scikit-complexity 0.2.0__py3-none-any.whl

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  1. scikit_complexity-0.2.0.dist-info/METADATA +317 -0
  2. scikit_complexity-0.2.0.dist-info/RECORD +1748 -0
  3. scikit_complexity-0.2.0.dist-info/WHEEL +4 -0
  4. scikit_complexity-0.2.0.dist-info/entry_points.txt +4 -0
  5. scikit_complexity-0.2.0.dist-info/licenses/LICENSE +21 -0
  6. skcomplex/__init__.py +1 -0
  7. skcomplex/analysis/__init__.py +101 -0
  8. skcomplex/analysis/_alignment.py +263 -0
  9. skcomplex/analysis/_automata.py +658 -0
  10. skcomplex/analysis/_base.py +841 -0
  11. skcomplex/analysis/_clusters.py +298 -0
  12. skcomplex/analysis/_coarse_grain.py +183 -0
  13. skcomplex/analysis/_collapse.py +318 -0
  14. skcomplex/analysis/_complexity.py +129 -0
  15. skcomplex/analysis/_computational_mechanics.py +220 -0
  16. skcomplex/analysis/_correlation.py +364 -0
  17. skcomplex/analysis/_defects.py +111 -0
  18. skcomplex/analysis/_discovery.py +101 -0
  19. skcomplex/analysis/_displacement.py +135 -0
  20. skcomplex/analysis/_distribution.py +327 -0
  21. skcomplex/analysis/_domains.py +220 -0
  22. skcomplex/analysis/_embedding.py +235 -0
  23. skcomplex/analysis/_emergence.py +503 -0
  24. skcomplex/analysis/_entropy.py +425 -0
  25. skcomplex/analysis/_ergodicity.py +228 -0
  26. skcomplex/analysis/_events.py +301 -0
  27. skcomplex/analysis/_fit.py +368 -0
  28. skcomplex/analysis/_groups.py +205 -0
  29. skcomplex/analysis/_information.py +488 -0
  30. skcomplex/analysis/_invariants.py +409 -0
  31. skcomplex/analysis/_irreversibility.py +421 -0
  32. skcomplex/analysis/_kramers_moyal.py +104 -0
  33. skcomplex/analysis/_large_deviations.py +378 -0
  34. skcomplex/analysis/_linearization.py +231 -0
  35. skcomplex/analysis/_local_information.py +166 -0
  36. skcomplex/analysis/_loops.py +394 -0
  37. skcomplex/analysis/_lyapunov.py +342 -0
  38. skcomplex/analysis/_markov.py +303 -0
  39. skcomplex/analysis/_mode_decomposition.py +209 -0
  40. skcomplex/analysis/_motifs.py +239 -0
  41. skcomplex/analysis/_neighbors.py +303 -0
  42. skcomplex/analysis/_networks.py +286 -0
  43. skcomplex/analysis/_operator.py +312 -0
  44. skcomplex/analysis/_partial_information.py +118 -0
  45. skcomplex/analysis/_passage.py +244 -0
  46. skcomplex/analysis/_recurrence.py +202 -0
  47. skcomplex/analysis/_reservoirs.py +387 -0
  48. skcomplex/analysis/_rolling.py +168 -0
  49. skcomplex/analysis/_scaling.py +370 -0
  50. skcomplex/analysis/_sections.py +225 -0
  51. skcomplex/analysis/_signatures.py +250 -0
  52. skcomplex/analysis/_sparse_identification.py +398 -0
  53. skcomplex/analysis/_spectrum.py +164 -0
  54. skcomplex/analysis/_stability.py +547 -0
  55. skcomplex/analysis/_surrogates.py +127 -0
  56. skcomplex/analysis/_symbolic.py +639 -0
  57. skcomplex/analysis/types.py +43 -0
  58. skcomplex/base.py +159 -0
  59. skcomplex/core/__init__.py +1 -0
  60. skcomplex/core/base.py +150 -0
  61. skcomplex/core/elements/__init__.py +21 -0
  62. skcomplex/core/elements/_base.py +84 -0
  63. skcomplex/core/elements/_compartment.py +52 -0
  64. skcomplex/core/elements/_density.py +52 -0
  65. skcomplex/core/elements/_element.py +80 -0
  66. skcomplex/core/elements/_field.py +192 -0
  67. skcomplex/core/elements/_group.py +241 -0
  68. skcomplex/core/elements/_lattice.py +115 -0
  69. skcomplex/core/elements/_point.py +66 -0
  70. skcomplex/core/interactions/__init__.py +89 -0
  71. skcomplex/core/interactions/_advection.py +134 -0
  72. skcomplex/core/interactions/_base.py +361 -0
  73. skcomplex/core/interactions/_cascade.py +195 -0
  74. skcomplex/core/interactions/_choice.py +320 -0
  75. skcomplex/core/interactions/_conservation.py +164 -0
  76. skcomplex/core/interactions/_coupling.py +741 -0
  77. skcomplex/core/interactions/_crossing.py +136 -0
  78. skcomplex/core/interactions/_diffusion.py +99 -0
  79. skcomplex/core/interactions/_encounter.py +201 -0
  80. skcomplex/core/interactions/_euler_lagrange.py +183 -0
  81. skcomplex/core/interactions/_evolution.py +520 -0
  82. skcomplex/core/interactions/_feedback.py +79 -0
  83. skcomplex/core/interactions/_gradient.py +293 -0
  84. skcomplex/core/interactions/_grouping.py +399 -0
  85. skcomplex/core/interactions/_hamiltonian.py +191 -0
  86. skcomplex/core/interactions/_hyperedge.py +96 -0
  87. skcomplex/core/interactions/_imitation.py +357 -0
  88. skcomplex/core/interactions/_impulse.py +133 -0
  89. skcomplex/core/interactions/_interaction.py +58 -0
  90. skcomplex/core/interactions/_jump.py +201 -0
  91. skcomplex/core/interactions/_life_cycle.py +424 -0
  92. skcomplex/core/interactions/_local_rule.py +134 -0
  93. skcomplex/core/interactions/_map.py +239 -0
  94. skcomplex/core/interactions/_matching.py +701 -0
  95. skcomplex/core/interactions/_movement.py +377 -0
  96. skcomplex/core/interactions/_neighbor.py +88 -0
  97. skcomplex/core/interactions/_optimization.py +206 -0
  98. skcomplex/core/interactions/_pair.py +82 -0
  99. skcomplex/core/interactions/_pair_coupling.py +169 -0
  100. skcomplex/core/interactions/_rate.py +240 -0
  101. skcomplex/core/interactions/_reaction.py +466 -0
  102. skcomplex/core/interactions/_reinforcement.py +226 -0
  103. skcomplex/core/interactions/_relaxation.py +103 -0
  104. skcomplex/core/interactions/_sampling.py +177 -0
  105. skcomplex/core/interactions/_satisfiability.py +145 -0
  106. skcomplex/core/interactions/_sign_adjustment.py +222 -0
  107. skcomplex/core/interactions/_topology.py +215 -0
  108. skcomplex/core/interactions/_training.py +184 -0
  109. skcomplex/core/interactions/_transfer.py +669 -0
  110. skcomplex/core/interactions/_transition.py +427 -0
  111. skcomplex/core/laws/__init__.py +60 -0
  112. skcomplex/core/laws/_base.py +194 -0
  113. skcomplex/core/laws/_bilinear.py +91 -0
  114. skcomplex/core/laws/_boundary.py +59 -0
  115. skcomplex/core/laws/_cascade.py +79 -0
  116. skcomplex/core/laws/_crossing.py +87 -0
  117. skcomplex/core/laws/_dissipator.py +79 -0
  118. skcomplex/core/laws/_drive.py +56 -0
  119. skcomplex/core/laws/_emission.py +81 -0
  120. skcomplex/core/laws/_encounter.py +96 -0
  121. skcomplex/core/laws/_equation.py +105 -0
  122. skcomplex/core/laws/_extremal.py +94 -0
  123. skcomplex/core/laws/_flux.py +108 -0
  124. skcomplex/core/laws/_fractional_noise.py +65 -0
  125. skcomplex/core/laws/_generator.py +66 -0
  126. skcomplex/core/laws/_gradient_step.py +89 -0
  127. skcomplex/core/laws/_jump.py +137 -0
  128. skcomplex/core/laws/_local_rule.py +92 -0
  129. skcomplex/core/laws/_match.py +321 -0
  130. skcomplex/core/laws/_noise.py +125 -0
  131. skcomplex/core/laws/_rate.py +82 -0
  132. skcomplex/core/laws/_rule.py +82 -0
  133. skcomplex/core/laws/_sample.py +65 -0
  134. skcomplex/core/laws/_transfer.py +165 -0
  135. skcomplex/core/laws/_transition.py +77 -0
  136. skcomplex/core/laws/_update.py +121 -0
  137. skcomplex/core/laws/utils/__init__.py +142 -0
  138. skcomplex/core/laws/utils/_agents.py +127 -0
  139. skcomplex/core/laws/utils/_components.py +63 -0
  140. skcomplex/core/laws/utils/_conditions.py +198 -0
  141. skcomplex/core/laws/utils/_contractions.py +74 -0
  142. skcomplex/core/laws/utils/_delays.py +170 -0
  143. skcomplex/core/laws/utils/_history.py +167 -0
  144. skcomplex/core/laws/utils/_local_operators.py +68 -0
  145. skcomplex/core/laws/utils/_lookups.py +40 -0
  146. skcomplex/core/laws/utils/_moments.py +122 -0
  147. skcomplex/core/laws/utils/_operators.py +237 -0
  148. skcomplex/core/laws/utils/_phase.py +126 -0
  149. skcomplex/core/laws/utils/_pointwise.py +160 -0
  150. skcomplex/core/laws/utils/_reductions.py +942 -0
  151. skcomplex/core/laws/utils/_signals.py +214 -0
  152. skcomplex/core/laws/utils/_tables.py +4 -0
  153. skcomplex/core/laws/utils/_tensors.py +235 -0
  154. skcomplex/core/spaces/__init__.py +52 -0
  155. skcomplex/core/spaces/_adjacency.py +34 -0
  156. skcomplex/core/spaces/_base.py +218 -0
  157. skcomplex/core/spaces/_box.py +41 -0
  158. skcomplex/core/spaces/_cayley.py +352 -0
  159. skcomplex/core/spaces/_cone.py +65 -0
  160. skcomplex/core/spaces/_continuous.py +93 -0
  161. skcomplex/core/spaces/_continuous_time.py +27 -0
  162. skcomplex/core/spaces/_discrete_time.py +53 -0
  163. skcomplex/core/spaces/_generator.py +51 -0
  164. skcomplex/core/spaces/_lattice.py +194 -0
  165. skcomplex/core/spaces/_lattice_neighborhood.py +50 -0
  166. skcomplex/core/spaces/_memory.py +45 -0
  167. skcomplex/core/spaces/_mesh.py +71 -0
  168. skcomplex/core/spaces/_moore.py +49 -0
  169. skcomplex/core/spaces/_nearest.py +41 -0
  170. skcomplex/core/spaces/_network.py +256 -0
  171. skcomplex/core/spaces/_phase.py +136 -0
  172. skcomplex/core/spaces/_radius.py +40 -0
  173. skcomplex/core/spaces/_static_time.py +34 -0
  174. skcomplex/core/spaces/_triangular.py +37 -0
  175. skcomplex/core/spaces/_von_neumann.py +51 -0
  176. skcomplex/core/specs/__init__.py +25 -0
  177. skcomplex/core/specs/_census_record_spec.py +72 -0
  178. skcomplex/core/specs/_census_spec.py +40 -0
  179. skcomplex/core/specs/_compiled_agents_spec.py +62 -0
  180. skcomplex/core/specs/_compiled_element_spec.py +59 -0
  181. skcomplex/core/specs/_compiled_interaction_spec.py +33 -0
  182. skcomplex/core/specs/_lattice_context_spec.py +40 -0
  183. skcomplex/core/specs/_lattice_state_spec.py +49 -0
  184. skcomplex/core/specs/_node_spec.py +64 -0
  185. skcomplex/core/specs/_operator_view_spec.py +135 -0
  186. skcomplex/core/specs/_scenario_spec.py +45 -0
  187. skcomplex/core/specs/_subsystem_spec.py +24 -0
  188. skcomplex/core/system.py +140 -0
  189. skcomplex/core/types.py +249 -0
  190. skcomplex/engine/__init__.py +5 -0
  191. skcomplex/engine/_utils.py +278 -0
  192. skcomplex/engine/backends/__init__.py +13 -0
  193. skcomplex/engine/backends/_base.py +329 -0
  194. skcomplex/engine/backends/_jax.py +285 -0
  195. skcomplex/engine/backends/_numba.py +601 -0
  196. skcomplex/engine/backends/_numba_components.py +67 -0
  197. skcomplex/engine/backends/_numba_loops.py +163 -0
  198. skcomplex/engine/backends/_numba_neighbours.py +435 -0
  199. skcomplex/engine/backends/_numba_printer.py +1023 -0
  200. skcomplex/engine/backends/_numba_stencils.py +66 -0
  201. skcomplex/engine/backends/_numpy.py +215 -0
  202. skcomplex/engine/compile/__init__.py +27 -0
  203. skcomplex/engine/compile/_base.py +582 -0
  204. skcomplex/engine/compile/_bound_renewal_spec.py +47 -0
  205. skcomplex/engine/compile/_compilation.py +351 -0
  206. skcomplex/engine/compile/_compile.py +100 -0
  207. skcomplex/engine/compile/_complex.py +216 -0
  208. skcomplex/engine/compile/_draw_lowering.py +373 -0
  209. skcomplex/engine/compile/_field_lowering.py +1668 -0
  210. skcomplex/engine/compile/_flows.py +691 -0
  211. skcomplex/engine/compile/_forms.py +48 -0
  212. skcomplex/engine/compile/_laws.py +42 -0
  213. skcomplex/engine/compile/_learning_compiler.py +481 -0
  214. skcomplex/engine/compile/_member_reductions.py +206 -0
  215. skcomplex/engine/compile/_members.py +244 -0
  216. skcomplex/engine/compile/_observables.py +940 -0
  217. skcomplex/engine/compile/_observer.py +185 -0
  218. skcomplex/engine/compile/_pass_compiler.py +1534 -0
  219. skcomplex/engine/compile/_probe.py +78 -0
  220. skcomplex/engine/compile/_renewal_law.py +70 -0
  221. skcomplex/engine/compile/passes/__init__.py +34 -0
  222. skcomplex/engine/compile/passes/_agents.py +111 -0
  223. skcomplex/engine/compile/passes/_agents_problem.py +143 -0
  224. skcomplex/engine/compile/passes/_census.py +808 -0
  225. skcomplex/engine/compile/passes/_check_fractional_noise.py +107 -0
  226. skcomplex/engine/compile/passes/_collect.py +31 -0
  227. skcomplex/engine/compile/passes/_compile_encounters.py +301 -0
  228. skcomplex/engine/compile/passes/_complex.py +198 -0
  229. skcomplex/engine/compile/passes/_conserved_noise.py +224 -0
  230. skcomplex/engine/compile/passes/_core.py +116 -0
  231. skcomplex/engine/compile/passes/_declare_renewals.py +84 -0
  232. skcomplex/engine/compile/passes/_draws.py +29 -0
  233. skcomplex/engine/compile/passes/_encounter_functions.py +60 -0
  234. skcomplex/engine/compile/passes/_encounter_jacobian.py +25 -0
  235. skcomplex/engine/compile/passes/_encounter_problem.py +32 -0
  236. skcomplex/engine/compile/passes/_events.py +204 -0
  237. skcomplex/engine/compile/passes/_expand_flows.py +32 -0
  238. skcomplex/engine/compile/passes/_field_functions.py +647 -0
  239. skcomplex/engine/compile/passes/_field_jacobian.py +38 -0
  240. skcomplex/engine/compile/passes/_field_problem.py +106 -0
  241. skcomplex/engine/compile/passes/_flatten.py +339 -0
  242. skcomplex/engine/compile/passes/_flows_problem.py +29 -0
  243. skcomplex/engine/compile/passes/_form.py +82 -0
  244. skcomplex/engine/compile/passes/_fractional_form.py +172 -0
  245. skcomplex/engine/compile/passes/_fractional_problem.py +91 -0
  246. skcomplex/engine/compile/passes/_functions.py +485 -0
  247. skcomplex/engine/compile/passes/_hilbert_space_error.py +10 -0
  248. skcomplex/engine/compile/passes/_hyperedges.py +598 -0
  249. skcomplex/engine/compile/passes/_jacobian.py +38 -0
  250. skcomplex/engine/compile/passes/_kernels.py +407 -0
  251. skcomplex/engine/compile/passes/_lattices.py +818 -0
  252. skcomplex/engine/compile/passes/_layout.py +667 -0
  253. skcomplex/engine/compile/passes/_lower_fields.py +225 -0
  254. skcomplex/engine/compile/passes/_lower_flows.py +28 -0
  255. skcomplex/engine/compile/passes/_markov.py +329 -0
  256. skcomplex/engine/compile/passes/_mask_requests.py +121 -0
  257. skcomplex/engine/compile/passes/_members.py +30 -0
  258. skcomplex/engine/compile/passes/_noise.py +196 -0
  259. skcomplex/engine/compile/passes/_operator_compiler.py +843 -0
  260. skcomplex/engine/compile/passes/_orders.py +409 -0
  261. skcomplex/engine/compile/passes/_owners.py +90 -0
  262. skcomplex/engine/compile/passes/_particles.py +69 -0
  263. skcomplex/engine/compile/passes/_plan.py +130 -0
  264. skcomplex/engine/compile/passes/_problem.py +802 -0
  265. skcomplex/engine/compile/passes/_reduction_lowering.py +1193 -0
  266. skcomplex/engine/compile/passes/_reductions.py +84 -0
  267. skcomplex/engine/compile/passes/_renewal_problem.py +357 -0
  268. skcomplex/engine/compile/passes/_request_jumps.py +51 -0
  269. skcomplex/engine/compile/passes/_residences.py +140 -0
  270. skcomplex/engine/compile/passes/_rows.py +162 -0
  271. skcomplex/engine/compile/passes/_set_renewals_apart.py +29 -0
  272. skcomplex/engine/compile/passes/_set_rules_apart.py +28 -0
  273. skcomplex/engine/compile/passes/_specs.py +1317 -0
  274. skcomplex/engine/compile/passes/_split_requests.py +44 -0
  275. skcomplex/engine/compile/passes/_topology_functions.py +265 -0
  276. skcomplex/engine/compile/passes/_topology_problem.py +27 -0
  277. skcomplex/engine/compile/passes/_towards.py +66 -0
  278. skcomplex/engine/compile/passes/_unpack_matches.py +29 -0
  279. skcomplex/engine/compile/passes/_unpack_renewals.py +41 -0
  280. skcomplex/engine/problems/__init__.py +61 -0
  281. skcomplex/engine/problems/_base.py +150 -0
  282. skcomplex/engine/problems/_base_problem_spec.py +153 -0
  283. skcomplex/engine/problems/_block_spec.py +48 -0
  284. skcomplex/engine/problems/_born_spec.py +24 -0
  285. skcomplex/engine/problems/_cascade_kernel.py +134 -0
  286. skcomplex/engine/problems/_collision_kernel.py +147 -0
  287. skcomplex/engine/problems/_compiled_delay_spec.py +21 -0
  288. skcomplex/engine/problems/_compiled_request_spec.py +46 -0
  289. skcomplex/engine/problems/_control_problem_spec.py +90 -0
  290. skcomplex/engine/problems/_declarations_spec.py +126 -0
  291. skcomplex/engine/problems/_delayed_state_spec.py +50 -0
  292. skcomplex/engine/problems/_diffusive_limit_spec.py +50 -0
  293. skcomplex/engine/problems/_draw_kernel.py +128 -0
  294. skcomplex/engine/problems/_drive_kernel.py +65 -0
  295. skcomplex/engine/problems/_dynamics_spec.py +28 -0
  296. skcomplex/engine/problems/_edge_row_search.py +78 -0
  297. skcomplex/engine/problems/_edge_search.py +64 -0
  298. skcomplex/engine/problems/_encounter_kernel.py +200 -0
  299. skcomplex/engine/problems/_event_kernel.py +70 -0
  300. skcomplex/engine/problems/_expression_printer.py +410 -0
  301. skcomplex/engine/problems/_extremal_kernel.py +125 -0
  302. skcomplex/engine/problems/_field_operator_kernel.py +105 -0
  303. skcomplex/engine/problems/_finite_volume_kernel.py +423 -0
  304. skcomplex/engine/problems/_flow_term_spec.py +45 -0
  305. skcomplex/engine/problems/_frame_spec.py +105 -0
  306. skcomplex/engine/problems/_jacobian_kernel.py +575 -0
  307. skcomplex/engine/problems/_kernel_spec.py +130 -0
  308. skcomplex/engine/problems/_kinetic_problem_spec.py +23 -0
  309. skcomplex/engine/problems/_law_kernel.py +604 -0
  310. skcomplex/engine/problems/_learning_problem_spec.py +67 -0
  311. skcomplex/engine/problems/_linear_term_spec.py +50 -0
  312. skcomplex/engine/problems/_loop_term_spec.py +44 -0
  313. skcomplex/engine/problems/_lowered_kernels_spec.py +59 -0
  314. skcomplex/engine/problems/_markov_kernel.py +68 -0
  315. skcomplex/engine/problems/_metric_search.py +155 -0
  316. skcomplex/engine/problems/_monte_carlo_kernel.py +213 -0
  317. skcomplex/engine/problems/_neighborhood_kernel.py +594 -0
  318. skcomplex/engine/problems/_noise_term_spec.py +26 -0
  319. skcomplex/engine/problems/_observed_spec.py +22 -0
  320. skcomplex/engine/problems/_operator_kernel.py +102 -0
  321. skcomplex/engine/problems/_operator_lowering.py +323 -0
  322. skcomplex/engine/problems/_operator_problem_spec.py +138 -0
  323. skcomplex/engine/problems/_output_spec.py +78 -0
  324. skcomplex/engine/problems/_pair_search.py +86 -0
  325. skcomplex/engine/problems/_partials_spec.py +27 -0
  326. skcomplex/engine/problems/_partition_spec.py +39 -0
  327. skcomplex/engine/problems/_printed_spec.py +24 -0
  328. skcomplex/engine/problems/_problem_functions_spec.py +102 -0
  329. skcomplex/engine/problems/_problem_spec.py +365 -0
  330. skcomplex/engine/problems/_random_stream.py +49 -0
  331. skcomplex/engine/problems/_record_spec.py +22 -0
  332. skcomplex/engine/problems/_recorded_spec.py +21 -0
  333. skcomplex/engine/problems/_reduction_kernel.py +254 -0
  334. skcomplex/engine/problems/_reduction_schedule_spec.py +97 -0
  335. skcomplex/engine/problems/_reference_spec.py +114 -0
  336. skcomplex/engine/problems/_relation_spec.py +29 -0
  337. skcomplex/engine/problems/_renewal_kernel.py +250 -0
  338. skcomplex/engine/problems/_request_spec.py +27 -0
  339. skcomplex/engine/problems/_rule_kernel.py +227 -0
  340. skcomplex/engine/problems/_set_symbol_spec.py +28 -0
  341. skcomplex/engine/problems/_source_loader.py +113 -0
  342. skcomplex/engine/problems/_static_search.py +42 -0
  343. skcomplex/engine/problems/_steps.py +39 -0
  344. skcomplex/engine/problems/_sweep_spec.py +26 -0
  345. skcomplex/engine/problems/_symmetry_spec.py +29 -0
  346. skcomplex/engine/problems/_too_dense.py +8 -0
  347. skcomplex/engine/problems/_topology_kernel.py +589 -0
  348. skcomplex/engine/problems/_transfer_network.py +4 -0
  349. skcomplex/engine/problems/_transfer_network_spec.py +50 -0
  350. skcomplex/engine/problems/_transfer_state_spec.py +68 -0
  351. skcomplex/engine/runtime/__init__.py +22 -0
  352. skcomplex/engine/runtime/_as_fast_as_possible.py +17 -0
  353. skcomplex/engine/runtime/_base.py +137 -0
  354. skcomplex/engine/runtime/_conservation.py +125 -0
  355. skcomplex/engine/runtime/_invariants.py +100 -0
  356. skcomplex/engine/runtime/_real_time.py +55 -0
  357. skcomplex/engine/runtime/_recorder.py +84 -0
  358. skcomplex/engine/runtime/_simulations.py +665 -0
  359. skcomplex/engine/runtime/_trajectories.py +314 -0
  360. skcomplex/engine/solvers/__init__.py +95 -0
  361. skcomplex/engine/solvers/_base.py +372 -0
  362. skcomplex/engine/solvers/_caputo.py +194 -0
  363. skcomplex/engine/solvers/_collocation.py +334 -0
  364. skcomplex/engine/solvers/_convolution.py +155 -0
  365. skcomplex/engine/solvers/_cosimulation.py +400 -0
  366. skcomplex/engine/solvers/_crank_nicolson.py +32 -0
  367. skcomplex/engine/solvers/_defaults.py +34 -0
  368. skcomplex/engine/solvers/_etdrk4.py +86 -0
  369. skcomplex/engine/solvers/_euler_maruyama.py +161 -0
  370. skcomplex/engine/solvers/_event_locator.py +249 -0
  371. skcomplex/engine/solvers/_external.py +94 -0
  372. skcomplex/engine/solvers/_fractional_abm.py +126 -0
  373. skcomplex/engine/solvers/_fractional_euler_maruyama.py +322 -0
  374. skcomplex/engine/solvers/_gillespie.py +135 -0
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  1620. skcomplex/models/social/segregation/_resident_view.py +13 -0
  1621. skcomplex/models/social/segregation/_schelling.py +75 -0
  1622. skcomplex/models/social/spreading/__init__.py +37 -0
  1623. skcomplex/models/social/spreading/_cascades.py +118 -0
  1624. skcomplex/models/social/spreading/_exposure.py +166 -0
  1625. skcomplex/models/social/spreading/_growing_word.py +55 -0
  1626. skcomplex/models/social/spreading/_growing_word_view.py +13 -0
  1627. skcomplex/models/social/spreading/_growth.py +52 -0
  1628. skcomplex/models/social/spreading/_infective.py +55 -0
  1629. skcomplex/models/social/spreading/_listeners.py +41 -0
  1630. skcomplex/models/social/spreading/_participant.py +50 -0
  1631. skcomplex/models/social/spreading/_rumour_contacts.py +81 -0
  1632. skcomplex/models/social/spreading/_rumours.py +57 -0
  1633. skcomplex/models/social/spreading/_simplicial.py +120 -0
  1634. skcomplex/models/social/spreading/_simplicial_infection.py +64 -0
  1635. skcomplex/models/social/spreading/_threshold_activation.py +50 -0
  1636. skcomplex/models/social/spreading/_threshold_node_view.py +13 -0
  1637. skcomplex/models/social/spreading/_writing.py +86 -0
  1638. skcomplex/models/types.py +10 -0
  1639. skcomplex/specs/__init__.py +198 -0
  1640. skcomplex/specs/_accelerated_spec.py +46 -0
  1641. skcomplex/specs/_agent_snapshot_spec.py +34 -0
  1642. skcomplex/specs/_agent_state_spec.py +26 -0
  1643. skcomplex/specs/_arguments_spec.py +60 -0
  1644. skcomplex/specs/_axis_spec.py +59 -0
  1645. skcomplex/specs/_base_record_spec.py +16 -0
  1646. skcomplex/specs/_base_spec.py +73 -0
  1647. skcomplex/specs/_base_structure_spec.py +173 -0
  1648. skcomplex/specs/_batch_matching_spec.py +23 -0
  1649. skcomplex/specs/_breakpoints_spec.py +58 -0
  1650. skcomplex/specs/_call_spec.py +64 -0
  1651. skcomplex/specs/_capacity_rows_spec.py +120 -0
  1652. skcomplex/specs/_cardinality_spec.py +58 -0
  1653. skcomplex/specs/_cascade_record_spec.py +36 -0
  1654. skcomplex/specs/_clamp_spec.py +54 -0
  1655. skcomplex/specs/_clause_spec.py +42 -0
  1656. skcomplex/specs/_compiled_flow_spec.py +20 -0
  1657. skcomplex/specs/_composed_rule_spec.py +33 -0
  1658. skcomplex/specs/_continuous_matching_spec.py +48 -0
  1659. skcomplex/specs/_control_solution_spec.py +54 -0
  1660. skcomplex/specs/_control_spec.py +21 -0
  1661. skcomplex/specs/_covariance_adaptation_spec.py +25 -0
  1662. skcomplex/specs/_dataset_spec.py +85 -0
  1663. skcomplex/specs/_delay_spec.py +27 -0
  1664. skcomplex/specs/_dialect_spec.py +207 -0
  1665. skcomplex/specs/_differential_evolution_spec.py +33 -0
  1666. skcomplex/specs/_direction_spec.py +44 -0
  1667. skcomplex/specs/_draw_spec.py +273 -0
  1668. skcomplex/specs/_entry_spec.py +403 -0
  1669. skcomplex/specs/_event_record_spec.py +37 -0
  1670. skcomplex/specs/_evolution_strategy_spec.py +25 -0
  1671. skcomplex/specs/_extremal_record_spec.py +32 -0
  1672. skcomplex/specs/_fractional_rows_spec.py +33 -0
  1673. skcomplex/specs/_fractional_state_spec.py +30 -0
  1674. skcomplex/specs/_held_reduction_spec.py +29 -0
  1675. skcomplex/specs/_hilbert_spec.py +75 -0
  1676. skcomplex/specs/_hyperedge_reduction_spec.py +38 -0
  1677. skcomplex/specs/_issue_spec.py +52 -0
  1678. skcomplex/specs/_iterative_matching_spec.py +39 -0
  1679. skcomplex/specs/_jump_channels_spec.py +40 -0
  1680. skcomplex/specs/_jump_path_spec.py +29 -0
  1681. skcomplex/specs/_layer_spec.py +47 -0
  1682. skcomplex/specs/_layout_spec.py +158 -0
  1683. skcomplex/specs/_local_operator_spec.py +72 -0
  1684. skcomplex/specs/_lookup_spec.py +33 -0
  1685. skcomplex/specs/_loop_spec.py +17 -0
  1686. skcomplex/specs/_lowered_functions_spec.py +71 -0
  1687. skcomplex/specs/_match_spec.py +37 -0
  1688. skcomplex/specs/_matrix_law_spec.py +31 -0
  1689. skcomplex/specs/_move_spec.py +69 -0
  1690. skcomplex/specs/_neighbor_read_spec.py +83 -0
  1691. skcomplex/specs/_neighbor_reduction_spec.py +39 -0
  1692. skcomplex/specs/_network_rows_spec.py +124 -0
  1693. skcomplex/specs/_network_snapshot_spec.py +61 -0
  1694. skcomplex/specs/_noise_process_spec.py +41 -0
  1695. skcomplex/specs/_objective_spec.py +39 -0
  1696. skcomplex/specs/_observable_spec.py +79 -0
  1697. skcomplex/specs/_operator_spec.py +170 -0
  1698. skcomplex/specs/_orders_spec.py +16 -0
  1699. skcomplex/specs/_outer_totalistic_spec.py +38 -0
  1700. skcomplex/specs/_owners_spec.py +28 -0
  1701. skcomplex/specs/_pair_read_spec.py +38 -0
  1702. skcomplex/specs/_parameter_spec.py +81 -0
  1703. skcomplex/specs/_parameters_spec.py +26 -0
  1704. skcomplex/specs/_particle_swarm_spec.py +33 -0
  1705. skcomplex/specs/_partner_spec.py +98 -0
  1706. skcomplex/specs/_partner_switch_spec.py +39 -0
  1707. skcomplex/specs/_phase_spec.py +61 -0
  1708. skcomplex/specs/_phases_schedule_spec.py +59 -0
  1709. skcomplex/specs/_plan_spec.py +18 -0
  1710. skcomplex/specs/_planned_partition_spec.py +30 -0
  1711. skcomplex/specs/_queue_spec.py +46 -0
  1712. skcomplex/specs/_radius_spec.py +66 -0
  1713. skcomplex/specs/_random_search_spec.py +51 -0
  1714. skcomplex/specs/_read_spec.py +45 -0
  1715. skcomplex/specs/_reduction_spec.py +48 -0
  1716. skcomplex/specs/_renewal_record_spec.py +49 -0
  1717. skcomplex/specs/_requirement_spec.py +32 -0
  1718. skcomplex/specs/_role_spec.py +54 -0
  1719. skcomplex/specs/_run_result_spec.py +52 -0
  1720. skcomplex/specs/_run_state_spec.py +41 -0
  1721. skcomplex/specs/_sampled_draw_spec.py +32 -0
  1722. skcomplex/specs/_sampler_spec.py +57 -0
  1723. skcomplex/specs/_samples_spec.py +29 -0
  1724. skcomplex/specs/_schedule_spec.py +17 -0
  1725. skcomplex/specs/_sector_spec.py +31 -0
  1726. skcomplex/specs/_segment_spec.py +21 -0
  1727. skcomplex/specs/_series_spec.py +29 -0
  1728. skcomplex/specs/_signature_spec.py +55 -0
  1729. skcomplex/specs/_snapshots_spec.py +56 -0
  1730. skcomplex/specs/_stable_matching_spec.py +58 -0
  1731. skcomplex/specs/_state_spec.py +138 -0
  1732. skcomplex/specs/_step_spec.py +39 -0
  1733. skcomplex/specs/_structure_state_spec.py +30 -0
  1734. skcomplex/specs/_support_spec.py +76 -0
  1735. skcomplex/specs/_symmetry_spec.py +59 -0
  1736. skcomplex/specs/_table_spec.py +42 -0
  1737. skcomplex/specs/_table_values_spec.py +36 -0
  1738. skcomplex/specs/_tensor_spec.py +197 -0
  1739. skcomplex/specs/_topology_request_spec.py +97 -0
  1740. skcomplex/specs/_totalistic_spec.py +37 -0
  1741. skcomplex/specs/_unknown_spec.py +22 -0
  1742. skcomplex/specs/_validation_report_spec.py +62 -0
  1743. skcomplex/specs/_variable_spec.py +124 -0
  1744. skcomplex/specs/_visual_spec.py +30 -0
  1745. skcomplex/specs/_weight_spec.py +16 -0
  1746. skcomplex/specs/_wiener_block_spec.py +31 -0
  1747. skcomplex/specs/_wiener_process_spec.py +54 -0
  1748. skcomplex/types.py +140 -0
@@ -0,0 +1,669 @@
1
+ """Define transfers, which move amounts of states between members, the cells agents stand on, sources, and sinks."""
2
+
3
+ # Author: Georgios Douzas <gdouzas@icloud.com>
4
+ # License: MIT
5
+
6
+ from collections.abc import Callable, Sequence
7
+ from types import SimpleNamespace
8
+ from typing import Annotated, cast
9
+
10
+ import numpy as np
11
+ from sage.all__sagemath_symbolics import Expression
12
+
13
+ from ...errors import SimulationError, ValidationError
14
+ from ...specs import PartnerSpec, RoleSpec
15
+ from ..laws import BaseLaw, MatchLaw, RuleLaw, Sink, Source, TransferLaw
16
+ from ..laws.utils import shift_member, where
17
+ from ..spaces import BaseSpace
18
+ from ..types import AgentViewProtocol, ModelViewProtocol, Pairing
19
+ from ._interaction import Interaction
20
+
21
+ FORMS = ('symbolic', 'agent')
22
+ PAIRINGS = ('members', 'random', 'pairs', 'neighbors', 'neighbor-pairs', 'cell', 'site')
23
+ GRID_PAIRINGS = ('neighbors', 'neighbor-pairs', 'cell', 'site')
24
+ SCHEDULES = ('random-sequential', 'member')
25
+ ACTORS = ('source', 'target')
26
+ REMOVALS = ('source', 'target')
27
+ LEG_LENGTHS = (3, 4)
28
+ BOUNDARIES = ('periodic', 'fixed')
29
+ NAMED_PARTNERS = {
30
+ 'random': PartnerSpec('all', 'uniform'),
31
+ 'pairs': PartnerSpec('all', 'uniform', capacity=1),
32
+ 'neighbors': PartnerSpec('neighbors', 'all'),
33
+ 'neighbor-pairs': PartnerSpec('neighbors', 'uniform', capacity=1),
34
+ 'cell': PartnerSpec('cell', 'all'),
35
+ }
36
+
37
+ type Amount = float | Callable[..., object]
38
+ type Leg = tuple[str | Source, str | Sink | None, Amount] | tuple[str | Source, str | Sink | None, Amount, str]
39
+ type NamedLeg = tuple[str | Source, str | Sink | None, Amount, str]
40
+ type Settlement = Callable[..., None]
41
+
42
+
43
+ class TransferInteraction(Interaction):
44
+ """Transfer of amounts of states from the members of a source role to the members of a target role.
45
+
46
+ A leg moves an amount out of a state of the source member, or out of `Source()`, into a state of the target member,
47
+ or into `Sink()`. The transfer has a first leg, `state` into `into` by `amount`, and any further `legs`, each
48
+ `(state, into, amount)` or `(state, into, amount, flow)`. The amounts of all legs are read before any of them
49
+ moves, so a leg sees the states as they were before the transfer. A guard skips the transfer where it does not
50
+ hold.
51
+
52
+ The symbolic form reports the amount of every leg as a flow. A leg named by its `flow` is reported under that
53
+ name: under the element or group, as `<path>.<flow>`, when the source and the target are one element or group,
54
+ since the flow then moves a quantity within it like a flow of its own, and under the interaction, as
55
+ `<label>.<flow>`, otherwise, as it is for a subclass that names its roles otherwise. A leg without a name is
56
+ reported under the interaction as `<label>.flow_<index>`.
57
+
58
+ The form chooses how the transfer lowers:
59
+
60
+ - `'symbolic'` lowers to `TransferLaw`s between the source and the target of one element, or member `i` of both
61
+ groups. The amounts, the guard, and the rates are numbers or functions of the namespace, and the roles are read
62
+ as `namespace.source` and `namespace.target`. With a `rate`, the amount is the size of a jump at the rate, and
63
+ with a `reverse_rate` jumps also move the amounts back from the target to the source at that rate, so a leg from
64
+ `Source()` returns its amount to the environment. With an `offset`, the source is a group and every member
65
+ transfers along an edge of the group order, to the member `offset` places along it, which `namespace.target`
66
+ reads. Past the ends of a `'fixed'` boundary no member is there, and the edge moves nothing. A draw in an amount
67
+ is one draw per edge, which both of its ends read, so the amounts of a step move in parallel. A leg end
68
+ `'<role>.<state>'` names the state of the element or group another role binds, so one transfer moves amounts
69
+ between several holders, such as the payments of a circuit of sectors, and a subclass that declares parameters
70
+ reads them in its amounts. A subclass that names its roles otherwise returns their names from `_get_role`, or
71
+ the namespaces of the source and the target of every pair from `_get_holders`.
72
+ - `'agent'` lowers to an agent rule, whose amounts and guard are numbers or functions of the source agent, the
73
+ target agent, and the model view. The pairing `'members'` pairs member `i` of both groups, `'random'` pairs every
74
+ source member with a random target member, `'pairs'` draws disjoint random pairs, `'neighbors'` pairs every
75
+ source member with the target members in the cells or nodes around it, `'neighbor-pairs'` draws disjoint random
76
+ pairs of neighbours, every source member in random order taking a random unpaired target member around it, and
77
+ `'cell'` pairs the source and target members that stand in one cell or node. With a `fallback` group, the members
78
+ of that group are the targets of a step in which no target member lives. With the pairing `'site'` the target
79
+ role binds a field, and every source member moves its amounts into the site of the field at its cell or node, so
80
+ a negative amount takes from the site. The functions of this pairing take the cell of the source agent in place
81
+ of a target agent. With `remove`, the source or the target member of every pair that transfers is removed, as an
82
+ agent eaten whole. The named pairings other than `'members'` and `'site'` are shorthands of a `PartnerSpec`, which
83
+ pairs every source member with partners within a radius, by score, or with a fallback. A `settlement` receives
84
+ both partners and the amounts of the legs, read once, and changes the states in place of the legs, so one draw
85
+ credits both ends. A subclass that names its roles otherwise returns their names from `_get_role`.
86
+
87
+ Under the schedule `'random-sequential'` the pairs act in random order. Under `'member'` every member of the
88
+ `actor` role acts in its own activation, together with the rules of its element and the other member
89
+ interactions, in the order the system lists them: it transfers with its partners, the members of the other role
90
+ that the pairing `'random'`, `'neighbors'`, or `'cell'` gives it, or with `partners` of them drawn at random, and
91
+ with itself under the pairing `'members'` within one group.
92
+ A leg end of the agent form may name `'<reference>.<state>'`, the state of the member that a reference state of
93
+ the agent names, such as `'bank.deposits'` for the deposits of a customer's bank, declared
94
+ `StateSpec(reference='banks')`.
95
+
96
+ Args:
97
+ label:
98
+ The label of the interaction, unique among the parts of its system.
99
+
100
+ source:
101
+ The path of the element or group the amounts leave.
102
+
103
+ target:
104
+ The path of the element or group the amounts enter, the source again for a transfer within members.
105
+
106
+ state:
107
+ The name of the state of the source the first leg takes from, or `Source()` for the environment.
108
+
109
+ into:
110
+ The name of the state of the target the first leg adds to, `Sink()` for the environment, or `None` for
111
+ `state`.
112
+
113
+ amount:
114
+ The amount of the first leg, a number or a function.
115
+
116
+ flow:
117
+ The name the symbolic form reports the first leg under, or the empty string for `flow_0`.
118
+
119
+ pairing:
120
+ How members are paired, one of `'members'`, `'random'`, `'pairs'`, `'neighbors'`, `'neighbor-pairs'`,
121
+ `'cell'`, or `'site'`, the agent form alone taking the others than `'members'`, or, in the agent form, a
122
+ `PartnerSpec`, or a function `pairing(sources, targets, rng, capacity)` of the source and target agents
123
+ that returns their pairs, whose capacity is `partners`, or 1 without it. Under the schedule `'member'` the
124
+ spec or the function receives the actor alone as its first sequence and the actor's partners are the second
125
+ items of its pairs.
126
+
127
+ legs:
128
+ Further legs, each a tuple of a state or `Source()`, a state, `Sink()`, or `None`, an amount, and
129
+ optionally the name of its flow.
130
+
131
+ fallback:
132
+ The path of the group whose members the agent form pairs with instead of the target members in a step in
133
+ which no target member lives, or `None` for no fallback.
134
+
135
+ guard:
136
+ A function that returns whether a pair transfers, a condition of the namespace or a boolean of the agents,
137
+ or `None` for every pair.
138
+
139
+ rate:
140
+ The rate of jumps of the symbolic form, a number or a function of the namespace, or `None` for a
141
+ continuous flow.
142
+
143
+ reverse_rate:
144
+ The rate of the jumps of the symbolic form that move the amounts back from the target to the source, a
145
+ number or a function of the namespace, or `None` for no reverse jumps.
146
+
147
+ offset:
148
+ The number of places along the group order from every source member to its target member, or 0 to pair
149
+ the members of the roles.
150
+
151
+ boundary:
152
+ Past the ends of the group order, `'periodic'` closes a ring and `'fixed'` holds no member.
153
+
154
+ form:
155
+ The lowering, `'symbolic'` to transfer laws or `'agent'` to an agent rule.
156
+
157
+ schedule:
158
+ The order of the agent form, `'random-sequential'` over the pairs, or `'member'` over the actors.
159
+
160
+ actor:
161
+ The role whose members act under the schedule `'member'`, `'source'` or `'target'`.
162
+
163
+ partners:
164
+ The number of partners an actor draws at random under the schedule `'member'`, or `None` for all of them.
165
+
166
+ remove:
167
+ The member of a pair that transfers that is removed, `'source'`, `'target'`, or `None`.
168
+
169
+ phase:
170
+ The phase the rule of the agent form runs in, or `None` for the default phase.
171
+
172
+ settlement:
173
+ A function `settlement(source, target, amounts, model)` that settles a pair of agents from the amounts of
174
+ the legs, read once, in place of moving them, or `None` to move them.
175
+
176
+ Raises:
177
+ ValidationError:
178
+ The form, the pairing, the schedule, the actor, the removal, or the boundary is unknown, a leg is
179
+ malformed, two legs share a flow name, the symbolic form has an agent pairing, a fallback, or a settlement,
180
+ the agent form a rate, an offset, or a flow name, a reverse rate has no rate, an offset is not a whole
181
+ number or pairs two groups, a leg end of the symbolic form names no role, the settlement cannot be called
182
+ or pairs with a site, or the schedule `'member'` has a pairing it cannot draw, raised by `check`.
183
+
184
+ Examples:
185
+ >>> from skcomplex.core.elements import Element
186
+ >>> from skcomplex.core.interactions import TransferInteraction
187
+ >>> from skcomplex.core.system import System
188
+ >>> from skcomplex.engine.runtime import Simulation
189
+ >>> from skcomplex.specs import StateSpec
190
+ >>> from typing import Annotated
191
+ >>> class TankElement(Element):
192
+ ... def __init__(self, label, visual=None, *, level: Annotated[float, StateSpec()] = 0.0):
193
+ ... super().__init__(label, visual=visual)
194
+ ... self.level = level
195
+ >>> flow = TransferInteraction(
196
+ ... 'flow', source='upper', target='lower', state='level', amount=lambda s: s.source.level / 2
197
+ ... )
198
+ >>> system = System(elements=[TankElement('upper', level=4.0), TankElement('lower')], interactions=[flow])
199
+ >>> trajectory = Simulation(system).check().prepare().run(until=1.0).trajectory_
200
+ >>> round(float(trajectory.values('upper.level')[-1] + trajectory.values('lower.level')[-1]), 6)
201
+ 4.0
202
+ """
203
+
204
+ def __init__(
205
+ self,
206
+ label: str,
207
+ *,
208
+ source: Annotated[str, RoleSpec()],
209
+ target: Annotated[str, RoleSpec()],
210
+ state: str | Source,
211
+ into: str | Sink | None = None,
212
+ amount: Amount,
213
+ flow: str = '',
214
+ pairing: str | Pairing = 'members',
215
+ legs: Sequence[Leg] = (),
216
+ fallback: Annotated[str | None, RoleSpec()] = None,
217
+ guard: Callable[..., object] | None = None,
218
+ rate: Amount | None = None,
219
+ reverse_rate: Amount | None = None,
220
+ offset: int = 0,
221
+ boundary: str = 'periodic',
222
+ form: str = 'symbolic',
223
+ schedule: str = 'random-sequential',
224
+ actor: str = 'source',
225
+ partners: int | None = None,
226
+ remove: str | None = None,
227
+ phase: str | None = None,
228
+ settlement: Settlement | None = None,
229
+ ) -> None:
230
+ super().__init__(label)
231
+ self.source = source
232
+ self.target = target
233
+ self.state = state
234
+ self.into = into
235
+ self.amount = amount
236
+ self.flow = flow
237
+ self.pairing = pairing
238
+ self.legs = legs
239
+ self.fallback = fallback
240
+ self.guard = guard
241
+ self.rate = rate
242
+ self.reverse_rate = reverse_rate
243
+ self.offset = offset
244
+ self.boundary = boundary
245
+ self.form = form
246
+ self.schedule = schedule
247
+ self.actor = actor
248
+ self.partners = partners
249
+ self.remove = remove
250
+ self.phase = phase
251
+ self.settlement = settlement
252
+
253
+ def _get_legs(self) -> list[NamedLeg]:
254
+ """Return every leg with the state it adds to resolved and the name of its flow, empty when it has none."""
255
+ legs: list[NamedLeg] = []
256
+ for state, into, amount, *flow in ((self.state, self.into, self.amount, self.flow), *self.legs):
257
+ name = flow[0] if flow else ''
258
+ legs.append((state, state if into is None and isinstance(state, str) else into, amount, name))
259
+ return legs
260
+
261
+ def _check_leg(self, state: object, into: object, amount: object, flow: object) -> None:
262
+ """Raise an error for a leg with unusable ends, amount, or flow name, or a symbolic end that names no role."""
263
+ if not isinstance(state, str | Source) or not isinstance(into, str | Sink):
264
+ error_msg = (
265
+ f'A leg of {self.label!r} moves {state!r} into {into!r}. Give a state name or `Source()` it leaves, '
266
+ 'and a state name or `Sink()` it enters.'
267
+ )
268
+ raise ValidationError(error_msg)
269
+ if isinstance(state, Source) and isinstance(into, Sink):
270
+ error_msg = f'A leg of {self.label!r} moves from `Source()` into `Sink()`. Name a state of one end.'
271
+ raise ValidationError(error_msg)
272
+ if not callable(amount) and not isinstance(amount, int | float):
273
+ error_msg = f'The amount {amount!r} of {self.label!r} is neither a number nor a function.'
274
+ raise ValidationError(error_msg)
275
+ if not isinstance(flow, str):
276
+ error_msg = f'A leg of {self.label!r} names its flow {flow!r}. Give a string, or the empty string.'
277
+ raise ValidationError(error_msg)
278
+ roles = [name for name, spec in self._get_specs().items() if isinstance(spec, RoleSpec)]
279
+ referenced = [end for end in (state, into) if isinstance(end, str) and '.' in end]
280
+ unknown = [end for end in referenced if end.partition('.')[0] not in roles]
281
+ if unknown and self.form == 'symbolic':
282
+ error_msg = (
283
+ f'{self.label!r} moves {unknown[0]!r}, but its symbolic form names the states of roles, one of '
284
+ f'{", ".join(roles)}. Name a role, or use `form="agent"` for a referenced member.'
285
+ )
286
+ raise ValidationError(error_msg)
287
+
288
+ def _check_flows(self) -> None:
289
+ """Raise an error for flow names that two legs share, or that the agent form, which reports no flows, takes."""
290
+ names = [leg[3] for leg in self._get_legs() if leg[3]]
291
+ if len(set(names)) < len(names):
292
+ error_msg = f'Two legs of {self.label!r} share a flow name among {names!r}. Give every flow its own name.'
293
+ raise ValidationError(error_msg)
294
+ if names and self.form == 'agent':
295
+ error_msg = f'The agent form of {self.label!r} reports no flows, but it names {names!r}. Remove the names.'
296
+ raise ValidationError(error_msg)
297
+
298
+ def _check_space(self, space: BaseSpace | None) -> None:
299
+ """Raise an error for a pairing of cells, nodes, or sites in a continuous space."""
300
+ if isinstance(self.pairing, str) and self.pairing in GRID_PAIRINGS:
301
+ alternative = "a radius pairing, `PartnerSpec(candidates=<radius>)`, or pairing='random'"
302
+ self._check_grid('pairing', self.pairing, space, alternative)
303
+ self._check_partners(self.pairing, space)
304
+
305
+ def _check(self) -> None:
306
+ """Raise an error for an unknown form or pairing, a malformed leg, or an option the form does not take.
307
+
308
+ Raises:
309
+ ValidationError:
310
+ The form, the pairing, the schedule, the actor, the removal, or the boundary is unknown, a leg is
311
+ malformed, two legs share a flow name, the symbolic form has an agent pairing, a fallback, or a leg end
312
+ that names no role, the agent form has a rate, an offset, or a flow name, a reverse rate has no rate,
313
+ an offset is not a whole number or pairs two groups, or the schedule `'member'` has a pairing it
314
+ cannot draw.
315
+ """
316
+ super()._check()
317
+ if self.form not in FORMS:
318
+ error_msg = f'Unknown form {self.form!r} of {self.label!r}. Use one of {", ".join(FORMS)}.'
319
+ raise ValidationError(error_msg)
320
+ if self.form == 'symbolic' and self.pairing != 'members':
321
+ error_msg = f'The symbolic form of {self.label!r} pairs members. Use `form="agent"` for {self.pairing!r}.'
322
+ raise ValidationError(error_msg)
323
+ self._check_variant('pairing', self.pairing, PAIRINGS, (PartnerSpec,), functions=True)
324
+ if isinstance(self.pairing, PartnerSpec):
325
+ self.pairing.check()
326
+ self._check_settlement()
327
+ if self.form == 'symbolic' and self.fallback is not None:
328
+ error_msg = f'The symbolic form of {self.label!r} pairs members. Use `form="agent"` for a fallback group.'
329
+ raise ValidationError(error_msg)
330
+ for leg in self.legs:
331
+ if not isinstance(leg, tuple) or len(leg) not in LEG_LENGTHS:
332
+ error_msg = f'A leg of {self.label!r} is {leg!r}. Give a tuple `(state, into, amount[, flow])`.'
333
+ raise ValidationError(error_msg)
334
+ for state, into, amount, flow in self._get_legs():
335
+ self._check_leg(state, into, amount, flow)
336
+ self._check_flows()
337
+ if self.rate is not None and self.form == 'agent':
338
+ error_msg = f'{self.label!r} has a rate, which only the symbolic form takes. Give `rate=None`.'
339
+ raise ValidationError(error_msg)
340
+ if self.guard is not None and not callable(self.guard):
341
+ error_msg = f'The guard of {self.label!r} is {self.guard!r}. Give a function, or None.'
342
+ raise ValidationError(error_msg)
343
+ self._check_edges()
344
+ self._check_schedule()
345
+
346
+ def _check_settlement(self) -> None:
347
+ """Raise an error for a settlement that cannot be called, or that the form or the pairing does not take."""
348
+ if self.settlement is None:
349
+ return
350
+ if not callable(self.settlement):
351
+ error_msg = f'The settlement of {self.label!r} is {self.settlement!r}. Give a function, or None.'
352
+ raise ValidationError(error_msg)
353
+ if self.form != 'agent' or self.pairing == 'site':
354
+ error_msg = f'{self.label!r} settles a pair of agents. Use `form="agent"` and a pairing other than `site`.'
355
+ raise ValidationError(error_msg)
356
+
357
+ def _check_edges(self) -> None:
358
+ """Raise an error for an unusable reverse rate, offset, or boundary."""
359
+ if self.reverse_rate is not None and self.rate is None:
360
+ error_msg = f'{self.label!r} has a reverse rate but no rate. Give the rate of the forward jumps.'
361
+ raise ValidationError(error_msg)
362
+ reverse = self.reverse_rate
363
+ if reverse is not None and not callable(reverse) and not isinstance(reverse, int | float):
364
+ error_msg = f'The reverse rate {reverse!r} of {self.label!r} is neither a number nor a function.'
365
+ raise ValidationError(error_msg)
366
+ if isinstance(self.offset, bool) or not isinstance(self.offset, int):
367
+ error_msg = f'The offset of {self.label!r} is {self.offset!r}. Give a whole number of members.'
368
+ raise ValidationError(error_msg)
369
+ if self.boundary not in BOUNDARIES:
370
+ error_msg = f'Unknown boundary {self.boundary!r} of {self.label!r}. Use one of {", ".join(BOUNDARIES)}.'
371
+ raise ValidationError(error_msg)
372
+ if self.offset and (self.form != 'symbolic' or self.source != self.target):
373
+ error_msg = (
374
+ f'{self.label!r} transfers along the order of one group by an offset. Give the group as both source '
375
+ 'and target, and `form="symbolic"`.'
376
+ )
377
+ raise ValidationError(error_msg)
378
+
379
+ def _check_schedule(self) -> None:
380
+ """Raise an error for an unknown schedule, actor, or removal, or partners the schedule cannot draw."""
381
+ for name, value, variants in (
382
+ ('schedule', self.schedule, SCHEDULES),
383
+ ('actor', self.actor, ACTORS),
384
+ ('removal', self.remove, (*REMOVALS, None)),
385
+ ):
386
+ if value not in variants:
387
+ error_msg = f'Unknown {name} {value!r} of {self.label!r}. Use one of {", ".join(map(str, variants))}.'
388
+ raise ValidationError(error_msg)
389
+ own = self.pairing == 'members' and self.source == self.target
390
+ if self.schedule == 'member' and self.pairing in {'members', 'pairs', 'neighbor-pairs'} and not own:
391
+ error_msg = (
392
+ f'The actors of {self.label!r} draw partners by `random`, `neighbors`, `cell`, or `site`, or pair '
393
+ 'with themselves by `members` within one group.'
394
+ )
395
+ raise ValidationError(error_msg)
396
+ if self.pairing == 'site' and self.actor != 'source':
397
+ error_msg = f'The sources of {self.label!r} move amounts into a field. Give `actor="source"`.'
398
+ raise ValidationError(error_msg)
399
+ if self.schedule == 'member' and self.form != 'agent':
400
+ error_msg = f'The schedule `member` of {self.label!r} runs agent rules. Use `form="agent"`.'
401
+ raise ValidationError(error_msg)
402
+ if isinstance(self.pairing, PartnerSpec) and self.schedule == 'member' and self.pairing.capacity is not None:
403
+ error_msg = (
404
+ f'The partners of {self.label!r} have a capacity of one step, but under the schedule `member` every '
405
+ 'actor draws alone. Use the schedule `random-sequential`, or no capacity.'
406
+ )
407
+ raise ValidationError(error_msg)
408
+ if isinstance(self.pairing, PartnerSpec) and self.partners is not None:
409
+ error_msg = f'{self.label!r} draws partners by a `PartnerSpec`. Give its capacity, not `partners`.'
410
+ raise ValidationError(error_msg)
411
+ if self.partners is not None and (isinstance(self.partners, bool) or not self.partners >= 1):
412
+ error_msg = f'The partners of {self.label!r} are {self.partners!r}. Give a positive whole number, or None.'
413
+ raise ValidationError(error_msg)
414
+
415
+ def _get_owner(self) -> str:
416
+ """Return the path of the element or group the source and target roles both bind, or the empty string."""
417
+ roles = self._get_specs()
418
+ bound = all(isinstance(roles.get(self._get_role(role)), RoleSpec) for role in ('source', 'target'))
419
+ return self.source if bound and self.source == self.target else ''
420
+
421
+ def _get_holders(self, namespace: SimpleNamespace) -> list[tuple[SimpleNamespace, SimpleNamespace]]:
422
+ """Return the namespaces of the source and the target of every pair the symbolic form transfers between."""
423
+ return [(getattr(namespace, self._get_role('source')), getattr(namespace, self._get_role('target')))]
424
+
425
+ def _shift(self, holder: SimpleNamespace) -> SimpleNamespace:
426
+ """Return the namespace of a group with every symbol read at the member the offset names."""
427
+ if not self.offset:
428
+ return holder
429
+ return SimpleNamespace(
430
+ **{
431
+ name: (
432
+ shift_member(value, self.offset, boundary=self.boundary) if isinstance(value, Expression) else value
433
+ )
434
+ for name, value in vars(holder).items()
435
+ },
436
+ )
437
+
438
+ @staticmethod
439
+ def _get_holder(namespace: SimpleNamespace, end: str, own: SimpleNamespace) -> object:
440
+ """Return the symbol of a leg end, the state of the role it names or the state of its own side."""
441
+ role, _, state = end.rpartition('.')
442
+ return getattr(getattr(namespace, role) if role else own, state)
443
+
444
+ def _get_law(
445
+ self,
446
+ namespace: SimpleNamespace,
447
+ leg: NamedLeg,
448
+ rate: Amount | None,
449
+ reverse: bool,
450
+ ) -> TransferLaw:
451
+ """Return the transfer law of one leg of a pair, forward or back, reported under its flow name."""
452
+ state, into, amount, flow = leg
453
+ owner = self._get_owner() if flow else ''
454
+ held = (
455
+ state
456
+ if isinstance(state, Source)
457
+ else self._get_holder(namespace, state, self._get_member(namespace, 'source'))
458
+ )
459
+ sink = (
460
+ into
461
+ if isinstance(into, Sink)
462
+ else self._get_holder(namespace, str(into), self._get_member(namespace, 'target'))
463
+ )
464
+ value = amount(namespace) if callable(amount) else amount
465
+ if reverse:
466
+ held, sink = (
467
+ Source(sink.label) if isinstance(sink, Sink) else sink,
468
+ Sink(held.label) if isinstance(held, Source) else held,
469
+ )
470
+ flow = f'{flow}_reverse' if flow else ''
471
+ if rate is None:
472
+ if self.guard is not None:
473
+ value = where(self.guard(namespace), value, 0)
474
+ return TransferLaw(held, sink, value, label=flow, owner=owner)
475
+ jumps = rate(namespace) if callable(rate) else rate
476
+ if self.guard is not None:
477
+ jumps = where(self.guard(namespace), jumps, 0)
478
+ return TransferLaw(held, sink, value, jumps, label=flow, owner=owner)
479
+
480
+ def _get_transfer_laws(self, namespace: SimpleNamespace) -> list[BaseLaw]:
481
+ """Return the transfer laws of every leg of every pair, forward and back, of the symbolic form."""
482
+ laws: list[BaseLaw] = []
483
+ for source, target in self._get_holders(namespace):
484
+ paired = SimpleNamespace(
485
+ **{**vars(namespace), self._get_role('source'): source, self._get_role('target'): self._shift(target)},
486
+ )
487
+ laws += [self._get_law(paired, leg, self.rate, False) for leg in self._get_legs()]
488
+ if self.reverse_rate is not None:
489
+ laws += [self._get_law(paired, leg, self.reverse_rate, True) for leg in self._get_legs()]
490
+ return laws
491
+
492
+ def _get_pairing(self) -> MatchLaw:
493
+ """Return the law of the pairs of the pairing, whose capacity for a function is `partners`, or 1 without it."""
494
+ pairing = self.pairing
495
+ spec = NAMED_PARTNERS[pairing] if isinstance(pairing, str) else pairing
496
+ return MatchLaw(self.source, self.target, spec, capacity=self.partners or 1)
497
+
498
+ def _get_pairs(self, model: ModelViewProtocol) -> list[tuple[AgentViewProtocol, AgentViewProtocol]]:
499
+ """Return the pairs of source and target agents of one step in random order."""
500
+ sources = model.agents(self._get_role('source'))
501
+ targets = sources if self.source == self.target else model.agents(self._get_role('target'))
502
+ if self.fallback is not None and not any(target.alive for target in targets):
503
+ targets = model.agents(self._get_role('fallback'))
504
+ pairs: list[tuple[AgentViewProtocol, AgentViewProtocol]] = []
505
+ if self.pairing == 'members':
506
+ pairs = list(zip(sources, targets, strict=False))
507
+ else:
508
+ pairs = cast(
509
+ list[tuple[AgentViewProtocol, AgentViewProtocol]],
510
+ self._get_pairing().get_pairs(sources, targets, model.rng),
511
+ )
512
+ return [pairs[int(index)] for index in model.rng.permutation(len(pairs))]
513
+
514
+ def _evaluate(
515
+ self,
516
+ amount: Amount,
517
+ source: AgentViewProtocol,
518
+ target: object,
519
+ model: ModelViewProtocol,
520
+ ) -> float:
521
+ """Return the amount of a leg between two agents as a number."""
522
+ value = amount(source, target, model) if callable(amount) else amount
523
+ if not isinstance(value, int | float | np.floating | np.integer):
524
+ error_msg = f'An amount of {self.label!r} between agents is {value!r}. Return a number.'
525
+ raise ValidationError(error_msg)
526
+ return float(value)
527
+
528
+ def _transfer_pair(self, source: AgentViewProtocol, target: AgentViewProtocol, model: ModelViewProtocol) -> None:
529
+ """Transfer between two living agents, and remove the member of the pair that a removal names."""
530
+ if source.alive and target.alive and self.transfer(source, target, model) and self.remove is not None:
531
+ (source if self.remove == 'source' else target).remove()
532
+
533
+ def _deposit(self, agent: AgentViewProtocol, model: ModelViewProtocol) -> None:
534
+ """Move the amounts of every leg from an agent into the site of the target field at its cell or node."""
535
+ cell = agent.location_key
536
+ if not agent.alive or (self.guard is not None and not self.guard(agent, cell, model)):
537
+ return
538
+ legs = self._get_legs()
539
+ amounts = [self._evaluate(amount, agent, cell, model) for _, _, amount, _ in legs]
540
+ field = self._get_role('target')
541
+ for (state, into, _, _), amount in zip(legs, amounts, strict=True):
542
+ if isinstance(state, str):
543
+ setattr(agent, state, getattr(agent, state) - amount)
544
+ if isinstance(into, str):
545
+ model.deposit(f'{field}.{into}', cell, amount)
546
+
547
+ def _get_partners(self, agent: AgentViewProtocol, model: ModelViewProtocol) -> list[AgentViewProtocol]:
548
+ """Return the partners of an actor by the pairing, or the number of them drawn at random."""
549
+ if self.pairing == 'members':
550
+ return [agent]
551
+ role = self._get_role('source' if self.actor == 'target' else 'target')
552
+ if callable(self.pairing) or isinstance(self.pairing, PartnerSpec):
553
+ others = [other for other in model.agents(role) if other is not agent]
554
+ pairs = self._get_pairing().get_pairs([agent], others, model.rng)
555
+ return [cast(AgentViewProtocol, partner) for _, partner in pairs]
556
+ if self.pairing == 'cell':
557
+ groups = set(model.groups(role))
558
+ others = [other for other in agent.agents_here() if other.group in groups]
559
+ else:
560
+ others = [other for other in model.agents(role) if other is not agent]
561
+ if self.pairing == 'neighbors':
562
+ cells = set(agent.neighbor_cells())
563
+ others = [other for other in others if other.location_key in cells]
564
+ elif self.pairing == 'random' and others:
565
+ others = [others[int(model.rng.integers(len(others)))]]
566
+ if self.partners is None or len(others) <= self.partners:
567
+ return others
568
+ return [others[int(index)] for index in model.rng.permutation(len(others))[: self.partners]]
569
+
570
+ def _transfer_member(self, agent: AgentViewProtocol, model: ModelViewProtocol) -> None:
571
+ """Transfer between one actor and its partners, in the activation of the actor."""
572
+ if self.pairing == 'site':
573
+ self._deposit(agent, model)
574
+ return
575
+ for partner in self._get_partners(agent, model):
576
+ if agent.alive:
577
+ pair = (partner, agent) if self.actor == 'target' else (agent, partner)
578
+ self._transfer_pair(*pair, model)
579
+
580
+ def _transfer_pairs(self, model: ModelViewProtocol) -> None:
581
+ """Transfer between every pair of agents of one step, or into the sites of the source agents."""
582
+ if self.pairing == 'site':
583
+ sources = model.agents(self._get_role('source'))
584
+ for index in model.rng.permutation(len(sources)):
585
+ self._deposit(sources[int(index)], model)
586
+ return
587
+ for source, target in self._get_pairs(model):
588
+ self._transfer_pair(source, target, model)
589
+
590
+ def _get_laws(self, namespace: SimpleNamespace) -> list[BaseLaw]:
591
+ """Return the transfer laws of the symbolic form, or the rule of the agent form.
592
+
593
+ Args:
594
+ namespace:
595
+ The namespace of the symbols the laws can use.
596
+
597
+ Returns:
598
+ laws:
599
+ A transfer law per leg, or the rule that transfers between the pairs of agents.
600
+ """
601
+ if self.form == 'agent' and self.schedule == 'member':
602
+ return [RuleLaw(self._transfer_member, phase=self.phase, members=self._get_role(self.actor))]
603
+ if self.form == 'agent':
604
+ return [RuleLaw(self._transfer_pairs, phase=self.phase)]
605
+ return self._get_transfer_laws(namespace)
606
+
607
+ def transfer(self, source: AgentViewProtocol, target: AgentViewProtocol, model: ModelViewProtocol) -> bool:
608
+ """Move the amounts of every leg from one source agent to one target agent, when the guard holds.
609
+
610
+ Args:
611
+ source:
612
+ The agent the amounts leave.
613
+
614
+ target:
615
+ The agent the amounts enter.
616
+
617
+ model:
618
+ The model view of the rule.
619
+
620
+ Returns:
621
+ transferred:
622
+ Whether the guard held, so the amounts moved.
623
+
624
+ Raises:
625
+ ValidationError:
626
+ An amount function returns something other than a number.
627
+
628
+ SimulationError:
629
+ A leg end names the state of a referenced member, and the reference state names no member.
630
+ """
631
+ if self.guard is not None and not self.guard(source, target, model):
632
+ return False
633
+ legs = self._get_legs()
634
+ amounts = [self._evaluate(amount, source, target, model) for _, _, amount, _ in legs]
635
+ if self.settlement is not None:
636
+ self.settlement(source, target, amounts, model)
637
+ return True
638
+ ends = [
639
+ (
640
+ self._get_end(source, state) if isinstance(state, str) else None,
641
+ self._get_end(target, into) if isinstance(into, str) else None,
642
+ )
643
+ for state, into, _, _ in legs
644
+ ]
645
+ for (taken, given), amount in zip(ends, amounts, strict=True):
646
+ if taken is not None:
647
+ holder, name = taken
648
+ setattr(holder, name, getattr(holder, name) - amount)
649
+ if given is not None:
650
+ holder, name = given
651
+ setattr(holder, name, getattr(holder, name) + amount)
652
+ return True
653
+
654
+ def _get_end(self, agent: AgentViewProtocol, name: str) -> tuple[AgentViewProtocol, str]:
655
+ """Return the agent that holds the state a leg end names and the name of the state.
656
+
657
+ A name `'<reference>.<state>'` names the state of the member that the reference state of the agent names.
658
+ """
659
+ reference, _, state = name.rpartition('.')
660
+ if not reference:
661
+ return agent, name
662
+ holder = agent.referenced(reference)
663
+ if holder is None:
664
+ error_msg = (
665
+ f'A leg of {self.label!r} moves {name!r}, but the state {reference!r} of agent {agent.id} names no '
666
+ 'member.'
667
+ )
668
+ raise SimulationError(error_msg)
669
+ return holder, state