scikit-complexity 0.2.0__py3-none-any.whl

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  1. scikit_complexity-0.2.0.dist-info/METADATA +317 -0
  2. scikit_complexity-0.2.0.dist-info/RECORD +1748 -0
  3. scikit_complexity-0.2.0.dist-info/WHEEL +4 -0
  4. scikit_complexity-0.2.0.dist-info/entry_points.txt +4 -0
  5. scikit_complexity-0.2.0.dist-info/licenses/LICENSE +21 -0
  6. skcomplex/__init__.py +1 -0
  7. skcomplex/analysis/__init__.py +101 -0
  8. skcomplex/analysis/_alignment.py +263 -0
  9. skcomplex/analysis/_automata.py +658 -0
  10. skcomplex/analysis/_base.py +841 -0
  11. skcomplex/analysis/_clusters.py +298 -0
  12. skcomplex/analysis/_coarse_grain.py +183 -0
  13. skcomplex/analysis/_collapse.py +318 -0
  14. skcomplex/analysis/_complexity.py +129 -0
  15. skcomplex/analysis/_computational_mechanics.py +220 -0
  16. skcomplex/analysis/_correlation.py +364 -0
  17. skcomplex/analysis/_defects.py +111 -0
  18. skcomplex/analysis/_discovery.py +101 -0
  19. skcomplex/analysis/_displacement.py +135 -0
  20. skcomplex/analysis/_distribution.py +327 -0
  21. skcomplex/analysis/_domains.py +220 -0
  22. skcomplex/analysis/_embedding.py +235 -0
  23. skcomplex/analysis/_emergence.py +503 -0
  24. skcomplex/analysis/_entropy.py +425 -0
  25. skcomplex/analysis/_ergodicity.py +228 -0
  26. skcomplex/analysis/_events.py +301 -0
  27. skcomplex/analysis/_fit.py +368 -0
  28. skcomplex/analysis/_groups.py +205 -0
  29. skcomplex/analysis/_information.py +488 -0
  30. skcomplex/analysis/_invariants.py +409 -0
  31. skcomplex/analysis/_irreversibility.py +421 -0
  32. skcomplex/analysis/_kramers_moyal.py +104 -0
  33. skcomplex/analysis/_large_deviations.py +378 -0
  34. skcomplex/analysis/_linearization.py +231 -0
  35. skcomplex/analysis/_local_information.py +166 -0
  36. skcomplex/analysis/_loops.py +394 -0
  37. skcomplex/analysis/_lyapunov.py +342 -0
  38. skcomplex/analysis/_markov.py +303 -0
  39. skcomplex/analysis/_mode_decomposition.py +209 -0
  40. skcomplex/analysis/_motifs.py +239 -0
  41. skcomplex/analysis/_neighbors.py +303 -0
  42. skcomplex/analysis/_networks.py +286 -0
  43. skcomplex/analysis/_operator.py +312 -0
  44. skcomplex/analysis/_partial_information.py +118 -0
  45. skcomplex/analysis/_passage.py +244 -0
  46. skcomplex/analysis/_recurrence.py +202 -0
  47. skcomplex/analysis/_reservoirs.py +387 -0
  48. skcomplex/analysis/_rolling.py +168 -0
  49. skcomplex/analysis/_scaling.py +370 -0
  50. skcomplex/analysis/_sections.py +225 -0
  51. skcomplex/analysis/_signatures.py +250 -0
  52. skcomplex/analysis/_sparse_identification.py +398 -0
  53. skcomplex/analysis/_spectrum.py +164 -0
  54. skcomplex/analysis/_stability.py +547 -0
  55. skcomplex/analysis/_surrogates.py +127 -0
  56. skcomplex/analysis/_symbolic.py +639 -0
  57. skcomplex/analysis/types.py +43 -0
  58. skcomplex/base.py +159 -0
  59. skcomplex/core/__init__.py +1 -0
  60. skcomplex/core/base.py +150 -0
  61. skcomplex/core/elements/__init__.py +21 -0
  62. skcomplex/core/elements/_base.py +84 -0
  63. skcomplex/core/elements/_compartment.py +52 -0
  64. skcomplex/core/elements/_density.py +52 -0
  65. skcomplex/core/elements/_element.py +80 -0
  66. skcomplex/core/elements/_field.py +192 -0
  67. skcomplex/core/elements/_group.py +241 -0
  68. skcomplex/core/elements/_lattice.py +115 -0
  69. skcomplex/core/elements/_point.py +66 -0
  70. skcomplex/core/interactions/__init__.py +89 -0
  71. skcomplex/core/interactions/_advection.py +134 -0
  72. skcomplex/core/interactions/_base.py +361 -0
  73. skcomplex/core/interactions/_cascade.py +195 -0
  74. skcomplex/core/interactions/_choice.py +320 -0
  75. skcomplex/core/interactions/_conservation.py +164 -0
  76. skcomplex/core/interactions/_coupling.py +741 -0
  77. skcomplex/core/interactions/_crossing.py +136 -0
  78. skcomplex/core/interactions/_diffusion.py +99 -0
  79. skcomplex/core/interactions/_encounter.py +201 -0
  80. skcomplex/core/interactions/_euler_lagrange.py +183 -0
  81. skcomplex/core/interactions/_evolution.py +520 -0
  82. skcomplex/core/interactions/_feedback.py +79 -0
  83. skcomplex/core/interactions/_gradient.py +293 -0
  84. skcomplex/core/interactions/_grouping.py +399 -0
  85. skcomplex/core/interactions/_hamiltonian.py +191 -0
  86. skcomplex/core/interactions/_hyperedge.py +96 -0
  87. skcomplex/core/interactions/_imitation.py +357 -0
  88. skcomplex/core/interactions/_impulse.py +133 -0
  89. skcomplex/core/interactions/_interaction.py +58 -0
  90. skcomplex/core/interactions/_jump.py +201 -0
  91. skcomplex/core/interactions/_life_cycle.py +424 -0
  92. skcomplex/core/interactions/_local_rule.py +134 -0
  93. skcomplex/core/interactions/_map.py +239 -0
  94. skcomplex/core/interactions/_matching.py +701 -0
  95. skcomplex/core/interactions/_movement.py +377 -0
  96. skcomplex/core/interactions/_neighbor.py +88 -0
  97. skcomplex/core/interactions/_optimization.py +206 -0
  98. skcomplex/core/interactions/_pair.py +82 -0
  99. skcomplex/core/interactions/_pair_coupling.py +169 -0
  100. skcomplex/core/interactions/_rate.py +240 -0
  101. skcomplex/core/interactions/_reaction.py +466 -0
  102. skcomplex/core/interactions/_reinforcement.py +226 -0
  103. skcomplex/core/interactions/_relaxation.py +103 -0
  104. skcomplex/core/interactions/_sampling.py +177 -0
  105. skcomplex/core/interactions/_satisfiability.py +145 -0
  106. skcomplex/core/interactions/_sign_adjustment.py +222 -0
  107. skcomplex/core/interactions/_topology.py +215 -0
  108. skcomplex/core/interactions/_training.py +184 -0
  109. skcomplex/core/interactions/_transfer.py +669 -0
  110. skcomplex/core/interactions/_transition.py +427 -0
  111. skcomplex/core/laws/__init__.py +60 -0
  112. skcomplex/core/laws/_base.py +194 -0
  113. skcomplex/core/laws/_bilinear.py +91 -0
  114. skcomplex/core/laws/_boundary.py +59 -0
  115. skcomplex/core/laws/_cascade.py +79 -0
  116. skcomplex/core/laws/_crossing.py +87 -0
  117. skcomplex/core/laws/_dissipator.py +79 -0
  118. skcomplex/core/laws/_drive.py +56 -0
  119. skcomplex/core/laws/_emission.py +81 -0
  120. skcomplex/core/laws/_encounter.py +96 -0
  121. skcomplex/core/laws/_equation.py +105 -0
  122. skcomplex/core/laws/_extremal.py +94 -0
  123. skcomplex/core/laws/_flux.py +108 -0
  124. skcomplex/core/laws/_fractional_noise.py +65 -0
  125. skcomplex/core/laws/_generator.py +66 -0
  126. skcomplex/core/laws/_gradient_step.py +89 -0
  127. skcomplex/core/laws/_jump.py +137 -0
  128. skcomplex/core/laws/_local_rule.py +92 -0
  129. skcomplex/core/laws/_match.py +321 -0
  130. skcomplex/core/laws/_noise.py +125 -0
  131. skcomplex/core/laws/_rate.py +82 -0
  132. skcomplex/core/laws/_rule.py +82 -0
  133. skcomplex/core/laws/_sample.py +65 -0
  134. skcomplex/core/laws/_transfer.py +165 -0
  135. skcomplex/core/laws/_transition.py +77 -0
  136. skcomplex/core/laws/_update.py +121 -0
  137. skcomplex/core/laws/utils/__init__.py +142 -0
  138. skcomplex/core/laws/utils/_agents.py +127 -0
  139. skcomplex/core/laws/utils/_components.py +63 -0
  140. skcomplex/core/laws/utils/_conditions.py +198 -0
  141. skcomplex/core/laws/utils/_contractions.py +74 -0
  142. skcomplex/core/laws/utils/_delays.py +170 -0
  143. skcomplex/core/laws/utils/_history.py +167 -0
  144. skcomplex/core/laws/utils/_local_operators.py +68 -0
  145. skcomplex/core/laws/utils/_lookups.py +40 -0
  146. skcomplex/core/laws/utils/_moments.py +122 -0
  147. skcomplex/core/laws/utils/_operators.py +237 -0
  148. skcomplex/core/laws/utils/_phase.py +126 -0
  149. skcomplex/core/laws/utils/_pointwise.py +160 -0
  150. skcomplex/core/laws/utils/_reductions.py +942 -0
  151. skcomplex/core/laws/utils/_signals.py +214 -0
  152. skcomplex/core/laws/utils/_tables.py +4 -0
  153. skcomplex/core/laws/utils/_tensors.py +235 -0
  154. skcomplex/core/spaces/__init__.py +52 -0
  155. skcomplex/core/spaces/_adjacency.py +34 -0
  156. skcomplex/core/spaces/_base.py +218 -0
  157. skcomplex/core/spaces/_box.py +41 -0
  158. skcomplex/core/spaces/_cayley.py +352 -0
  159. skcomplex/core/spaces/_cone.py +65 -0
  160. skcomplex/core/spaces/_continuous.py +93 -0
  161. skcomplex/core/spaces/_continuous_time.py +27 -0
  162. skcomplex/core/spaces/_discrete_time.py +53 -0
  163. skcomplex/core/spaces/_generator.py +51 -0
  164. skcomplex/core/spaces/_lattice.py +194 -0
  165. skcomplex/core/spaces/_lattice_neighborhood.py +50 -0
  166. skcomplex/core/spaces/_memory.py +45 -0
  167. skcomplex/core/spaces/_mesh.py +71 -0
  168. skcomplex/core/spaces/_moore.py +49 -0
  169. skcomplex/core/spaces/_nearest.py +41 -0
  170. skcomplex/core/spaces/_network.py +256 -0
  171. skcomplex/core/spaces/_phase.py +136 -0
  172. skcomplex/core/spaces/_radius.py +40 -0
  173. skcomplex/core/spaces/_static_time.py +34 -0
  174. skcomplex/core/spaces/_triangular.py +37 -0
  175. skcomplex/core/spaces/_von_neumann.py +51 -0
  176. skcomplex/core/specs/__init__.py +25 -0
  177. skcomplex/core/specs/_census_record_spec.py +72 -0
  178. skcomplex/core/specs/_census_spec.py +40 -0
  179. skcomplex/core/specs/_compiled_agents_spec.py +62 -0
  180. skcomplex/core/specs/_compiled_element_spec.py +59 -0
  181. skcomplex/core/specs/_compiled_interaction_spec.py +33 -0
  182. skcomplex/core/specs/_lattice_context_spec.py +40 -0
  183. skcomplex/core/specs/_lattice_state_spec.py +49 -0
  184. skcomplex/core/specs/_node_spec.py +64 -0
  185. skcomplex/core/specs/_operator_view_spec.py +135 -0
  186. skcomplex/core/specs/_scenario_spec.py +45 -0
  187. skcomplex/core/specs/_subsystem_spec.py +24 -0
  188. skcomplex/core/system.py +140 -0
  189. skcomplex/core/types.py +249 -0
  190. skcomplex/engine/__init__.py +5 -0
  191. skcomplex/engine/_utils.py +278 -0
  192. skcomplex/engine/backends/__init__.py +13 -0
  193. skcomplex/engine/backends/_base.py +329 -0
  194. skcomplex/engine/backends/_jax.py +285 -0
  195. skcomplex/engine/backends/_numba.py +601 -0
  196. skcomplex/engine/backends/_numba_components.py +67 -0
  197. skcomplex/engine/backends/_numba_loops.py +163 -0
  198. skcomplex/engine/backends/_numba_neighbours.py +435 -0
  199. skcomplex/engine/backends/_numba_printer.py +1023 -0
  200. skcomplex/engine/backends/_numba_stencils.py +66 -0
  201. skcomplex/engine/backends/_numpy.py +215 -0
  202. skcomplex/engine/compile/__init__.py +27 -0
  203. skcomplex/engine/compile/_base.py +582 -0
  204. skcomplex/engine/compile/_bound_renewal_spec.py +47 -0
  205. skcomplex/engine/compile/_compilation.py +351 -0
  206. skcomplex/engine/compile/_compile.py +100 -0
  207. skcomplex/engine/compile/_complex.py +216 -0
  208. skcomplex/engine/compile/_draw_lowering.py +373 -0
  209. skcomplex/engine/compile/_field_lowering.py +1668 -0
  210. skcomplex/engine/compile/_flows.py +691 -0
  211. skcomplex/engine/compile/_forms.py +48 -0
  212. skcomplex/engine/compile/_laws.py +42 -0
  213. skcomplex/engine/compile/_learning_compiler.py +481 -0
  214. skcomplex/engine/compile/_member_reductions.py +206 -0
  215. skcomplex/engine/compile/_members.py +244 -0
  216. skcomplex/engine/compile/_observables.py +940 -0
  217. skcomplex/engine/compile/_observer.py +185 -0
  218. skcomplex/engine/compile/_pass_compiler.py +1534 -0
  219. skcomplex/engine/compile/_probe.py +78 -0
  220. skcomplex/engine/compile/_renewal_law.py +70 -0
  221. skcomplex/engine/compile/passes/__init__.py +34 -0
  222. skcomplex/engine/compile/passes/_agents.py +111 -0
  223. skcomplex/engine/compile/passes/_agents_problem.py +143 -0
  224. skcomplex/engine/compile/passes/_census.py +808 -0
  225. skcomplex/engine/compile/passes/_check_fractional_noise.py +107 -0
  226. skcomplex/engine/compile/passes/_collect.py +31 -0
  227. skcomplex/engine/compile/passes/_compile_encounters.py +301 -0
  228. skcomplex/engine/compile/passes/_complex.py +198 -0
  229. skcomplex/engine/compile/passes/_conserved_noise.py +224 -0
  230. skcomplex/engine/compile/passes/_core.py +116 -0
  231. skcomplex/engine/compile/passes/_declare_renewals.py +84 -0
  232. skcomplex/engine/compile/passes/_draws.py +29 -0
  233. skcomplex/engine/compile/passes/_encounter_functions.py +60 -0
  234. skcomplex/engine/compile/passes/_encounter_jacobian.py +25 -0
  235. skcomplex/engine/compile/passes/_encounter_problem.py +32 -0
  236. skcomplex/engine/compile/passes/_events.py +204 -0
  237. skcomplex/engine/compile/passes/_expand_flows.py +32 -0
  238. skcomplex/engine/compile/passes/_field_functions.py +647 -0
  239. skcomplex/engine/compile/passes/_field_jacobian.py +38 -0
  240. skcomplex/engine/compile/passes/_field_problem.py +106 -0
  241. skcomplex/engine/compile/passes/_flatten.py +339 -0
  242. skcomplex/engine/compile/passes/_flows_problem.py +29 -0
  243. skcomplex/engine/compile/passes/_form.py +82 -0
  244. skcomplex/engine/compile/passes/_fractional_form.py +172 -0
  245. skcomplex/engine/compile/passes/_fractional_problem.py +91 -0
  246. skcomplex/engine/compile/passes/_functions.py +485 -0
  247. skcomplex/engine/compile/passes/_hilbert_space_error.py +10 -0
  248. skcomplex/engine/compile/passes/_hyperedges.py +598 -0
  249. skcomplex/engine/compile/passes/_jacobian.py +38 -0
  250. skcomplex/engine/compile/passes/_kernels.py +407 -0
  251. skcomplex/engine/compile/passes/_lattices.py +818 -0
  252. skcomplex/engine/compile/passes/_layout.py +667 -0
  253. skcomplex/engine/compile/passes/_lower_fields.py +225 -0
  254. skcomplex/engine/compile/passes/_lower_flows.py +28 -0
  255. skcomplex/engine/compile/passes/_markov.py +329 -0
  256. skcomplex/engine/compile/passes/_mask_requests.py +121 -0
  257. skcomplex/engine/compile/passes/_members.py +30 -0
  258. skcomplex/engine/compile/passes/_noise.py +196 -0
  259. skcomplex/engine/compile/passes/_operator_compiler.py +843 -0
  260. skcomplex/engine/compile/passes/_orders.py +409 -0
  261. skcomplex/engine/compile/passes/_owners.py +90 -0
  262. skcomplex/engine/compile/passes/_particles.py +69 -0
  263. skcomplex/engine/compile/passes/_plan.py +130 -0
  264. skcomplex/engine/compile/passes/_problem.py +802 -0
  265. skcomplex/engine/compile/passes/_reduction_lowering.py +1193 -0
  266. skcomplex/engine/compile/passes/_reductions.py +84 -0
  267. skcomplex/engine/compile/passes/_renewal_problem.py +357 -0
  268. skcomplex/engine/compile/passes/_request_jumps.py +51 -0
  269. skcomplex/engine/compile/passes/_residences.py +140 -0
  270. skcomplex/engine/compile/passes/_rows.py +162 -0
  271. skcomplex/engine/compile/passes/_set_renewals_apart.py +29 -0
  272. skcomplex/engine/compile/passes/_set_rules_apart.py +28 -0
  273. skcomplex/engine/compile/passes/_specs.py +1317 -0
  274. skcomplex/engine/compile/passes/_split_requests.py +44 -0
  275. skcomplex/engine/compile/passes/_topology_functions.py +265 -0
  276. skcomplex/engine/compile/passes/_topology_problem.py +27 -0
  277. skcomplex/engine/compile/passes/_towards.py +66 -0
  278. skcomplex/engine/compile/passes/_unpack_matches.py +29 -0
  279. skcomplex/engine/compile/passes/_unpack_renewals.py +41 -0
  280. skcomplex/engine/problems/__init__.py +61 -0
  281. skcomplex/engine/problems/_base.py +150 -0
  282. skcomplex/engine/problems/_base_problem_spec.py +153 -0
  283. skcomplex/engine/problems/_block_spec.py +48 -0
  284. skcomplex/engine/problems/_born_spec.py +24 -0
  285. skcomplex/engine/problems/_cascade_kernel.py +134 -0
  286. skcomplex/engine/problems/_collision_kernel.py +147 -0
  287. skcomplex/engine/problems/_compiled_delay_spec.py +21 -0
  288. skcomplex/engine/problems/_compiled_request_spec.py +46 -0
  289. skcomplex/engine/problems/_control_problem_spec.py +90 -0
  290. skcomplex/engine/problems/_declarations_spec.py +126 -0
  291. skcomplex/engine/problems/_delayed_state_spec.py +50 -0
  292. skcomplex/engine/problems/_diffusive_limit_spec.py +50 -0
  293. skcomplex/engine/problems/_draw_kernel.py +128 -0
  294. skcomplex/engine/problems/_drive_kernel.py +65 -0
  295. skcomplex/engine/problems/_dynamics_spec.py +28 -0
  296. skcomplex/engine/problems/_edge_row_search.py +78 -0
  297. skcomplex/engine/problems/_edge_search.py +64 -0
  298. skcomplex/engine/problems/_encounter_kernel.py +200 -0
  299. skcomplex/engine/problems/_event_kernel.py +70 -0
  300. skcomplex/engine/problems/_expression_printer.py +410 -0
  301. skcomplex/engine/problems/_extremal_kernel.py +125 -0
  302. skcomplex/engine/problems/_field_operator_kernel.py +105 -0
  303. skcomplex/engine/problems/_finite_volume_kernel.py +423 -0
  304. skcomplex/engine/problems/_flow_term_spec.py +45 -0
  305. skcomplex/engine/problems/_frame_spec.py +105 -0
  306. skcomplex/engine/problems/_jacobian_kernel.py +575 -0
  307. skcomplex/engine/problems/_kernel_spec.py +130 -0
  308. skcomplex/engine/problems/_kinetic_problem_spec.py +23 -0
  309. skcomplex/engine/problems/_law_kernel.py +604 -0
  310. skcomplex/engine/problems/_learning_problem_spec.py +67 -0
  311. skcomplex/engine/problems/_linear_term_spec.py +50 -0
  312. skcomplex/engine/problems/_loop_term_spec.py +44 -0
  313. skcomplex/engine/problems/_lowered_kernels_spec.py +59 -0
  314. skcomplex/engine/problems/_markov_kernel.py +68 -0
  315. skcomplex/engine/problems/_metric_search.py +155 -0
  316. skcomplex/engine/problems/_monte_carlo_kernel.py +213 -0
  317. skcomplex/engine/problems/_neighborhood_kernel.py +594 -0
  318. skcomplex/engine/problems/_noise_term_spec.py +26 -0
  319. skcomplex/engine/problems/_observed_spec.py +22 -0
  320. skcomplex/engine/problems/_operator_kernel.py +102 -0
  321. skcomplex/engine/problems/_operator_lowering.py +323 -0
  322. skcomplex/engine/problems/_operator_problem_spec.py +138 -0
  323. skcomplex/engine/problems/_output_spec.py +78 -0
  324. skcomplex/engine/problems/_pair_search.py +86 -0
  325. skcomplex/engine/problems/_partials_spec.py +27 -0
  326. skcomplex/engine/problems/_partition_spec.py +39 -0
  327. skcomplex/engine/problems/_printed_spec.py +24 -0
  328. skcomplex/engine/problems/_problem_functions_spec.py +102 -0
  329. skcomplex/engine/problems/_problem_spec.py +365 -0
  330. skcomplex/engine/problems/_random_stream.py +49 -0
  331. skcomplex/engine/problems/_record_spec.py +22 -0
  332. skcomplex/engine/problems/_recorded_spec.py +21 -0
  333. skcomplex/engine/problems/_reduction_kernel.py +254 -0
  334. skcomplex/engine/problems/_reduction_schedule_spec.py +97 -0
  335. skcomplex/engine/problems/_reference_spec.py +114 -0
  336. skcomplex/engine/problems/_relation_spec.py +29 -0
  337. skcomplex/engine/problems/_renewal_kernel.py +250 -0
  338. skcomplex/engine/problems/_request_spec.py +27 -0
  339. skcomplex/engine/problems/_rule_kernel.py +227 -0
  340. skcomplex/engine/problems/_set_symbol_spec.py +28 -0
  341. skcomplex/engine/problems/_source_loader.py +113 -0
  342. skcomplex/engine/problems/_static_search.py +42 -0
  343. skcomplex/engine/problems/_steps.py +39 -0
  344. skcomplex/engine/problems/_sweep_spec.py +26 -0
  345. skcomplex/engine/problems/_symmetry_spec.py +29 -0
  346. skcomplex/engine/problems/_too_dense.py +8 -0
  347. skcomplex/engine/problems/_topology_kernel.py +589 -0
  348. skcomplex/engine/problems/_transfer_network.py +4 -0
  349. skcomplex/engine/problems/_transfer_network_spec.py +50 -0
  350. skcomplex/engine/problems/_transfer_state_spec.py +68 -0
  351. skcomplex/engine/runtime/__init__.py +22 -0
  352. skcomplex/engine/runtime/_as_fast_as_possible.py +17 -0
  353. skcomplex/engine/runtime/_base.py +137 -0
  354. skcomplex/engine/runtime/_conservation.py +125 -0
  355. skcomplex/engine/runtime/_invariants.py +100 -0
  356. skcomplex/engine/runtime/_real_time.py +55 -0
  357. skcomplex/engine/runtime/_recorder.py +84 -0
  358. skcomplex/engine/runtime/_simulations.py +665 -0
  359. skcomplex/engine/runtime/_trajectories.py +314 -0
  360. skcomplex/engine/solvers/__init__.py +95 -0
  361. skcomplex/engine/solvers/_base.py +372 -0
  362. skcomplex/engine/solvers/_caputo.py +194 -0
  363. skcomplex/engine/solvers/_collocation.py +334 -0
  364. skcomplex/engine/solvers/_convolution.py +155 -0
  365. skcomplex/engine/solvers/_cosimulation.py +400 -0
  366. skcomplex/engine/solvers/_crank_nicolson.py +32 -0
  367. skcomplex/engine/solvers/_defaults.py +34 -0
  368. skcomplex/engine/solvers/_etdrk4.py +86 -0
  369. skcomplex/engine/solvers/_euler_maruyama.py +161 -0
  370. skcomplex/engine/solvers/_event_locator.py +249 -0
  371. skcomplex/engine/solvers/_external.py +94 -0
  372. skcomplex/engine/solvers/_fractional_abm.py +126 -0
  373. skcomplex/engine/solvers/_fractional_euler_maruyama.py +322 -0
  374. skcomplex/engine/solvers/_gillespie.py +135 -0
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  1620. skcomplex/models/social/segregation/_resident_view.py +13 -0
  1621. skcomplex/models/social/segregation/_schelling.py +75 -0
  1622. skcomplex/models/social/spreading/__init__.py +37 -0
  1623. skcomplex/models/social/spreading/_cascades.py +118 -0
  1624. skcomplex/models/social/spreading/_exposure.py +166 -0
  1625. skcomplex/models/social/spreading/_growing_word.py +55 -0
  1626. skcomplex/models/social/spreading/_growing_word_view.py +13 -0
  1627. skcomplex/models/social/spreading/_growth.py +52 -0
  1628. skcomplex/models/social/spreading/_infective.py +55 -0
  1629. skcomplex/models/social/spreading/_listeners.py +41 -0
  1630. skcomplex/models/social/spreading/_participant.py +50 -0
  1631. skcomplex/models/social/spreading/_rumour_contacts.py +81 -0
  1632. skcomplex/models/social/spreading/_rumours.py +57 -0
  1633. skcomplex/models/social/spreading/_simplicial.py +120 -0
  1634. skcomplex/models/social/spreading/_simplicial_infection.py +64 -0
  1635. skcomplex/models/social/spreading/_threshold_activation.py +50 -0
  1636. skcomplex/models/social/spreading/_threshold_node_view.py +13 -0
  1637. skcomplex/models/social/spreading/_writing.py +86 -0
  1638. skcomplex/models/types.py +10 -0
  1639. skcomplex/specs/__init__.py +198 -0
  1640. skcomplex/specs/_accelerated_spec.py +46 -0
  1641. skcomplex/specs/_agent_snapshot_spec.py +34 -0
  1642. skcomplex/specs/_agent_state_spec.py +26 -0
  1643. skcomplex/specs/_arguments_spec.py +60 -0
  1644. skcomplex/specs/_axis_spec.py +59 -0
  1645. skcomplex/specs/_base_record_spec.py +16 -0
  1646. skcomplex/specs/_base_spec.py +73 -0
  1647. skcomplex/specs/_base_structure_spec.py +173 -0
  1648. skcomplex/specs/_batch_matching_spec.py +23 -0
  1649. skcomplex/specs/_breakpoints_spec.py +58 -0
  1650. skcomplex/specs/_call_spec.py +64 -0
  1651. skcomplex/specs/_capacity_rows_spec.py +120 -0
  1652. skcomplex/specs/_cardinality_spec.py +58 -0
  1653. skcomplex/specs/_cascade_record_spec.py +36 -0
  1654. skcomplex/specs/_clamp_spec.py +54 -0
  1655. skcomplex/specs/_clause_spec.py +42 -0
  1656. skcomplex/specs/_compiled_flow_spec.py +20 -0
  1657. skcomplex/specs/_composed_rule_spec.py +33 -0
  1658. skcomplex/specs/_continuous_matching_spec.py +48 -0
  1659. skcomplex/specs/_control_solution_spec.py +54 -0
  1660. skcomplex/specs/_control_spec.py +21 -0
  1661. skcomplex/specs/_covariance_adaptation_spec.py +25 -0
  1662. skcomplex/specs/_dataset_spec.py +85 -0
  1663. skcomplex/specs/_delay_spec.py +27 -0
  1664. skcomplex/specs/_dialect_spec.py +207 -0
  1665. skcomplex/specs/_differential_evolution_spec.py +33 -0
  1666. skcomplex/specs/_direction_spec.py +44 -0
  1667. skcomplex/specs/_draw_spec.py +273 -0
  1668. skcomplex/specs/_entry_spec.py +403 -0
  1669. skcomplex/specs/_event_record_spec.py +37 -0
  1670. skcomplex/specs/_evolution_strategy_spec.py +25 -0
  1671. skcomplex/specs/_extremal_record_spec.py +32 -0
  1672. skcomplex/specs/_fractional_rows_spec.py +33 -0
  1673. skcomplex/specs/_fractional_state_spec.py +30 -0
  1674. skcomplex/specs/_held_reduction_spec.py +29 -0
  1675. skcomplex/specs/_hilbert_spec.py +75 -0
  1676. skcomplex/specs/_hyperedge_reduction_spec.py +38 -0
  1677. skcomplex/specs/_issue_spec.py +52 -0
  1678. skcomplex/specs/_iterative_matching_spec.py +39 -0
  1679. skcomplex/specs/_jump_channels_spec.py +40 -0
  1680. skcomplex/specs/_jump_path_spec.py +29 -0
  1681. skcomplex/specs/_layer_spec.py +47 -0
  1682. skcomplex/specs/_layout_spec.py +158 -0
  1683. skcomplex/specs/_local_operator_spec.py +72 -0
  1684. skcomplex/specs/_lookup_spec.py +33 -0
  1685. skcomplex/specs/_loop_spec.py +17 -0
  1686. skcomplex/specs/_lowered_functions_spec.py +71 -0
  1687. skcomplex/specs/_match_spec.py +37 -0
  1688. skcomplex/specs/_matrix_law_spec.py +31 -0
  1689. skcomplex/specs/_move_spec.py +69 -0
  1690. skcomplex/specs/_neighbor_read_spec.py +83 -0
  1691. skcomplex/specs/_neighbor_reduction_spec.py +39 -0
  1692. skcomplex/specs/_network_rows_spec.py +124 -0
  1693. skcomplex/specs/_network_snapshot_spec.py +61 -0
  1694. skcomplex/specs/_noise_process_spec.py +41 -0
  1695. skcomplex/specs/_objective_spec.py +39 -0
  1696. skcomplex/specs/_observable_spec.py +79 -0
  1697. skcomplex/specs/_operator_spec.py +170 -0
  1698. skcomplex/specs/_orders_spec.py +16 -0
  1699. skcomplex/specs/_outer_totalistic_spec.py +38 -0
  1700. skcomplex/specs/_owners_spec.py +28 -0
  1701. skcomplex/specs/_pair_read_spec.py +38 -0
  1702. skcomplex/specs/_parameter_spec.py +81 -0
  1703. skcomplex/specs/_parameters_spec.py +26 -0
  1704. skcomplex/specs/_particle_swarm_spec.py +33 -0
  1705. skcomplex/specs/_partner_spec.py +98 -0
  1706. skcomplex/specs/_partner_switch_spec.py +39 -0
  1707. skcomplex/specs/_phase_spec.py +61 -0
  1708. skcomplex/specs/_phases_schedule_spec.py +59 -0
  1709. skcomplex/specs/_plan_spec.py +18 -0
  1710. skcomplex/specs/_planned_partition_spec.py +30 -0
  1711. skcomplex/specs/_queue_spec.py +46 -0
  1712. skcomplex/specs/_radius_spec.py +66 -0
  1713. skcomplex/specs/_random_search_spec.py +51 -0
  1714. skcomplex/specs/_read_spec.py +45 -0
  1715. skcomplex/specs/_reduction_spec.py +48 -0
  1716. skcomplex/specs/_renewal_record_spec.py +49 -0
  1717. skcomplex/specs/_requirement_spec.py +32 -0
  1718. skcomplex/specs/_role_spec.py +54 -0
  1719. skcomplex/specs/_run_result_spec.py +52 -0
  1720. skcomplex/specs/_run_state_spec.py +41 -0
  1721. skcomplex/specs/_sampled_draw_spec.py +32 -0
  1722. skcomplex/specs/_sampler_spec.py +57 -0
  1723. skcomplex/specs/_samples_spec.py +29 -0
  1724. skcomplex/specs/_schedule_spec.py +17 -0
  1725. skcomplex/specs/_sector_spec.py +31 -0
  1726. skcomplex/specs/_segment_spec.py +21 -0
  1727. skcomplex/specs/_series_spec.py +29 -0
  1728. skcomplex/specs/_signature_spec.py +55 -0
  1729. skcomplex/specs/_snapshots_spec.py +56 -0
  1730. skcomplex/specs/_stable_matching_spec.py +58 -0
  1731. skcomplex/specs/_state_spec.py +138 -0
  1732. skcomplex/specs/_step_spec.py +39 -0
  1733. skcomplex/specs/_structure_state_spec.py +30 -0
  1734. skcomplex/specs/_support_spec.py +76 -0
  1735. skcomplex/specs/_symmetry_spec.py +59 -0
  1736. skcomplex/specs/_table_spec.py +42 -0
  1737. skcomplex/specs/_table_values_spec.py +36 -0
  1738. skcomplex/specs/_tensor_spec.py +197 -0
  1739. skcomplex/specs/_topology_request_spec.py +97 -0
  1740. skcomplex/specs/_totalistic_spec.py +37 -0
  1741. skcomplex/specs/_unknown_spec.py +22 -0
  1742. skcomplex/specs/_validation_report_spec.py +62 -0
  1743. skcomplex/specs/_variable_spec.py +124 -0
  1744. skcomplex/specs/_visual_spec.py +30 -0
  1745. skcomplex/specs/_weight_spec.py +16 -0
  1746. skcomplex/specs/_wiener_block_spec.py +31 -0
  1747. skcomplex/specs/_wiener_process_spec.py +54 -0
  1748. skcomplex/types.py +140 -0
@@ -0,0 +1,808 @@
1
+ """Take the census of the laws every component of a system declares."""
2
+
3
+ # Author: Georgios Douzas <gdouzas@icloud.com>
4
+ # License: MIT
5
+
6
+ from collections.abc import Mapping
7
+ from dataclasses import replace
8
+
9
+ import numpy as np
10
+ from sage.all__sagemath_symbolics import SR, Expression
11
+ from sage.modules.free_module_element import FreeModuleElement
12
+ from sage.structure.element import Matrix
13
+ from sage.symbolic.function import SymbolicFunction
14
+
15
+ from ....core.base import BasePart
16
+ from ....core.elements import FieldElement, GroupElement
17
+ from ....core.laws import (
18
+ BaseLaw,
19
+ BoundaryLaw,
20
+ CascadeLaw,
21
+ CrossingLaw,
22
+ EquationLaw,
23
+ ExtremalLaw,
24
+ JumpLaw,
25
+ LocalRuleLaw,
26
+ MatchLaw,
27
+ NoiseLaw,
28
+ RateLaw,
29
+ RuleLaw,
30
+ SampleLaw,
31
+ TransferLaw,
32
+ UpdateLaw,
33
+ )
34
+ from ....core.laws.utils import distribute_operators, hyperedges_in, laplacian, neighborhoods_in, reductions_in, shifted
35
+ from ....core.spaces import LatticeSpace
36
+ from ....core.specs import CensusRecordSpec, CensusSpec, NodeSpec
37
+ from ....core.system import System
38
+ from ....errors import SkcomplexError, TensorShapeError, TensorSymmetryError, ValidationError
39
+ from ....specs import CallSpec, EntrySpec, TensorSpec
40
+ from ....types import ElementKind, ProcessKey, VariableKind
41
+ from ..._utils import components_of, declarations_of, symbol, symbols_of, vector
42
+ from ...problems import BlockSpec, DeclarationsSpec, KernelSpec
43
+ from ...problems._edge_search import EdgeSearch
44
+ from ...problems._pair_search import PairSearch
45
+ from ...problems._topology_kernel import TopologyKernel
46
+ from ...types import ReadKind
47
+ from .._base import BasePass
48
+ from .._compilation import Compilation
49
+ from .._field_lowering import FieldLowering
50
+ from .._observables import ObservableEvaluator
51
+ from .._observer import Observer
52
+ from .._renewal_law import RenewalLaw
53
+ from ._hyperedges import HYPEREDGE_LAWS, HyperedgeTables
54
+ from ._layout import LayoutPass
55
+ from ._noise import NoisePass
56
+ from ._specs import SpecsPass
57
+
58
+ EDGE_REQUESTS = ('remove-edge', 'rewire')
59
+ SYMMETRY_TOLERANCE = 1e-9
60
+ SYMMETRY_TRIALS = 3
61
+
62
+
63
+ class CensusPass(BasePass):
64
+ """Pass that takes the census of the laws of the system, keeping going past failing components."""
65
+
66
+ def _get_reads(self) -> tuple[str, ...]:
67
+ """Return the fields of the compilation the pass reads."""
68
+ return ('nodes',)
69
+
70
+ def _get_writes(self) -> tuple[str, ...]:
71
+ """Return the fields of the compilation the pass writes."""
72
+ return ('census',)
73
+
74
+ def _run(self, inputs: object = None) -> None:
75
+ """Take the census of the laws of the nodes."""
76
+ compilation = self.compilation_
77
+ compilation.census = self._census_of(compilation.system, Compilation._required(compilation.nodes, 'nodes'))
78
+
79
+ @staticmethod
80
+ def _state_reads(spec: KernelSpec, value: object) -> frozenset[tuple[str, int]]:
81
+ """Return the state components that a law value depends on."""
82
+ if not isinstance(value, Expression):
83
+ return frozenset()
84
+ return frozenset(
85
+ (reference.entry.name, reference.column)
86
+ for item in value.variables()
87
+ if (reference := spec.references.get(item)) is not None and reference.is_state
88
+ )
89
+
90
+ @staticmethod
91
+ def _noise_census(
92
+ spec: KernelSpec,
93
+ law: object,
94
+ declarations: DeclarationsSpec,
95
+ ) -> tuple[tuple[ProcessKey | None, ...], tuple[tuple[str, int], ...], tuple[frozenset[tuple[str, int]], ...]]:
96
+ """Return the processes, driven states, and read states of every target component of a noise law."""
97
+ if not isinstance(law, NoiseLaw):
98
+ return (), (), ()
99
+ targets = components_of(law._get_targets()[0])
100
+ values = (
101
+ components_of(law.value)
102
+ if isinstance(law.value, FreeModuleElement | list | tuple)
103
+ else [law.value] * len(targets)
104
+ )
105
+ references = [spec.references.get(item) for item in targets]
106
+ return (
107
+ tuple(NoisePass._process_keys(spec, law, declarations)),
108
+ tuple((item.entry.name, item.column) for item in references if item is not None),
109
+ tuple(CensusPass._state_reads(spec, value) for value in values),
110
+ )
111
+
112
+ @staticmethod
113
+ def _is_vector(entry: EntrySpec, elements: dict[str, BlockSpec]) -> bool:
114
+ """Check whether the state of a layout entry is declared as a vector of the space's dimension."""
115
+ path, _, name = entry.name.rpartition('.')
116
+ block = elements.get(path)
117
+ if block is None:
118
+ return False
119
+ declaration = declarations_of(block.node.component_type, VariableKind.STATE).get(name)
120
+ return declaration is not None and (declaration.vector or declaration.tensor is not None)
121
+
122
+ @staticmethod
123
+ def _handle_uses(law: BaseLaw, handles: Mapping[Expression, tuple[str, int]]) -> tuple[str, ...]:
124
+ """Return the Wiener handles that a law uses outside the process of a noise law."""
125
+ if not handles:
126
+ return ()
127
+ symbols = symbols_of(
128
+ [value for value in law._get_values(exclude=('process',)) if isinstance(value, Expression)],
129
+ )
130
+ return tuple(sorted(str(item) for item in symbols if item in handles))
131
+
132
+ @staticmethod
133
+ def _component_kind(node: NodeSpec) -> ElementKind:
134
+ """Return the kind of the component of a node."""
135
+ if isinstance(node.component, GroupElement) and node.component.variable:
136
+ return ElementKind.VARIABLE_GROUP
137
+ if isinstance(node.component, GroupElement):
138
+ parts = {'sites': ElementKind.SITE_GROUP, 'edges': ElementKind.EDGE_GROUP}
139
+ parts['hyperedges'] = ElementKind.HYPEREDGE_GROUP
140
+ return parts.get(node.component.on or '', ElementKind.GROUP)
141
+ return ElementKind.ELEMENT
142
+
143
+ @staticmethod
144
+ def _equation_targets(spec: KernelSpec, law: BaseLaw) -> tuple[EntrySpec, ...]:
145
+ """Return the entry of the state an equation names as its target, and none for any other law or target."""
146
+ target = law.target if isinstance(law, EquationLaw) else None
147
+ reference = spec.references.get(target) if isinstance(target, Expression) else None
148
+ return (reference.entry,) if reference is not None and reference.is_state else ()
149
+
150
+ @staticmethod
151
+ def _records_of(
152
+ block: BlockSpec,
153
+ elements: dict[str, BlockSpec],
154
+ observer: Observer,
155
+ declarations: DeclarationsSpec,
156
+ agents: set[str],
157
+ ) -> list[CensusRecordSpec]:
158
+ """Return the census records of the laws of one component."""
159
+ records = []
160
+ specs, _ = SpecsPass._specs_of(block, elements, declarations, observer)
161
+ for spec in specs:
162
+ component = CensusPass._component_of(block.node)
163
+ for law in CensusPass._declared_laws(spec, component):
164
+ items = [item for target in law._get_targets() for item in components_of(target)]
165
+ references = [spec.references.get(item) for item in items if isinstance(item, Expression)]
166
+ targets = tuple(dict.fromkeys(item.entry for item in references if item is not None))
167
+ targets = targets or CensusPass._equation_targets(spec, law)
168
+ owner = CensusPass._law_owner(spec, law, agents)
169
+ vectors = frozenset(entry.name for entry in targets if CensusPass._is_vector(entry, elements))
170
+ kind = CensusPass._component_kind(elements.get(owner, block).node)
171
+ processes, driven, reads = CensusPass._noise_census(spec, law, declarations)
172
+ records.append(
173
+ CensusRecordSpec(
174
+ block.node.path,
175
+ owner,
176
+ law,
177
+ targets,
178
+ vectors,
179
+ kind,
180
+ SpecsPass._group_space(elements.get(owner, block)),
181
+ members=spec.rows,
182
+ handles=CensusPass._handle_uses(law, declarations.handles),
183
+ processes=processes,
184
+ driven=driven,
185
+ reads=reads,
186
+ ),
187
+ )
188
+ return records
189
+
190
+ @staticmethod
191
+ def _census_of(system: System, nodes: list[NodeSpec]) -> CensusSpec:
192
+ """Return the census of the laws of a system, with the errors of the components that fail.
193
+
194
+ The census declares every component and collects its laws as compilation does, without lowering them, and keeps
195
+ going past a failing component, so validation reports every problem at once.
196
+
197
+ Args:
198
+ system:
199
+ The system, with the observables of the run.
200
+
201
+ nodes:
202
+ The nodes of the system.
203
+
204
+ Returns:
205
+ census:
206
+ The census.
207
+ """
208
+ declarations = DeclarationsSpec(time=symbol('t'))
209
+ errors: list[tuple[str, SkcomplexError]] = []
210
+ blocks = []
211
+ groups = LayoutPass._group_sizes(nodes)
212
+ for node in nodes:
213
+ try:
214
+ declarations, block = LayoutPass._declare_component(declarations, node, groups)
215
+ except SkcomplexError as error:
216
+ errors.append((node.path, error))
217
+ continue
218
+ blocks.append(block)
219
+ elements = {block.node.path: block for block in blocks if not block.node.interaction}
220
+ elements.update(declarations.processes)
221
+ live = ObservableEvaluator._lowerable_observables(system, nodes)
222
+ observer = Observer(declarations, live).check().prepare()
223
+ agents = {block.node.path for block in blocks if block.node.is_agent}
224
+ records = []
225
+ for block in blocks:
226
+ try:
227
+ records += CensusPass._records_of(block, elements, observer, declarations, agents)
228
+ except SkcomplexError as error:
229
+ errors.append((block.node.path, error))
230
+ return CensusSpec(system, records, errors, declarations.agents)
231
+
232
+ @staticmethod
233
+ def _renewal_group(spec: KernelSpec, law: RenewalLaw) -> str:
234
+ """Return the path of the element or group whose states a renewal law resets, or the law's component."""
235
+ targets = [item for target in (law.reset or {}) for item in components_of(target)]
236
+ reference = spec.references.get(targets[0]) if targets else None
237
+ return spec.owner if reference is None else reference.entry.name.rpartition('.')[0]
238
+
239
+ @staticmethod
240
+ def _special_owner(spec: KernelSpec, law: BaseLaw, agents: set[str]) -> str | None:
241
+ """Return the owner of a renewal, a rule, a matching, or a topology request, or `None` for another law."""
242
+ if isinstance(law, JumpLaw) and law.waiting is not None:
243
+ return CensusPass._renewal_group(spec, RenewalLaw(law.waiting, law.reset))
244
+ if isinstance(law, RenewalLaw):
245
+ return CensusPass._renewal_group(spec, law)
246
+ if isinstance(law, RuleLaw | MatchLaw):
247
+ paths = [path for value in spec.roles.values() for path in ([value] if isinstance(value, str) else value)]
248
+ return next((path for path in paths if path in agents), next(iter(paths), spec.owner))
249
+ if TopologyKernel._request_of(law) is not None:
250
+ return spec.group or next(iter(spec.groups), spec.owner)
251
+ return None
252
+
253
+ @staticmethod
254
+ def _changed_target(spec: KernelSpec, law: BaseLaw) -> object:
255
+ """Return the target of a law, or the first state a jump changes."""
256
+ if isinstance(law, JumpLaw):
257
+ return next(iter(law.changes or {}))
258
+ if not law._get_targets():
259
+ error_msg = f'A {type(law).__name__} of {spec.owner} changes no state of its component.'
260
+ raise ValidationError(error_msg)
261
+ return law._get_targets()[0]
262
+
263
+ @staticmethod
264
+ def _law_owner(spec: KernelSpec, law: BaseLaw, agents: set[str]) -> str:
265
+ """Return the path of the element or group a law belongs to.
266
+
267
+ A renewal belongs to the group whose states it resets, a rule or a matching to the first agent group among its
268
+ roles, a topology request to the group it changes, and a lattice law to the element or group whose sites it
269
+ updates. Flows, Monte Carlo samples, equations, and events belong to their component, and any other law to the
270
+ element or group whose state it changes.
271
+
272
+ Args:
273
+ spec:
274
+ The kernel spec of the law's component.
275
+
276
+ law:
277
+ The law.
278
+
279
+ agents:
280
+ The paths of the agent elements and groups.
281
+
282
+ Returns:
283
+ owner:
284
+ The path of the owner.
285
+
286
+ Raises:
287
+ ValidationError:
288
+ The law changes no state of its component, or targets a symbol that is not a state.
289
+ """
290
+ owner = CensusPass._special_owner(spec, law, agents)
291
+ if owner is not None:
292
+ return owner
293
+ if isinstance(law, TransferLaw | EquationLaw | CrossingLaw) or (
294
+ isinstance(law, CascadeLaw) and not law._get_targets()
295
+ ):
296
+ return spec.owner
297
+ lattice = isinstance(law, CascadeLaw | LocalRuleLaw | ExtremalLaw | SampleLaw)
298
+ target = law._get_targets()[0] if lattice else CensusPass._changed_target(spec, law)
299
+ return spec._target_references(target)[0].entry.name.rpartition('.')[0]
300
+
301
+ @staticmethod
302
+ def _expressions_of(law: BaseLaw) -> list[Expression]:
303
+ """Return the symbolic components of the targets and the values of a law, and of the laws it holds."""
304
+ found: list[Expression] = []
305
+ for value in (*law._get_targets(), *law._get_values()):
306
+ if isinstance(value, BaseLaw):
307
+ found += CensusPass._expressions_of(value)
308
+ elif isinstance(value, Expression | FreeModuleElement):
309
+ found += [SR(item) for item in components_of(value)]
310
+ return found
311
+
312
+ @staticmethod
313
+ def _outside_reductions(expression: Expression) -> Expression:
314
+ """Return an expression with every reduction and neighbourhood reduction replaced by one placeholder symbol."""
315
+ calls = [item.call for item in reductions_in(expression)] + [item.call for item in neighborhoods_in(expression)]
316
+ calls += [item.call for item in hyperedges_in(expression)]
317
+ if not calls:
318
+ return expression
319
+ placeholder = symbol('_reduction')
320
+ return SR(expression).subs(dict.fromkeys(calls, placeholder))
321
+
322
+ @staticmethod
323
+ def _end_of(edges: KernelSpec, law: BaseLaw) -> str | None:
324
+ """Return the end of an edge whose member alone a law reads, or `None` for a law of the edge.
325
+
326
+ A law of one end reads no member of the edge group and, outside its reductions, the symbols of one end only,
327
+ and targets states of that end. Inside its reductions, the other end stands for the other members.
328
+
329
+ Args:
330
+ edges:
331
+ The spec of the edges.
332
+
333
+ law:
334
+ The law.
335
+
336
+ Returns:
337
+ end:
338
+ `'source'`, `'target'`, or `None`.
339
+ """
340
+ request = TopologyKernel._request_of(law)
341
+ if request is not None and request.kind in EDGE_REQUESTS:
342
+ return None
343
+ if request is None and not all(isinstance(item, Expression | FreeModuleElement) for item in law._get_targets()):
344
+ return None
345
+ expressions = CensusPass._expressions_of(law)
346
+ references = edges.references
347
+ reads = [references.get(item) for item in symbols_of(expressions)]
348
+ if any(reference is not None and reference.source is ReadKind.MEMBER for reference in reads):
349
+ return None
350
+ sides = {ReadKind.FIRST: 'source', ReadKind.SECOND: 'target'}
351
+ outside = symbols_of(CensusPass._outside_reductions(item) for item in expressions)
352
+ ends = {
353
+ sides[reference.source]
354
+ for item in outside
355
+ if (reference := references.get(item)) is not None and reference.source in sides
356
+ }
357
+ if not ends and request is not None:
358
+ return 'source'
359
+ return next(iter(ends)) if len(ends) == 1 else None
360
+
361
+ @staticmethod
362
+ def _substituted_items(
363
+ value: Mapping[object, object] | list[object] | tuple[object, ...] | CallSpec,
364
+ mapping: Mapping[Expression, Expression],
365
+ ) -> object:
366
+ """Return a mapping, a sequence, or a call of a law with the symbols of its items replaced."""
367
+ if isinstance(value, Mapping):
368
+ return {
369
+ CensusPass._substituted(key, mapping): CensusPass._substituted(item, mapping)
370
+ for key, item in value.items()
371
+ }
372
+ if isinstance(value, CallSpec):
373
+ if value.arguments is None:
374
+ return value
375
+ return replace(value, arguments=tuple(CensusPass._substituted(item, mapping) for item in value.arguments))
376
+ return type(value)(CensusPass._substituted(item, mapping) for item in value)
377
+
378
+ @staticmethod
379
+ def _substituted(value: object, mapping: Mapping[Expression, Expression]) -> object:
380
+ """Return a value of a law with symbols replaced, through vectors, mappings, sequences, calls, and laws."""
381
+ if isinstance(value, BaseLaw):
382
+ parameters = value.get_params(deep=False)
383
+ return BasePass._replaced(
384
+ value,
385
+ **{name: CensusPass._substituted(item, mapping) for name, item in parameters.items()},
386
+ )
387
+ if isinstance(value, FreeModuleElement):
388
+ return vector(SR(item).subs(mapping) for item in value)
389
+ if isinstance(value, Expression):
390
+ return value.subs(mapping)
391
+ if isinstance(value, Mapping | list | tuple | CallSpec):
392
+ return CensusPass._substituted_items(value, mapping)
393
+ return value
394
+
395
+ @staticmethod
396
+ def _end_law(edges: KernelSpec, law: BaseLaw, end: str) -> BaseLaw:
397
+ """Return a law of one end of an edge written for the member, with the other end standing for other members.
398
+
399
+ Args:
400
+ edges:
401
+ The spec of the edges.
402
+
403
+ law:
404
+ The law, which reads one end outside its reductions.
405
+
406
+ end:
407
+ `'source'` or `'target'`.
408
+
409
+ Returns:
410
+ law:
411
+ The checked law in the symbols of the member and of the other member.
412
+ """
413
+ own = ReadKind.FIRST if end == 'source' else ReadKind.SECOND
414
+ mapping = {}
415
+ for item, reference in edges.references.items():
416
+ if reference.source in {ReadKind.FIRST, ReadKind.SECOND}:
417
+ member, other = SpecsPass._end_symbols(item)
418
+ mapping[item] = member if reference.source is own else other
419
+ substituted = CensusPass._substituted(law, mapping)
420
+ if not isinstance(substituted, BaseLaw):
421
+ error_msg = f'The law {law!r} of {edges.owner} is not a law once written for the member.'
422
+ raise TypeError(error_msg)
423
+ return substituted.check()
424
+
425
+ @staticmethod
426
+ def _own_end(edges: KernelSpec, law: BaseLaw) -> str | None:
427
+ """Return the end of an edge whose state a rate law per edge targets, or `None` for another law."""
428
+ if not isinstance(law, RateLaw) or not isinstance(law.value, Expression):
429
+ return None
430
+ target = law._get_targets()[0]
431
+ reference = edges.references.get(target) if isinstance(target, Expression) else None
432
+ if reference is None:
433
+ return None
434
+ return {ReadKind.FIRST: 'source', ReadKind.SECOND: 'target'}.get(reference.source)
435
+
436
+ @staticmethod
437
+ def _ends_of(edges: KernelSpec) -> dict[Expression, tuple[Expression, bool]]:
438
+ """Return the symbol of the member and whether it is a state, by the symbol of the other member."""
439
+ found = {}
440
+ for item, reference in edges.references.items():
441
+ if reference.source in {ReadKind.FIRST, ReadKind.SECOND}:
442
+ member, other = SpecsPass._end_symbols(item)
443
+ found[other] = (member, reference.is_state)
444
+ return found
445
+
446
+ @staticmethod
447
+ def _difference(edges: KernelSpec, value: Expression) -> tuple[Expression, Expression] | None:
448
+ """Return the coefficient and the state of a rate that is a constant times the difference of the ends.
449
+
450
+ The coefficient reads no state and nothing of the other member.
451
+
452
+ Args:
453
+ edges:
454
+ The spec of the edges.
455
+
456
+ value:
457
+ The rate of the member, in the symbols of the member and of the other member.
458
+
459
+ Returns:
460
+ difference:
461
+ The coefficient and the symbol of the state of the member, or `None`.
462
+ """
463
+ ends = CensusPass._ends_of(edges)
464
+ states = {member for member, is_state in ends.values() if is_state}
465
+ found = [item for item in value.variables() if item in ends]
466
+ if len(found) != 1 or not ends[found[0]][1]:
467
+ return None
468
+ other, member = found[0], ends[found[0]][0]
469
+ coefficient = SR(value.diff(other))
470
+ if any(item in ends or item in states for item in coefficient.variables()):
471
+ return None
472
+ if not SR(value - coefficient * (other - member)).expand().is_zero():
473
+ return None
474
+ return coefficient, member
475
+
476
+ @staticmethod
477
+ def _squared_spacing(place: FieldElement) -> float | None:
478
+ """Return the factor that turns the Laplacian of a field into the sum of the differences over its neighbours.
479
+
480
+ It is the squared spacing of a lattice with one spacing, `None` for a lattice with several, and 1 elsewhere.
481
+ """
482
+ space = place.space
483
+ if not isinstance(space, LatticeSpace):
484
+ return 1.0
485
+ spacings = set(space.check().prepare().spacings_)
486
+ return spacings.pop() ** 2 if len(spacings) == 1 else None
487
+
488
+ @staticmethod
489
+ def _shifted_law(edges: KernelSpec, law: RateLaw, end: str, space: LatticeSpace) -> RateLaw:
490
+ """Return a rate per edge of a lattice field as a sum over the axes of shifted reads of the other end.
491
+
492
+ The target of an edge is one site ahead of its source along an axis, so the other end of a rate of the target
493
+ is one site behind, and that of a rate of the source one site ahead.
494
+
495
+ Args:
496
+ edges:
497
+ The spec of the edges.
498
+
499
+ law:
500
+ The rate in the symbols of the member and of the other member.
501
+
502
+ end:
503
+ `'source'` or `'target'`, the end the rate belongs to.
504
+
505
+ space:
506
+ The lattice.
507
+
508
+ Returns:
509
+ law:
510
+ The rate of the member.
511
+ """
512
+ value = SR(law.value)
513
+ ends = {
514
+ other: member for other, (member, _) in CensusPass._ends_of(edges).items() if other in value.variables()
515
+ }
516
+ sign = 1 if end == 'source' else -1
517
+ dimensions = space.check().prepare().n_dim_
518
+ total = SR(0)
519
+ for axis, step in enumerate(space.spacings_):
520
+ offset = [sign * step if index == axis else 0 for index in range(dimensions)]
521
+ total += value.subs({other: shifted(member, offset) for other, member in ends.items()})
522
+ return BasePass._replaced(law, value=total).check()
523
+
524
+ @staticmethod
525
+ def _field_laws(edges: KernelSpec, laws: list[BaseLaw]) -> tuple[list[BaseLaw], list[BaseLaw]]:
526
+ """Return the rates per edge of a field lowered to laws of the member, and the laws that stay per edge.
527
+
528
+ Two rates of both ends that are the same constant times the difference of the ends lower to the field's
529
+ Laplacian times its squared spacing. Other rates on a lattice lower to whole-site shifted reads.
530
+
531
+ Args:
532
+ edges:
533
+ The spec of the edges, whose `place` is the field.
534
+
535
+ laws:
536
+ The laws per edge.
537
+
538
+ Returns:
539
+ laws:
540
+ The laws of the member, and the laws that stay per edge.
541
+ """
542
+ place = edges.place
543
+ if place is None:
544
+ return [], laws
545
+ written: dict[int, tuple[str, RateLaw]] = {}
546
+ for index, law in enumerate(laws):
547
+ end = CensusPass._own_end(edges, law)
548
+ item = CensusPass._end_law(edges, law, end) if end is not None else None
549
+ if end is not None and isinstance(item, RateLaw):
550
+ written[index] = (end, item)
551
+ scale = CensusPass._squared_spacing(place)
552
+ lowered: list[BaseLaw] = []
553
+ taken: set[int] = set()
554
+ for index, (end, law) in written.items():
555
+ partner = next(
556
+ (
557
+ other
558
+ for other, (side, item) in written.items()
559
+ if other not in taken
560
+ and side != end
561
+ and str(item._get_targets()[0]) == str(law._get_targets()[0])
562
+ and SR(SR(item.value) - SR(law.value)).is_zero()
563
+ ),
564
+ None,
565
+ )
566
+ difference = CensusPass._difference(edges, SR(law.value))
567
+ if index in taken or partner is None or difference is None or scale is None:
568
+ continue
569
+ coefficient, member = difference
570
+ lowered.append(BasePass._replaced(law, value=coefficient * scale * laplacian(member)).check())
571
+ taken |= {index, partner}
572
+ if isinstance(place.space, LatticeSpace):
573
+ lowered += [
574
+ CensusPass._shifted_law(edges, law, end, place.space)
575
+ for index, (end, law) in written.items()
576
+ if index not in taken
577
+ ]
578
+ taken |= set(written)
579
+ return lowered, [law for index, law in enumerate(laws) if index not in taken]
580
+
581
+ @staticmethod
582
+ def _targets_second(spec: KernelSpec, law: BaseLaw) -> bool:
583
+ """Check whether a law of a hyperedge interaction targets the member of its group on hyperedges or edges."""
584
+ path = spec.roles.get('hyperedge', spec.roles.get('edge'))
585
+ targets = [item for item in law._get_targets() if isinstance(item, Expression | FreeModuleElement)]
586
+ return any(
587
+ reference.entry.name.rpartition('.')[0] == path
588
+ for target in targets
589
+ for reference in spec._target_references(target)
590
+ )
591
+
592
+ @staticmethod
593
+ def _hyperedge_laws(spec: KernelSpec, laws: list[BaseLaw]) -> list[BaseLaw]:
594
+ """Return the laws of one kind of a hyperedge interaction, with their reductions over the members written out.
595
+
596
+ The spec of the focal member keeps the laws of the nodes, and the spec of the hyperedge the laws that target
597
+ the member of the group on hyperedges or edges.
598
+
599
+ Args:
600
+ spec:
601
+ The spec of the hyperedge interaction for one kind of laws and one size.
602
+
603
+ laws:
604
+ The declared laws.
605
+
606
+ Returns:
607
+ laws:
608
+ The laws of the spec, checked.
609
+
610
+ Raises:
611
+ TypeError:
612
+ A law is no longer a law once its reductions are written out.
613
+ """
614
+ kept = []
615
+ for law in laws:
616
+ if CensusPass._targets_second(spec, law) != (spec.hyperedge == HYPEREDGE_LAWS):
617
+ continue
618
+ expansions = HyperedgeTables._expansions(spec, CensusPass._expressions_of(law))
619
+ expanded = CensusPass._substituted(law, expansions) if expansions else law
620
+ if not isinstance(expanded, BaseLaw):
621
+ error_msg = f'The law {law!r} of {spec.owner} is not a law once its reductions are written out.'
622
+ raise TypeError(error_msg)
623
+ kept.append(HyperedgeTables._masked(spec, expanded.check()))
624
+ return kept
625
+
626
+ @staticmethod
627
+ def _opaque_calls(expression: Expression) -> dict[Expression, Expression]:
628
+ """Return a symbol for every outermost call of a symbolic function, which has no value at numbers."""
629
+ if isinstance(expression.operator(), SymbolicFunction):
630
+ return {expression: SR.symbol(f'_call_{abs(hash(str(expression)))}')}
631
+ found: dict[Expression, Expression] = {}
632
+ for operand in expression.operands():
633
+ found.update(CensusPass._opaque_calls(operand))
634
+ return found
635
+
636
+ @staticmethod
637
+ def _breaks_symmetry(residual: Expression) -> bool:
638
+ """Check whether an expression that a symmetry needs to be 0 is not 0 at random values of its symbols."""
639
+ opaque = residual.subs(CensusPass._opaque_calls(residual))
640
+ symbols = opaque.variables()
641
+ generator = np.random.default_rng(len(symbols))
642
+ for _ in range(SYMMETRY_TRIALS):
643
+ values = dict(zip(symbols, generator.uniform(0.1, 1.0, len(symbols)).tolist(), strict=True))
644
+ value = opaque.subs(values)
645
+ if not value.is_numeric() or abs(complex(value)) > SYMMETRY_TOLERANCE:
646
+ return bool(value.is_numeric())
647
+ return False
648
+
649
+ @staticmethod
650
+ def _check_tensor_rate(law: RateLaw, name: str, tensor: TensorSpec, value: Matrix) -> None:
651
+ """Raise an error for a matrix rate whose dependent entries are not the ones its independent entries give."""
652
+ expected = tensor.matrix_of(value[row, column] for row, column in tensor.indices)
653
+ size = tensor.n_dim
654
+ for row in range(size):
655
+ for column in range(size):
656
+ residual = distribute_operators(SR(value[row, column] - expected[row, column])).expand()
657
+ if residual.is_zero() or residual.simplify_full().is_zero():
658
+ continue
659
+ if not CensusPass._breaks_symmetry(residual):
660
+ continue
661
+ last = row == column == size - 1 and tensor.symmetry == 'traceless'
662
+ where = f'the trace {value.trace()}' if last else f'the entry [{row}, {column}]'
663
+ error_msg = (
664
+ f'The rate law {law.label or repr(law.value)} on the tensor state {name} breaks its symmetry '
665
+ f'{tensor.symmetry!r} at {where}, by the comparison at random component values, since Sage does '
666
+ 'not simplify the difference to 0.'
667
+ )
668
+ raise TensorSymmetryError(error_msg)
669
+
670
+ @staticmethod
671
+ def _component_rates(spec: KernelSpec, law: BaseLaw) -> list[BaseLaw]:
672
+ """Return a rate law on a tensor state, or a field operator rate on a vector, as one rate per component.
673
+
674
+ Args:
675
+ spec:
676
+ The kernel spec of the component.
677
+
678
+ law:
679
+ The law as the component returns it.
680
+
681
+ Returns:
682
+ laws:
683
+ The rate of every independent component, or any other law as it is.
684
+
685
+ Raises:
686
+ TensorShapeError:
687
+ The target is not the matrix of a tensor state, or the rate does not have its shape.
688
+
689
+ TensorSymmetryError:
690
+ The rate breaks the symmetry of the state.
691
+ """
692
+ if not isinstance(law, RateLaw):
693
+ return [law]
694
+ if isinstance(law.target, FreeModuleElement) and isinstance(law.value, FreeModuleElement):
695
+ if not any(FieldLowering._has_operators(item) for item in law.value):
696
+ return [law]
697
+ pairs = zip(law.target, law.value, strict=True)
698
+ return [RateLaw(target, rate, law.order, label=law.label) for target, rate in pairs]
699
+ if not isinstance(law.target, Matrix):
700
+ return [law]
701
+ references = [spec.references.get(item) for item in law.target.variables()]
702
+ entry = next((item.entry for item in references if item is not None and item.entry.tensor is not None), None)
703
+ if entry is None or entry.tensor is None:
704
+ error_msg = f'A rate law of {spec.owner} targets the matrix {law.target}, which is no tensor state.'
705
+ raise TensorShapeError(error_msg)
706
+ tensor = entry.tensor
707
+ targets = [law.target[row, column] for row, column in tensor.indices]
708
+ if BaseLaw._is_function(law.value):
709
+ return [RateLaw(vector(targets), law.value, law.order, label=law.label)]
710
+ if not isinstance(law.value, Matrix) or law.value.dimensions() != law.target.dimensions():
711
+ error_msg = (
712
+ f'A rate law of {spec.owner} on the tensor state {entry.name} has the value {law.value}. Give a matrix '
713
+ f'of {tensor.n_dim} rows and {tensor.n_dim} columns.'
714
+ )
715
+ raise TensorShapeError(error_msg)
716
+ CensusPass._check_tensor_rate(law, entry.name, tensor, law.value)
717
+ rates = [law.value[row, column] for row, column in tensor.indices]
718
+ return [RateLaw(target, rate, law.order, label=law.label) for target, rate in zip(targets, rates, strict=True)]
719
+
720
+ @staticmethod
721
+ def _declared_laws(spec: KernelSpec, component: BasePart) -> list[BaseLaw]:
722
+ """Return the laws a component returns for its namespace, after checking their classes against its binding.
723
+
724
+ Args:
725
+ spec:
726
+ The kernel spec of the component.
727
+
728
+ component:
729
+ The object whose `laws` method describes the component.
730
+
731
+ Returns:
732
+ laws:
733
+ The laws as declared.
734
+
735
+ Raises:
736
+ ValidationError:
737
+ `laws` returns something other than declarable laws, or laws its binding does not take.
738
+ """
739
+ returned = component.prepare().run(spec.namespace).laws_
740
+ laws = [law for law in returned if isinstance(law, BaseLaw)]
741
+ if not isinstance(returned, list | tuple) or len(laws) < len(returned):
742
+ error_msg = f'`_get_laws` of {spec.owner} must return a list of laws.'
743
+ raise ValidationError(error_msg)
744
+ split = [item for law in laws for item in CensusPass._component_rates(spec, law)]
745
+ declared = [law.check().prepare(spec.owner) for law in split]
746
+ if spec.hyperedge is not None:
747
+ declared = CensusPass._hyperedge_laws(spec, declared)
748
+ searched = spec.pairs is not None and spec.edges is None
749
+ alone = spec.edges is not None and spec.edges.pairs is None
750
+ rules = [law for law in declared if (searched or alone) and isinstance(law, RuleLaw)]
751
+ declared = [law for law in declared if law not in rules]
752
+ if isinstance(spec.pairs, PairSearch) and not all(isinstance(law, RateLaw) for law in declared):
753
+ error_msg = (
754
+ f'Pair interaction {spec.owner} returns laws other than Rate, which pair interactions do not take.'
755
+ )
756
+ raise ValidationError(error_msg)
757
+ if isinstance(spec.pairs, EdgeSearch):
758
+ declared = CensusPass._field_laws(spec, [law for law in declared if CensusPass._end_of(spec, law) is None])[
759
+ 1
760
+ ]
761
+ if spec.edges is not None:
762
+ edges = spec.edges
763
+ lowered, kept = CensusPass._field_laws(
764
+ edges,
765
+ [law for law in declared if CensusPass._end_of(edges, law) is None],
766
+ )
767
+ if edges.pairs is None and kept:
768
+ error_msg = (
769
+ f'Interaction {spec.owner} over neighbours has laws per edge, but its members live on a space '
770
+ 'without edges. Give the group a lattice or network space, write laws of one end, or on a field '
771
+ 'write a constant times the difference of the ends.'
772
+ )
773
+ raise ValidationError(error_msg)
774
+ declared = [
775
+ *(
776
+ CensusPass._end_law(edges, law, end)
777
+ for law in declared
778
+ if (end := CensusPass._end_of(edges, law)) is not None
779
+ ),
780
+ *lowered,
781
+ ]
782
+ edge_kinds = (RateLaw, NoiseLaw, JumpLaw, UpdateLaw, BoundaryLaw)
783
+ if isinstance(spec.pairs, EdgeSearch) and not all(isinstance(law, edge_kinds) for law in declared):
784
+ error_msg = (
785
+ f'Interaction {spec.owner} over neighbours returns laws other than Rate, Noise, Jump, Update, or '
786
+ 'Boundary laws for its edges. Its edges take these laws, and the laws that read one end of an edge '
787
+ 'run once per member.'
788
+ )
789
+ raise ValidationError(error_msg)
790
+ checked = []
791
+ for law in declared:
792
+ try:
793
+ checked.append(law.prepare(spec.owner))
794
+ except ValidationError as error:
795
+ error_msg = f'{type(law).__name__} of {spec.owner}: {error}'
796
+ raise ValidationError(error_msg) from error
797
+ return [*rules, *checked]
798
+
799
+ @staticmethod
800
+ def _component_of(node: NodeSpec) -> BasePart:
801
+ """Return the part whose laws describe a node, a representative member for a group."""
802
+ if isinstance(node.component, GroupElement):
803
+ group = node.component
804
+ return group.element(group.label).set_params(**(group.values or {})).check()
805
+ if not isinstance(node.component, BasePart):
806
+ error_msg = f'The node {node.path} holds a {type(node.component).__name__}, which declares no laws.'
807
+ raise TypeError(error_msg)
808
+ return node.component