.py +68 -0
- skcomplex/models/biology/ecology/_instability.py +180 -0
- skcomplex/models/biology/ecology/_linear_growth.py +70 -0
- skcomplex/models/biology/ecology/_meadow.py +102 -0
- skcomplex/models/biology/ecology/_microbe.py +47 -0
- skcomplex/models/biology/ecology/_microbial_communities.py +90 -0
- skcomplex/models/biology/ecology/_mutualism.py +81 -0
- skcomplex/models/biology/ecology/_neutral.py +144 -0
- skcomplex/models/biology/ecology/_neutral_replacement.py +54 -0
- skcomplex/models/biology/ecology/_organism.py +63 -0
- skcomplex/models/biology/ecology/_organism_view.py +15 -0
- skcomplex/models/biology/ecology/_parasitism.py +78 -0
- skcomplex/models/biology/ecology/_pasture.py +83 -0
- skcomplex/models/biology/ecology/_pasture_view.py +16 -0
- skcomplex/models/biology/ecology/_pioneer_growth.py +101 -0
- skcomplex/models/biology/ecology/_plant.py +56 -0
- skcomplex/models/biology/ecology/_plant_view.py +16 -0
- skcomplex/models/biology/ecology/_predation.py +290 -0
- skcomplex/models/biology/ecology/_predation_interaction.py +71 -0
- skcomplex/models/biology/ecology/_predator.py +63 -0
- skcomplex/models/biology/ecology/_predator_prey_events.py +120 -0
- skcomplex/models/biology/ecology/_predator_view.py +17 -0
- skcomplex/models/biology/ecology/_prey.py +52 -0
- skcomplex/models/biology/ecology/_prey_view.py +15 -0
- skcomplex/models/biology/ecology/_rosenzweig_macarthur.py +91 -0
- skcomplex/models/biology/ecology/_seasonal_logistic_growth.py +71 -0
- skcomplex/models/biology/ecology/_sequential.py +114 -0
- skcomplex/models/biology/ecology/_sheep.py +63 -0
- skcomplex/models/biology/ecology/_sheep_view.py +17 -0
- skcomplex/models/biology/ecology/_speciation.py +71 -0
- skcomplex/models/biology/ecology/_stand.py +47 -0
- skcomplex/models/biology/ecology/_stigmergic_predator.py +98 -0
- skcomplex/models/biology/ecology/_stigmergic_prey.py +54 -0
- skcomplex/models/biology/ecology/_stigmergy.py +413 -0
- skcomplex/models/biology/ecology/_succession.py +92 -0
- skcomplex/models/biology/ecology/_successional_growth.py +88 -0
- skcomplex/models/biology/ecology/_triplet.py +55 -0
- skcomplex/models/biology/ecology/_wolf.py +63 -0
- skcomplex/models/biology/ecology/_wolf_sheep.py +156 -0
- skcomplex/models/biology/ecology/_wolf_view.py +17 -0
- skcomplex/models/biology/epidemiology/__init__.py +53 -0
- skcomplex/models/biology/epidemiology/_active_host.py +61 -0
- skcomplex/models/biology/epidemiology/_adaptive.py +316 -0
- skcomplex/models/biology/epidemiology/_agents.py +484 -0
- skcomplex/models/biology/epidemiology/_carrier.py +66 -0
- skcomplex/models/biology/epidemiology/_degree_class.py +65 -0
- skcomplex/models/biology/epidemiology/_factories.py +186 -0
- skcomplex/models/biology/epidemiology/_host.py +49 -0
- skcomplex/models/biology/epidemiology/_immunity_loss.py +84 -0
- skcomplex/models/biology/epidemiology/_infection.py +93 -0
- skcomplex/models/biology/epidemiology/_networks.py +170 -0
- skcomplex/models/biology/epidemiology/_outbreaks.py +216 -0
- skcomplex/models/biology/epidemiology/_person.py +103 -0
- skcomplex/models/biology/epidemiology/_person_view.py +23 -0
- skcomplex/models/biology/epidemiology/_recovery.py +92 -0
- skcomplex/models/biology/epidemiology/_recurrent.py +149 -0
- skcomplex/models/biology/epidemiology/_spreading.py +144 -0
- skcomplex/models/biology/epidemiology/_subpopulation.py +92 -0
- skcomplex/models/biology/epidemiology/_traveller.py +65 -0
- skcomplex/models/biology/epidemiology/_traveller_view.py +17 -0
- skcomplex/models/biology/epidemiology/_vaccination.py +184 -0
- skcomplex/models/biology/epidemiology/_walker.py +66 -0
- skcomplex/models/biology/epidemiology/_walker_view.py +17 -0
- skcomplex/models/biology/evolution/__init__.py +60 -0
- skcomplex/models/biology/evolution/_adaptive_climbing.py +106 -0
- skcomplex/models/biology/evolution/_catalysis.py +76 -0
- skcomplex/models/biology/evolution/_catalytic_link.py +21 -0
- skcomplex/models/biology/evolution/_chemical.py +111 -0
- skcomplex/models/biology/evolution/_climber.py +125 -0
- skcomplex/models/biology/evolution/_climber_view.py +19 -0
- skcomplex/models/biology/evolution/_coevolution.py +148 -0
- skcomplex/models/biology/evolution/_cyclic_species.py +44 -0
- skcomplex/models/biology/evolution/_dependency_field.py +56 -0
- skcomplex/models/biology/evolution/_finite_populations.py +287 -0
- skcomplex/models/biology/evolution/_games.py +143 -0
- skcomplex/models/biology/evolution/_genotype_class.py +42 -0
- skcomplex/models/biology/evolution/_individual.py +54 -0
- skcomplex/models/biology/evolution/_individual_view.py +16 -0
- skcomplex/models/biology/evolution/_locus.py +47 -0
- skcomplex/models/biology/evolution/_master_sequence.py +55 -0
- skcomplex/models/biology/evolution/_molecule.py +47 -0
- skcomplex/models/biology/evolution/_moran_step.py +83 -0
- skcomplex/models/biology/evolution/_networks.py +194 -0
- skcomplex/models/biology/evolution/_prebiotic.py +169 -0
- skcomplex/models/biology/evolution/_replicator.py +109 -0
- skcomplex/models/biology/evolution/_strategy.py +42 -0
- skcomplex/models/biology/evolution/_substitution.py +113 -0
- skcomplex/models/biology/evolution/_substitutions.py +126 -0
- skcomplex/models/biology/evolution/_tangled_nature_life_cycle.py +159 -0
- skcomplex/models/biology/evolution/_taxon.py +49 -0
- skcomplex/models/biology/neuroscience/__init__.py +63 -0
- skcomplex/models/biology/neuroscience/_conductances.py +193 -0
- skcomplex/models/biology/neuroscience/_delayed_synapse.py +70 -0
- skcomplex/models/biology/neuroscience/_excitable.py +178 -0
- skcomplex/models/biology/neuroscience/_fitz_hugh_nagumo_neuron.py +46 -0
- skcomplex/models/biology/neuroscience/_global_inhibition.py +71 -0
- skcomplex/models/biology/neuroscience/_hodgkin_huxley.py +103 -0
- skcomplex/models/biology/neuroscience/_inhibitor.py +62 -0
- skcomplex/models/biology/neuroscience/_inhibitor_drive.py +61 -0
- skcomplex/models/biology/neuroscience/_izhikevich.py +77 -0
- skcomplex/models/biology/neuroscience/_leaky_integrate_and_fire.py +80 -0
- skcomplex/models/biology/neuroscience/_mutual_inhibition.py +55 -0
- skcomplex/models/biology/neuroscience/_networks.py +235 -0
- skcomplex/models/biology/neuroscience/_neural_field_site.py +66 -0
- skcomplex/models/biology/neuroscience/_neural_fields.py +94 -0
- skcomplex/models/biology/neuroscience/_neurons.py +129 -0
- skcomplex/models/biology/neuroscience/_polyhomeostatic_neuron.py +93 -0
- skcomplex/models/biology/neuroscience/_populations.py +333 -0
- skcomplex/models/biology/neuroscience/_pulse_coupling.py +71 -0
- skcomplex/models/biology/neuroscience/_rate_unit.py +67 -0
- skcomplex/models/biology/neuroscience/_spike_reset.py +95 -0
- skcomplex/models/biology/neuroscience/_spiking_neuron.py +67 -0
- skcomplex/models/biology/neuroscience/_synapses.py +226 -0
- skcomplex/models/biology/neuroscience/_terman_wang.py +113 -0
- skcomplex/models/biology/neuroscience/_theta_neuron.py +66 -0
- skcomplex/models/biology/neuroscience/_wilson_cowan.py +122 -0
- skcomplex/models/biology/neuroscience/types.py +8 -0
- skcomplex/models/biology/oncology/__init__.py +212 -0
- skcomplex/models/biology/oncology/_androgen_receptor_prostate.py +240 -0
- skcomplex/models/biology/oncology/_androgen_suppression.py +109 -0
- skcomplex/models/biology/oncology/_angiogenesis.py +306 -0
- skcomplex/models/biology/oncology/_angiogenesis_immunotherapy_tumour.py +247 -0
- skcomplex/models/biology/oncology/_angiogenic_tumour.py +110 -0
- skcomplex/models/biology/oncology/_antiangiogenic.py +227 -0
- skcomplex/models/biology/oncology/_bone_marrow_blood.py +196 -0
- skcomplex/models/biology/oncology/_cell_cycle.py +85 -0
- skcomplex/models/biology/oncology/_cell_kinetics.py +285 -0
- skcomplex/models/biology/oncology/_cell_quota_prostate.py +207 -0
- skcomplex/models/biology/oncology/_cell_survival.py +72 -0
- skcomplex/models/biology/oncology/_checkpoint_tumour.py +161 -0
- skcomplex/models/biology/oncology/_chemoimmunotherapy_tumour.py +251 -0
- skcomplex/models/biology/oncology/_chemotherapy.py +565 -0
- skcomplex/models/biology/oncology/_chemovirotherapy_tumour.py +139 -0
- skcomplex/models/biology/oncology/_clonal_tumour.py +134 -0
- skcomplex/models/biology/oncology/_combination_therapy.py +989 -0
- skcomplex/models/biology/oncology/_delayed_vaccinated_tumour.py +341 -0
- skcomplex/models/biology/oncology/_dormant_cell_cycle.py +95 -0
- skcomplex/models/biology/oncology/_erythropoiesis.py +129 -0
- skcomplex/models/biology/oncology/_exponential_linear_growth.py +66 -0
- skcomplex/models/biology/oncology/_gene_viral_therapy.py +480 -0
- skcomplex/models/biology/oncology/_glioma_brain.py +165 -0
- skcomplex/models/biology/oncology/_growth.py +378 -0
- skcomplex/models/biology/oncology/_her2_tumour.py +156 -0
- skcomplex/models/biology/oncology/_hormone_therapy.py +985 -0
- skcomplex/models/biology/oncology/_immune_competition.py +241 -0
- skcomplex/models/biology/oncology/_immunotherapy.py +1001 -0
- skcomplex/models/biology/oncology/_intermittent_suppression.py +130 -0
- skcomplex/models/biology/oncology/_irradiated_tumour.py +105 -0
- skcomplex/models/biology/oncology/_irradiation.py +97 -0
- skcomplex/models/biology/oncology/_kirschner_panetta_tumour.py +132 -0
- skcomplex/models/biology/oncology/_leukaemia_stem_cells.py +150 -0
- skcomplex/models/biology/oncology/_linear_quadratic_survival.py +112 -0
- skcomplex/models/biology/oncology/_log_kill.py +81 -0
- skcomplex/models/biology/oncology/_metastasis_chemotherapy.py +211 -0
- skcomplex/models/biology/oncology/_multidrug_resistance.py +201 -0
- skcomplex/models/biology/oncology/_oncolytic_virus.py +68 -0
- skcomplex/models/biology/oncology/_oncolytic_virus_dendritic.py +155 -0
- skcomplex/models/biology/oncology/_optimal_chemotherapy.py +157 -0
- skcomplex/models/biology/oncology/_optimal_immunotherapy.py +137 -0
- skcomplex/models/biology/oncology/_optimal_therapy.py +208 -0
- skcomplex/models/biology/oncology/_piecewise_linear_prostate.py +147 -0
- skcomplex/models/biology/oncology/_radiation_competition.py +104 -0
- skcomplex/models/biology/oncology/_radiotherapy.py +311 -0
- skcomplex/models/biology/oncology/_resistance_switching.py +148 -0
- skcomplex/models/biology/oncology/_resting_hunting_chemotherapy.py +136 -0
- skcomplex/models/biology/oncology/_sirna_tgf_beta.py +189 -0
- skcomplex/models/biology/oncology/_sprout.py +65 -0
- skcomplex/models/biology/oncology/_sprout_view.py +17 -0
- skcomplex/models/biology/oncology/_stem_cell_differentiation.py +262 -0
- skcomplex/models/biology/oncology/_stem_cells.py +548 -0
- skcomplex/models/biology/oncology/_suppressed_tumour.py +338 -0
- skcomplex/models/biology/oncology/_tamoxifen_tumour.py +172 -0
- skcomplex/models/biology/oncology/_tcr_gene_therapy.py +98 -0
- skcomplex/models/biology/oncology/_therapy_switch.py +86 -0
- skcomplex/models/biology/oncology/_tissue.py +71 -0
- skcomplex/models/biology/oncology/_tumour_cell.py +85 -0
- skcomplex/models/biology/oncology/_tumour_cell_view.py +21 -0
- skcomplex/models/biology/oncology/_tumour_immune_chemotherapy.py +169 -0
- skcomplex/models/biology/oncology/_vaccinated_tumour.py +180 -0
- skcomplex/models/biology/oncology/_vascular_support.py +71 -0
- skcomplex/models/biology/oncology/_vascularized_spheroid.py +264 -0
- skcomplex/models/biology/oncology/_vasculature.py +42 -0
- skcomplex/models/biology/oncology/_vessel.py +49 -0
- skcomplex/models/biology/oncology/_vessel_view.py +15 -0
- skcomplex/models/biology/physiology/__init__.py +46 -0
- skcomplex/models/biology/physiology/_adaptivity.py +277 -0
- skcomplex/models/biology/physiology/_cardiac.py +167 -0
- skcomplex/models/biology/physiology/_chamber.py +71 -0
- skcomplex/models/biology/physiology/_circulation.py +97 -0
- skcomplex/models/biology/physiology/_coagulation.py +130 -0
- skcomplex/models/biology/physiology/_contour_cell.py +61 -0
- skcomplex/models/biology/physiology/_contour_uptake.py +61 -0
- skcomplex/models/biology/physiology/_exchange.py +165 -0
- skcomplex/models/biology/physiology/_exchanging_cell.py +83 -0
- skcomplex/models/biology/physiology/_fitz_hugh_nagumo.py +46 -0
- skcomplex/models/biology/physiology/_glucose_control.py +136 -0
- skcomplex/models/biology/physiology/_mackey_glass.py +81 -0
- skcomplex/models/biology/physiology/_pharmacokinetics.py +104 -0
- skcomplex/models/biology/physiology/_physiology.py +118 -0
- skcomplex/models/biology/physiology/_regulation.py +251 -0
- skcomplex/models/biology/physiology/_resistive_flow.py +67 -0
- skcomplex/models/biology/physiology/_toxicity.py +164 -0
- skcomplex/models/biology/systems_biology/__init__.py +52 -0
- skcomplex/models/biology/systems_biology/_boolean.py +141 -0
- skcomplex/models/biology/systems_biology/_boolean_function.py +84 -0
- skcomplex/models/biology/systems_biology/_boolean_models.py +206 -0
- skcomplex/models/biology/systems_biology/_boolean_node.py +41 -0
- skcomplex/models/biology/systems_biology/_cascades.py +178 -0
- skcomplex/models/biology/systems_biology/_clocks.py +274 -0
- skcomplex/models/biology/systems_biology/_generalized_mass_action.py +123 -0
- skcomplex/models/biology/systems_biology/_genes.py +296 -0
- skcomplex/models/biology/systems_biology/_min_proteins.py +230 -0
- skcomplex/models/biology/systems_biology/_networks.py +359 -0
- skcomplex/models/biology/systems_biology/_phosphorylation_loop.py +121 -0
- skcomplex/models/biology/systems_biology/_probabilistic.py +75 -0
- skcomplex/models/biology/systems_biology/_probabilistic_function.py +127 -0
- skcomplex/models/biology/systems_biology/_probabilistic_node.py +47 -0
- skcomplex/models/biology/systems_biology/_repression.py +104 -0
- skcomplex/models/biology/systems_biology/_s_system.py +88 -0
- skcomplex/models/biology/systems_biology/_species.py +44 -0
- skcomplex/models/biology/systems_biology/_threshold_function.py +63 -0
- skcomplex/models/biology/systems_biology/types.py +9 -0
- skcomplex/models/chemistry/__init__.py +1 -0
- skcomplex/models/chemistry/common/__init__.py +3 -0
- skcomplex/models/chemistry/common/kinetics/__init__.py +9 -0
- skcomplex/models/chemistry/common/kinetics/_brusselator.py +61 -0
- skcomplex/models/chemistry/common/kinetics/_cubic_autocatalysis.py +80 -0
- skcomplex/models/chemistry/kinetics/__init__.py +38 -0
- skcomplex/models/chemistry/kinetics/_catalyst_pellet.py +60 -0
- skcomplex/models/chemistry/kinetics/_cubic_autocatalysis.py +60 -0
- skcomplex/models/chemistry/kinetics/_cyclic.py +130 -0
- skcomplex/models/chemistry/kinetics/_hodgepodge.py +157 -0
- skcomplex/models/chemistry/kinetics/_nanoparticles.py +103 -0
- skcomplex/models/chemistry/kinetics/_oregonator.py +76 -0
- skcomplex/models/chemistry/kinetics/_oscillators.py +244 -0
- skcomplex/models/chemistry/kinetics/_pulsed_electrode.py +107 -0
- skcomplex/models/chemistry/kinetics/_reactions.py +332 -0
- skcomplex/models/chemistry/kinetics/_reactors.py +144 -0
- skcomplex/models/chemistry/pattern_formation/__init__.py +15 -0
- skcomplex/models/chemistry/pattern_formation/_brusselator.py +62 -0
- skcomplex/models/chemistry/pattern_formation/_gray_scott.py +68 -0
- skcomplex/models/chemistry/pattern_formation/_reaction_diffusion.py +268 -0
- skcomplex/models/chemistry/pattern_formation/_schnakenberg.py +67 -0
- skcomplex/models/computer_science/__init__.py +1 -0
- skcomplex/models/computer_science/automata/__init__.py +56 -0
- skcomplex/models/computer_science/automata/_automata.py +229 -0
- skcomplex/models/computer_science/automata/_automaton.py +202 -0
- skcomplex/models/computer_science/automata/_binary_cell.py +41 -0
- skcomplex/models/computer_science/automata/_codes.py +73 -0
- skcomplex/models/computer_science/automata/_diffusion_cell.py +47 -0
- skcomplex/models/computer_science/automata/_group_automata.py +449 -0
- skcomplex/models/computer_science/automata/_groups.py +132 -0
- skcomplex/models/computer_science/automata/_linear_automaton.py +128 -0
- skcomplex/models/computer_science/automata/_noisy_elementary_cell.py +46 -0
- skcomplex/models/computer_science/automata/_pascal_cell.py +41 -0
- skcomplex/models/computer_science/automata/_subshift.py +192 -0
- skcomplex/models/computer_science/automata/_variants.py +292 -0
- skcomplex/models/computer_science/evolutionary_computation/__init__.py +27 -0
- skcomplex/models/computer_science/evolutionary_computation/_annealed_candidate.py +39 -0
- skcomplex/models/computer_science/evolutionary_computation/_bit_string.py +55 -0
- skcomplex/models/computer_science/evolutionary_computation/_bit_string_view.py +13 -0
- skcomplex/models/computer_science/evolutionary_computation/_genetic_algorithms.py +92 -0
- skcomplex/models/computer_science/evolutionary_computation/_landscapes.py +82 -0
- skcomplex/models/computer_science/evolutionary_computation/_optimisers.py +217 -0
- skcomplex/models/computer_science/evolutionary_computation/_reproduction.py +129 -0
- skcomplex/models/computer_science/evolutionary_computation/_room_cleaning.py +170 -0
- skcomplex/models/computer_science/evolutionary_computation/_running_best.py +30 -0
- skcomplex/models/computer_science/evolutionary_computation/_running_best_update.py +58 -0
- skcomplex/models/computer_science/evolutionary_computation/_search_candidate.py +32 -0
- skcomplex/models/computer_science/evolutionary_computation/_strategy.py +54 -0
- skcomplex/models/computer_science/evolutionary_computation/_strategy_view.py +14 -0
- skcomplex/models/computer_science/neural_networks/__init__.py +34 -0
- skcomplex/models/computer_science/neural_networks/_binary_weight.py +32 -0
- skcomplex/models/computer_science/neural_networks/_diluted.py +159 -0
- skcomplex/models/computer_science/neural_networks/_echo_state.py +173 -0
- skcomplex/models/computer_science/neural_networks/_elman.py +160 -0
- skcomplex/models/computer_science/neural_networks/_hidden_unit.py +51 -0
- skcomplex/models/computer_science/neural_networks/_hopfield.py +134 -0
- skcomplex/models/computer_science/neural_networks/_hopfield_update.py +51 -0
- skcomplex/models/computer_science/neural_networks/_input_coupling.py +63 -0
- skcomplex/models/computer_science/neural_networks/_input_unit.py +39 -0
- skcomplex/models/computer_science/neural_networks/_neuron_view.py +14 -0
- skcomplex/models/computer_science/neural_networks/_output_unit.py +51 -0
- skcomplex/models/computer_science/neural_networks/_perceptron.py +72 -0
- skcomplex/models/computer_science/neural_networks/_readout_coupling.py +69 -0
- skcomplex/models/computer_science/neural_networks/_recurrence_coupling.py +66 -0
- skcomplex/models/economics/__init__.py +1 -0
- skcomplex/models/economics/common/__init__.py +3 -0
- skcomplex/models/economics/common/forecasting/__init__.py +7 -0
- skcomplex/models/economics/common/forecasting/_heuristics.py +51 -0
- skcomplex/models/economics/common/resources/__init__.py +7 -0
- skcomplex/models/economics/common/resources/_regrowth.py +70 -0
- skcomplex/models/economics/econophysics/__init__.py +58 -0
- skcomplex/models/economics/econophysics/_crowd_avoidance.py +80 -0
- skcomplex/models/economics/econophysics/_debt_exchange.py +74 -0
- skcomplex/models/economics/econophysics/_diner.py +59 -0
- skcomplex/models/economics/econophysics/_diner_view.py +17 -0
- skcomplex/models/economics/econophysics/_el_farol.py +114 -0
- skcomplex/models/economics/econophysics/_exchange.py +82 -0
- skcomplex/models/economics/econophysics/_game_state_spec.py +26 -0
- skcomplex/models/economics/econophysics/_kinetic.py +80 -0
- skcomplex/models/economics/econophysics/_kolkata.py +87 -0
- skcomplex/models/economics/econophysics/_minority.py +123 -0
- skcomplex/models/economics/econophysics/_minority_game.py +161 -0
- skcomplex/models/economics/econophysics/_minority_player.py +79 -0
- skcomplex/models/economics/econophysics/_minority_player_view.py +22 -0
- skcomplex/models/economics/econophysics/_patron.py +105 -0
- skcomplex/models/economics/econophysics/_patron_view.py +18 -0
- skcomplex/models/economics/econophysics/_predictor_pool.py +181 -0
- skcomplex/models/economics/econophysics/_predictor_pool_view.py +14 -0
- skcomplex/models/economics/econophysics/_restaurants.py +93 -0
- skcomplex/models/economics/econophysics/_saving_exchange.py +73 -0
- skcomplex/models/economics/econophysics/_saving_trader.py +47 -0
- skcomplex/models/economics/econophysics/_saving_trader_view.py +12 -0
- skcomplex/models/economics/econophysics/_wealth_exchange.py +114 -0
- skcomplex/models/economics/econophysics/_welfare.py +210 -0
- skcomplex/models/economics/econophysics/_welfare_policy.py +99 -0
- skcomplex/models/economics/finance/__init__.py +41 -0
- skcomplex/models/economics/finance/_arbitrage.py +139 -0
- skcomplex/models/economics/finance/_asset.py +42 -0
- skcomplex/models/economics/finance/_assets.py +44 -0
- skcomplex/models/economics/finance/_book.py +115 -0
- skcomplex/models/economics/finance/_contagion.py +116 -0
- skcomplex/models/economics/finance/_correlated_assets.py +69 -0
- skcomplex/models/economics/finance/_debt_rank_cascade.py +86 -0
- skcomplex/models/economics/finance/_geometric_brownian_motion.py +89 -0
- skcomplex/models/economics/finance/_gibrat_firm.py +82 -0
- skcomplex/models/economics/finance/_gibrat_firm_view.py +18 -0
- skcomplex/models/economics/finance/_growth_processes.py +195 -0
- skcomplex/models/economics/finance/_interbank.py +76 -0
- skcomplex/models/economics/finance/_interbank_view.py +14 -0
- skcomplex/models/economics/finance/_kesten_firm.py +88 -0
- skcomplex/models/economics/finance/_kesten_firm_view.py +16 -0
- skcomplex/models/economics/finance/_order_book.py +164 -0
- skcomplex/models/economics/finance/_reflecting_floor.py +66 -0
- skcomplex/models/economics/finance/_stock_trader.py +205 -0
- skcomplex/models/economics/finance/_stock_trader_view.py +24 -0
- skcomplex/models/economics/finance/_wealth.py +143 -0
- skcomplex/models/economics/innovation/__init__.py +23 -0
- skcomplex/models/economics/innovation/_adoption.py +233 -0
- skcomplex/models/economics/innovation/_bass.py +124 -0
- skcomplex/models/economics/innovation/_diversity.py +104 -0
- skcomplex/models/economics/innovation/_household_view.py +20 -0
- skcomplex/models/economics/innovation/_invention.py +140 -0
- skcomplex/models/economics/innovation/_part.py +64 -0
- skcomplex/models/economics/innovation/_part_view.py +12 -0
- skcomplex/models/economics/innovation/_redesign.py +88 -0
- skcomplex/models/economics/innovation/_technology.py +203 -0
- skcomplex/models/economics/innovation/_technology_view.py +14 -0
- skcomplex/models/economics/macroeconomics/__init__.py +70 -0
- skcomplex/models/economics/macroeconomics/_banking.py +148 -0
- skcomplex/models/economics/macroeconomics/_business.py +221 -0
- skcomplex/models/economics/macroeconomics/_business_view.py +24 -0
- skcomplex/models/economics/macroeconomics/_capital.py +122 -0
- skcomplex/models/economics/macroeconomics/_central_bank.py +80 -0
- skcomplex/models/economics/macroeconomics/_central_bank_view.py +13 -0
- skcomplex/models/economics/macroeconomics/_circuit.py +93 -0
- skcomplex/models/economics/macroeconomics/_commons.py +77 -0
- skcomplex/models/economics/macroeconomics/_credit.py +219 -0
- skcomplex/models/economics/macroeconomics/_credit_market.py +83 -0
- skcomplex/models/economics/macroeconomics/_depositor.py +114 -0
- skcomplex/models/economics/macroeconomics/_depositor_view.py +19 -0
- skcomplex/models/economics/macroeconomics/_economy.py +42 -0
- skcomplex/models/economics/macroeconomics/_estate.py +88 -0
- skcomplex/models/economics/macroeconomics/_firm.py +184 -0
- skcomplex/models/economics/macroeconomics/_firm_view.py +27 -0
- skcomplex/models/economics/macroeconomics/_firms.py +208 -0
- skcomplex/models/economics/macroeconomics/_firms_element.py +67 -0
- skcomplex/models/economics/macroeconomics/_food_market.py +84 -0
- skcomplex/models/economics/macroeconomics/_growth.py +109 -0
- skcomplex/models/economics/macroeconomics/_households.py +52 -0
- skcomplex/models/economics/macroeconomics/_income.py +59 -0
- skcomplex/models/economics/macroeconomics/_investing_firm_view.py +21 -0
- skcomplex/models/economics/macroeconomics/_labour_market.py +73 -0
- skcomplex/models/economics/macroeconomics/_lender.py +160 -0
- skcomplex/models/economics/macroeconomics/_lender_view.py +18 -0
- skcomplex/models/economics/macroeconomics/_metaphoria.py +257 -0
- skcomplex/models/economics/macroeconomics/_monetary.py +140 -0
- skcomplex/models/economics/macroeconomics/_monetary_bank.py +57 -0
- skcomplex/models/economics/macroeconomics/_optimal_growth.py +173 -0
- skcomplex/models/economics/macroeconomics/_people_spec.py +26 -0
- skcomplex/models/economics/macroeconomics/_plot.py +69 -0
- skcomplex/models/economics/macroeconomics/_plot_view.py +15 -0
- skcomplex/models/economics/macroeconomics/_policy_switch.py +78 -0
- skcomplex/models/economics/macroeconomics/_reserve_bank.py +118 -0
- skcomplex/models/economics/macroeconomics/_reserve_bank_view.py +14 -0
- skcomplex/models/economics/macroeconomics/_settler.py +291 -0
- skcomplex/models/economics/macroeconomics/_settler_view.py +56 -0
- skcomplex/models/economics/macroeconomics/_solow_growth.py +70 -0
- skcomplex/models/economics/macroeconomics/_trade.py +289 -0
- skcomplex/models/economics/markets/__init__.py +128 -0
- skcomplex/models/economics/markets/_auction_ledger.py +81 -0
- skcomplex/models/economics/markets/_barter.py +232 -0
- skcomplex/models/economics/markets/_barter_networks.py +169 -0
- skcomplex/models/economics/markets/_barter_trader.py +136 -0
- skcomplex/models/economics/markets/_barter_trader_view.py +16 -0
- skcomplex/models/economics/markets/_bilateral_barter.py +150 -0
- skcomplex/models/economics/markets/_brewery.py +67 -0
- skcomplex/models/economics/markets/_brock_hommes.py +115 -0
- skcomplex/models/economics/markets/_car.py +75 -0
- skcomplex/models/economics/markets/_car_view.py +14 -0
- skcomplex/models/economics/markets/_car_wash_operation.py +141 -0
- skcomplex/models/economics/markets/_cobweb.py +109 -0
- skcomplex/models/economics/markets/_commodities.py +286 -0
- skcomplex/models/economics/markets/_consumer_view.py +22 -0
- skcomplex/models/economics/markets/_cournot_adjustment.py +65 -0
- skcomplex/models/economics/markets/_cournot_best_response.py +88 -0
- skcomplex/models/economics/markets/_customer.py +147 -0
- skcomplex/models/economics/markets/_customer_view.py +16 -0
- skcomplex/models/economics/markets/_double_auction.py +141 -0
- skcomplex/models/economics/markets/_duopolist.py +54 -0
- skcomplex/models/economics/markets/_duopolist_view.py +13 -0
- skcomplex/models/economics/markets/_duopoly.py +85 -0
- skcomplex/models/economics/markets/_echelon.py +132 -0
- skcomplex/models/economics/markets/_employer.py +102 -0
- skcomplex/models/economics/markets/_employer_view.py +20 -0
- skcomplex/models/economics/markets/_exchange.py +171 -0
- skcomplex/models/economics/markets/_exchange_interaction.py +134 -0
- skcomplex/models/economics/markets/_factory.py +105 -0
- skcomplex/models/economics/markets/_fair_food.py +205 -0
- skcomplex/models/economics/markets/_forager.py +64 -0
- skcomplex/models/economics/markets/_forager_view.py +14 -0
- skcomplex/models/economics/markets/_goods_trader.py +68 -0
- skcomplex/models/economics/markets/_goods_traders.py +139 -0
- skcomplex/models/economics/markets/_heuristic_pricing.py +122 -0
- skcomplex/models/economics/markets/_heuristic_trader.py +108 -0
- skcomplex/models/economics/markets/_heuristic_trader_view.py +14 -0
- skcomplex/models/economics/markets/_inventory.py +212 -0
- skcomplex/models/economics/markets/_jobseeker.py +144 -0
- skcomplex/models/economics/markets/_jobseeker_view.py +26 -0
- skcomplex/models/economics/markets/_labour.py +188 -0
- skcomplex/models/economics/markets/_market.py +39 -0
- skcomplex/models/economics/markets/_market_state_spec.py +25 -0
- skcomplex/models/economics/markets/_oligopoly.py +167 -0
- skcomplex/models/economics/markets/_patch_map_spec.py +22 -0
- skcomplex/models/economics/markets/_perishables.py +150 -0
- skcomplex/models/economics/markets/_price_point.py +95 -0
- skcomplex/models/economics/markets/_prices.py +151 -0
- skcomplex/models/economics/markets/_pricing_firm.py +48 -0
- skcomplex/models/economics/markets/_pricing_firm_view.py +14 -0
- skcomplex/models/economics/markets/_pricing_game_spec.py +81 -0
- skcomplex/models/economics/markets/_produce.py +94 -0
- skcomplex/models/economics/markets/_product.py +97 -0
- skcomplex/models/economics/markets/_product_view.py +13 -0
- skcomplex/models/economics/markets/_queues.py +101 -0
- skcomplex/models/economics/markets/_resident.py +119 -0
- skcomplex/models/economics/markets/_resident_view.py +20 -0
- skcomplex/models/economics/markets/_retail_demand.py +52 -0
- skcomplex/models/economics/markets/_retailer.py +115 -0
- skcomplex/models/economics/markets/_shopper.py +115 -0
- skcomplex/models/economics/markets/_shopper_view.py +15 -0
- skcomplex/models/economics/markets/_shops.py +199 -0
- skcomplex/models/economics/markets/_stall.py +74 -0
- skcomplex/models/economics/markets/_stall_view.py +14 -0
- skcomplex/models/economics/markets/_store.py +171 -0
- skcomplex/models/economics/markets/_store_view.py +27 -0
- skcomplex/models/economics/markets/_sugar_patch.py +61 -0
- skcomplex/models/economics/markets/_sugar_patch_view.py +14 -0
- skcomplex/models/economics/markets/_sugarscape.py +250 -0
- skcomplex/models/economics/markets/_supply_chains.py +217 -0
- skcomplex/models/economics/markets/_supply_link.py +74 -0
- skcomplex/models/economics/markets/_till.py +79 -0
- skcomplex/models/economics/markets/_till_view.py +15 -0
- skcomplex/models/economics/markets/_washer.py +78 -0
- skcomplex/models/economics/markets/_zero_intelligence_buyer.py +99 -0
- skcomplex/models/economics/markets/_zero_intelligence_buyer_view.py +20 -0
- skcomplex/models/economics/markets/_zero_intelligence_seller.py +100 -0
- skcomplex/models/economics/markets/_zero_intelligence_seller_view.py +20 -0
- skcomplex/models/economics/resources/__init__.py +50 -0
- skcomplex/models/economics/resources/_bid_rent.py +104 -0
- skcomplex/models/economics/resources/_commons.py +218 -0
- skcomplex/models/economics/resources/_cow.py +69 -0
- skcomplex/models/economics/resources/_cow_view.py +13 -0
- skcomplex/models/economics/resources/_extraction.py +230 -0
- skcomplex/models/economics/resources/_farmer.py +93 -0
- skcomplex/models/economics/resources/_farmer_view.py +12 -0
- skcomplex/models/economics/resources/_fisheries.py +384 -0
- skcomplex/models/economics/resources/_fishery.py +91 -0
- skcomplex/models/economics/resources/_food.py +370 -0
- skcomplex/models/economics/resources/_grazing.py +148 -0
- skcomplex/models/economics/resources/_harvest.py +69 -0
- skcomplex/models/economics/resources/_harvesting.py +51 -0
- skcomplex/models/economics/resources/_herder.py +78 -0
- skcomplex/models/economics/resources/_herder_view.py +19 -0
- skcomplex/models/economics/resources/_land_cell.py +39 -0
- skcomplex/models/economics/resources/_land_use.py +73 -0
- skcomplex/models/economics/resources/_oil_economy.py +85 -0
- skcomplex/models/economics/resources/_optimal_harvesting.py +180 -0
- skcomplex/models/economics/resources/_pasture.py +98 -0
- skcomplex/models/economics/resources/_pasture_view.py +15 -0
- skcomplex/models/economics/resources/_plantations.py +359 -0
- skcomplex/models/economics/resources/_quota_regulator.py +84 -0
- skcomplex/models/economics/resources/_stock.py +67 -0
- skcomplex/models/engineering/__init__.py +1 -0
- skcomplex/models/engineering/circuits/__init__.py +23 -0
- skcomplex/models/engineering/circuits/_chua_circuit.py +48 -0
- skcomplex/models/engineering/circuits/_circuit.py +47 -0
- skcomplex/models/engineering/circuits/_circuits.py +387 -0
- skcomplex/models/engineering/circuits/_harvesters.py +150 -0
- skcomplex/models/engineering/circuits/_kicked_circuit.py +43 -0
- skcomplex/models/engineering/circuits/_memristor_circuit.py +48 -0
- skcomplex/models/engineering/circuits/_mixed_mode_chua_circuit.py +54 -0
- skcomplex/models/engineering/circuits/_multiscroll_chua_circuit.py +58 -0
- skcomplex/models/engineering/circuits/_tunnel_diode_circuit.py +45 -0
- skcomplex/models/engineering/common/__init__.py +6 -0
- skcomplex/models/engineering/common/mechanics/__init__.py +7 -0
- skcomplex/models/engineering/common/mechanics/_spring_damper.py +121 -0
- skcomplex/models/engineering/control/__init__.py +23 -0
- skcomplex/models/engineering/control/_cart_pendulum.py +119 -0
- skcomplex/models/engineering/control/_control.py +266 -0
- skcomplex/models/engineering/control/_controlled_process.py +72 -0
- skcomplex/models/engineering/control/_driven_oscillator.py +79 -0
- skcomplex/models/engineering/control/_integrator.py +39 -0
- skcomplex/models/engineering/control/_pid.py +106 -0
- skcomplex/models/engineering/control/_regulation.py +170 -0
- skcomplex/models/engineering/control/_room.py +51 -0
- skcomplex/models/engineering/control/_satellite.py +56 -0
- skcomplex/models/engineering/control/_state_feedback.py +82 -0
- skcomplex/models/engineering/control/_swinging_pendulum.py +60 -0
- skcomplex/models/engineering/power_systems/__init__.py +11 -0
- skcomplex/models/engineering/power_systems/_electromechanics.py +224 -0
- skcomplex/models/engineering/power_systems/_faraday_disk.py +93 -0
- skcomplex/models/engineering/power_systems/_grid_node.py +39 -0
- skcomplex/models/engineering/power_systems/_grids.py +89 -0
- skcomplex/models/engineering/power_systems/_rail_segment.py +80 -0
- skcomplex/models/engineering/power_systems/_regenerative_car.py +55 -0
- skcomplex/models/engineering/power_systems/_transmission_line.py +48 -0
- skcomplex/models/engineering/processes/__init__.py +13 -0
- skcomplex/models/engineering/processes/_irrigation_scheme.py +112 -0
- skcomplex/models/engineering/processes/_processes.py +115 -0
- skcomplex/models/engineering/processes/_relief_pipeline.py +79 -0
- skcomplex/models/engineering/processes/_rice_mill.py +112 -0
- skcomplex/models/engineering/processes/_stage.py +34 -0
- skcomplex/models/engineering/processes/_systems.py +316 -0
- skcomplex/models/engineering/processes/_tub.py +42 -0
- skcomplex/models/engineering/processes/_waste_system.py +101 -0
- skcomplex/models/engineering/robotics/__init__.py +12 -0
- skcomplex/models/engineering/robotics/_light_sensitive_robot.py +125 -0
- skcomplex/models/engineering/robotics/_robots.py +177 -0
- skcomplex/models/engineering/robotics/_swarm_robot.py +211 -0
- skcomplex/models/engineering/robotics/_swarm_robot_view.py +23 -0
- skcomplex/models/engineering/traffic/__init__.py +43 -0
- skcomplex/models/engineering/traffic/_arrival.py +117 -0
- skcomplex/models/engineering/traffic/_cab.py +170 -0
- skcomplex/models/engineering/traffic/_cab_view.py +21 -0
- skcomplex/models/engineering/traffic/_car.py +31 -0
- skcomplex/models/engineering/traffic/_car_following.py +245 -0
- skcomplex/models/engineering/traffic/_careless_braking.py +87 -0
- skcomplex/models/engineering/traffic/_continuum.py +429 -0
- skcomplex/models/engineering/traffic/_delayed_following.py +65 -0
- skcomplex/models/engineering/traffic/_driver.py +140 -0
- skcomplex/models/engineering/traffic/_driver_view.py +18 -0
- skcomplex/models/engineering/traffic/_drivers.py +133 -0
- skcomplex/models/engineering/traffic/_gas_kinetic_traffic.py +96 -0
- skcomplex/models/engineering/traffic/_intelligent_driver.py +90 -0
- skcomplex/models/engineering/traffic/_kerner_konhauser.py +42 -0
- skcomplex/models/engineering/traffic/_langevin.py +170 -0
- skcomplex/models/engineering/traffic/_langevin_driving.py +95 -0
- skcomplex/models/engineering/traffic/_lead_car.py +40 -0
- skcomplex/models/engineering/traffic/_lighthill_whitham_richards.py +30 -0
- skcomplex/models/engineering/traffic/_motorist.py +118 -0
- skcomplex/models/engineering/traffic/_motorist_view.py +18 -0
- skcomplex/models/engineering/traffic/_optimal_velocity.py +72 -0
- skcomplex/models/engineering/traffic/_payne.py +38 -0
- skcomplex/models/engineering/traffic/_rider.py +72 -0
- skcomplex/models/engineering/traffic/_rider_view.py +16 -0
- skcomplex/models/engineering/traffic/_ridesharing.py +179 -0
- skcomplex/models/engineering/traffic/_traffic.py +143 -0
- skcomplex/models/engineering/traffic/_traffic_moments.py +57 -0
- skcomplex/models/mathematics/__init__.py +1 -0
- skcomplex/models/mathematics/common/__init__.py +3 -0
- skcomplex/models/mathematics/common/flows/__init__.py +7 -0
- skcomplex/models/mathematics/common/flows/_lorenz.py +90 -0
- skcomplex/models/mathematics/dynamical_systems/__init__.py +90 -0
- skcomplex/models/mathematics/dynamical_systems/_baker_map.py +59 -0
- skcomplex/models/mathematics/dynamical_systems/_blow_up.py +64 -0
- skcomplex/models/mathematics/dynamical_systems/_cat_map.py +44 -0
- skcomplex/models/mathematics/dynamical_systems/_chaotic_ensembles.py +186 -0
- skcomplex/models/mathematics/dynamical_systems/_circle_map.py +49 -0
- skcomplex/models/mathematics/dynamical_systems/_cubic_walk.py +72 -0
- skcomplex/models/mathematics/dynamical_systems/_cusp.py +64 -0
- skcomplex/models/mathematics/dynamical_systems/_doubling_map.py +65 -0
- skcomplex/models/mathematics/dynamical_systems/_driven_flows.py +158 -0
- skcomplex/models/mathematics/dynamical_systems/_flows.py +179 -0
- skcomplex/models/mathematics/dynamical_systems/_henon_map.py +54 -0
- skcomplex/models/mathematics/dynamical_systems/_hopf.py +77 -0
- skcomplex/models/mathematics/dynamical_systems/_intermittency_map.py +44 -0
- skcomplex/models/mathematics/dynamical_systems/_jerk.py +72 -0
- skcomplex/models/mathematics/dynamical_systems/_koopman.py +118 -0
- skcomplex/models/mathematics/dynamical_systems/_logistic_map.py +44 -0
- skcomplex/models/mathematics/dynamical_systems/_maps.py +465 -0
- skcomplex/models/mathematics/dynamical_systems/_newton_map.py +44 -0
- skcomplex/models/mathematics/dynamical_systems/_normal_forms.py +154 -0
- skcomplex/models/mathematics/dynamical_systems/_rossler.py +83 -0
- skcomplex/models/mathematics/dynamical_systems/_saddle_node.py +59 -0
- skcomplex/models/mathematics/dynamical_systems/_skew_tent_map.py +63 -0
- skcomplex/models/mathematics/dynamical_systems/_standard_map.py +52 -0
- skcomplex/models/mathematics/dynamical_systems/_subcritical_forms.py +160 -0
- skcomplex/models/mathematics/dynamical_systems/_takens_bogdanov.py +74 -0
- skcomplex/models/mathematics/dynamical_systems/_tent_map.py +44 -0
- skcomplex/models/mathematics/dynamical_systems/_towel_map.py +59 -0
- skcomplex/models/mathematics/fractals/__init__.py +61 -0
- skcomplex/models/mathematics/fractals/_affine_spec.py +100 -0
- skcomplex/models/mathematics/fractals/_cantor_element.py +92 -0
- skcomplex/models/mathematics/fractals/_chaos_game.py +140 -0
- skcomplex/models/mathematics/fractals/_geometry_spec.py +84 -0
- skcomplex/models/mathematics/fractals/_geometry_visual.py +190 -0
- skcomplex/models/mathematics/fractals/_group_spec.py +24 -0
- skcomplex/models/mathematics/fractals/_koch_element.py +43 -0
- skcomplex/models/mathematics/fractals/_module_spec.py +47 -0
- skcomplex/models/mathematics/fractals/_patch_element.py +89 -0
- skcomplex/models/mathematics/fractals/_patch_kernel.py +200 -0
- skcomplex/models/mathematics/fractals/_patch_structure_spec.py +108 -0
- skcomplex/models/mathematics/fractals/_production_law.py +105 -0
- skcomplex/models/mathematics/fractals/_prototile_spec.py +53 -0
- skcomplex/models/mathematics/fractals/_quadratic.py +191 -0
- skcomplex/models/mathematics/fractals/_random_affine_map.py +100 -0
- skcomplex/models/mathematics/fractals/_rewriting_compiler.py +300 -0
- skcomplex/models/mathematics/fractals/_rewriting_error.py +10 -0
- skcomplex/models/mathematics/fractals/_rewriting_loops.py +180 -0
- skcomplex/models/mathematics/fractals/_rewriting_problem_spec.py +30 -0
- skcomplex/models/mathematics/fractals/_rewriting_solver.py +125 -0
- skcomplex/models/mathematics/fractals/_sierpinski_element.py +110 -0
- skcomplex/models/mathematics/fractals/_substitution.py +130 -0
- skcomplex/models/mathematics/fractals/_substitution_law.py +76 -0
- skcomplex/models/mathematics/fractals/_successor_spec.py +23 -0
- skcomplex/models/mathematics/fractals/_word_element.py +94 -0
- skcomplex/models/mathematics/fractals/_word_kernel.py +526 -0
- skcomplex/models/mathematics/fractals/_word_structure_spec.py +110 -0
- skcomplex/models/mathematics/fractals/_words.py +38 -0
- skcomplex/models/mathematics/fractals/types.py +12 -0
- skcomplex/models/mathematics/fractional_dynamics/__init__.py +29 -0
- skcomplex/models/mathematics/fractional_dynamics/_fractional.py +338 -0
- skcomplex/models/mathematics/fractional_dynamics/_oscillator.py +71 -0
- skcomplex/models/mathematics/fractional_dynamics/_relaxation.py +59 -0
- skcomplex/models/mathematics/fractional_dynamics/_van_der_pol.py +66 -0
- skcomplex/models/mathematics/networks/__init__.py +61 -0
- skcomplex/models/mathematics/networks/_copying_vertex.py +50 -0
- skcomplex/models/mathematics/networks/_ensemble_node.py +48 -0
- skcomplex/models/mathematics/networks/_ensembles.py +195 -0
- skcomplex/models/mathematics/networks/_failing.py +58 -0
- skcomplex/models/mathematics/networks/_giant_component.py +52 -0
- skcomplex/models/mathematics/networks/_growth.py +223 -0
- skcomplex/models/mathematics/networks/_hypergraphs.py +131 -0
- skcomplex/models/mathematics/networks/_link.py +21 -0
- skcomplex/models/mathematics/networks/_network_measures.py +59 -0
- skcomplex/models/mathematics/networks/_network_node.py +86 -0
- skcomplex/models/mathematics/networks/_network_walker.py +49 -0
- skcomplex/models/mathematics/networks/_network_walker_view.py +12 -0
- skcomplex/models/mathematics/networks/_node_content.py +47 -0
- skcomplex/models/mathematics/networks/_node_rank.py +57 -0
- skcomplex/models/mathematics/networks/_processes.py +148 -0
- skcomplex/models/mathematics/networks/_regulated_link.py +47 -0
- skcomplex/models/mathematics/networks/_regulated_node.py +43 -0
- skcomplex/models/mathematics/networks/_simplex.py +46 -0
- skcomplex/models/mathematics/networks/_simplex_ageing.py +46 -0
- skcomplex/models/mathematics/networks/_size_biased_move.py +44 -0
- skcomplex/models/mathematics/networks/_structure.py +170 -0
- skcomplex/models/mathematics/networks/_triad_vertex.py +64 -0
- skcomplex/models/mathematics/networks/_triadic.py +114 -0
- skcomplex/models/mathematics/networks/_triadic_regulation.py +65 -0
- skcomplex/models/mathematics/networks/_vertex.py +52 -0
- skcomplex/models/mathematics/networks/_walker_density.py +51 -0
- skcomplex/models/mathematics/stochastic_processes/__init__.py +62 -0
- skcomplex/models/mathematics/stochastic_processes/_ageing_walker.py +68 -0
- skcomplex/models/mathematics/stochastic_processes/_ageing_walker_view.py +15 -0
- skcomplex/models/mathematics/stochastic_processes/_bernoulli_trial.py +61 -0
- skcomplex/models/mathematics/stochastic_processes/_bernoulli_trial_view.py +14 -0
- skcomplex/models/mathematics/stochastic_processes/_branching.py +103 -0
- skcomplex/models/mathematics/stochastic_processes/_counting.py +88 -0
- skcomplex/models/mathematics/stochastic_processes/_fragment.py +91 -0
- skcomplex/models/mathematics/stochastic_processes/_fragment_view.py +13 -0
- skcomplex/models/mathematics/stochastic_processes/_hidden_markov_source.py +46 -0
- skcomplex/models/mathematics/stochastic_processes/_individual_view.py +13 -0
- skcomplex/models/mathematics/stochastic_processes/_intermittency.py +115 -0
- skcomplex/models/mathematics/stochastic_processes/_markov_source.py +41 -0
- skcomplex/models/mathematics/stochastic_processes/_memory_walker.py +57 -0
- skcomplex/models/mathematics/stochastic_processes/_persistent_walker.py +52 -0
- skcomplex/models/mathematics/stochastic_processes/_poisson_counter.py +47 -0
- skcomplex/models/mathematics/stochastic_processes/_queues.py +117 -0
- skcomplex/models/mathematics/stochastic_processes/_random_walker.py +52 -0
- skcomplex/models/mathematics/stochastic_processes/_reducing.py +104 -0
- skcomplex/models/mathematics/stochastic_processes/_reducing_ball.py +63 -0
- skcomplex/models/mathematics/stochastic_processes/_reducing_ball_view.py +14 -0
- skcomplex/models/mathematics/stochastic_processes/_reducing_jump.py +44 -0
- skcomplex/models/mathematics/stochastic_processes/_sources.py +90 -0
- skcomplex/models/mathematics/stochastic_processes/_urns.py +112 -0
- skcomplex/models/mathematics/stochastic_processes/_walks.py +280 -0
- skcomplex/models/mathematics/stochastic_processes/_weakening_particle.py +57 -0
- skcomplex/models/mathematics/stochastic_processes/types.py +8 -0
- skcomplex/models/physics/__init__.py +1 -0
- skcomplex/models/physics/active_matter/__init__.py +95 -0
- skcomplex/models/physics/active_matter/_active_particle.py +88 -0
- skcomplex/models/physics/active_matter/_alignment.py +192 -0
- skcomplex/models/physics/active_matter/_angular_alignment.py +98 -0
- skcomplex/models/physics/active_matter/_angular_diffusion.py +67 -0
- skcomplex/models/physics/active_matter/_binary_collisions.py +126 -0
- skcomplex/models/physics/active_matter/_chemotaxis.py +173 -0
- skcomplex/models/physics/active_matter/_cohesive_particle.py +132 -0
- skcomplex/models/physics/active_matter/_collective.py +327 -0
- skcomplex/models/physics/active_matter/_collisions.py +127 -0
- skcomplex/models/physics/active_matter/_contractile_gel_site.py +81 -0
- skcomplex/models/physics/active_matter/_cucker_smale_alignment.py +89 -0
- skcomplex/models/physics/active_matter/_depot_particle.py +103 -0
- skcomplex/models/physics/active_matter/_flocker.py +46 -0
- skcomplex/models/physics/active_matter/_flocker_view.py +20 -0
- skcomplex/models/physics/active_matter/_flocks.py +258 -0
- skcomplex/models/physics/active_matter/_gels.py +141 -0
- skcomplex/models/physics/active_matter/_heading_alignment.py +73 -0
- skcomplex/models/physics/active_matter/_kinetic_flocks.py +111 -0
- skcomplex/models/physics/active_matter/_landau_de_gennes_energy.py +107 -0
- skcomplex/models/physics/active_matter/_model_b.py +170 -0
- skcomplex/models/physics/active_matter/_nematic_density_site.py +78 -0
- skcomplex/models/physics/active_matter/_nematic_gel_site.py +115 -0
- skcomplex/models/physics/active_matter/_nematic_particle.py +61 -0
- skcomplex/models/physics/active_matter/_nematics.py +323 -0
- skcomplex/models/physics/active_matter/_nonreciprocal.py +214 -0
- skcomplex/models/physics/active_matter/_ornstein_uhlenbeck_particle.py +87 -0
- skcomplex/models/physics/active_matter/_particles.py +323 -0
- skcomplex/models/physics/active_matter/_phoretic_attraction.py +80 -0
- skcomplex/models/physics/active_matter/_polar_fluid.py +119 -0
- skcomplex/models/physics/active_matter/_polar_gel_site.py +120 -0
- skcomplex/models/physics/active_matter/_propulsion_step.py +64 -0
- skcomplex/models/physics/active_matter/_self_propulsion.py +73 -0
- skcomplex/models/physics/active_matter/_tumbler.py +100 -0
- skcomplex/models/physics/active_matter/_tumbler_view.py +23 -0
- skcomplex/models/physics/active_matter/_vicsek_particle.py +61 -0
- skcomplex/models/physics/celestial_mechanics/__init__.py +19 -0
- skcomplex/models/physics/celestial_mechanics/_dipoles.py +160 -0
- skcomplex/models/physics/celestial_mechanics/_kepler_body.py +76 -0
- skcomplex/models/physics/celestial_mechanics/_orbits.py +332 -0
- skcomplex/models/physics/celestial_mechanics/_rotating_frame_body.py +72 -0
- skcomplex/models/physics/celestial_mechanics/_sitnikov_body.py +54 -0
- skcomplex/models/physics/celestial_mechanics/types.py +6 -0
- skcomplex/models/physics/climate/__init__.py +60 -0
- skcomplex/models/physics/climate/_carbon_cycle.py +169 -0
- skcomplex/models/physics/climate/_climate_anomaly.py +55 -0
- skcomplex/models/physics/climate/_daisyworld.py +158 -0
- skcomplex/models/physics/climate/_delayed_oscillator.py +68 -0
- skcomplex/models/physics/climate/_early_warning.py +102 -0
- skcomplex/models/physics/climate/_energy_balance.py +207 -0
- skcomplex/models/physics/climate/_geodynamo.py +86 -0
- skcomplex/models/physics/climate/_ice_ages.py +179 -0
- skcomplex/models/physics/climate/_ice_albedo_climate.py +100 -0
- skcomplex/models/physics/climate/_latitude_band.py +156 -0
- skcomplex/models/physics/climate/_lorenz84.py +91 -0
- skcomplex/models/physics/climate/_lorenz96.py +67 -0
- skcomplex/models/physics/climate/_low_order.py +162 -0
- skcomplex/models/physics/climate/_net_energy.py +210 -0
- skcomplex/models/physics/climate/_ramped_fold.py +92 -0
- skcomplex/models/physics/climate/_saltzman_maasch.py +123 -0
- skcomplex/models/physics/climate/_soil.py +116 -0
- skcomplex/models/physics/climate/_stochastic_energy_balance.py +124 -0
- skcomplex/models/physics/climate/_tipping.py +141 -0
- skcomplex/models/physics/climate/_tipping_types.py +159 -0
- skcomplex/models/physics/climate/_van_der_pol_ice_ages.py +101 -0
- skcomplex/models/physics/climate/_variability.py +103 -0
- skcomplex/models/physics/common/__init__.py +6 -0
- skcomplex/models/physics/common/fields/__init__.py +14 -0
- skcomplex/models/physics/common/fields/_landau_energy.py +76 -0
- skcomplex/models/physics/common/fields/_phase_field.py +43 -0
- skcomplex/models/physics/common/fields/_swift_hohenberg_energy.py +74 -0
- skcomplex/models/physics/common/fields/_transports.py +119 -0
- skcomplex/models/physics/common/mechanics/__init__.py +5 -0
- skcomplex/models/physics/common/mechanics/_reflection.py +139 -0
- skcomplex/models/physics/common/oscillators/__init__.py +13 -0
- skcomplex/models/physics/common/oscillators/_kuramoto_coupling.py +140 -0
- skcomplex/models/physics/common/oscillators/_phase_oscillator.py +68 -0
- skcomplex/models/physics/common/oscillators/_sited_oscillator.py +55 -0
- skcomplex/models/physics/common/oscillators/_stuart_landau.py +106 -0
- skcomplex/models/physics/common/particles/__init__.py +28 -0
- skcomplex/models/physics/common/particles/_constant_force.py +65 -0
- skcomplex/models/physics/common/particles/_damping.py +72 -0
- skcomplex/models/physics/common/particles/_gravity.py +74 -0
- skcomplex/models/physics/common/particles/_harmonic_potential.py +77 -0
- skcomplex/models/physics/common/particles/_lammps.py +47 -0
- skcomplex/models/physics/common/particles/_langevin_thermostat.py +103 -0
- skcomplex/models/physics/common/particles/_lennard_jones.py +87 -0
- skcomplex/models/physics/common/particles/_mass_point.py +57 -0
- skcomplex/models/physics/common/particles/_potential_energy.py +56 -0
- skcomplex/models/physics/common/particles/_soft_sphere.py +82 -0
- skcomplex/models/physics/common/particles/_spring.py +78 -0
- skcomplex/models/physics/common/particles/_utils.py +25 -0
- skcomplex/models/physics/common/quantum/__init__.py +18 -0
- skcomplex/models/physics/common/quantum/_mode.py +46 -0
- skcomplex/models/physics/common/quantum/_quantum.py +127 -0
- skcomplex/models/physics/common/quantum/_qubit.py +61 -0
- skcomplex/models/physics/common/quantum/_site.py +49 -0
- skcomplex/models/physics/common/quantum/_spin.py +92 -0
- skcomplex/models/physics/common/spins/__init__.py +15 -0
- skcomplex/models/physics/common/spins/_ising_sampling.py +75 -0
- skcomplex/models/physics/common/spins/_potts_sampling.py +73 -0
- skcomplex/models/physics/common/spins/_spin_sampling.py +100 -0
- skcomplex/models/physics/common/spins/_thermal_sampling.py +105 -0
- skcomplex/models/physics/common/spins/_xy_sampling.py +67 -0
- skcomplex/models/physics/cosmology/__init__.py +8 -0
- skcomplex/models/physics/cosmology/_expansion.py +148 -0
- skcomplex/models/physics/criticality/__init__.py +29 -0
- skcomplex/models/physics/criticality/_absorbing.py +210 -0
- skcomplex/models/physics/criticality/_avalanche.py +69 -0
- skcomplex/models/physics/criticality/_crackling_noise.py +129 -0
- skcomplex/models/physics/criticality/_criticality.py +235 -0
- skcomplex/models/physics/criticality/_evolutionary_learning.py +231 -0
- skcomplex/models/physics/criticality/_fire.py +70 -0
- skcomplex/models/physics/criticality/_forest.py +55 -0
- skcomplex/models/physics/criticality/_learning.py +175 -0
- skcomplex/models/physics/criticality/_sandpile_cell.py +47 -0
- skcomplex/models/physics/fluids/__init__.py +49 -0
- skcomplex/models/physics/fluids/_bhatnagar_gross_krook.py +54 -0
- skcomplex/models/physics/fluids/_boussinesq.py +62 -0
- skcomplex/models/physics/fluids/_burgers.py +39 -0
- skcomplex/models/physics/fluids/_carleman_gas.py +61 -0
- skcomplex/models/physics/fluids/_flows.py +436 -0
- skcomplex/models/physics/fluids/_kinetic_equations.py +327 -0
- skcomplex/models/physics/fluids/_kinetics.py +147 -0
- skcomplex/models/physics/fluids/_kuramoto_sivashinsky.py +41 -0
- skcomplex/models/physics/fluids/_lattice_gases.py +217 -0
- skcomplex/models/physics/fluids/_marangoni.py +136 -0
- skcomplex/models/physics/fluids/_shallow_water.py +55 -0
- skcomplex/models/physics/fluids/_vorticity.py +56 -0
- skcomplex/models/physics/fluids/_wave_number.py +50 -0
- skcomplex/models/physics/heat/__init__.py +13 -0
- skcomplex/models/physics/heat/_cooling.py +96 -0
- skcomplex/models/physics/heat/_heat.py +182 -0
- skcomplex/models/physics/mechanics/__init__.py +93 -0
- skcomplex/models/physics/mechanics/_ballistic_pendulum.py +80 -0
- skcomplex/models/physics/mechanics/_bouncing_ball.py +51 -0
- skcomplex/models/physics/mechanics/_cart_pendulum.py +92 -0
- skcomplex/models/physics/mechanics/_cart_pendulum_interaction.py +57 -0
- skcomplex/models/physics/mechanics/_clock_pendulum.py +94 -0
- skcomplex/models/physics/mechanics/_clock_pendulum_interaction.py +60 -0
- skcomplex/models/physics/mechanics/_disc_billiard.py +90 -0
- skcomplex/models/physics/mechanics/_double_pendulum.py +95 -0
- skcomplex/models/physics/mechanics/_double_pendulum_interaction.py +53 -0
- skcomplex/models/physics/mechanics/_elastic_collision.py +78 -0
- skcomplex/models/physics/mechanics/_gyroscope.py +105 -0
- skcomplex/models/physics/mechanics/_gyroscope_interaction.py +57 -0
- skcomplex/models/physics/mechanics/_hanging_ball.py +65 -0
- skcomplex/models/physics/mechanics/_magnet.py +70 -0
- skcomplex/models/physics/mechanics/_mechanics.py +426 -0
- skcomplex/models/physics/mechanics/_parametric_pendulum.py +75 -0
- skcomplex/models/physics/mechanics/_parametric_pendulum_interaction.py +56 -0
- skcomplex/models/physics/mechanics/_pendulum.py +73 -0
- skcomplex/models/physics/mechanics/_pendulum_interaction.py +52 -0
- skcomplex/models/physics/mechanics/_pendulum_spring.py +68 -0
- skcomplex/models/physics/mechanics/_pendulums.py +547 -0
- skcomplex/models/physics/mechanics/_rotating_ball.py +66 -0
- skcomplex/models/physics/mechanics/_rotating_swing.py +100 -0
- skcomplex/models/physics/mechanics/_rotating_swing_interaction.py +70 -0
- skcomplex/models/physics/mechanics/_rotations.py +244 -0
- skcomplex/models/physics/mechanics/_springs.py +176 -0
- skcomplex/models/physics/mechanics/_support_spring.py +65 -0
- skcomplex/models/physics/mechanics/_wells.py +102 -0
- skcomplex/models/physics/nonlinear_oscillators/__init__.py +26 -0
- skcomplex/models/physics/nonlinear_oscillators/_adler_phase.py +73 -0
- skcomplex/models/physics/nonlinear_oscillators/_billiards.py +137 -0
- skcomplex/models/physics/nonlinear_oscillators/_duffing.py +78 -0
- skcomplex/models/physics/nonlinear_oscillators/_henon_heiles.py +57 -0
- skcomplex/models/physics/nonlinear_oscillators/_mushroom_billiard.py +96 -0
- skcomplex/models/physics/nonlinear_oscillators/_oscillators.py +313 -0
- skcomplex/models/physics/nonlinear_oscillators/_sinai_billiard.py +101 -0
- skcomplex/models/physics/nonlinear_oscillators/_van_der_pol.py +92 -0
- skcomplex/models/physics/oceanography/__init__.py +12 -0
- skcomplex/models/physics/oceanography/_gyres.py +145 -0
- skcomplex/models/physics/oceanography/_quasi_geostrophic_site.py +66 -0
- skcomplex/models/physics/oceanography/_thermohaline.py +133 -0
- skcomplex/models/physics/pattern_formation/__init__.py +18 -0
- skcomplex/models/physics/pattern_formation/_conserved.py +168 -0
- skcomplex/models/physics/pattern_formation/_ginzburg_landau.py +83 -0
- skcomplex/models/physics/pattern_formation/_ordering.py +183 -0
- skcomplex/models/physics/pattern_formation/_pattern_field.py +37 -0
- skcomplex/models/physics/pattern_formation/_patterns.py +135 -0
- skcomplex/models/physics/seismology/__init__.py +11 -0
- skcomplex/models/physics/seismology/_faults.py +118 -0
- skcomplex/models/physics/seismology/_spring_blocks.py +175 -0
- skcomplex/models/physics/soft_matter/__init__.py +76 -0
- skcomplex/models/physics/soft_matter/_anomalous.py +331 -0
- skcomplex/models/physics/soft_matter/_brownian.py +137 -0
- skcomplex/models/physics/soft_matter/_brownian_particle.py +58 -0
- skcomplex/models/physics/soft_matter/_colored_noise.py +137 -0
- skcomplex/models/physics/soft_matter/_continuous_time_walker.py +62 -0
- skcomplex/models/physics/soft_matter/_diffusion.py +418 -0
- skcomplex/models/physics/soft_matter/_double_well.py +57 -0
- skcomplex/models/physics/soft_matter/_flashing_sawtooth.py +82 -0
- skcomplex/models/physics/soft_matter/_fractional_walker.py +54 -0
- skcomplex/models/physics/soft_matter/_friction.py +214 -0
- skcomplex/models/physics/soft_matter/_levy_flier.py +54 -0
- skcomplex/models/physics/soft_matter/_levy_walker.py +67 -0
- skcomplex/models/physics/soft_matter/_modulated_particle.py +76 -0
- skcomplex/models/physics/soft_matter/_optical_trap.py +93 -0
- skcomplex/models/physics/soft_matter/_ratchets.py +163 -0
- skcomplex/models/physics/soft_matter/_scaled_walker.py +57 -0
- skcomplex/models/physics/soft_matter/_speckle_field.py +81 -0
- skcomplex/models/physics/soft_matter/_thermal_noise.py +52 -0
- skcomplex/models/physics/soft_matter/_tilted_washboard.py +70 -0
- skcomplex/models/physics/soft_matter/_transient_walker.py +61 -0
- skcomplex/models/physics/soft_matter/_traps.py +166 -0
- skcomplex/models/physics/soft_matter/_wall_particle.py +72 -0
- skcomplex/models/physics/statistical_mechanics/__init__.py +114 -0
- skcomplex/models/physics/statistical_mechanics/_absorbing_processes.py +156 -0
- skcomplex/models/physics/statistical_mechanics/_boltzmann_average.py +44 -0
- skcomplex/models/physics/statistical_mechanics/_boltzmann_sum.py +83 -0
- skcomplex/models/physics/statistical_mechanics/_bond_sampling.py +46 -0
- skcomplex/models/physics/statistical_mechanics/_bond_spin.py +76 -0
- skcomplex/models/physics/statistical_mechanics/_contact_site.py +85 -0
- skcomplex/models/physics/statistical_mechanics/_dephasing.py +59 -0
- skcomplex/models/physics/statistical_mechanics/_disk.py +36 -0
- skcomplex/models/physics/statistical_mechanics/_driven_particles.py +250 -0
- skcomplex/models/physics/statistical_mechanics/_energy_level.py +30 -0
- skcomplex/models/physics/statistical_mechanics/_exclusion_hops.py +76 -0
- skcomplex/models/physics/statistical_mechanics/_exclusion_site.py +61 -0
- skcomplex/models/physics/statistical_mechanics/_fully_connected_spins.py +232 -0
- skcomplex/models/physics/statistical_mechanics/_gases.py +156 -0
- skcomplex/models/physics/statistical_mechanics/_graph_spins.py +93 -0
- skcomplex/models/physics/statistical_mechanics/_ising_spin.py +63 -0
- skcomplex/models/physics/statistical_mechanics/_kinetic_temperature.py +66 -0
- skcomplex/models/physics/statistical_mechanics/_master_equations.py +171 -0
- skcomplex/models/physics/statistical_mechanics/_mattis_spin.py +79 -0
- skcomplex/models/physics/statistical_mechanics/_maxwell_boltzmann.py +96 -0
- skcomplex/models/physics/statistical_mechanics/_microstate.py +102 -0
- skcomplex/models/physics/statistical_mechanics/_order_parameter.py +90 -0
- skcomplex/models/physics/statistical_mechanics/_particle_site.py +41 -0
- skcomplex/models/physics/statistical_mechanics/_percolation.py +60 -0
- skcomplex/models/physics/statistical_mechanics/_percolation_site.py +73 -0
- skcomplex/models/physics/statistical_mechanics/_potts_spin.py +58 -0
- skcomplex/models/physics/statistical_mechanics/_processes.py +355 -0
- skcomplex/models/physics/statistical_mechanics/_q2r_spin.py +51 -0
- skcomplex/models/physics/statistical_mechanics/_quantum_spins.py +153 -0
- skcomplex/models/physics/statistical_mechanics/_random_energy.py +68 -0
- skcomplex/models/physics/statistical_mechanics/_reservoir.py +81 -0
- skcomplex/models/physics/statistical_mechanics/_spin_glasses.py +203 -0
- skcomplex/models/physics/statistical_mechanics/_spins.py +200 -0
- skcomplex/models/physics/statistical_mechanics/_susceptibility.py +112 -0
- skcomplex/models/physics/statistical_mechanics/_traps.py +135 -0
- skcomplex/models/physics/statistical_mechanics/_tree_node.py +48 -0
- skcomplex/models/physics/statistical_mechanics/_urns.py +107 -0
- skcomplex/models/physics/statistical_mechanics/_walker.py +81 -0
- skcomplex/models/physics/statistical_mechanics/_walker_view.py +20 -0
- skcomplex/models/physics/statistical_mechanics/_xxz_exchange.py +67 -0
- skcomplex/models/physics/statistical_mechanics/_xy_spin.py +58 -0
- skcomplex/models/physics/statistical_mechanics/_zeeman_field.py +56 -0
- skcomplex/models/physics/statistical_mechanics/_zero_range_hop.py +86 -0
- skcomplex/models/physics/statistical_mechanics/_zero_range_hops.py +81 -0
- skcomplex/models/physics/statistical_mechanics/_zone.py +78 -0
- skcomplex/models/physics/synchronization/__init__.py +64 -0
- skcomplex/models/physics/synchronization/_aggregate_averaging.py +63 -0
- skcomplex/models/physics/synchronization/_amplitude_death.py +278 -0
- skcomplex/models/physics/synchronization/_chaos.py +152 -0
- skcomplex/models/physics/synchronization/_diffusive_coupling.py +69 -0
- skcomplex/models/physics/synchronization/_edge_coupling.py +50 -0
- skcomplex/models/physics/synchronization/_hypergraphs.py +166 -0
- skcomplex/models/physics/synchronization/_integrate_and_fire_oscillator.py +80 -0
- skcomplex/models/physics/synchronization/_kuramoto.py +423 -0
- skcomplex/models/physics/synchronization/_link.py +46 -0
- skcomplex/models/physics/synchronization/_logistic_coupling.py +78 -0
- skcomplex/models/physics/synchronization/_logistic_node.py +59 -0
- skcomplex/models/physics/synchronization/_logistic_unit.py +43 -0
- skcomplex/models/physics/synchronization/_networks.py +184 -0
- skcomplex/models/physics/synchronization/_pulses.py +138 -0
- skcomplex/models/physics/synchronization/_rossler_oscillator.py +95 -0
- skcomplex/models/physics/synchronization/_swarmalator.py +48 -0
- skcomplex/models/physics/synchronization/_swarmalators.py +182 -0
- skcomplex/models/physics/synchronization/_utils.py +29 -0
- skcomplex/models/physics/synchronization/_winfree_mean_field.py +62 -0
- skcomplex/models/physics/waves/__init__.py +23 -0
- skcomplex/models/physics/waves/_charged.py +203 -0
- skcomplex/models/physics/waves/_driven_anchor.py +63 -0
- skcomplex/models/physics/waves/_lattice_hamiltonian.py +60 -0
- skcomplex/models/physics/waves/_position_dephasing.py +64 -0
- skcomplex/models/physics/waves/_quantum.py +125 -0
- skcomplex/models/physics/waves/_strings.py +169 -0
- skcomplex/models/physics/waves/_wave_function.py +79 -0
- skcomplex/models/physics/waves/_wave_string.py +52 -0
- skcomplex/models/social/__init__.py +1 -0
- skcomplex/models/social/cooperation/__init__.py +34 -0
- skcomplex/models/social/cooperation/_contributor.py +62 -0
- skcomplex/models/social/cooperation/_dilemma.py +56 -0
- skcomplex/models/social/cooperation/_hyperedge_goods.py +54 -0
- skcomplex/models/social/cooperation/_hypergraph_games.py +249 -0
- skcomplex/models/social/cooperation/_prisoner.py +56 -0
- skcomplex/models/social/cooperation/_prisoners_dilemma.py +126 -0
- skcomplex/models/social/cooperation/_public_goods.py +54 -0
- skcomplex/models/social/cooperation/_simplicial_dilemma.py +119 -0
- skcomplex/models/social/cooperation/_spatial_games.py +159 -0
- skcomplex/models/social/cooperation/_strategist.py +57 -0
- skcomplex/models/social/cooperation/_strategist_view.py +14 -0
- skcomplex/models/social/cooperation/_tournament.py +126 -0
- skcomplex/models/social/cooperation/_tournaments.py +87 -0
- skcomplex/models/social/crowds/__init__.py +46 -0
- skcomplex/models/social/crowds/_criminal_contagion.py +108 -0
- skcomplex/models/social/crowds/_criminality.py +223 -0
- skcomplex/models/social/crowds/_crowding.py +115 -0
- skcomplex/models/social/crowds/_deterrence.py +101 -0
- skcomplex/models/social/crowds/_evacuation.py +196 -0
- skcomplex/models/social/crowds/_guidance.py +69 -0
- skcomplex/models/social/crowds/_motivation.py +67 -0
- skcomplex/models/social/crowds/_pedestrians.py +85 -0
- skcomplex/models/social/crowds/_recruitment.py +90 -0
- skcomplex/models/social/crowds/_security_agents.py +48 -0
- skcomplex/models/social/crowds/_social_repulsion.py +86 -0
- skcomplex/models/social/crowds/_walking.py +186 -0
- skcomplex/models/social/crowds/_walls.py +69 -0
- skcomplex/models/social/language/__init__.py +13 -0
- skcomplex/models/social/language/_language.py +30 -0
- skcomplex/models/social/language/_least_effort.py +69 -0
- skcomplex/models/social/language/_word.py +39 -0
- skcomplex/models/social/language/_word_frequencies.py +48 -0
- skcomplex/models/social/opinion_dynamics/__init__.py +142 -0
- skcomplex/models/social/opinion_dynamics/_adopter.py +61 -0
- skcomplex/models/social/opinion_dynamics/_adopter_view.py +14 -0
- skcomplex/models/social/opinion_dynamics/_adoption.py +83 -0
- skcomplex/models/social/opinion_dynamics/_axelrod.py +160 -0
- skcomplex/models/social/opinion_dynamics/_believer.py +71 -0
- skcomplex/models/social/opinion_dynamics/_believer_view.py +16 -0
- skcomplex/models/social/opinion_dynamics/_bounded_confidence.py +126 -0
- skcomplex/models/social/opinion_dynamics/_citizen.py +49 -0
- skcomplex/models/social/opinion_dynamics/_citizen_view.py +12 -0
- skcomplex/models/social/opinion_dynamics/_club_member.py +78 -0
- skcomplex/models/social/opinion_dynamics/_coevolution.py +187 -0
- skcomplex/models/social/opinion_dynamics/_coevolving_voter.py +63 -0
- skcomplex/models/social/opinion_dynamics/_cognition.py +73 -0
- skcomplex/models/social/opinion_dynamics/_complex_agent.py +58 -0
- skcomplex/models/social/opinion_dynamics/_complex_agent_view.py +13 -0
- skcomplex/models/social/opinion_dynamics/_confidence_coupling.py +76 -0
- skcomplex/models/social/opinion_dynamics/_confident.py +50 -0
- skcomplex/models/social/opinion_dynamics/_conventions.py +44 -0
- skcomplex/models/social/opinion_dynamics/_conversations.py +116 -0
- skcomplex/models/social/opinion_dynamics/_cultural_influence.py +93 -0
- skcomplex/models/social/opinion_dynamics/_diffusion.py +205 -0
- skcomplex/models/social/opinion_dynamics/_discussant.py +60 -0
- skcomplex/models/social/opinion_dynamics/_discussant_view.py +14 -0
- skcomplex/models/social/opinion_dynamics/_discussions.py +51 -0
- skcomplex/models/social/opinion_dynamics/_encounters.py +48 -0
- skcomplex/models/social/opinion_dynamics/_hypergraph_consensus.py +106 -0
- skcomplex/models/social/opinion_dynamics/_influencee.py +70 -0
- skcomplex/models/social/opinion_dynamics/_influencee_view.py +16 -0
- skcomplex/models/social/opinion_dynamics/_kinetic_opinion.py +287 -0
- skcomplex/models/social/opinion_dynamics/_majority_voter.py +43 -0
- skcomplex/models/social/opinion_dynamics/_namer.py +53 -0
- skcomplex/models/social/opinion_dynamics/_namer_view.py +13 -0
- skcomplex/models/social/opinion_dynamics/_naming_games.py +68 -0
- skcomplex/models/social/opinion_dynamics/_opinion.py +39 -0
- skcomplex/models/social/opinion_dynamics/_persuader.py +52 -0
- skcomplex/models/social/opinion_dynamics/_persuader_view.py +12 -0
- skcomplex/models/social/opinion_dynamics/_persuasion.py +247 -0
- skcomplex/models/social/opinion_dynamics/_random_pairs.py +53 -0
- skcomplex/models/social/opinion_dynamics/_schedule.py +39 -0
- skcomplex/models/social/opinion_dynamics/_separation.py +71 -0
- skcomplex/models/social/opinion_dynamics/_social_impact.py +60 -0
- skcomplex/models/social/opinion_dynamics/_standardization.py +212 -0
- skcomplex/models/social/opinion_dynamics/_thinker.py +61 -0
- skcomplex/models/social/opinion_dynamics/_thinker_view.py +15 -0
- skcomplex/models/social/opinion_dynamics/_three_body_consensus.py +71 -0
- skcomplex/models/social/opinion_dynamics/_tie.py +21 -0
- skcomplex/models/social/opinion_dynamics/_variant_voter.py +67 -0
- skcomplex/models/social/opinion_dynamics/_variant_voter_view.py +14 -0
- skcomplex/models/social/opinion_dynamics/_variant_voting.py +63 -0
- skcomplex/models/social/opinion_dynamics/_village.py +61 -0
- skcomplex/models/social/opinion_dynamics/_village_view.py +14 -0
- skcomplex/models/social/opinion_dynamics/_voter.py +49 -0
- skcomplex/models/social/opinion_dynamics/_voter_imitation.py +48 -0
- skcomplex/models/social/opinion_dynamics/_voter_view.py +12 -0
- skcomplex/models/social/opinion_dynamics/_voters.py +197 -0
- skcomplex/models/social/organizations/__init__.py +68 -0
- skcomplex/models/social/organizations/_arms_race.py +34 -0
- skcomplex/models/social/organizations/_burden.py +38 -0
- skcomplex/models/social/organizations/_city_resident.py +41 -0
- skcomplex/models/social/organizations/_contender_view.py +14 -0
- skcomplex/models/social/organizations/_contest.py +32 -0
- skcomplex/models/social/organizations/_daily_movements.py +144 -0
- skcomplex/models/social/organizations/_eater.py +282 -0
- skcomplex/models/social/organizations/_eater_view.py +24 -0
- skcomplex/models/social/organizations/_employee.py +173 -0
- skcomplex/models/social/organizations/_employee_view.py +35 -0
- skcomplex/models/social/organizations/_employment.py +127 -0
- skcomplex/models/social/organizations/_execution.py +79 -0
- skcomplex/models/social/organizations/_gravity_contact.py +69 -0
- skcomplex/models/social/organizations/_hierarchies.py +174 -0
- skcomplex/models/social/organizations/_obesity.py +131 -0
- skcomplex/models/social/organizations/_premises.py +75 -0
- skcomplex/models/social/organizations/_premises_view.py +16 -0
- skcomplex/models/social/organizations/_queues.py +52 -0
- skcomplex/models/social/organizations/_restaurant.py +59 -0
- skcomplex/models/social/organizations/_restaurant_view.py +14 -0
- skcomplex/models/social/organizations/_sabotage.py +183 -0
- skcomplex/models/social/organizations/_supervisor.py +25 -0
- skcomplex/models/social/organizations/_task.py +65 -0
- skcomplex/models/social/organizations/_task_view.py +15 -0
- skcomplex/models/social/organizations/_trafficking.py +184 -0
- skcomplex/models/social/organizations/_traps.py +322 -0
- skcomplex/models/social/organizations/_traveller.py +55 -0
- skcomplex/models/social/organizations/_traveller_view.py +13 -0
- skcomplex/models/social/organizations/_urban_scaling.py +72 -0
- skcomplex/models/social/segregation/__init__.py +21 -0
- skcomplex/models/social/segregation/_block_moves.py +127 -0
- skcomplex/models/social/segregation/_blocks.py +111 -0
- skcomplex/models/social/segregation/_dweller.py +70 -0
- skcomplex/models/social/segregation/_dweller_view.py +16 -0
- skcomplex/models/social/segregation/_relocation.py +60 -0
- skcomplex/models/social/segregation/_resident.py +55 -0
- skcomplex/models/social/segregation/_resident_view.py +13 -0
- skcomplex/models/social/segregation/_schelling.py +75 -0
- skcomplex/models/social/spreading/__init__.py +37 -0
- skcomplex/models/social/spreading/_cascades.py +118 -0
- skcomplex/models/social/spreading/_exposure.py +166 -0
- skcomplex/models/social/spreading/_growing_word.py +55 -0
- skcomplex/models/social/spreading/_growing_word_view.py +13 -0
- skcomplex/models/social/spreading/_growth.py +52 -0
- skcomplex/models/social/spreading/_infective.py +55 -0
- skcomplex/models/social/spreading/_listeners.py +41 -0
- skcomplex/models/social/spreading/_participant.py +50 -0
- skcomplex/models/social/spreading/_rumour_contacts.py +81 -0
- skcomplex/models/social/spreading/_rumours.py +57 -0
- skcomplex/models/social/spreading/_simplicial.py +120 -0
- skcomplex/models/social/spreading/_simplicial_infection.py +64 -0
- skcomplex/models/social/spreading/_threshold_activation.py +50 -0
- skcomplex/models/social/spreading/_threshold_node_view.py +13 -0
- skcomplex/models/social/spreading/_writing.py +86 -0
- skcomplex/models/types.py +10 -0
- skcomplex/specs/__init__.py +198 -0
- skcomplex/specs/_accelerated_spec.py +46 -0
- skcomplex/specs/_agent_snapshot_spec.py +34 -0
- skcomplex/specs/_agent_state_spec.py +26 -0
- skcomplex/specs/_arguments_spec.py +60 -0
- skcomplex/specs/_axis_spec.py +59 -0
- skcomplex/specs/_base_record_spec.py +16 -0
- skcomplex/specs/_base_spec.py +73 -0
- skcomplex/specs/_base_structure_spec.py +173 -0
- skcomplex/specs/_batch_matching_spec.py +23 -0
- skcomplex/specs/_breakpoints_spec.py +58 -0
- skcomplex/specs/_call_spec.py +64 -0
- skcomplex/specs/_capacity_rows_spec.py +120 -0
- skcomplex/specs/_cardinality_spec.py +58 -0
- skcomplex/specs/_cascade_record_spec.py +36 -0
- skcomplex/specs/_clamp_spec.py +54 -0
- skcomplex/specs/_clause_spec.py +42 -0
- skcomplex/specs/_compiled_flow_spec.py +20 -0
- skcomplex/specs/_composed_rule_spec.py +33 -0
- skcomplex/specs/_continuous_matching_spec.py +48 -0
- skcomplex/specs/_control_solution_spec.py +54 -0
- skcomplex/specs/_control_spec.py +21 -0
- skcomplex/specs/_covariance_adaptation_spec.py +25 -0
- skcomplex/specs/_dataset_spec.py +85 -0
- skcomplex/specs/_delay_spec.py +27 -0
- skcomplex/specs/_dialect_spec.py +207 -0
- skcomplex/specs/_differential_evolution_spec.py +33 -0
- skcomplex/specs/_direction_spec.py +44 -0
- skcomplex/specs/_draw_spec.py +273 -0
- skcomplex/specs/_entry_spec.py +403 -0
- skcomplex/specs/_event_record_spec.py +37 -0
- skcomplex/specs/_evolution_strategy_spec.py +25 -0
- skcomplex/specs/_extremal_record_spec.py +32 -0
- skcomplex/specs/_fractional_rows_spec.py +33 -0
- skcomplex/specs/_fractional_state_spec.py +30 -0
- skcomplex/specs/_held_reduction_spec.py +29 -0
- skcomplex/specs/_hilbert_spec.py +75 -0
- skcomplex/specs/_hyperedge_reduction_spec.py +38 -0
- skcomplex/specs/_issue_spec.py +52 -0
- skcomplex/specs/_iterative_matching_spec.py +39 -0
- skcomplex/specs/_jump_channels_spec.py +40 -0
- skcomplex/specs/_jump_path_spec.py +29 -0
- skcomplex/specs/_layer_spec.py +47 -0
- skcomplex/specs/_layout_spec.py +158 -0
- skcomplex/specs/_local_operator_spec.py +72 -0
- skcomplex/specs/_lookup_spec.py +33 -0
- skcomplex/specs/_loop_spec.py +17 -0
- skcomplex/specs/_lowered_functions_spec.py +71 -0
- skcomplex/specs/_match_spec.py +37 -0
- skcomplex/specs/_matrix_law_spec.py +31 -0
- skcomplex/specs/_move_spec.py +69 -0
- skcomplex/specs/_neighbor_read_spec.py +83 -0
- skcomplex/specs/_neighbor_reduction_spec.py +39 -0
- skcomplex/specs/_network_rows_spec.py +124 -0
- skcomplex/specs/_network_snapshot_spec.py +61 -0
- skcomplex/specs/_noise_process_spec.py +41 -0
- skcomplex/specs/_objective_spec.py +39 -0
- skcomplex/specs/_observable_spec.py +79 -0
- skcomplex/specs/_operator_spec.py +170 -0
- skcomplex/specs/_orders_spec.py +16 -0
- skcomplex/specs/_outer_totalistic_spec.py +38 -0
- skcomplex/specs/_owners_spec.py +28 -0
- skcomplex/specs/_pair_read_spec.py +38 -0
- skcomplex/specs/_parameter_spec.py +81 -0
- skcomplex/specs/_parameters_spec.py +26 -0
- skcomplex/specs/_particle_swarm_spec.py +33 -0
- skcomplex/specs/_partner_spec.py +98 -0
- skcomplex/specs/_partner_switch_spec.py +39 -0
- skcomplex/specs/_phase_spec.py +61 -0
- skcomplex/specs/_phases_schedule_spec.py +59 -0
- skcomplex/specs/_plan_spec.py +18 -0
- skcomplex/specs/_planned_partition_spec.py +30 -0
- skcomplex/specs/_queue_spec.py +46 -0
- skcomplex/specs/_radius_spec.py +66 -0
- skcomplex/specs/_random_search_spec.py +51 -0
- skcomplex/specs/_read_spec.py +45 -0
- skcomplex/specs/_reduction_spec.py +48 -0
- skcomplex/specs/_renewal_record_spec.py +49 -0
- skcomplex/specs/_requirement_spec.py +32 -0
- skcomplex/specs/_role_spec.py +54 -0
- skcomplex/specs/_run_result_spec.py +52 -0
- skcomplex/specs/_run_state_spec.py +41 -0
- skcomplex/specs/_sampled_draw_spec.py +32 -0
- skcomplex/specs/_sampler_spec.py +57 -0
- skcomplex/specs/_samples_spec.py +29 -0
- skcomplex/specs/_schedule_spec.py +17 -0
- skcomplex/specs/_sector_spec.py +31 -0
- skcomplex/specs/_segment_spec.py +21 -0
- skcomplex/specs/_series_spec.py +29 -0
- skcomplex/specs/_signature_spec.py +55 -0
- skcomplex/specs/_snapshots_spec.py +56 -0
- skcomplex/specs/_stable_matching_spec.py +58 -0
- skcomplex/specs/_state_spec.py +138 -0
- skcomplex/specs/_step_spec.py +39 -0
- skcomplex/specs/_structure_state_spec.py +30 -0
- skcomplex/specs/_support_spec.py +76 -0
- skcomplex/specs/_symmetry_spec.py +59 -0
- skcomplex/specs/_table_spec.py +42 -0
- skcomplex/specs/_table_values_spec.py +36 -0
- skcomplex/specs/_tensor_spec.py +197 -0
- skcomplex/specs/_topology_request_spec.py +97 -0
- skcomplex/specs/_totalistic_spec.py +37 -0
- skcomplex/specs/_unknown_spec.py +22 -0
- skcomplex/specs/_validation_report_spec.py +62 -0
- skcomplex/specs/_variable_spec.py +124 -0
- skcomplex/specs/_visual_spec.py +30 -0
- skcomplex/specs/_weight_spec.py +16 -0
- skcomplex/specs/_wiener_block_spec.py +31 -0
- skcomplex/specs/_wiener_process_spec.py +54 -0
- skcomplex/types.py +140 -0
|
@@ -0,0 +1,409 @@
|
|
|
1
|
+
"""Read derivatives and lags of states through their companion states, and solve equations for highest derivatives."""
|
|
2
|
+
|
|
3
|
+
# Author: Georgios Douzas <gdouzas@icloud.com>
|
|
4
|
+
# License: MIT
|
|
5
|
+
|
|
6
|
+
from __future__ import annotations
|
|
7
|
+
|
|
8
|
+
import itertools
|
|
9
|
+
from collections.abc import Callable
|
|
10
|
+
from types import SimpleNamespace
|
|
11
|
+
|
|
12
|
+
import numpy as np
|
|
13
|
+
import numpy.typing as npt
|
|
14
|
+
from sage.all__sagemath_symbolics import SR, Expression, matrix, solve
|
|
15
|
+
from sage.modules.free_module_element import FreeModuleElement
|
|
16
|
+
|
|
17
|
+
from ....core.laws import BaseLaw, BoundaryLaw, CrossingLaw, EquationLaw, JumpLaw, NoiseLaw, RateLaw, UpdateLaw
|
|
18
|
+
from ....core.laws.utils import reductions_in
|
|
19
|
+
from ....core.spaces import StaticTime
|
|
20
|
+
from ....errors import ValidationError
|
|
21
|
+
from ....specs import CallSpec
|
|
22
|
+
from ....specs._orders_spec import _OrdersSpec
|
|
23
|
+
from ....types import Array, VariableKind
|
|
24
|
+
from ..._utils import components_of, declarations_of, symbol, vector
|
|
25
|
+
from ...problems import BlockSpec, KernelSpec
|
|
26
|
+
from ...problems._relation_spec import _RelationSpec
|
|
27
|
+
from .._base import BasePass
|
|
28
|
+
from .._compilation import Compilation
|
|
29
|
+
from .._laws import _KERNEL_FREE_LAWS
|
|
30
|
+
from .._renewal_law import RenewalLaw
|
|
31
|
+
from ._complex import LowerComplexPass
|
|
32
|
+
|
|
33
|
+
_EQUATION_UNKNOWNS = 6
|
|
34
|
+
|
|
35
|
+
|
|
36
|
+
class OrdersPass(BasePass):
|
|
37
|
+
"""Pass that reads derivatives and lags through companion states, adds their chains, and solves equations."""
|
|
38
|
+
|
|
39
|
+
def _get_reads(self) -> tuple[str, ...]:
|
|
40
|
+
"""Return the fields of the compilation the pass reads."""
|
|
41
|
+
return ('lowered', 'layout')
|
|
42
|
+
|
|
43
|
+
def _get_writes(self) -> tuple[str, ...]:
|
|
44
|
+
"""Return the fields of the compilation the pass writes."""
|
|
45
|
+
return ('ordered',)
|
|
46
|
+
|
|
47
|
+
def _run(self, inputs: object = None) -> None:
|
|
48
|
+
"""Lower the orders and lags of the laws and solve their equations."""
|
|
49
|
+
compilation = self.compilation_
|
|
50
|
+
blocks = list(Compilation._required(compilation.layout, 'layout').blocks.values())
|
|
51
|
+
orders = self._orders_of(blocks)
|
|
52
|
+
specs = [
|
|
53
|
+
(spec, self._with_orders(spec, laws, block, orders))
|
|
54
|
+
for spec, laws, block in Compilation._required(compilation.lowered, 'lowered')
|
|
55
|
+
]
|
|
56
|
+
static = isinstance(compilation.system.time, StaticTime)
|
|
57
|
+
compilation.ordered = self._solve_static(specs) if static else self._solve_equations(specs)
|
|
58
|
+
|
|
59
|
+
@staticmethod
|
|
60
|
+
def _orders_of(blocks: list[BlockSpec]) -> _OrdersSpec:
|
|
61
|
+
"""Return the orders above 1 and the lags of every state of the blocks."""
|
|
62
|
+
orders, lags = {}, {}
|
|
63
|
+
for block in blocks:
|
|
64
|
+
if block.node.interaction or block.node.is_agent:
|
|
65
|
+
continue
|
|
66
|
+
declarations = declarations_of(block.node.component_type, VariableKind.STATE)
|
|
67
|
+
for variable, entry in block.entries.items():
|
|
68
|
+
declaration = declarations.get(variable)
|
|
69
|
+
if declaration is not None and declaration.derivatives:
|
|
70
|
+
orders[entry.name] = declaration.derivatives + 1
|
|
71
|
+
if declaration is not None and declaration.lags:
|
|
72
|
+
lags[entry.name] = declaration.lags
|
|
73
|
+
return _OrdersSpec(orders, lags)
|
|
74
|
+
|
|
75
|
+
@staticmethod
|
|
76
|
+
def _companion_symbol(spec: KernelSpec, item: Expression, suffix: str) -> Expression:
|
|
77
|
+
"""Return the symbol of a companion state of the state a symbol reads, in the same namespace and column."""
|
|
78
|
+
reference = spec.references[item]
|
|
79
|
+
name = f'{reference.entry.name}{suffix}'
|
|
80
|
+
for other, candidate in spec.references.items():
|
|
81
|
+
if (
|
|
82
|
+
candidate.entry.name == name
|
|
83
|
+
and candidate.column == reference.column
|
|
84
|
+
and candidate.source == reference.source
|
|
85
|
+
):
|
|
86
|
+
return other
|
|
87
|
+
error_msg = f'A law of {spec.owner} reads {name}, which the namespace does not hold.'
|
|
88
|
+
raise ValidationError(error_msg)
|
|
89
|
+
|
|
90
|
+
@staticmethod
|
|
91
|
+
def _substitute(
|
|
92
|
+
value: object,
|
|
93
|
+
spec: KernelSpec,
|
|
94
|
+
orders: _OrdersSpec,
|
|
95
|
+
owner: str,
|
|
96
|
+
highest: dict[Expression, Expression] | None = None,
|
|
97
|
+
) -> object:
|
|
98
|
+
"""Return a law value with derivatives and lags of states replaced by their companion symbols.
|
|
99
|
+
|
|
100
|
+
When `highest` is given, derivatives of a state's own order become placeholders that map to the symbol of the
|
|
101
|
+
state's highest derivative, which an equation solves for.
|
|
102
|
+
"""
|
|
103
|
+
if isinstance(value, FreeModuleElement):
|
|
104
|
+
return vector(OrdersPass._substitute(item, spec, orders, owner, highest) for item in value)
|
|
105
|
+
if not isinstance(value, Expression):
|
|
106
|
+
return value
|
|
107
|
+
replacements = {}
|
|
108
|
+
for call in BasePass._calls_of(value, 'derivative'):
|
|
109
|
+
item, degree = call.operands()
|
|
110
|
+
reference = spec.references.get(item)
|
|
111
|
+
order = orders.orders.get(reference.entry.name, 1) if reference is not None else 1
|
|
112
|
+
if highest is not None and reference is not None and degree.is_integer() and int(degree) == order:
|
|
113
|
+
top = item if order == 1 else OrdersPass._companion_symbol(spec, item, f'_d{order - 1}')
|
|
114
|
+
placeholder = symbol(f'_highest_{top}')
|
|
115
|
+
highest[placeholder] = top
|
|
116
|
+
replacements[call] = placeholder
|
|
117
|
+
continue
|
|
118
|
+
if reference is None or not degree.is_integer() or not 0 < int(degree) < order:
|
|
119
|
+
error_msg = (
|
|
120
|
+
f'{owner} uses {call}, but laws read derivatives of a state only below its declared order, here '
|
|
121
|
+
f'{order}. Declare a higher order with `state(order=...)`, or state the highest derivative with an '
|
|
122
|
+
'`EquationLaw`.'
|
|
123
|
+
)
|
|
124
|
+
raise ValidationError(error_msg)
|
|
125
|
+
replacements[call] = OrdersPass._companion_symbol(spec, item, f'_d{int(degree)}')
|
|
126
|
+
for call in BasePass._calls_of(value, 'lag'):
|
|
127
|
+
item, steps = call.operands()
|
|
128
|
+
reference = spec.references.get(item)
|
|
129
|
+
kept = orders.lags.get(reference.entry.name, 0) if reference is not None else 0
|
|
130
|
+
if reference is None or not steps.is_integer() or not 0 < int(steps) <= kept:
|
|
131
|
+
error_msg = (
|
|
132
|
+
f'{owner} uses {call}, but the state keeps {kept} past values. Declare more with `state(lags=...)`.'
|
|
133
|
+
)
|
|
134
|
+
raise ValidationError(error_msg)
|
|
135
|
+
replacements[call] = OrdersPass._companion_symbol(spec, item, f'_lag{int(steps)}')
|
|
136
|
+
return value.subs(replacements) if replacements else value
|
|
137
|
+
|
|
138
|
+
@staticmethod
|
|
139
|
+
def _retarget(law: RateLaw | NoiseLaw, spec: KernelSpec, orders: _OrdersSpec) -> RateLaw | NoiseLaw:
|
|
140
|
+
"""Return a rate or noise law that targets the highest derivative of its state, after checking its order."""
|
|
141
|
+
items = components_of(law._get_targets()[0])
|
|
142
|
+
references = [spec.references.get(item) for item in items]
|
|
143
|
+
declared = {orders.orders.get(reference.entry.name, 1) for reference in references if reference is not None}
|
|
144
|
+
order = max(declared, default=1)
|
|
145
|
+
if law.order is not None and law.order != order:
|
|
146
|
+
names = ', '.join(sorted({reference.entry.name for reference in references if reference is not None}))
|
|
147
|
+
error_msg = (
|
|
148
|
+
f'A {type(law).__name__} of {spec.owner} on {names} gives the derivative of order {law.order}, but the '
|
|
149
|
+
f'state has order {order}. Match the law to the order declared with `state(order=...)`.'
|
|
150
|
+
)
|
|
151
|
+
raise ValidationError(error_msg)
|
|
152
|
+
if order == 1:
|
|
153
|
+
return law
|
|
154
|
+
tops = [OrdersPass._companion_symbol(spec, item, f'_d{order - 1}') for item in items]
|
|
155
|
+
target = vector(tops) if isinstance(law._get_targets()[0], FreeModuleElement) else tops[0]
|
|
156
|
+
return BasePass._replaced(law, target=target)
|
|
157
|
+
|
|
158
|
+
@staticmethod
|
|
159
|
+
def _intrinsic_laws(spec: KernelSpec, block: BlockSpec, orders: _OrdersSpec) -> list[BaseLaw]:
|
|
160
|
+
"""Return the chain `x' = x_d1, ...` of every higher-order state and the shifts of every lagged state."""
|
|
161
|
+
laws: list[BaseLaw] = []
|
|
162
|
+
for variable, entry in block.entries.items():
|
|
163
|
+
names = [variable, *(f'{variable}_d{index}' for index in range(1, orders.orders.get(entry.name, 1)))]
|
|
164
|
+
laws += [
|
|
165
|
+
RateLaw(getattr(spec.namespace, lower), getattr(spec.namespace, upper))
|
|
166
|
+
for lower, upper in itertools.pairwise(names)
|
|
167
|
+
]
|
|
168
|
+
shifted = [variable, *(f'{variable}_lag{index}' for index in range(1, orders.lags.get(entry.name, 0) + 1))]
|
|
169
|
+
laws += [
|
|
170
|
+
UpdateLaw(getattr(spec.namespace, older), getattr(spec.namespace, newer))
|
|
171
|
+
for newer, older in itertools.pairwise(shifted)
|
|
172
|
+
]
|
|
173
|
+
return laws
|
|
174
|
+
|
|
175
|
+
@staticmethod
|
|
176
|
+
def _relation(spec: KernelSpec, law: EquationLaw, orders: _OrdersSpec) -> _RelationSpec:
|
|
177
|
+
"""Return an equation law as a relation in placeholders of the highest derivatives it contains."""
|
|
178
|
+
description = f'the equation {law.lhs_} == {law.rhs_} of {spec.owner}'
|
|
179
|
+
if spec.pairs is not None:
|
|
180
|
+
error_msg = f'Pair interaction {spec.owner} returns {description}. Pair interactions take only rate laws.'
|
|
181
|
+
raise ValidationError(error_msg)
|
|
182
|
+
highest: dict[Expression, Expression] = {}
|
|
183
|
+
lhs = OrdersPass._substitute(SR(law.lhs_), spec, orders, f'In {description}, it', highest)
|
|
184
|
+
rhs = OrdersPass._substitute(SR(law.rhs_), spec, orders, f'In {description}, it', highest)
|
|
185
|
+
reference = spec.references.get(law.target) if isinstance(law.target, Expression) else None
|
|
186
|
+
key = None if reference is None else (reference.entry.name, reference.column)
|
|
187
|
+
target = None if key is None else law.target
|
|
188
|
+
return _RelationSpec(spec, SR(lhs) - SR(rhs), highest, description, key, target)
|
|
189
|
+
|
|
190
|
+
@staticmethod
|
|
191
|
+
def _check_relation(relation: _RelationSpec) -> None:
|
|
192
|
+
"""Raise an error for a relation with no highest derivative of a state to solve for."""
|
|
193
|
+
if not relation.highest:
|
|
194
|
+
description = relation.description
|
|
195
|
+
error_msg = (
|
|
196
|
+
f'{description[0].upper()}{description[1:]} contains no highest derivative of a state to solve for.'
|
|
197
|
+
)
|
|
198
|
+
raise ValidationError(error_msg)
|
|
199
|
+
|
|
200
|
+
@staticmethod
|
|
201
|
+
def _summed(relations: list[_RelationSpec]) -> list[_RelationSpec]:
|
|
202
|
+
"""Return the relations with those of one target added into one."""
|
|
203
|
+
groups: dict[tuple[str, int] | int, list[_RelationSpec]] = {}
|
|
204
|
+
for index, relation in enumerate(relations):
|
|
205
|
+
groups.setdefault(index if relation.key is None else relation.key, []).append(relation)
|
|
206
|
+
summed = []
|
|
207
|
+
for group in groups.values():
|
|
208
|
+
first = group[0]
|
|
209
|
+
if len(group) > 1:
|
|
210
|
+
references = {key: value for item in group for key, value in item.spec.references.items()}
|
|
211
|
+
owner = ', '.join(dict.fromkeys(item.spec.owner for item in group))
|
|
212
|
+
spec = KernelSpec(owner, SimpleNamespace(), references, max(item.spec.rows for item in group))
|
|
213
|
+
first = _RelationSpec(
|
|
214
|
+
spec,
|
|
215
|
+
sum((item.expression for item in group), SR(0)),
|
|
216
|
+
{key: value for item in group for key, value in item.highest.items()},
|
|
217
|
+
' + '.join(item.description for item in group),
|
|
218
|
+
first.key,
|
|
219
|
+
first.target,
|
|
220
|
+
)
|
|
221
|
+
summed.append(first)
|
|
222
|
+
return summed
|
|
223
|
+
|
|
224
|
+
@staticmethod
|
|
225
|
+
def _ordered_law(spec: KernelSpec, law: BaseLaw, orders: _OrdersSpec) -> BaseLaw:
|
|
226
|
+
"""Return a jump, event, renewal, or assignment law with derivatives and lags replaced and rates retargeted."""
|
|
227
|
+
owner = f'A {type(law).__name__} of {spec.owner}'
|
|
228
|
+
if isinstance(law, JumpLaw):
|
|
229
|
+
return JumpLaw(OrdersPass._substitute(law.rate, spec, orders, owner), law.changes)
|
|
230
|
+
if isinstance(law, CrossingLaw | RenewalLaw):
|
|
231
|
+
reset = {
|
|
232
|
+
OrdersPass._substitute(SR(target), spec, orders, owner): (
|
|
233
|
+
value if BaseLaw._is_function(value) else OrdersPass._substitute(SR(value), spec, orders, owner)
|
|
234
|
+
)
|
|
235
|
+
for target, value in (law.reset or {}).items()
|
|
236
|
+
}
|
|
237
|
+
reset_value = reset if law.reset is not None else None
|
|
238
|
+
if isinstance(law, RenewalLaw):
|
|
239
|
+
return BasePass._replaced(
|
|
240
|
+
law,
|
|
241
|
+
waiting=(
|
|
242
|
+
law.waiting
|
|
243
|
+
if BaseLaw._is_function(law.waiting)
|
|
244
|
+
else OrdersPass._substitute(SR(law.waiting), spec, orders, owner)
|
|
245
|
+
),
|
|
246
|
+
reset=reset_value,
|
|
247
|
+
)
|
|
248
|
+
return BasePass._replaced(
|
|
249
|
+
law,
|
|
250
|
+
guard=(
|
|
251
|
+
law.guard
|
|
252
|
+
if BaseLaw._is_function(law.guard)
|
|
253
|
+
else OrdersPass._substitute(SR(law.guard), spec, orders, owner)
|
|
254
|
+
),
|
|
255
|
+
reset=reset_value,
|
|
256
|
+
)
|
|
257
|
+
if not isinstance(law, RateLaw | NoiseLaw | UpdateLaw | BoundaryLaw):
|
|
258
|
+
return law
|
|
259
|
+
value = OrdersPass._substitute(law.value, spec, orders, owner)
|
|
260
|
+
if isinstance(law, RateLaw | NoiseLaw):
|
|
261
|
+
return OrdersPass._retarget(BasePass._replaced(law, value=value), spec, orders)
|
|
262
|
+
return BasePass._replaced(law, value=value)
|
|
263
|
+
|
|
264
|
+
@staticmethod
|
|
265
|
+
def _with_orders(
|
|
266
|
+
spec: KernelSpec,
|
|
267
|
+
laws: list[BaseLaw],
|
|
268
|
+
block: BlockSpec,
|
|
269
|
+
orders: _OrdersSpec,
|
|
270
|
+
) -> list[BaseLaw | _RelationSpec]:
|
|
271
|
+
"""Return laws with derivatives and lags replaced, rates retargeted, equations as relations, chains added."""
|
|
272
|
+
if not orders.orders and not orders.lags and not any(isinstance(law, EquationLaw) for law in laws):
|
|
273
|
+
return list(laws)
|
|
274
|
+
result: list[BaseLaw | _RelationSpec] = []
|
|
275
|
+
for law in laws:
|
|
276
|
+
if isinstance(law, _KERNEL_FREE_LAWS):
|
|
277
|
+
result.append(law)
|
|
278
|
+
elif isinstance(law, EquationLaw):
|
|
279
|
+
result.append(OrdersPass._relation(spec, law, orders))
|
|
280
|
+
else:
|
|
281
|
+
result.append(OrdersPass._ordered_law(spec, law, orders))
|
|
282
|
+
if not block.node.interaction:
|
|
283
|
+
result += [
|
|
284
|
+
item
|
|
285
|
+
for law in OrdersPass._intrinsic_laws(spec, block, orders)
|
|
286
|
+
for item in LowerComplexPass._split_law(
|
|
287
|
+
law,
|
|
288
|
+
spec.owner,
|
|
289
|
+
spec._state_name,
|
|
290
|
+
)
|
|
291
|
+
]
|
|
292
|
+
return result
|
|
293
|
+
|
|
294
|
+
@staticmethod
|
|
295
|
+
def _numeric_solution(rows: int, size: int, index: int) -> Callable[..., Array]:
|
|
296
|
+
"""Return a function of the matrix and right side entries that solves the linear system for one unknown."""
|
|
297
|
+
|
|
298
|
+
def solve(t: float, *entries: npt.ArrayLike) -> Array:
|
|
299
|
+
del t
|
|
300
|
+
values = [np.broadcast_to(np.asarray(entry, dtype=float), (rows,)) for entry in entries]
|
|
301
|
+
matrix_ = np.stack(values[: size * size], axis=-1).reshape(rows, size, size)
|
|
302
|
+
right = np.stack(values[size * size :], axis=-1)
|
|
303
|
+
return np.linalg.solve(matrix_, right[..., None])[..., 0][:, index]
|
|
304
|
+
|
|
305
|
+
return solve
|
|
306
|
+
|
|
307
|
+
@staticmethod
|
|
308
|
+
def _checked_relations(specs: list[tuple[KernelSpec, list[BaseLaw | _RelationSpec]]]) -> list[_RelationSpec]:
|
|
309
|
+
"""Return the relations of specs with those of one target added, each checked for a highest derivative."""
|
|
310
|
+
relations = OrdersPass._summed([item for _, laws in specs for item in laws if isinstance(item, _RelationSpec)])
|
|
311
|
+
for relation in relations:
|
|
312
|
+
OrdersPass._check_relation(relation)
|
|
313
|
+
return relations
|
|
314
|
+
|
|
315
|
+
@staticmethod
|
|
316
|
+
def _solve_equations(
|
|
317
|
+
specs: list[tuple[KernelSpec, list[BaseLaw | _RelationSpec]]],
|
|
318
|
+
) -> list[tuple[KernelSpec, list[BaseLaw]]]:
|
|
319
|
+
"""Return specs whose equations are replaced by rate laws on the highest derivatives they solve for jointly."""
|
|
320
|
+
relations = OrdersPass._checked_relations(specs)
|
|
321
|
+
kept = [(spec, [law for law in laws if not isinstance(law, _RelationSpec)]) for spec, laws in specs]
|
|
322
|
+
if not relations:
|
|
323
|
+
return kept
|
|
324
|
+
highest: dict[Expression, Expression] = {}
|
|
325
|
+
for relation in relations:
|
|
326
|
+
highest.update(relation.highest)
|
|
327
|
+
unknowns = list(highest)
|
|
328
|
+
for relation in relations:
|
|
329
|
+
for first in unknowns:
|
|
330
|
+
for second in unknowns:
|
|
331
|
+
if not relation.expression.diff(first).diff(second).is_trivial_zero():
|
|
332
|
+
error_msg = (
|
|
333
|
+
f'{relation.description[0].upper()}{relation.description[1:]} is not linear in the highest '
|
|
334
|
+
f'derivative {highest[first]}. Write the equation so that highest derivatives appear '
|
|
335
|
+
'linearly.'
|
|
336
|
+
)
|
|
337
|
+
raise ValidationError(error_msg)
|
|
338
|
+
descriptions = '; '.join(relation.description for relation in relations)
|
|
339
|
+
if len(relations) != len(unknowns):
|
|
340
|
+
error_msg = (
|
|
341
|
+
f'{len(relations)} equations give {len(unknowns)} highest derivatives, '
|
|
342
|
+
f'{", ".join(str(highest[item]) for item in unknowns)}, in {descriptions}. Give one equation per '
|
|
343
|
+
'derivative.'
|
|
344
|
+
)
|
|
345
|
+
raise ValidationError(error_msg)
|
|
346
|
+
zero = dict.fromkeys(unknowns, 0)
|
|
347
|
+
coefficients = [[relation.expression.diff(item) for item in unknowns] for relation in relations]
|
|
348
|
+
right = [-relation.expression.subs(zero) for relation in relations]
|
|
349
|
+
references = {key: value for relation in relations for key, value in relation.spec.references.items()}
|
|
350
|
+
rows = max(relation.spec.rows for relation in relations)
|
|
351
|
+
owner = ', '.join(dict.fromkeys(relation.spec.owner for relation in relations))
|
|
352
|
+
merged = KernelSpec(owner, SimpleNamespace(), references, rows)
|
|
353
|
+
laws: list[BaseLaw]
|
|
354
|
+
if len(unknowns) <= _EQUATION_UNKNOWNS:
|
|
355
|
+
system = matrix(SR, coefficients)
|
|
356
|
+
if system.det().simplify_full().is_trivial_zero():
|
|
357
|
+
error_msg = f'The highest derivatives of {descriptions} cannot be solved for: the system is singular.'
|
|
358
|
+
raise ValidationError(error_msg)
|
|
359
|
+
solution = system.solve_right(vector([SR(item) for item in right]), check=False)
|
|
360
|
+
laws = [RateLaw(highest[item], value) for item, value in zip(unknowns, solution, strict=True)]
|
|
361
|
+
else:
|
|
362
|
+
entries = [entry for row in coefficients for entry in row] + right
|
|
363
|
+
laws = [
|
|
364
|
+
RateLaw(
|
|
365
|
+
highest[item],
|
|
366
|
+
CallSpec(OrdersPass._numeric_solution(rows, len(unknowns), index), tuple(entries)),
|
|
367
|
+
)
|
|
368
|
+
for index, item in enumerate(unknowns)
|
|
369
|
+
]
|
|
370
|
+
return [*kept, (merged, laws)]
|
|
371
|
+
|
|
372
|
+
@staticmethod
|
|
373
|
+
def _exact_solution(relations: list[_RelationSpec]) -> list[Expression] | None:
|
|
374
|
+
"""Return the unique explicit solution of static equations for their targets, or `None` when Sage finds none."""
|
|
375
|
+
unknowns = [item.target for item in relations]
|
|
376
|
+
reduced = {
|
|
377
|
+
name for item in relations for call in reductions_in(item.expression) for name in call.call.variables()
|
|
378
|
+
}
|
|
379
|
+
if len(relations) > _EQUATION_UNKNOWNS or reduced & set(unknowns):
|
|
380
|
+
return None
|
|
381
|
+
known = {name for item in relations for name in item.expression.variables()}
|
|
382
|
+
try:
|
|
383
|
+
solutions = solve([item.expression == 0 for item in relations], unknowns, solution_dict=True)
|
|
384
|
+
except TypeError:
|
|
385
|
+
return None
|
|
386
|
+
if len(solutions) != 1 or any(item not in solutions[0] for item in unknowns):
|
|
387
|
+
return None
|
|
388
|
+
values = [SR(solutions[0][item]) for item in unknowns]
|
|
389
|
+
explicit = all(set(value.variables()) <= known - set(unknowns) for value in values)
|
|
390
|
+
return values if explicit else None
|
|
391
|
+
|
|
392
|
+
@staticmethod
|
|
393
|
+
def _solve_static(
|
|
394
|
+
specs: list[tuple[KernelSpec, list[BaseLaw | _RelationSpec]]],
|
|
395
|
+
) -> list[tuple[KernelSpec, list[BaseLaw]]]:
|
|
396
|
+
"""Return specs whose equations are replaced by updates of an exact solution, or else rates of their residuals.
|
|
397
|
+
|
|
398
|
+
An equation without a state as its target is left out, since the compiler reports it.
|
|
399
|
+
"""
|
|
400
|
+
declared = [item for _, laws in specs for item in laws if isinstance(item, _RelationSpec)]
|
|
401
|
+
relations = OrdersPass._summed([item for item in declared if item.key is not None])
|
|
402
|
+
kept = [(spec, [law for law in laws if not isinstance(law, _RelationSpec)]) for spec, laws in specs]
|
|
403
|
+
if not relations:
|
|
404
|
+
return kept
|
|
405
|
+
values = OrdersPass._exact_solution(relations)
|
|
406
|
+
if values is None:
|
|
407
|
+
return [*kept, *((item.spec, [RateLaw(item.target, item.expression)]) for item in relations)]
|
|
408
|
+
pairs = zip(relations, values, strict=True)
|
|
409
|
+
return [*kept, *((item.spec, [UpdateLaw(item.target, value)]) for item, value in pairs)]
|
|
@@ -0,0 +1,90 @@
|
|
|
1
|
+
"""Keep the laws of the owners a compilation compiles, masked to the rows present of capacity groups."""
|
|
2
|
+
|
|
3
|
+
# Author: Georgios Douzas <gdouzas@icloud.com>
|
|
4
|
+
# License: MIT
|
|
5
|
+
|
|
6
|
+
from collections import defaultdict
|
|
7
|
+
|
|
8
|
+
from sage.all__sagemath_symbolics import SR, Expression
|
|
9
|
+
from sage.modules.free_module_element import FreeModuleElement
|
|
10
|
+
|
|
11
|
+
from ....core.laws import BaseLaw, JumpLaw, NoiseLaw, RateLaw, UpdateLaw
|
|
12
|
+
from ..._utils import vector
|
|
13
|
+
from ...problems import DeclarationsSpec, KernelSpec
|
|
14
|
+
from .._base import BasePass
|
|
15
|
+
from .._compilation import Compilation, Laws
|
|
16
|
+
from ._census import CensusPass
|
|
17
|
+
from ._kernels import KernelsPass
|
|
18
|
+
from ._mask_requests import MaskRequestsPass
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
class OwnersPass(BasePass):
|
|
22
|
+
"""Pass that keeps the laws of the compiled owners, masks them to the rows present, and finds their kinds."""
|
|
23
|
+
|
|
24
|
+
def _get_reads(self) -> tuple[str, ...]:
|
|
25
|
+
"""Return the fields of the compilation the pass reads."""
|
|
26
|
+
return ('shifted', 'apart', 'nodes', 'layout')
|
|
27
|
+
|
|
28
|
+
def _get_writes(self) -> tuple[str, ...]:
|
|
29
|
+
"""Return the fields of the compilation the pass writes."""
|
|
30
|
+
return ('drawn', 'kinds', 'drawn_apart')
|
|
31
|
+
|
|
32
|
+
def _run(self, inputs: object = None) -> None:
|
|
33
|
+
"""Keep the laws of the owners of the compilation and find their kinds."""
|
|
34
|
+
compilation = self.compilation_
|
|
35
|
+
declarations = Compilation._required(compilation.layout, 'layout')
|
|
36
|
+
agents = {node.path for node in Compilation._required(compilation.nodes, 'nodes') if node.is_agent}
|
|
37
|
+
owned = self._owned(Compilation._required(compilation.shifted, 'shifted'), compilation.owners, agents)
|
|
38
|
+
compilation.drawn = [(spec, self._masked(spec, laws, declarations)) for spec, laws in owned]
|
|
39
|
+
apart = Compilation._required(compilation.apart, 'apart')
|
|
40
|
+
compilation.drawn_apart = self._owned(apart, compilation.owners, agents)
|
|
41
|
+
compilation.kinds = self._law_kinds([*compilation.drawn, *compilation.drawn_apart], agents)
|
|
42
|
+
|
|
43
|
+
@staticmethod
|
|
44
|
+
def _kept_update(law: UpdateLaw, mask: Expression) -> UpdateLaw:
|
|
45
|
+
"""Return an update law that keeps the value of its target on the free rows of a capacity layout."""
|
|
46
|
+
value, kept = (
|
|
47
|
+
MaskRequestsPass._masked_value(law.value, mask),
|
|
48
|
+
MaskRequestsPass._masked_value(law._get_targets()[0], 1 - mask),
|
|
49
|
+
)
|
|
50
|
+
if isinstance(value, FreeModuleElement) and isinstance(kept, FreeModuleElement):
|
|
51
|
+
return BasePass._replaced(law, value=vector(a + b for a, b in zip(value, kept, strict=True)))
|
|
52
|
+
return BasePass._replaced(law, value=SR(value) + SR(kept))
|
|
53
|
+
|
|
54
|
+
@staticmethod
|
|
55
|
+
def _masked(spec: KernelSpec, laws: list[BaseLaw], declarations: DeclarationsSpec) -> list[BaseLaw]:
|
|
56
|
+
"""Return laws that leave the free rows of a capacity layout unchanged and fire no event for them."""
|
|
57
|
+
mask = MaskRequestsPass._mask_of(spec, declarations)
|
|
58
|
+
if mask is None:
|
|
59
|
+
return laws
|
|
60
|
+
masked: list[BaseLaw] = []
|
|
61
|
+
for law in laws:
|
|
62
|
+
if isinstance(law, RateLaw | NoiseLaw):
|
|
63
|
+
masked.append(BasePass._replaced(law, value=MaskRequestsPass._masked_value(law.value, mask)))
|
|
64
|
+
elif isinstance(law, JumpLaw) and law.rate is not None:
|
|
65
|
+
masked.append(BasePass._replaced(law, rate=MaskRequestsPass._masked_value(law.rate, mask)))
|
|
66
|
+
elif isinstance(law, UpdateLaw) and isinstance(law.value, Expression | FreeModuleElement | int | float):
|
|
67
|
+
masked.append(OwnersPass._kept_update(law, mask))
|
|
68
|
+
else:
|
|
69
|
+
masked.append(law)
|
|
70
|
+
return masked
|
|
71
|
+
|
|
72
|
+
@staticmethod
|
|
73
|
+
def _owned(specs: Laws, owners: frozenset[str] | None, agents: set[str]) -> Laws:
|
|
74
|
+
"""Return the laws of the components in `owners`, or every law."""
|
|
75
|
+
return [
|
|
76
|
+
(
|
|
77
|
+
spec,
|
|
78
|
+
laws if owners is None else [law for law in laws if CensusPass._law_owner(spec, law, agents) in owners],
|
|
79
|
+
)
|
|
80
|
+
for spec, laws in specs
|
|
81
|
+
]
|
|
82
|
+
|
|
83
|
+
@staticmethod
|
|
84
|
+
def _law_kinds(specs: list[tuple[KernelSpec, list[BaseLaw]]], agents: set[str]) -> dict[str, set[type]]:
|
|
85
|
+
"""Return the kinds of the laws of every component."""
|
|
86
|
+
kinds: dict[str, set[type]] = defaultdict(set)
|
|
87
|
+
for spec, laws in specs:
|
|
88
|
+
for law in laws:
|
|
89
|
+
kinds[CensusPass._law_owner(spec, law, agents)].add(KernelsPass._kind_of(law))
|
|
90
|
+
return kinds
|
|
@@ -0,0 +1,69 @@
|
|
|
1
|
+
"""Compile particles: pair interactions within a cutoff and the boundaries of the continuous space they move in."""
|
|
2
|
+
|
|
3
|
+
# Author: Georgios Douzas <gdouzas@icloud.com>
|
|
4
|
+
# License: MIT
|
|
5
|
+
|
|
6
|
+
|
|
7
|
+
from sage.all__sagemath_symbolics import SR
|
|
8
|
+
|
|
9
|
+
from ....core.laws import BaseLaw, BoundaryLaw
|
|
10
|
+
from ....core.laws.utils import either, mod, where
|
|
11
|
+
from ....core.spaces import ContinuousSpace
|
|
12
|
+
from ....types import VariableKind
|
|
13
|
+
from ..._utils import components_of, declarations_of
|
|
14
|
+
from ...problems import BlockSpec, KernelSpec
|
|
15
|
+
from .._base import BasePass
|
|
16
|
+
from .._compilation import Compilation
|
|
17
|
+
|
|
18
|
+
|
|
19
|
+
class BoundaryLawsPass(BasePass):
|
|
20
|
+
"""Pass that adds the laws by which the boundary of a continuous space acts on the positions of components."""
|
|
21
|
+
|
|
22
|
+
def _get_reads(self) -> tuple[str, ...]:
|
|
23
|
+
"""Return the fields of the compilation the pass reads."""
|
|
24
|
+
return ('collected',)
|
|
25
|
+
|
|
26
|
+
def _get_writes(self) -> tuple[str, ...]:
|
|
27
|
+
"""Return the fields of the compilation the pass writes."""
|
|
28
|
+
return ('collected',)
|
|
29
|
+
|
|
30
|
+
def _run(self, inputs: object = None) -> None:
|
|
31
|
+
"""Add the boundary laws of continuous spaces."""
|
|
32
|
+
compilation = self.compilation_
|
|
33
|
+
compilation.collected = [
|
|
34
|
+
(spec, [*laws, *self._space_boundary_laws(block, spec)], block)
|
|
35
|
+
for spec, laws, block in Compilation._required(compilation.collected, 'collected')
|
|
36
|
+
]
|
|
37
|
+
|
|
38
|
+
@staticmethod
|
|
39
|
+
def _space_boundary_laws(block: BlockSpec, spec: KernelSpec) -> list[BaseLaw]:
|
|
40
|
+
"""Return the laws by which the boundary of a continuous space acts on the position states of a component.
|
|
41
|
+
|
|
42
|
+
A periodic boundary wraps every position component into the box. A reflecting boundary mirrors a position that
|
|
43
|
+
crossed a wall back into the box and reverses the velocity component across the wall, where the velocity is the
|
|
44
|
+
first derivative of a position of order 2.
|
|
45
|
+
"""
|
|
46
|
+
space = block.node.space
|
|
47
|
+
if block.node.interaction or not isinstance(space, ContinuousSpace) or space.boundary == 'open':
|
|
48
|
+
return []
|
|
49
|
+
declarations = declarations_of(block.node.component_type, VariableKind.STATE)
|
|
50
|
+
laws: list[BaseLaw] = []
|
|
51
|
+
for name, declaration in declarations.items():
|
|
52
|
+
if not declaration.is_place:
|
|
53
|
+
continue
|
|
54
|
+
velocity_name = f'{name}_d1' if declaration.order > 1 else None
|
|
55
|
+
positions = [SR(item) for item in components_of(getattr(spec.namespace, name))]
|
|
56
|
+
velocities = (
|
|
57
|
+
[SR(item) for item in components_of(getattr(spec.namespace, velocity_name))]
|
|
58
|
+
if velocity_name
|
|
59
|
+
else [None] * len(positions)
|
|
60
|
+
)
|
|
61
|
+
for position, velocity, side in zip(positions, velocities, space.extent_, strict=True):
|
|
62
|
+
if space.boundary == 'periodic':
|
|
63
|
+
laws.append(BoundaryLaw(position, mod(position, side)))
|
|
64
|
+
continue
|
|
65
|
+
below, above = position < 0, position > side
|
|
66
|
+
laws.append(BoundaryLaw(position, where(below, -position, where(above, 2 * side - position, position))))
|
|
67
|
+
if velocity is not None:
|
|
68
|
+
laws.append(BoundaryLaw(velocity, where(either(below, above), -velocity, velocity)))
|
|
69
|
+
return laws
|