scikit-complexity 0.2.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scikit_complexity-0.2.0.dist-info/METADATA +317 -0
- scikit_complexity-0.2.0.dist-info/RECORD +1748 -0
- scikit_complexity-0.2.0.dist-info/WHEEL +4 -0
- scikit_complexity-0.2.0.dist-info/entry_points.txt +4 -0
- scikit_complexity-0.2.0.dist-info/licenses/LICENSE +21 -0
- skcomplex/__init__.py +1 -0
- skcomplex/analysis/__init__.py +101 -0
- skcomplex/analysis/_alignment.py +263 -0
- skcomplex/analysis/_automata.py +658 -0
- skcomplex/analysis/_base.py +841 -0
- skcomplex/analysis/_clusters.py +298 -0
- skcomplex/analysis/_coarse_grain.py +183 -0
- skcomplex/analysis/_collapse.py +318 -0
- skcomplex/analysis/_complexity.py +129 -0
- skcomplex/analysis/_computational_mechanics.py +220 -0
- skcomplex/analysis/_correlation.py +364 -0
- skcomplex/analysis/_defects.py +111 -0
- skcomplex/analysis/_discovery.py +101 -0
- skcomplex/analysis/_displacement.py +135 -0
- skcomplex/analysis/_distribution.py +327 -0
- skcomplex/analysis/_domains.py +220 -0
- skcomplex/analysis/_embedding.py +235 -0
- skcomplex/analysis/_emergence.py +503 -0
- skcomplex/analysis/_entropy.py +425 -0
- skcomplex/analysis/_ergodicity.py +228 -0
- skcomplex/analysis/_events.py +301 -0
- skcomplex/analysis/_fit.py +368 -0
- skcomplex/analysis/_groups.py +205 -0
- skcomplex/analysis/_information.py +488 -0
- skcomplex/analysis/_invariants.py +409 -0
- skcomplex/analysis/_irreversibility.py +421 -0
- skcomplex/analysis/_kramers_moyal.py +104 -0
- skcomplex/analysis/_large_deviations.py +378 -0
- skcomplex/analysis/_linearization.py +231 -0
- skcomplex/analysis/_local_information.py +166 -0
- skcomplex/analysis/_loops.py +394 -0
- skcomplex/analysis/_lyapunov.py +342 -0
- skcomplex/analysis/_markov.py +303 -0
- skcomplex/analysis/_mode_decomposition.py +209 -0
- skcomplex/analysis/_motifs.py +239 -0
- skcomplex/analysis/_neighbors.py +303 -0
- skcomplex/analysis/_networks.py +286 -0
- skcomplex/analysis/_operator.py +312 -0
- skcomplex/analysis/_partial_information.py +118 -0
- skcomplex/analysis/_passage.py +244 -0
- skcomplex/analysis/_recurrence.py +202 -0
- skcomplex/analysis/_reservoirs.py +387 -0
- skcomplex/analysis/_rolling.py +168 -0
- skcomplex/analysis/_scaling.py +370 -0
- skcomplex/analysis/_sections.py +225 -0
- skcomplex/analysis/_signatures.py +250 -0
- skcomplex/analysis/_sparse_identification.py +398 -0
- skcomplex/analysis/_spectrum.py +164 -0
- skcomplex/analysis/_stability.py +547 -0
- skcomplex/analysis/_surrogates.py +127 -0
- skcomplex/analysis/_symbolic.py +639 -0
- skcomplex/analysis/types.py +43 -0
- skcomplex/base.py +159 -0
- skcomplex/core/__init__.py +1 -0
- skcomplex/core/base.py +150 -0
- skcomplex/core/elements/__init__.py +21 -0
- skcomplex/core/elements/_base.py +84 -0
- skcomplex/core/elements/_compartment.py +52 -0
- skcomplex/core/elements/_density.py +52 -0
- skcomplex/core/elements/_element.py +80 -0
- skcomplex/core/elements/_field.py +192 -0
- skcomplex/core/elements/_group.py +241 -0
- skcomplex/core/elements/_lattice.py +115 -0
- skcomplex/core/elements/_point.py +66 -0
- skcomplex/core/interactions/__init__.py +89 -0
- skcomplex/core/interactions/_advection.py +134 -0
- skcomplex/core/interactions/_base.py +361 -0
- skcomplex/core/interactions/_cascade.py +195 -0
- skcomplex/core/interactions/_choice.py +320 -0
- skcomplex/core/interactions/_conservation.py +164 -0
- skcomplex/core/interactions/_coupling.py +741 -0
- skcomplex/core/interactions/_crossing.py +136 -0
- skcomplex/core/interactions/_diffusion.py +99 -0
- skcomplex/core/interactions/_encounter.py +201 -0
- skcomplex/core/interactions/_euler_lagrange.py +183 -0
- skcomplex/core/interactions/_evolution.py +520 -0
- skcomplex/core/interactions/_feedback.py +79 -0
- skcomplex/core/interactions/_gradient.py +293 -0
- skcomplex/core/interactions/_grouping.py +399 -0
- skcomplex/core/interactions/_hamiltonian.py +191 -0
- skcomplex/core/interactions/_hyperedge.py +96 -0
- skcomplex/core/interactions/_imitation.py +357 -0
- skcomplex/core/interactions/_impulse.py +133 -0
- skcomplex/core/interactions/_interaction.py +58 -0
- skcomplex/core/interactions/_jump.py +201 -0
- skcomplex/core/interactions/_life_cycle.py +424 -0
- skcomplex/core/interactions/_local_rule.py +134 -0
- skcomplex/core/interactions/_map.py +239 -0
- skcomplex/core/interactions/_matching.py +701 -0
- skcomplex/core/interactions/_movement.py +377 -0
- skcomplex/core/interactions/_neighbor.py +88 -0
- skcomplex/core/interactions/_optimization.py +206 -0
- skcomplex/core/interactions/_pair.py +82 -0
- skcomplex/core/interactions/_pair_coupling.py +169 -0
- skcomplex/core/interactions/_rate.py +240 -0
- skcomplex/core/interactions/_reaction.py +466 -0
- skcomplex/core/interactions/_reinforcement.py +226 -0
- skcomplex/core/interactions/_relaxation.py +103 -0
- skcomplex/core/interactions/_sampling.py +177 -0
- skcomplex/core/interactions/_satisfiability.py +145 -0
- skcomplex/core/interactions/_sign_adjustment.py +222 -0
- skcomplex/core/interactions/_topology.py +215 -0
- skcomplex/core/interactions/_training.py +184 -0
- skcomplex/core/interactions/_transfer.py +669 -0
- skcomplex/core/interactions/_transition.py +427 -0
- skcomplex/core/laws/__init__.py +60 -0
- skcomplex/core/laws/_base.py +194 -0
- skcomplex/core/laws/_bilinear.py +91 -0
- skcomplex/core/laws/_boundary.py +59 -0
- skcomplex/core/laws/_cascade.py +79 -0
- skcomplex/core/laws/_crossing.py +87 -0
- skcomplex/core/laws/_dissipator.py +79 -0
- skcomplex/core/laws/_drive.py +56 -0
- skcomplex/core/laws/_emission.py +81 -0
- skcomplex/core/laws/_encounter.py +96 -0
- skcomplex/core/laws/_equation.py +105 -0
- skcomplex/core/laws/_extremal.py +94 -0
- skcomplex/core/laws/_flux.py +108 -0
- skcomplex/core/laws/_fractional_noise.py +65 -0
- skcomplex/core/laws/_generator.py +66 -0
- skcomplex/core/laws/_gradient_step.py +89 -0
- skcomplex/core/laws/_jump.py +137 -0
- skcomplex/core/laws/_local_rule.py +92 -0
- skcomplex/core/laws/_match.py +321 -0
- skcomplex/core/laws/_noise.py +125 -0
- skcomplex/core/laws/_rate.py +82 -0
- skcomplex/core/laws/_rule.py +82 -0
- skcomplex/core/laws/_sample.py +65 -0
- skcomplex/core/laws/_transfer.py +165 -0
- skcomplex/core/laws/_transition.py +77 -0
- skcomplex/core/laws/_update.py +121 -0
- skcomplex/core/laws/utils/__init__.py +142 -0
- skcomplex/core/laws/utils/_agents.py +127 -0
- skcomplex/core/laws/utils/_components.py +63 -0
- skcomplex/core/laws/utils/_conditions.py +198 -0
- skcomplex/core/laws/utils/_contractions.py +74 -0
- skcomplex/core/laws/utils/_delays.py +170 -0
- skcomplex/core/laws/utils/_history.py +167 -0
- skcomplex/core/laws/utils/_local_operators.py +68 -0
- skcomplex/core/laws/utils/_lookups.py +40 -0
- skcomplex/core/laws/utils/_moments.py +122 -0
- skcomplex/core/laws/utils/_operators.py +237 -0
- skcomplex/core/laws/utils/_phase.py +126 -0
- skcomplex/core/laws/utils/_pointwise.py +160 -0
- skcomplex/core/laws/utils/_reductions.py +942 -0
- skcomplex/core/laws/utils/_signals.py +214 -0
- skcomplex/core/laws/utils/_tables.py +4 -0
- skcomplex/core/laws/utils/_tensors.py +235 -0
- skcomplex/core/spaces/__init__.py +52 -0
- skcomplex/core/spaces/_adjacency.py +34 -0
- skcomplex/core/spaces/_base.py +218 -0
- skcomplex/core/spaces/_box.py +41 -0
- skcomplex/core/spaces/_cayley.py +352 -0
- skcomplex/core/spaces/_cone.py +65 -0
- skcomplex/core/spaces/_continuous.py +93 -0
- skcomplex/core/spaces/_continuous_time.py +27 -0
- skcomplex/core/spaces/_discrete_time.py +53 -0
- skcomplex/core/spaces/_generator.py +51 -0
- skcomplex/core/spaces/_lattice.py +194 -0
- skcomplex/core/spaces/_lattice_neighborhood.py +50 -0
- skcomplex/core/spaces/_memory.py +45 -0
- skcomplex/core/spaces/_mesh.py +71 -0
- skcomplex/core/spaces/_moore.py +49 -0
- skcomplex/core/spaces/_nearest.py +41 -0
- skcomplex/core/spaces/_network.py +256 -0
- skcomplex/core/spaces/_phase.py +136 -0
- skcomplex/core/spaces/_radius.py +40 -0
- skcomplex/core/spaces/_static_time.py +34 -0
- skcomplex/core/spaces/_triangular.py +37 -0
- skcomplex/core/spaces/_von_neumann.py +51 -0
- skcomplex/core/specs/__init__.py +25 -0
- skcomplex/core/specs/_census_record_spec.py +72 -0
- skcomplex/core/specs/_census_spec.py +40 -0
- skcomplex/core/specs/_compiled_agents_spec.py +62 -0
- skcomplex/core/specs/_compiled_element_spec.py +59 -0
- skcomplex/core/specs/_compiled_interaction_spec.py +33 -0
- skcomplex/core/specs/_lattice_context_spec.py +40 -0
- skcomplex/core/specs/_lattice_state_spec.py +49 -0
- skcomplex/core/specs/_node_spec.py +64 -0
- skcomplex/core/specs/_operator_view_spec.py +135 -0
- skcomplex/core/specs/_scenario_spec.py +45 -0
- skcomplex/core/specs/_subsystem_spec.py +24 -0
- skcomplex/core/system.py +140 -0
- skcomplex/core/types.py +249 -0
- skcomplex/engine/__init__.py +5 -0
- skcomplex/engine/_utils.py +278 -0
- skcomplex/engine/backends/__init__.py +13 -0
- skcomplex/engine/backends/_base.py +329 -0
- skcomplex/engine/backends/_jax.py +285 -0
- skcomplex/engine/backends/_numba.py +601 -0
- skcomplex/engine/backends/_numba_components.py +67 -0
- skcomplex/engine/backends/_numba_loops.py +163 -0
- skcomplex/engine/backends/_numba_neighbours.py +435 -0
- skcomplex/engine/backends/_numba_printer.py +1023 -0
- skcomplex/engine/backends/_numba_stencils.py +66 -0
- skcomplex/engine/backends/_numpy.py +215 -0
- skcomplex/engine/compile/__init__.py +27 -0
- skcomplex/engine/compile/_base.py +582 -0
- skcomplex/engine/compile/_bound_renewal_spec.py +47 -0
- skcomplex/engine/compile/_compilation.py +351 -0
- skcomplex/engine/compile/_compile.py +100 -0
- skcomplex/engine/compile/_complex.py +216 -0
- skcomplex/engine/compile/_draw_lowering.py +373 -0
- skcomplex/engine/compile/_field_lowering.py +1668 -0
- skcomplex/engine/compile/_flows.py +691 -0
- skcomplex/engine/compile/_forms.py +48 -0
- skcomplex/engine/compile/_laws.py +42 -0
- skcomplex/engine/compile/_learning_compiler.py +481 -0
- skcomplex/engine/compile/_member_reductions.py +206 -0
- skcomplex/engine/compile/_members.py +244 -0
- skcomplex/engine/compile/_observables.py +940 -0
- skcomplex/engine/compile/_observer.py +185 -0
- skcomplex/engine/compile/_pass_compiler.py +1534 -0
- skcomplex/engine/compile/_probe.py +78 -0
- skcomplex/engine/compile/_renewal_law.py +70 -0
- skcomplex/engine/compile/passes/__init__.py +34 -0
- skcomplex/engine/compile/passes/_agents.py +111 -0
- skcomplex/engine/compile/passes/_agents_problem.py +143 -0
- skcomplex/engine/compile/passes/_census.py +808 -0
- skcomplex/engine/compile/passes/_check_fractional_noise.py +107 -0
- skcomplex/engine/compile/passes/_collect.py +31 -0
- skcomplex/engine/compile/passes/_compile_encounters.py +301 -0
- skcomplex/engine/compile/passes/_complex.py +198 -0
- skcomplex/engine/compile/passes/_conserved_noise.py +224 -0
- skcomplex/engine/compile/passes/_core.py +116 -0
- skcomplex/engine/compile/passes/_declare_renewals.py +84 -0
- skcomplex/engine/compile/passes/_draws.py +29 -0
- skcomplex/engine/compile/passes/_encounter_functions.py +60 -0
- skcomplex/engine/compile/passes/_encounter_jacobian.py +25 -0
- skcomplex/engine/compile/passes/_encounter_problem.py +32 -0
- skcomplex/engine/compile/passes/_events.py +204 -0
- skcomplex/engine/compile/passes/_expand_flows.py +32 -0
- skcomplex/engine/compile/passes/_field_functions.py +647 -0
- skcomplex/engine/compile/passes/_field_jacobian.py +38 -0
- skcomplex/engine/compile/passes/_field_problem.py +106 -0
- skcomplex/engine/compile/passes/_flatten.py +339 -0
- skcomplex/engine/compile/passes/_flows_problem.py +29 -0
- skcomplex/engine/compile/passes/_form.py +82 -0
- skcomplex/engine/compile/passes/_fractional_form.py +172 -0
- skcomplex/engine/compile/passes/_fractional_problem.py +91 -0
- skcomplex/engine/compile/passes/_functions.py +485 -0
- skcomplex/engine/compile/passes/_hilbert_space_error.py +10 -0
- skcomplex/engine/compile/passes/_hyperedges.py +598 -0
- skcomplex/engine/compile/passes/_jacobian.py +38 -0
- skcomplex/engine/compile/passes/_kernels.py +407 -0
- skcomplex/engine/compile/passes/_lattices.py +818 -0
- skcomplex/engine/compile/passes/_layout.py +667 -0
- skcomplex/engine/compile/passes/_lower_fields.py +225 -0
- skcomplex/engine/compile/passes/_lower_flows.py +28 -0
- skcomplex/engine/compile/passes/_markov.py +329 -0
- skcomplex/engine/compile/passes/_mask_requests.py +121 -0
- skcomplex/engine/compile/passes/_members.py +30 -0
- skcomplex/engine/compile/passes/_noise.py +196 -0
- skcomplex/engine/compile/passes/_operator_compiler.py +843 -0
- skcomplex/engine/compile/passes/_orders.py +409 -0
- skcomplex/engine/compile/passes/_owners.py +90 -0
- skcomplex/engine/compile/passes/_particles.py +69 -0
- skcomplex/engine/compile/passes/_plan.py +130 -0
- skcomplex/engine/compile/passes/_problem.py +802 -0
- skcomplex/engine/compile/passes/_reduction_lowering.py +1193 -0
- skcomplex/engine/compile/passes/_reductions.py +84 -0
- skcomplex/engine/compile/passes/_renewal_problem.py +357 -0
- skcomplex/engine/compile/passes/_request_jumps.py +51 -0
- skcomplex/engine/compile/passes/_residences.py +140 -0
- skcomplex/engine/compile/passes/_rows.py +162 -0
- skcomplex/engine/compile/passes/_set_renewals_apart.py +29 -0
- skcomplex/engine/compile/passes/_set_rules_apart.py +28 -0
- skcomplex/engine/compile/passes/_specs.py +1317 -0
- skcomplex/engine/compile/passes/_split_requests.py +44 -0
- skcomplex/engine/compile/passes/_topology_functions.py +265 -0
- skcomplex/engine/compile/passes/_topology_problem.py +27 -0
- skcomplex/engine/compile/passes/_towards.py +66 -0
- skcomplex/engine/compile/passes/_unpack_matches.py +29 -0
- skcomplex/engine/compile/passes/_unpack_renewals.py +41 -0
- skcomplex/engine/problems/__init__.py +61 -0
- skcomplex/engine/problems/_base.py +150 -0
- skcomplex/engine/problems/_base_problem_spec.py +153 -0
- skcomplex/engine/problems/_block_spec.py +48 -0
- skcomplex/engine/problems/_born_spec.py +24 -0
- skcomplex/engine/problems/_cascade_kernel.py +134 -0
- skcomplex/engine/problems/_collision_kernel.py +147 -0
- skcomplex/engine/problems/_compiled_delay_spec.py +21 -0
- skcomplex/engine/problems/_compiled_request_spec.py +46 -0
- skcomplex/engine/problems/_control_problem_spec.py +90 -0
- skcomplex/engine/problems/_declarations_spec.py +126 -0
- skcomplex/engine/problems/_delayed_state_spec.py +50 -0
- skcomplex/engine/problems/_diffusive_limit_spec.py +50 -0
- skcomplex/engine/problems/_draw_kernel.py +128 -0
- skcomplex/engine/problems/_drive_kernel.py +65 -0
- skcomplex/engine/problems/_dynamics_spec.py +28 -0
- skcomplex/engine/problems/_edge_row_search.py +78 -0
- skcomplex/engine/problems/_edge_search.py +64 -0
- skcomplex/engine/problems/_encounter_kernel.py +200 -0
- skcomplex/engine/problems/_event_kernel.py +70 -0
- skcomplex/engine/problems/_expression_printer.py +410 -0
- skcomplex/engine/problems/_extremal_kernel.py +125 -0
- skcomplex/engine/problems/_field_operator_kernel.py +105 -0
- skcomplex/engine/problems/_finite_volume_kernel.py +423 -0
- skcomplex/engine/problems/_flow_term_spec.py +45 -0
- skcomplex/engine/problems/_frame_spec.py +105 -0
- skcomplex/engine/problems/_jacobian_kernel.py +575 -0
- skcomplex/engine/problems/_kernel_spec.py +130 -0
- skcomplex/engine/problems/_kinetic_problem_spec.py +23 -0
- skcomplex/engine/problems/_law_kernel.py +604 -0
- skcomplex/engine/problems/_learning_problem_spec.py +67 -0
- skcomplex/engine/problems/_linear_term_spec.py +50 -0
- skcomplex/engine/problems/_loop_term_spec.py +44 -0
- skcomplex/engine/problems/_lowered_kernels_spec.py +59 -0
- skcomplex/engine/problems/_markov_kernel.py +68 -0
- skcomplex/engine/problems/_metric_search.py +155 -0
- skcomplex/engine/problems/_monte_carlo_kernel.py +213 -0
- skcomplex/engine/problems/_neighborhood_kernel.py +594 -0
- skcomplex/engine/problems/_noise_term_spec.py +26 -0
- skcomplex/engine/problems/_observed_spec.py +22 -0
- skcomplex/engine/problems/_operator_kernel.py +102 -0
- skcomplex/engine/problems/_operator_lowering.py +323 -0
- skcomplex/engine/problems/_operator_problem_spec.py +138 -0
- skcomplex/engine/problems/_output_spec.py +78 -0
- skcomplex/engine/problems/_pair_search.py +86 -0
- skcomplex/engine/problems/_partials_spec.py +27 -0
- skcomplex/engine/problems/_partition_spec.py +39 -0
- skcomplex/engine/problems/_printed_spec.py +24 -0
- skcomplex/engine/problems/_problem_functions_spec.py +102 -0
- skcomplex/engine/problems/_problem_spec.py +365 -0
- skcomplex/engine/problems/_random_stream.py +49 -0
- skcomplex/engine/problems/_record_spec.py +22 -0
- skcomplex/engine/problems/_recorded_spec.py +21 -0
- skcomplex/engine/problems/_reduction_kernel.py +254 -0
- skcomplex/engine/problems/_reduction_schedule_spec.py +97 -0
- skcomplex/engine/problems/_reference_spec.py +114 -0
- skcomplex/engine/problems/_relation_spec.py +29 -0
- skcomplex/engine/problems/_renewal_kernel.py +250 -0
- skcomplex/engine/problems/_request_spec.py +27 -0
- skcomplex/engine/problems/_rule_kernel.py +227 -0
- skcomplex/engine/problems/_set_symbol_spec.py +28 -0
- skcomplex/engine/problems/_source_loader.py +113 -0
- skcomplex/engine/problems/_static_search.py +42 -0
- skcomplex/engine/problems/_steps.py +39 -0
- skcomplex/engine/problems/_sweep_spec.py +26 -0
- skcomplex/engine/problems/_symmetry_spec.py +29 -0
- skcomplex/engine/problems/_too_dense.py +8 -0
- skcomplex/engine/problems/_topology_kernel.py +589 -0
- skcomplex/engine/problems/_transfer_network.py +4 -0
- skcomplex/engine/problems/_transfer_network_spec.py +50 -0
- skcomplex/engine/problems/_transfer_state_spec.py +68 -0
- skcomplex/engine/runtime/__init__.py +22 -0
- skcomplex/engine/runtime/_as_fast_as_possible.py +17 -0
- skcomplex/engine/runtime/_base.py +137 -0
- skcomplex/engine/runtime/_conservation.py +125 -0
- skcomplex/engine/runtime/_invariants.py +100 -0
- skcomplex/engine/runtime/_real_time.py +55 -0
- skcomplex/engine/runtime/_recorder.py +84 -0
- skcomplex/engine/runtime/_simulations.py +665 -0
- skcomplex/engine/runtime/_trajectories.py +314 -0
- skcomplex/engine/solvers/__init__.py +95 -0
- skcomplex/engine/solvers/_base.py +372 -0
- skcomplex/engine/solvers/_caputo.py +194 -0
- skcomplex/engine/solvers/_collocation.py +334 -0
- skcomplex/engine/solvers/_convolution.py +155 -0
- skcomplex/engine/solvers/_cosimulation.py +400 -0
- skcomplex/engine/solvers/_crank_nicolson.py +32 -0
- skcomplex/engine/solvers/_defaults.py +34 -0
- skcomplex/engine/solvers/_etdrk4.py +86 -0
- skcomplex/engine/solvers/_euler_maruyama.py +161 -0
- skcomplex/engine/solvers/_event_locator.py +249 -0
- skcomplex/engine/solvers/_external.py +94 -0
- skcomplex/engine/solvers/_fractional_abm.py +126 -0
- skcomplex/engine/solvers/_fractional_euler_maruyama.py +322 -0
- skcomplex/engine/solvers/_gillespie.py +135 -0
- skcomplex/engine/solvers/_gradient_descent.py +353 -0
- skcomplex/engine/solvers/_grunwald_letnikov.py +83 -0
- skcomplex/engine/solvers/_heun.py +89 -0
- skcomplex/engine/solvers/_history.py +184 -0
- skcomplex/engine/solvers/_horizon_error.py +10 -0
- skcomplex/engine/solvers/_imex2.py +40 -0
- skcomplex/engine/solvers/_imex_euler.py +35 -0
- skcomplex/engine/solvers/_jump_trajectories.py +98 -0
- skcomplex/engine/solvers/_kinetics.py +242 -0
- skcomplex/engine/solvers/_l1.py +91 -0
- skcomplex/engine/solvers/_lammps.py +745 -0
- skcomplex/engine/solvers/_lammps_fix_spec.py +41 -0
- skcomplex/engine/solvers/_lattice.py +79 -0
- skcomplex/engine/solvers/_lindblad.py +70 -0
- skcomplex/engine/solvers/_maps.py +105 -0
- skcomplex/engine/solvers/_mesa.py +1624 -0
- skcomplex/engine/solvers/_milstein.py +93 -0
- skcomplex/engine/solvers/_monte_carlo.py +43 -0
- skcomplex/engine/solvers/_operator.py +212 -0
- skcomplex/engine/solvers/_optimal_control.py +368 -0
- skcomplex/engine/solvers/_pontryagin.py +298 -0
- skcomplex/engine/solvers/_renewal.py +90 -0
- skcomplex/engine/solvers/_renewals.py +190 -0
- skcomplex/engine/solvers/_rk4.py +263 -0
- skcomplex/engine/solvers/_root.py +176 -0
- skcomplex/engine/solvers/_rows.py +49 -0
- skcomplex/engine/solvers/_scipy_ode.py +602 -0
- skcomplex/engine/solvers/_sde.py +164 -0
- skcomplex/engine/solvers/_semi_lagrangian.py +213 -0
- skcomplex/engine/solvers/_solver.py +159 -0
- skcomplex/engine/solvers/_split.py +394 -0
- skcomplex/engine/solvers/_ssprk.py +147 -0
- skcomplex/engine/solvers/_strang_splitting.py +178 -0
- skcomplex/engine/solvers/_unitary.py +68 -0
- skcomplex/engine/solvers/_velocity_verlet.py +171 -0
- skcomplex/engine/solvers/_yoshida4.py +242 -0
- skcomplex/engine/types.py +90 -0
- skcomplex/engine/viz/__init__.py +35 -0
- skcomplex/engine/viz/_agents.py +223 -0
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"""Declare the states and parameters of every component of a system in the layout of its problem."""
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compilation.layout = declarations
|
|
57
|
+
|
|
58
|
+
@staticmethod
|
|
59
|
+
def _check_symbol_names(blocks: Mapping[str, BlockSpec]) -> None:
|
|
60
|
+
"""Raise an error when two variables produce the same symbol name."""
|
|
61
|
+
seen: dict[str, str] = {}
|
|
62
|
+
for block in blocks.values():
|
|
63
|
+
for item, reference in block.references.items():
|
|
64
|
+
name = str(item)
|
|
65
|
+
if name.startswith(COORDINATE_PREFIX):
|
|
66
|
+
continue
|
|
67
|
+
if name in seen and seen[name] != reference.entry.name:
|
|
68
|
+
error_msg = (
|
|
69
|
+
f'{reference.entry.name} and {seen[name]} produce the same symbol {name}. Rename one '
|
|
70
|
+
'of their labels or variables.'
|
|
71
|
+
)
|
|
72
|
+
raise LabelError(error_msg)
|
|
73
|
+
seen[name] = reference.entry.name
|
|
74
|
+
|
|
75
|
+
@staticmethod
|
|
76
|
+
def _group_sizes(nodes: list[NodeSpec]) -> dict[str, int]:
|
|
77
|
+
"""Return the number of members of every group of a system tree, by path."""
|
|
78
|
+
return {node.path: node.members for node in nodes if node.members is not None and not node.interaction}
|
|
79
|
+
|
|
80
|
+
@staticmethod
|
|
81
|
+
def _declare_component(
|
|
82
|
+
declarations: DeclarationsSpec,
|
|
83
|
+
node: NodeSpec,
|
|
84
|
+
groups: Mapping[str, int],
|
|
85
|
+
) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
86
|
+
"""Return the declarations with the states and parameters of a component added, and the block of the component.
|
|
87
|
+
|
|
88
|
+
Args:
|
|
89
|
+
declarations:
|
|
90
|
+
The declarations so far.
|
|
91
|
+
|
|
92
|
+
node:
|
|
93
|
+
The component with its place in the tree.
|
|
94
|
+
|
|
95
|
+
groups:
|
|
96
|
+
The number of members of every group of the system tree, by path, which give the shapes of shaped
|
|
97
|
+
parameters.
|
|
98
|
+
|
|
99
|
+
Returns:
|
|
100
|
+
declarations:
|
|
101
|
+
The declarations with the component.
|
|
102
|
+
|
|
103
|
+
block:
|
|
104
|
+
The block of the component.
|
|
105
|
+
"""
|
|
106
|
+
block = BlockSpec(node)
|
|
107
|
+
states = {} if node.is_agent else declarations_of(node.component_type, VariableKind.STATE)
|
|
108
|
+
parameters = declarations_of(node.component_type, VariableKind.PARAMETER)
|
|
109
|
+
for variable, declaration in states.items():
|
|
110
|
+
if declaration.shape is None:
|
|
111
|
+
declarations, block = LayoutPass._declare(declarations, block, variable, declaration, is_state=True)
|
|
112
|
+
for variable, declaration in parameters.items():
|
|
113
|
+
if declaration.shape is None:
|
|
114
|
+
declarations, block = LayoutPass._declare(declarations, block, variable, declaration, is_state=False)
|
|
115
|
+
for variable, declaration in {**states, **parameters}.items():
|
|
116
|
+
if declaration.shape is not None:
|
|
117
|
+
shape = LayoutPass._role_shape(node, variable, declaration, groups)
|
|
118
|
+
declarations, block = LayoutPass._declare_shaped(declarations, block, variable, shape, declaration)
|
|
119
|
+
if node.is_agent:
|
|
120
|
+
declarations, block = LayoutPass._declare_agents(declarations, block)
|
|
121
|
+
declarations, block = LayoutPass._declare_coordinates(declarations, block)
|
|
122
|
+
if isinstance(node.component, BaseInteraction):
|
|
123
|
+
declarations = LayoutPass._declare_processes(declarations, node)
|
|
124
|
+
if node.active is not None:
|
|
125
|
+
declarations, block = LayoutPass._declare_topology(declarations, block)
|
|
126
|
+
return replace(declarations, blocks={**declarations.blocks, node.path: block}), block
|
|
127
|
+
|
|
128
|
+
@staticmethod
|
|
129
|
+
def _declare_processes(declarations: DeclarationsSpec, node: NodeSpec) -> DeclarationsSpec:
|
|
130
|
+
"""Return the declarations with a block holding the handle `dW` of every Wiener process an interaction binds."""
|
|
131
|
+
processes, handles = dict(declarations.processes), dict(declarations.handles)
|
|
132
|
+
for path, wiener in LayoutPass._noise_processes([node]).items():
|
|
133
|
+
if path in processes:
|
|
134
|
+
continue
|
|
135
|
+
base = f'dW_{re.sub(r"[^0-9A-Za-z]", "_", path)}'
|
|
136
|
+
handle = (
|
|
137
|
+
symbol(base)
|
|
138
|
+
if wiener.dimension == 1
|
|
139
|
+
else vector(symbol(f'{base}_{index}') for index in range(wiener.dimension))
|
|
140
|
+
)
|
|
141
|
+
process = NodeSpec(path, node.scope, wiener, node.space, WienerProcessSpec, interaction=True)
|
|
142
|
+
processes[path] = BlockSpec(process, {'dW': handle})
|
|
143
|
+
for index, item in enumerate(components_of(handle)):
|
|
144
|
+
handles[item] = (path, index)
|
|
145
|
+
return replace(declarations, processes=processes, handles=handles)
|
|
146
|
+
|
|
147
|
+
@staticmethod
|
|
148
|
+
def _with_entry(
|
|
149
|
+
declarations: DeclarationsSpec,
|
|
150
|
+
entry: EntrySpec,
|
|
151
|
+
value: Array,
|
|
152
|
+
is_state: bool,
|
|
153
|
+
) -> DeclarationsSpec:
|
|
154
|
+
"""Return the declarations with an entry and its initial value added to the states or the parameters."""
|
|
155
|
+
if is_state:
|
|
156
|
+
return replace(
|
|
157
|
+
declarations,
|
|
158
|
+
states=(*declarations.states, entry),
|
|
159
|
+
initial_states=(*declarations.initial_states, value),
|
|
160
|
+
)
|
|
161
|
+
return replace(
|
|
162
|
+
declarations,
|
|
163
|
+
parameters=(*declarations.parameters, entry),
|
|
164
|
+
initial_parameters=(*declarations.initial_parameters, value),
|
|
165
|
+
)
|
|
166
|
+
|
|
167
|
+
@staticmethod
|
|
168
|
+
def _declare(
|
|
169
|
+
declarations: DeclarationsSpec,
|
|
170
|
+
block: BlockSpec,
|
|
171
|
+
variable: str,
|
|
172
|
+
declaration: VariableSpec,
|
|
173
|
+
is_state: bool,
|
|
174
|
+
) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
175
|
+
"""Return the declarations and the block with one variable of a component added."""
|
|
176
|
+
node = block.node
|
|
177
|
+
name = f'{node.path}.{variable}'
|
|
178
|
+
per = block.per
|
|
179
|
+
if declaration.per is None:
|
|
180
|
+
member_shape = LayoutPass._shape_of(name, declaration, node.space)
|
|
181
|
+
else:
|
|
182
|
+
member_shape = LayoutPass._per_entry_shape(node, variable, declaration)
|
|
183
|
+
per = per | {variable}
|
|
184
|
+
members = None if node.is_agent else node.members
|
|
185
|
+
shape = member_shape if members is None else (members, *member_shape)
|
|
186
|
+
value = LayoutPass._coerce_value(
|
|
187
|
+
name,
|
|
188
|
+
LayoutPass._value_of(node, variable),
|
|
189
|
+
member_shape,
|
|
190
|
+
declaration.domain,
|
|
191
|
+
members,
|
|
192
|
+
period=declaration.period,
|
|
193
|
+
)
|
|
194
|
+
is_complex = declaration.domain is CC
|
|
195
|
+
start = declarations.ends[is_state]
|
|
196
|
+
tensor = LayoutPass._tensor_of(declaration, node.space)
|
|
197
|
+
entry = EntrySpec(name, start, shape, declaration.domain, members, is_complex, declaration.period, tensor)
|
|
198
|
+
base = f'{variable}_{re.sub(r"[^0-9A-Za-z]", "_", node.path)}'
|
|
199
|
+
suffixes = tensor.names if tensor is not None else range(member_shape[0] if member_shape else 0)
|
|
200
|
+
names = [f'{base}_{suffix}' for suffix in suffixes] if member_shape else [base]
|
|
201
|
+
columns = [f'{item}_{part}' for item in names for part in ('re', 'im')] if is_complex else names
|
|
202
|
+
domain = RR if is_complex else declaration.domain
|
|
203
|
+
components = [symbol(item, domain) for item in columns]
|
|
204
|
+
values_of = (
|
|
205
|
+
[real + I * imaginary for real, imaginary in itertools.batched(components, 2)] if is_complex else components
|
|
206
|
+
)
|
|
207
|
+
block = replace(
|
|
208
|
+
block,
|
|
209
|
+
symbols={**block.symbols, variable: vector(values_of) if member_shape else values_of[0]},
|
|
210
|
+
entries={**block.entries, variable: entry},
|
|
211
|
+
references={
|
|
212
|
+
**block.references,
|
|
213
|
+
**{item: ReferenceSpec(entry, is_state, column) for column, item in enumerate(components)},
|
|
214
|
+
},
|
|
215
|
+
per=per,
|
|
216
|
+
)
|
|
217
|
+
return LayoutPass._with_entry(declarations, entry, value, is_state), block
|
|
218
|
+
|
|
219
|
+
@staticmethod
|
|
220
|
+
def _role_shape(
|
|
221
|
+
node: NodeSpec,
|
|
222
|
+
variable: str,
|
|
223
|
+
declaration: VariableSpec,
|
|
224
|
+
groups: Mapping[str, int],
|
|
225
|
+
) -> tuple[int, ...]:
|
|
226
|
+
"""Return the shape of a shaped parameter from the sizes of the groups its roles bind.
|
|
227
|
+
|
|
228
|
+
Args:
|
|
229
|
+
node:
|
|
230
|
+
The component with its place in the tree.
|
|
231
|
+
|
|
232
|
+
variable:
|
|
233
|
+
The name of the parameter.
|
|
234
|
+
|
|
235
|
+
declaration:
|
|
236
|
+
The declaration of the parameter.
|
|
237
|
+
|
|
238
|
+
groups:
|
|
239
|
+
The number of members of every group of the system tree, by path.
|
|
240
|
+
|
|
241
|
+
Returns:
|
|
242
|
+
shape:
|
|
243
|
+
The number of members of the group of every role of the shape.
|
|
244
|
+
|
|
245
|
+
Raises:
|
|
246
|
+
ValidationError:
|
|
247
|
+
A role of the shape is not a role of the component or is not bound to a group.
|
|
248
|
+
"""
|
|
249
|
+
roles = declarations_of(node.component_type, VariableKind.ROLE)
|
|
250
|
+
shape = []
|
|
251
|
+
for role in declaration.shape or ():
|
|
252
|
+
label = getattr(node.component, role, None) if role in roles else None
|
|
253
|
+
size = groups.get(f'{node.scope}{label}') if isinstance(label, str) else None
|
|
254
|
+
if size is None:
|
|
255
|
+
error_msg = (
|
|
256
|
+
f'{node.path}.{variable} is shaped by the role {role!r}, which binds {label!r}, not a group. Bind '
|
|
257
|
+
f'the role {role!r} to a group, whose number of members gives the size of the parameter.'
|
|
258
|
+
)
|
|
259
|
+
raise ValidationError(error_msg)
|
|
260
|
+
shape.append(size)
|
|
261
|
+
return tuple(shape)
|
|
262
|
+
|
|
263
|
+
@staticmethod
|
|
264
|
+
def _declare_shaped(
|
|
265
|
+
declarations: DeclarationsSpec,
|
|
266
|
+
block: BlockSpec,
|
|
267
|
+
variable: str,
|
|
268
|
+
shape: tuple[int, ...],
|
|
269
|
+
declaration: VariableSpec,
|
|
270
|
+
) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
271
|
+
"""Return the declarations and the block with a shaped parameter of a component added.
|
|
272
|
+
|
|
273
|
+
The parameter takes one block of the vector in row-major order, which laws read as `s.<variable>`, one symbol
|
|
274
|
+
that the reductions taking it lower to the reshaped block.
|
|
275
|
+
"""
|
|
276
|
+
node = block.node
|
|
277
|
+
name = f'{node.path}.{variable}'
|
|
278
|
+
value = LayoutPass._coerce_value(name, LayoutPass._value_of(node, variable), shape, declaration.domain)
|
|
279
|
+
is_state = declaration.adaptive
|
|
280
|
+
entry = EntrySpec(name, declarations.ends[is_state], shape, declaration.domain)
|
|
281
|
+
handle = symbol(f'{variable}_{re.sub(r"[^0-9A-Za-z]", "_", node.path)}', declaration.domain)
|
|
282
|
+
block = replace(
|
|
283
|
+
block,
|
|
284
|
+
symbols={**block.symbols, variable: handle},
|
|
285
|
+
entries={**block.entries, variable: entry},
|
|
286
|
+
references={**block.references, handle: ReferenceSpec(entry, is_state, 0)},
|
|
287
|
+
)
|
|
288
|
+
return LayoutPass._with_entry(declarations, entry, value, is_state), block
|
|
289
|
+
|
|
290
|
+
@staticmethod
|
|
291
|
+
def _declare_coordinates(
|
|
292
|
+
declarations: DeclarationsSpec,
|
|
293
|
+
block: BlockSpec,
|
|
294
|
+
) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
295
|
+
"""Return the declarations and the block with a hidden parameter of every class coordinate at every site."""
|
|
296
|
+
component = block.node.component
|
|
297
|
+
space = component.space if isinstance(component, FieldElement) else None
|
|
298
|
+
if not isinstance(space, PhaseSpace):
|
|
299
|
+
return declarations, block
|
|
300
|
+
space.check().prepare()
|
|
301
|
+
rows = space.size_
|
|
302
|
+
for name, axis in space.class_axes_.items():
|
|
303
|
+
shape = [1] * space.n_dim_
|
|
304
|
+
shape[axis] = -1
|
|
305
|
+
values = np.broadcast_to(np.reshape(space.coordinates_[name], shape), space.shape_).ravel().copy()
|
|
306
|
+
variable = f'{COORDINATE_PREFIX}{name}'
|
|
307
|
+
entry = EntrySpec(f'{block.node.path}.{variable}', declarations.ends[False], (rows,), RR, rows)
|
|
308
|
+
declarations = LayoutPass._with_entry(declarations, entry, values, is_state=False)
|
|
309
|
+
block = replace(
|
|
310
|
+
block,
|
|
311
|
+
symbols={**block.symbols, variable: coordinate(name)},
|
|
312
|
+
entries={**block.entries, variable: entry},
|
|
313
|
+
references={**block.references, coordinate(name): ReferenceSpec(entry, False, 0, ReadKind.MEMBER)},
|
|
314
|
+
)
|
|
315
|
+
return declarations, block
|
|
316
|
+
|
|
317
|
+
@staticmethod
|
|
318
|
+
def _declare_agents(declarations: DeclarationsSpec, block: BlockSpec) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
319
|
+
"""Return the declarations and the block with the symbols that reductions of an agent group read.
|
|
320
|
+
|
|
321
|
+
The symbols are the members, the scalar states, and the scalar parameters of the group. The states of agents
|
|
322
|
+
live in the agent stepper, so their symbols have no entries. The symbol of the members comes first in the
|
|
323
|
+
namespace, so a count names the group by it.
|
|
324
|
+
"""
|
|
325
|
+
node = block.node
|
|
326
|
+
base = re.sub(r'[^0-9A-Za-z]', '_', node.path)
|
|
327
|
+
members = symbol(f'members_{base}')
|
|
328
|
+
symbols: dict[str, Expression | FreeModuleElement] = {_MEMBERS: members, **block.symbols}
|
|
329
|
+
agents = {**declarations.agents, members: (node.path, '')}
|
|
330
|
+
for variable, declaration in declarations_of(node.component_type, VariableKind.STATE).items():
|
|
331
|
+
if declaration.vector or declaration.domain is CC:
|
|
332
|
+
continue
|
|
333
|
+
item = symbol(f'{variable}_{base}', declaration.domain)
|
|
334
|
+
symbols[variable] = item
|
|
335
|
+
agents[item] = (node.path, variable)
|
|
336
|
+
for variable in block.entries:
|
|
337
|
+
value = symbols[variable]
|
|
338
|
+
if isinstance(value, Expression) and value.is_symbol():
|
|
339
|
+
agents[value] = (node.path, variable)
|
|
340
|
+
return replace(declarations, agents=agents), replace(block, symbols=symbols)
|
|
341
|
+
|
|
342
|
+
@staticmethod
|
|
343
|
+
def _declare_hidden(
|
|
344
|
+
declarations: DeclarationsSpec,
|
|
345
|
+
block: BlockSpec,
|
|
346
|
+
variable: str,
|
|
347
|
+
values: Array,
|
|
348
|
+
) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
349
|
+
"""Return the declarations and the block with a hidden parameter of one value or one row per member of a group.
|
|
350
|
+
|
|
351
|
+
Laws read the parameter as `s.<variable>`, a vector for values with one row per member.
|
|
352
|
+
"""
|
|
353
|
+
node = block.node
|
|
354
|
+
rows = node.members or 1
|
|
355
|
+
shape = (rows, *np.shape(values)[1:])
|
|
356
|
+
entry = EntrySpec(f'{node.path}.{variable}', declarations.ends[False], shape, RR, rows)
|
|
357
|
+
base = f'{variable.strip("_")}_{re.sub(r"[^0-9A-Za-z]", "_", node.path)}_topology'
|
|
358
|
+
items = [symbol(f'{base}_{column}', RR) for column in range(shape[1])] if len(shape) > 1 else [symbol(base, RR)]
|
|
359
|
+
block = replace(
|
|
360
|
+
block,
|
|
361
|
+
symbols={**block.symbols, variable: vector(items) if len(shape) > 1 else items[0]},
|
|
362
|
+
entries={**block.entries, variable: entry},
|
|
363
|
+
references={
|
|
364
|
+
**block.references,
|
|
365
|
+
**{item: ReferenceSpec(entry, False, column) for column, item in enumerate(items)},
|
|
366
|
+
},
|
|
367
|
+
)
|
|
368
|
+
return (
|
|
369
|
+
LayoutPass._with_entry(declarations, entry, np.ravel(np.asarray(values, dtype=float)), is_state=False),
|
|
370
|
+
block,
|
|
371
|
+
)
|
|
372
|
+
|
|
373
|
+
@staticmethod
|
|
374
|
+
def _declare_topology(declarations: DeclarationsSpec, block: BlockSpec) -> tuple[DeclarationsSpec, BlockSpec]:
|
|
375
|
+
"""Return the declarations and the block with the activity of every row of a capacity group.
|
|
376
|
+
|
|
377
|
+
A group on edges also gets the ends of every edge, and a group on hyperedges the members of every hyperedge,
|
|
378
|
+
whose hyperedges all have one size.
|
|
379
|
+
"""
|
|
380
|
+
node = block.node
|
|
381
|
+
group = node.component
|
|
382
|
+
if not isinstance(group, GroupElement):
|
|
383
|
+
error_msg = f'{node.path} has a capacity layout, but it is not a group.'
|
|
384
|
+
raise ValidationError(error_msg)
|
|
385
|
+
rows, active = node.members or 0, node.active or 0
|
|
386
|
+
declarations, block = LayoutPass._declare_hidden(
|
|
387
|
+
declarations,
|
|
388
|
+
block,
|
|
389
|
+
_ACTIVE,
|
|
390
|
+
(np.arange(rows) < active).astype(float),
|
|
391
|
+
)
|
|
392
|
+
if group.on not in {'edges', 'hyperedges'}:
|
|
393
|
+
return declarations, block
|
|
394
|
+
space = node.space
|
|
395
|
+
if not isinstance(space, NetworkSpace):
|
|
396
|
+
error_msg = f'The group {node.path} lies on the {group.on} of a space that is not a network.'
|
|
397
|
+
raise ValidationError(error_msg)
|
|
398
|
+
if group.on == 'hyperedges':
|
|
399
|
+
return LayoutPass._declare_hidden(declarations, block, MEMBERS, LayoutPass._members(node, space))
|
|
400
|
+
padding = np.zeros(rows - active, dtype=np.intp)
|
|
401
|
+
for variable, ends in zip(ENDS, space.edges_[group.layer], strict=True):
|
|
402
|
+
declarations, block = LayoutPass._declare_hidden(
|
|
403
|
+
declarations,
|
|
404
|
+
block,
|
|
405
|
+
variable,
|
|
406
|
+
np.concatenate([ends, padding]),
|
|
407
|
+
)
|
|
408
|
+
return declarations, block
|
|
409
|
+
|
|
410
|
+
@staticmethod
|
|
411
|
+
def _members(node: NodeSpec, space: NetworkSpace) -> Array:
|
|
412
|
+
"""Return the member nodes of every row of a variable group on hyperedges, with zeros in the free rows.
|
|
413
|
+
|
|
414
|
+
Args:
|
|
415
|
+
node:
|
|
416
|
+
The node of the variable group.
|
|
417
|
+
|
|
418
|
+
space:
|
|
419
|
+
The prepared network space.
|
|
420
|
+
|
|
421
|
+
Returns:
|
|
422
|
+
members:
|
|
423
|
+
The member nodes of every row, with zeros in the free rows.
|
|
424
|
+
|
|
425
|
+
Raises:
|
|
426
|
+
ValidationError:
|
|
427
|
+
The hyperedges of the network have more than one size, or none.
|
|
428
|
+
"""
|
|
429
|
+
sizes = sorted({len(hyperedge) for hyperedge in space.hyperedges_})
|
|
430
|
+
if len(sizes) != 1:
|
|
431
|
+
error_msg = (
|
|
432
|
+
f'The variable group {node.path} lies on the hyperedges of a network whose hyperedges have the sizes '
|
|
433
|
+
f'{sizes}. Give the network hyperedges of one size, which every new hyperedge also has.'
|
|
434
|
+
)
|
|
435
|
+
raise ValidationError(error_msg)
|
|
436
|
+
members = np.zeros(((node.members or 0), sizes[0]))
|
|
437
|
+
members[: len(space.hyperedges_)] = np.asarray(space.hyperedges_, dtype=float)
|
|
438
|
+
return members
|
|
439
|
+
|
|
440
|
+
@staticmethod
|
|
441
|
+
def _value_of(node: NodeSpec, variable: str) -> object:
|
|
442
|
+
"""Return the value of a variable of a component, or the default of the element type for a group without it.
|
|
443
|
+
|
|
444
|
+
Args:
|
|
445
|
+
node:
|
|
446
|
+
The component with its place in the tree.
|
|
447
|
+
|
|
448
|
+
variable:
|
|
449
|
+
The name of the variable.
|
|
450
|
+
|
|
451
|
+
Returns:
|
|
452
|
+
value:
|
|
453
|
+
The value given by the user or the default.
|
|
454
|
+
"""
|
|
455
|
+
component = node.component
|
|
456
|
+
if not isinstance(component, GroupElement):
|
|
457
|
+
return getattr(component, variable) if hasattr(component, variable) else default_of(component, variable)
|
|
458
|
+
values = component.values_
|
|
459
|
+
default = default_of(component.element, variable)
|
|
460
|
+
if variable not in values:
|
|
461
|
+
return default
|
|
462
|
+
value = values[variable]
|
|
463
|
+
declaration = declarations_of(component.element, VariableKind.STATE).get(variable)
|
|
464
|
+
if declaration is not None and (declaration.domain is None or declaration.domain is object):
|
|
465
|
+
return value
|
|
466
|
+
shape = np.shape(np.asarray(value))
|
|
467
|
+
space = getattr(component, 'space', None)
|
|
468
|
+
if isinstance(space, LatticeSpace) and shape == space.shape_:
|
|
469
|
+
return np.ravel(np.asarray(value))
|
|
470
|
+
if node.active is not None and shape and shape[0] == node.active:
|
|
471
|
+
rows = (node.members or 0) - node.active
|
|
472
|
+
padding = np.broadcast_to(np.asarray(default, dtype=float), (rows, *shape[1:]))
|
|
473
|
+
return np.concatenate([np.asarray(value, dtype=float), padding])
|
|
474
|
+
return value
|
|
475
|
+
|
|
476
|
+
@staticmethod
|
|
477
|
+
def _per_entry_shape(node: NodeSpec, variable: str, declaration: VariableSpec) -> tuple[int, ...]:
|
|
478
|
+
"""Return the shape of a parameter with one value per entry of a variadic role, after checking its length."""
|
|
479
|
+
roles = declarations_of(node.component_type, VariableKind.ROLE)
|
|
480
|
+
role = declaration.per
|
|
481
|
+
if role not in roles or not roles[role].variadic:
|
|
482
|
+
error_msg = (
|
|
483
|
+
f'{node.path}.{variable} is declared per entry of {role!r}, which is not a variadic role of '
|
|
484
|
+
f'{node.component_type.__name__}. Declare the role with `role(variadic=True)`.'
|
|
485
|
+
)
|
|
486
|
+
raise ValidationError(error_msg)
|
|
487
|
+
entries = len(getattr(node.component, role))
|
|
488
|
+
value = LayoutPass._value_of(node, variable)
|
|
489
|
+
given = len(value) if isinstance(value, list | tuple | np.ndarray) and np.ndim(value) else None
|
|
490
|
+
if given is not None and given != entries:
|
|
491
|
+
error_msg = (
|
|
492
|
+
f'Interaction {node.path} gives its parameter {variable!r} {given} values, but its role {role!r} binds '
|
|
493
|
+
f'{entries} entries. Give one value per entry.'
|
|
494
|
+
)
|
|
495
|
+
raise ValidationError(error_msg)
|
|
496
|
+
return (entries,)
|
|
497
|
+
|
|
498
|
+
@staticmethod
|
|
499
|
+
def _tensor_of(declaration: VariableSpec, space: BaseSpace | None) -> TensorSpec | None:
|
|
500
|
+
"""Return the independent components of a declared tensor state in its space, or `None` for any other state."""
|
|
501
|
+
if declaration.tensor is None or space is None:
|
|
502
|
+
return None
|
|
503
|
+
return TensorSpec(declaration.tensor, int(space.n_dim_)).check()
|
|
504
|
+
|
|
505
|
+
@staticmethod
|
|
506
|
+
def _shape_of(name: str, declaration: VariableSpec, space: BaseSpace | None) -> tuple[int, ...]:
|
|
507
|
+
"""Return the shape of a declared variable in its space.
|
|
508
|
+
|
|
509
|
+
Args:
|
|
510
|
+
name:
|
|
511
|
+
The dotted name of the variable.
|
|
512
|
+
|
|
513
|
+
declaration:
|
|
514
|
+
The declaration of the variable.
|
|
515
|
+
|
|
516
|
+
space:
|
|
517
|
+
The nearest enclosing space.
|
|
518
|
+
|
|
519
|
+
Returns:
|
|
520
|
+
shape:
|
|
521
|
+
`()` for a scalar, `(n_dim,)` for a vector, and the number of independent components for a tensor.
|
|
522
|
+
|
|
523
|
+
Raises:
|
|
524
|
+
SpaceError:
|
|
525
|
+
A vector or a tensor variable has no enclosing space.
|
|
526
|
+
|
|
527
|
+
ValidationError:
|
|
528
|
+
The space dimension is not a positive integer.
|
|
529
|
+
"""
|
|
530
|
+
if not declaration.vector and declaration.tensor is None:
|
|
531
|
+
return ()
|
|
532
|
+
if space is None:
|
|
533
|
+
error_msg = (
|
|
534
|
+
f'{name} is a vector or a tensor, so the system that holds it or one of its parents must have a space.'
|
|
535
|
+
)
|
|
536
|
+
raise SpaceError(error_msg)
|
|
537
|
+
if not EntrySpec._contains(RealSet.open(0, oo), space.n_dim_) or not EntrySpec._contains(ZZ, space.n_dim_):
|
|
538
|
+
error_msg = f'The space of {name} has n_dim = {space.n_dim_!r}, which is not a positive integer.'
|
|
539
|
+
raise ValidationError(error_msg)
|
|
540
|
+
tensor = LayoutPass._tensor_of(declaration, space)
|
|
541
|
+
return (int(space.n_dim_),) if tensor is None else (len(tensor.indices),)
|
|
542
|
+
|
|
543
|
+
@staticmethod
|
|
544
|
+
def _describe(value: object) -> str:
|
|
545
|
+
"""Return the repr of a small value, or its shape for an array with many components."""
|
|
546
|
+
if isinstance(value, np.ndarray | list | tuple) and np.size(value) > _MAX_SHOWN_COMPONENTS:
|
|
547
|
+
return f'an array of shape {np.shape(value)}'
|
|
548
|
+
return repr(value)
|
|
549
|
+
|
|
550
|
+
@staticmethod
|
|
551
|
+
def _flat_value(
|
|
552
|
+
name: str,
|
|
553
|
+
value: object,
|
|
554
|
+
array: npt.NDArray[np.generic],
|
|
555
|
+
shape: tuple[int, ...],
|
|
556
|
+
members: int | None,
|
|
557
|
+
) -> npt.NDArray[np.generic]:
|
|
558
|
+
"""Return an encoded value as flat components of the given shape, member after member for a group."""
|
|
559
|
+
if members is not None:
|
|
560
|
+
return LayoutPass._coerce_group_value(name, value, array, shape, members)
|
|
561
|
+
if not shape and array.ndim == 0:
|
|
562
|
+
return array.reshape(1)
|
|
563
|
+
if shape and array.ndim == 0:
|
|
564
|
+
return np.full(shape, array.item(), dtype=array.dtype).ravel()
|
|
565
|
+
if array.shape != shape:
|
|
566
|
+
error_msg = (
|
|
567
|
+
f'{name} = {LayoutPass._describe(value)} has shape {array.shape}, but the variable has shape {shape}.'
|
|
568
|
+
)
|
|
569
|
+
raise ValidationError(error_msg)
|
|
570
|
+
return array.ravel()
|
|
571
|
+
|
|
572
|
+
@staticmethod
|
|
573
|
+
def _coerce_group_value(
|
|
574
|
+
name: str,
|
|
575
|
+
value: object,
|
|
576
|
+
array: npt.NDArray[np.generic],
|
|
577
|
+
shape: tuple[int, ...],
|
|
578
|
+
members: int,
|
|
579
|
+
) -> npt.NDArray[np.generic]:
|
|
580
|
+
"""Return a group value as flat member-major components, broadcasting shared values."""
|
|
581
|
+
if array.shape in ((), shape):
|
|
582
|
+
return np.broadcast_to(array, (members, *shape)).ravel().copy()
|
|
583
|
+
if array.shape == (members, *shape):
|
|
584
|
+
return array.ravel()
|
|
585
|
+
count = array.shape[0] if array.ndim else 1
|
|
586
|
+
error_msg = (
|
|
587
|
+
f'{name} = {LayoutPass._describe(value)} has {count} values of shape {array.shape[1:]} for a group of '
|
|
588
|
+
f'{members} members of shape {shape}. Give one value per member or one value shared by every member.'
|
|
589
|
+
)
|
|
590
|
+
raise ValidationError(error_msg)
|
|
591
|
+
|
|
592
|
+
@staticmethod
|
|
593
|
+
def _coerce_value(
|
|
594
|
+
name: str,
|
|
595
|
+
value: object,
|
|
596
|
+
shape: tuple[int, ...],
|
|
597
|
+
domain: object,
|
|
598
|
+
members: int | None = None,
|
|
599
|
+
*,
|
|
600
|
+
period: object = None,
|
|
601
|
+
) -> npt.NDArray[np.float64]:
|
|
602
|
+
"""Return a value as a flat float array of the given shape after validating it.
|
|
603
|
+
|
|
604
|
+
Args:
|
|
605
|
+
name:
|
|
606
|
+
The dotted name of the variable.
|
|
607
|
+
|
|
608
|
+
value:
|
|
609
|
+
The value given by the user.
|
|
610
|
+
|
|
611
|
+
shape:
|
|
612
|
+
The shape of the variable.
|
|
613
|
+
|
|
614
|
+
domain:
|
|
615
|
+
The domain of the variable.
|
|
616
|
+
|
|
617
|
+
members:
|
|
618
|
+
The size of the group that holds the variable, or `None` for a single element or an interaction. A group
|
|
619
|
+
value is a per-member array with this first dimension, or one value shared by every member.
|
|
620
|
+
|
|
621
|
+
period:
|
|
622
|
+
The period the values wrap around, or `None`.
|
|
623
|
+
|
|
624
|
+
Returns:
|
|
625
|
+
array:
|
|
626
|
+
The flat components of the value, member after member for a group, with the real and imaginary part of
|
|
627
|
+
every component in a row for the complex domain.
|
|
628
|
+
|
|
629
|
+
Raises:
|
|
630
|
+
ValidationError:
|
|
631
|
+
The value is not numeric, has the wrong shape, or is outside the domain.
|
|
632
|
+
"""
|
|
633
|
+
if not EntrySpec._contains(domain, value):
|
|
634
|
+
error_msg = f'{name} = {LayoutPass._describe(value)} is not in its domain {domain}.'
|
|
635
|
+
if EntrySpec._contains(CC, value):
|
|
636
|
+
error_msg = (
|
|
637
|
+
f'{name} = {LayoutPass._describe(value)} has a nonzero imaginary part, which its domain {domain} '
|
|
638
|
+
f'does not hold. Declare {name.rpartition(".")[2]} with `StateSpec(domain=CC)` to give it complex '
|
|
639
|
+
'values.'
|
|
640
|
+
)
|
|
641
|
+
raise ValidationError(error_msg)
|
|
642
|
+
flat = LayoutPass._flat_value(name, value, EntrySpec._encode(domain, value, period), shape, members)
|
|
643
|
+
return np.ascontiguousarray(flat).view(float) if domain is CC else np.asarray(flat, dtype=float)
|
|
644
|
+
|
|
645
|
+
@staticmethod
|
|
646
|
+
def _noise_processes(nodes: list[NodeSpec]) -> dict[str, WienerProcessSpec]:
|
|
647
|
+
"""Return the Wiener processes that the noise roles of the interactions of a system tree bind, by path.
|
|
648
|
+
|
|
649
|
+
Interactions of one system that bind processes of one label share them, at the path of the label in that system.
|
|
650
|
+
|
|
651
|
+
Args:
|
|
652
|
+
nodes:
|
|
653
|
+
The nodes of the system tree.
|
|
654
|
+
|
|
655
|
+
Returns:
|
|
656
|
+
processes:
|
|
657
|
+
The Wiener processes by path, in the order the interactions first bind them.
|
|
658
|
+
"""
|
|
659
|
+
processes: dict[str, WienerProcessSpec] = {}
|
|
660
|
+
for node in nodes:
|
|
661
|
+
if not isinstance(node.component, BaseInteraction):
|
|
662
|
+
continue
|
|
663
|
+
for name, declaration in declarations_of(type(node.component), VariableKind.ROLE).items():
|
|
664
|
+
value = getattr(node.component, name)
|
|
665
|
+
if declaration.noise and isinstance(value, WienerProcessSpec):
|
|
666
|
+
processes.setdefault(f'{node.scope}{value.label}', value)
|
|
667
|
+
return processes
|