pertpy 0.6.0__py3-none-any.whl → 0.8.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pertpy/__init__.py +4 -2
- pertpy/data/__init__.py +66 -1
- pertpy/data/_dataloader.py +28 -26
- pertpy/data/_datasets.py +261 -92
- pertpy/metadata/__init__.py +6 -0
- pertpy/metadata/_cell_line.py +795 -0
- pertpy/metadata/_compound.py +128 -0
- pertpy/metadata/_drug.py +238 -0
- pertpy/metadata/_look_up.py +569 -0
- pertpy/metadata/_metadata.py +70 -0
- pertpy/metadata/_moa.py +125 -0
- pertpy/plot/__init__.py +0 -13
- pertpy/preprocessing/__init__.py +2 -0
- pertpy/preprocessing/_guide_rna.py +89 -6
- pertpy/tools/__init__.py +48 -15
- pertpy/tools/_augur.py +329 -32
- pertpy/tools/_cinemaot.py +145 -6
- pertpy/tools/_coda/_base_coda.py +1237 -116
- pertpy/tools/_coda/_sccoda.py +66 -36
- pertpy/tools/_coda/_tasccoda.py +46 -39
- pertpy/tools/_dialogue.py +180 -77
- pertpy/tools/_differential_gene_expression/__init__.py +20 -0
- pertpy/tools/_differential_gene_expression/_base.py +657 -0
- pertpy/tools/_differential_gene_expression/_checks.py +41 -0
- pertpy/tools/_differential_gene_expression/_dge_comparison.py +86 -0
- pertpy/tools/_differential_gene_expression/_edger.py +125 -0
- pertpy/tools/_differential_gene_expression/_formulaic.py +189 -0
- pertpy/tools/_differential_gene_expression/_pydeseq2.py +95 -0
- pertpy/tools/_differential_gene_expression/_simple_tests.py +162 -0
- pertpy/tools/_differential_gene_expression/_statsmodels.py +72 -0
- pertpy/tools/_distances/_distance_tests.py +29 -24
- pertpy/tools/_distances/_distances.py +584 -98
- pertpy/tools/_enrichment.py +460 -0
- pertpy/tools/_kernel_pca.py +1 -1
- pertpy/tools/_milo.py +406 -49
- pertpy/tools/_mixscape.py +677 -55
- pertpy/tools/_perturbation_space/_clustering.py +10 -3
- pertpy/tools/_perturbation_space/_comparison.py +112 -0
- pertpy/tools/_perturbation_space/_discriminator_classifiers.py +524 -0
- pertpy/tools/_perturbation_space/_perturbation_space.py +146 -52
- pertpy/tools/_perturbation_space/_simple.py +52 -11
- pertpy/tools/_scgen/__init__.py +1 -1
- pertpy/tools/_scgen/_base_components.py +2 -3
- pertpy/tools/_scgen/_scgen.py +706 -0
- pertpy/tools/_scgen/_utils.py +3 -5
- pertpy/tools/decoupler_LICENSE +674 -0
- {pertpy-0.6.0.dist-info → pertpy-0.8.0.dist-info}/METADATA +48 -20
- pertpy-0.8.0.dist-info/RECORD +57 -0
- {pertpy-0.6.0.dist-info → pertpy-0.8.0.dist-info}/WHEEL +1 -1
- pertpy/plot/_augur.py +0 -234
- pertpy/plot/_cinemaot.py +0 -81
- pertpy/plot/_coda.py +0 -1001
- pertpy/plot/_dialogue.py +0 -91
- pertpy/plot/_guide_rna.py +0 -82
- pertpy/plot/_milopy.py +0 -284
- pertpy/plot/_mixscape.py +0 -594
- pertpy/plot/_scgen.py +0 -337
- pertpy/tools/_differential_gene_expression.py +0 -99
- pertpy/tools/_metadata/__init__.py +0 -0
- pertpy/tools/_metadata/_cell_line.py +0 -613
- pertpy/tools/_metadata/_look_up.py +0 -342
- pertpy/tools/_perturbation_space/_discriminator_classifier.py +0 -381
- pertpy/tools/_scgen/_jax_scgen.py +0 -370
- pertpy-0.6.0.dist-info/RECORD +0 -50
- /pertpy/tools/_scgen/{_jax_scgenvae.py → _scgenvae.py} +0 -0
- {pertpy-0.6.0.dist-info → pertpy-0.8.0.dist-info}/licenses/LICENSE +0 -0