py-neuromodulation 0.0.3__py3-none-any.whl → 0.0.5__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (233) hide show
  1. py_neuromodulation/ConnectivityDecoding/Automated Anatomical Labeling 3 (Rolls 2020).nii +0 -0
  2. py_neuromodulation/ConnectivityDecoding/_get_grid_hull.m +34 -0
  3. py_neuromodulation/ConnectivityDecoding/_get_grid_whole_brain.py +95 -0
  4. py_neuromodulation/ConnectivityDecoding/_helper_write_connectome.py +107 -0
  5. py_neuromodulation/ConnectivityDecoding/mni_coords_cortical_surface.mat +0 -0
  6. py_neuromodulation/ConnectivityDecoding/mni_coords_whole_brain.mat +0 -0
  7. py_neuromodulation/ConnectivityDecoding/rmap_func_all.nii +0 -0
  8. py_neuromodulation/ConnectivityDecoding/rmap_struc.nii +0 -0
  9. py_neuromodulation/FieldTrip.py +589 -589
  10. py_neuromodulation/__init__.py +74 -13
  11. py_neuromodulation/_write_example_dataset_helper.py +83 -65
  12. py_neuromodulation/data/README +6 -0
  13. py_neuromodulation/data/dataset_description.json +8 -0
  14. py_neuromodulation/data/participants.json +32 -0
  15. py_neuromodulation/data/participants.tsv +2 -0
  16. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_coordsystem.json +5 -0
  17. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_electrodes.tsv +11 -0
  18. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_channels.tsv +11 -0
  19. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.eeg +0 -0
  20. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.json +18 -0
  21. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vhdr +35 -0
  22. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vmrk +13 -0
  23. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/sub-testsub_ses-EphysMedOff_scans.tsv +2 -0
  24. py_neuromodulation/grid_cortex.tsv +40 -0
  25. py_neuromodulation/grid_subcortex.tsv +1429 -0
  26. py_neuromodulation/liblsl/libpugixml.so.1.12 +0 -0
  27. py_neuromodulation/liblsl/linux/bionic_amd64/liblsl.1.16.2.so +0 -0
  28. py_neuromodulation/liblsl/linux/bookworm_amd64/liblsl.1.16.2.so +0 -0
  29. py_neuromodulation/liblsl/linux/focal_amd46/liblsl.1.16.2.so +0 -0
  30. py_neuromodulation/liblsl/linux/jammy_amd64/liblsl.1.16.2.so +0 -0
  31. py_neuromodulation/liblsl/linux/jammy_x86/liblsl.1.16.2.so +0 -0
  32. py_neuromodulation/liblsl/linux/noble_amd64/liblsl.1.16.2.so +0 -0
  33. py_neuromodulation/liblsl/macos/amd64/liblsl.1.16.2.dylib +0 -0
  34. py_neuromodulation/liblsl/macos/arm64/liblsl.1.16.0.dylib +0 -0
  35. py_neuromodulation/liblsl/windows/amd64/liblsl.1.16.2.dll +0 -0
  36. py_neuromodulation/liblsl/windows/x86/liblsl.1.16.2.dll +0 -0
  37. py_neuromodulation/nm_IO.py +413 -417
  38. py_neuromodulation/nm_RMAP.py +496 -531
  39. py_neuromodulation/nm_analysis.py +993 -1074
  40. py_neuromodulation/nm_artifacts.py +30 -25
  41. py_neuromodulation/nm_bispectra.py +154 -168
  42. py_neuromodulation/nm_bursts.py +292 -198
  43. py_neuromodulation/nm_coherence.py +251 -205
  44. py_neuromodulation/nm_database.py +149 -0
  45. py_neuromodulation/nm_decode.py +918 -992
  46. py_neuromodulation/nm_define_nmchannels.py +300 -302
  47. py_neuromodulation/nm_features.py +144 -116
  48. py_neuromodulation/nm_filter.py +219 -219
  49. py_neuromodulation/nm_filter_preprocessing.py +79 -91
  50. py_neuromodulation/nm_fooof.py +139 -159
  51. py_neuromodulation/nm_generator.py +45 -37
  52. py_neuromodulation/nm_hjorth_raw.py +52 -73
  53. py_neuromodulation/nm_kalmanfilter.py +71 -58
  54. py_neuromodulation/nm_linelength.py +21 -33
  55. py_neuromodulation/nm_logger.py +66 -0
  56. py_neuromodulation/nm_mne_connectivity.py +149 -112
  57. py_neuromodulation/nm_mnelsl_generator.py +90 -0
  58. py_neuromodulation/nm_mnelsl_stream.py +116 -0
  59. py_neuromodulation/nm_nolds.py +96 -93
  60. py_neuromodulation/nm_normalization.py +173 -214
  61. py_neuromodulation/nm_oscillatory.py +423 -448
  62. py_neuromodulation/nm_plots.py +585 -612
  63. py_neuromodulation/nm_preprocessing.py +83 -0
  64. py_neuromodulation/nm_projection.py +370 -394
  65. py_neuromodulation/nm_rereference.py +97 -95
  66. py_neuromodulation/nm_resample.py +59 -50
  67. py_neuromodulation/nm_run_analysis.py +325 -435
  68. py_neuromodulation/nm_settings.py +289 -68
  69. py_neuromodulation/nm_settings.yaml +244 -0
  70. py_neuromodulation/nm_sharpwaves.py +423 -401
  71. py_neuromodulation/nm_stats.py +464 -480
  72. py_neuromodulation/nm_stream.py +398 -0
  73. py_neuromodulation/nm_stream_abc.py +166 -218
  74. py_neuromodulation/nm_types.py +193 -0
  75. py_neuromodulation/plots/STN_surf.mat +0 -0
  76. py_neuromodulation/plots/Vertices.mat +0 -0
  77. py_neuromodulation/plots/faces.mat +0 -0
  78. py_neuromodulation/plots/grid.mat +0 -0
  79. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.5.dist-info}/METADATA +185 -182
  80. py_neuromodulation-0.0.5.dist-info/RECORD +83 -0
  81. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.5.dist-info}/WHEEL +1 -2
  82. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.5.dist-info/licenses}/LICENSE +21 -21
  83. docs/build/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -68
  84. docs/build/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -233
  85. docs/build/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  86. docs/build/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -97
  87. docs/build/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  88. docs/build/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -192
  89. docs/build/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  90. docs/build/html/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -68
  91. docs/build/html/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -239
  92. docs/build/html/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  93. docs/build/html/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -97
  94. docs/build/html/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  95. docs/build/html/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -192
  96. docs/build/html/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  97. docs/source/_build/html/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -76
  98. docs/source/_build/html/_downloads/0d0d0a76e8f648d5d3cbc47da6351932/plot_real_time_demo.py +0 -97
  99. docs/source/_build/html/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -240
  100. docs/source/_build/html/_downloads/5d73cadc59a8805c47e3b84063afc157/plot_example_BIDS.py +0 -233
  101. docs/source/_build/html/_downloads/7660317fa5a6bfbd12fcca9961457fc4/plot_example_rmap_computing.py +0 -63
  102. docs/source/_build/html/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  103. docs/source/_build/html/_downloads/839e5b319379f7fd9e867deb00fd797f/plot_example_gridPointProjection.py +0 -210
  104. docs/source/_build/html/_downloads/ae8be19afe5e559f011fc9b138968ba0/plot_first_demo.py +0 -192
  105. docs/source/_build/html/_downloads/b8b06cacc17969d3725a0b6f1d7741c5/plot_example_sharpwave_analysis.py +0 -219
  106. docs/source/_build/html/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -121
  107. docs/source/_build/html/_downloads/c31a86c0b68cb4167d968091ace8080d/plot_example_add_feature.py +0 -68
  108. docs/source/_build/html/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  109. docs/source/_build/html/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -189
  110. docs/source/_build/html/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  111. docs/source/auto_examples/plot_0_first_demo.py +0 -189
  112. docs/source/auto_examples/plot_1_example_BIDS.py +0 -240
  113. docs/source/auto_examples/plot_2_example_add_feature.py +0 -76
  114. docs/source/auto_examples/plot_3_example_sharpwave_analysis.py +0 -219
  115. docs/source/auto_examples/plot_4_example_gridPointProjection.py +0 -210
  116. docs/source/auto_examples/plot_5_example_rmap_computing.py +0 -64
  117. docs/source/auto_examples/plot_6_real_time_demo.py +0 -121
  118. docs/source/conf.py +0 -105
  119. examples/plot_0_first_demo.py +0 -189
  120. examples/plot_1_example_BIDS.py +0 -240
  121. examples/plot_2_example_add_feature.py +0 -76
  122. examples/plot_3_example_sharpwave_analysis.py +0 -219
  123. examples/plot_4_example_gridPointProjection.py +0 -210
  124. examples/plot_5_example_rmap_computing.py +0 -64
  125. examples/plot_6_real_time_demo.py +0 -121
  126. packages/realtime_decoding/build/lib/realtime_decoding/__init__.py +0 -4
  127. packages/realtime_decoding/build/lib/realtime_decoding/decoder.py +0 -104
  128. packages/realtime_decoding/build/lib/realtime_decoding/features.py +0 -163
  129. packages/realtime_decoding/build/lib/realtime_decoding/helpers.py +0 -15
  130. packages/realtime_decoding/build/lib/realtime_decoding/run_decoding.py +0 -345
  131. packages/realtime_decoding/build/lib/realtime_decoding/trainer.py +0 -54
  132. packages/tmsi/build/lib/TMSiFileFormats/__init__.py +0 -37
  133. packages/tmsi/build/lib/TMSiFileFormats/file_formats/__init__.py +0 -36
  134. packages/tmsi/build/lib/TMSiFileFormats/file_formats/lsl_stream_writer.py +0 -200
  135. packages/tmsi/build/lib/TMSiFileFormats/file_formats/poly5_file_writer.py +0 -496
  136. packages/tmsi/build/lib/TMSiFileFormats/file_formats/poly5_to_edf_converter.py +0 -236
  137. packages/tmsi/build/lib/TMSiFileFormats/file_formats/xdf_file_writer.py +0 -977
  138. packages/tmsi/build/lib/TMSiFileFormats/file_readers/__init__.py +0 -35
  139. packages/tmsi/build/lib/TMSiFileFormats/file_readers/edf_reader.py +0 -116
  140. packages/tmsi/build/lib/TMSiFileFormats/file_readers/poly5reader.py +0 -294
  141. packages/tmsi/build/lib/TMSiFileFormats/file_readers/xdf_reader.py +0 -229
  142. packages/tmsi/build/lib/TMSiFileFormats/file_writer.py +0 -102
  143. packages/tmsi/build/lib/TMSiPlotters/__init__.py +0 -2
  144. packages/tmsi/build/lib/TMSiPlotters/gui/__init__.py +0 -39
  145. packages/tmsi/build/lib/TMSiPlotters/gui/_plotter_gui.py +0 -234
  146. packages/tmsi/build/lib/TMSiPlotters/gui/plotting_gui.py +0 -440
  147. packages/tmsi/build/lib/TMSiPlotters/plotters/__init__.py +0 -44
  148. packages/tmsi/build/lib/TMSiPlotters/plotters/hd_emg_plotter.py +0 -446
  149. packages/tmsi/build/lib/TMSiPlotters/plotters/impedance_plotter.py +0 -589
  150. packages/tmsi/build/lib/TMSiPlotters/plotters/signal_plotter.py +0 -1326
  151. packages/tmsi/build/lib/TMSiSDK/__init__.py +0 -54
  152. packages/tmsi/build/lib/TMSiSDK/device.py +0 -588
  153. packages/tmsi/build/lib/TMSiSDK/devices/__init__.py +0 -34
  154. packages/tmsi/build/lib/TMSiSDK/devices/saga/TMSi_Device_API.py +0 -1764
  155. packages/tmsi/build/lib/TMSiSDK/devices/saga/__init__.py +0 -34
  156. packages/tmsi/build/lib/TMSiSDK/devices/saga/saga_device.py +0 -1366
  157. packages/tmsi/build/lib/TMSiSDK/devices/saga/saga_types.py +0 -520
  158. packages/tmsi/build/lib/TMSiSDK/devices/saga/xml_saga_config.py +0 -165
  159. packages/tmsi/build/lib/TMSiSDK/error.py +0 -95
  160. packages/tmsi/build/lib/TMSiSDK/sample_data.py +0 -63
  161. packages/tmsi/build/lib/TMSiSDK/sample_data_server.py +0 -99
  162. packages/tmsi/build/lib/TMSiSDK/settings.py +0 -45
  163. packages/tmsi/build/lib/TMSiSDK/tmsi_device.py +0 -111
  164. packages/tmsi/build/lib/__init__.py +0 -4
  165. packages/tmsi/build/lib/apex_sdk/__init__.py +0 -34
  166. packages/tmsi/build/lib/apex_sdk/device/__init__.py +0 -41
  167. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API.py +0 -1009
  168. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API_enums.py +0 -239
  169. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API_structures.py +0 -668
  170. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_device.py +0 -1611
  171. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_dongle.py +0 -38
  172. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_event_reader.py +0 -57
  173. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_channel.py +0 -44
  174. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_config.py +0 -150
  175. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_const.py +0 -36
  176. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_impedance_channel.py +0 -48
  177. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_info.py +0 -108
  178. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/dongle_info.py +0 -39
  179. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/download_measurement.py +0 -77
  180. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/eeg_measurement.py +0 -150
  181. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/impedance_measurement.py +0 -129
  182. packages/tmsi/build/lib/apex_sdk/device/threads/conversion_thread.py +0 -59
  183. packages/tmsi/build/lib/apex_sdk/device/threads/sampling_thread.py +0 -57
  184. packages/tmsi/build/lib/apex_sdk/device/tmsi_channel.py +0 -83
  185. packages/tmsi/build/lib/apex_sdk/device/tmsi_device.py +0 -201
  186. packages/tmsi/build/lib/apex_sdk/device/tmsi_device_enums.py +0 -103
  187. packages/tmsi/build/lib/apex_sdk/device/tmsi_dongle.py +0 -43
  188. packages/tmsi/build/lib/apex_sdk/device/tmsi_event_reader.py +0 -50
  189. packages/tmsi/build/lib/apex_sdk/device/tmsi_measurement.py +0 -118
  190. packages/tmsi/build/lib/apex_sdk/sample_data_server/__init__.py +0 -33
  191. packages/tmsi/build/lib/apex_sdk/sample_data_server/event_data.py +0 -44
  192. packages/tmsi/build/lib/apex_sdk/sample_data_server/sample_data.py +0 -50
  193. packages/tmsi/build/lib/apex_sdk/sample_data_server/sample_data_server.py +0 -136
  194. packages/tmsi/build/lib/apex_sdk/tmsi_errors/error.py +0 -126
  195. packages/tmsi/build/lib/apex_sdk/tmsi_sdk.py +0 -113
  196. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/apex/apex_structure_generator.py +0 -134
  197. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/decorators.py +0 -60
  198. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/logger_filter.py +0 -42
  199. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/singleton.py +0 -42
  200. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/support_functions.py +0 -72
  201. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/tmsi_logger.py +0 -98
  202. py_neuromodulation/nm_EpochStream.py +0 -92
  203. py_neuromodulation/nm_across_patient_decoding.py +0 -927
  204. py_neuromodulation/nm_cohortwrapper.py +0 -435
  205. py_neuromodulation/nm_eval_timing.py +0 -239
  206. py_neuromodulation/nm_features_abc.py +0 -39
  207. py_neuromodulation/nm_stream_offline.py +0 -358
  208. py_neuromodulation/utils/_logging.py +0 -24
  209. py_neuromodulation-0.0.3.dist-info/RECORD +0 -188
  210. py_neuromodulation-0.0.3.dist-info/top_level.txt +0 -5
  211. tests/__init__.py +0 -0
  212. tests/conftest.py +0 -117
  213. tests/test_all_examples.py +0 -10
  214. tests/test_all_features.py +0 -63
  215. tests/test_bispectra.py +0 -70
  216. tests/test_bursts.py +0 -105
  217. tests/test_feature_sampling_rates.py +0 -143
  218. tests/test_fooof.py +0 -16
  219. tests/test_initalization_offline_stream.py +0 -41
  220. tests/test_multiprocessing.py +0 -58
  221. tests/test_nan_values.py +0 -29
  222. tests/test_nm_filter.py +0 -95
  223. tests/test_nm_resample.py +0 -63
  224. tests/test_normalization_settings.py +0 -146
  225. tests/test_notch_filter.py +0 -31
  226. tests/test_osc_features.py +0 -424
  227. tests/test_preprocessing_filter.py +0 -151
  228. tests/test_rereference.py +0 -171
  229. tests/test_sampling.py +0 -57
  230. tests/test_settings_change_after_init.py +0 -76
  231. tests/test_sharpwave.py +0 -165
  232. tests/test_target_channel_add.py +0 -100
  233. tests/test_timing.py +0 -80