oodeel 0.4.0__py3-none-any.whl

oodeel-0.4.0.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: oodeel
+Version: 0.4.0
+Summary: Simple, compact, and hackable post-hoc deep OOD detection for alreadytrained tensorflow or pytorch image classifiers.
+Author: DEEL Core Team
+Author-email: paul.novello@irt-saintexupery.com
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy<=1.26.4
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+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: license-file
+Dynamic: provides-extra
+Dynamic: requires-dist
+Dynamic: summary
+
+
+<!-- Banner section -->
+<div align="center">
+        <picture>
+                <source media="(prefers-color-scheme: dark)" srcset="docs/assets/oodeel_dark.png">
+                <source media="(prefers-color-scheme: light)" srcset="docs/assets/oodeel_light.png">
+                <img src="docs/assets/oodeel_light.png" alt="Library Banner">
+        </picture>
+</div>
+<br>
+
+<!-- Badge section -->
+<div align="center">
+    <a href="#">
+        <img src="https://img.shields.io/badge/python-3.8%2B-blue"></a>
+    <a href="https://github.com/deel-ai/oodeel/actions/workflows/python-linters.yml">
+        <img alt="Flake8" src="https://github.com/deel-ai/oodeel/actions/workflows/python-linters.yml/badge.svg"></a>
+    <a href="https://github.com/deel-ai/oodeel/actions/workflows/python-tests-tf.yml">
+        <img alt="Tests tf" src="https://github.com/deel-ai/oodeel/actions/workflows/python-tests-tf.yml/badge.svg"></a>
+    <a href="https://github.com/deel-ai/oodeel/actions/workflows/python-tests-torch.yml">
+        <img alt="Tests torch" src="https://github.com/deel-ai/oodeel/actions/workflows/python-tests-torch.yml/badge.svg"></a>
+    <a href="https://github.com/deel-ai/oodeel/actions/workflows/python-coverage-shield.yml">
+        <img alt="Coverage" src="https://github.com/deel-ai/oodeel/raw/gh-shields/coverage.svg"></a>
+    <a href="https://github.com/deel-ai/oodeel/blob/master/LICENSE">
+        <img alt="License MIT" src="https://img.shields.io/badge/License-MIT-efefef"></a>
+</div>
+<br>
+
+<!-- Short description of your library -->
+
+<b>Oodeel</b> is a library that performs post-hoc deep OOD (Out-of-Distribution) detection on already trained neural network image classifiers. The philosophy of the library is to favor quality over quantity and to foster easy adoption. As a result, we provide a simple, compact and easily customizable API and carefully integrate and test each proposed baseline into a coherent framework that is designed to enable their use in tensorflow **and** pytorch. You can find the documentation [here](https://deel-ai.github.io/oodeel/).
+
+```python
+from oodeel.methods import MLS
+
+mls = MLS()
+mls.fit(model) # A tensorflow or torch model
+scores, info = mls.score(ds) # ds is a tf.data.Dataset or a torch.DataLoader
+```
+
+# Table of contents
+
+- [Installation](#installation)
+- [Quick Start](#quick-start)
+- [Tutorials](#tutorials)
+- [What's Included](#whats-included)
+- [Development roadmap](#development-roadmap)
+- [Contributing](#contributing)
+- [See Also](#see-also)
+- [Acknowledgments](#acknowledgments)
+- [Creators](#creators)
+- [Citation](#citation)
+- [License](#license)
+
+# Installation
+
+Installation can be done using:
+
+```bash
+pip install oodeel
+```
+
+oodeel requires either `tensorflow` or `pytorch` to be already installed (it will not install them automatically not to mess-up with existing installations). It is regularly tested with:
+
+|Python version|Pytorch version|Tensorflow version|
+|---|---|---|
+|`3.9`| `2.0`| `2.11`|
+|`3.10`|`2.4` | `2.13`|
+|`3.11`| `2.6` | `2.15`|
+
+# Quick Start
+
+Now that *oodeel* is installed, here are some basic examples of what you can do with the available modules. See also the notebooks directory for more advanced examples.
+
+### For benchmarking with one dataset as in-distribution and another as out-of-distribution
+
+Load in-distribution and out-of-distribution datasets.
+
+```python
+from oodeel.datasets import load_data_handler
+
+data_handler = load_data_handler("torch")
+# use backend="tensorflow" if using tensorflow
+# Do not forget to adapt load_kwargs in that case
+
+# Load in-distribution dataset: CIFAR-10
+ds_in = data_handler.load_dataset(
+    "CIFAR10", load_kwargs={"root": data_path, "train": False, "download": True}
+)
+# Load out-of-distribution dataset: SVHN
+ds_out = data_handler.load_dataset(
+    "SVHN", load_kwargs={"root": data_path, "split": "test", "download": True}
+)
+
+# Prepare datasets for forward (requires appropriate preprocess_fn e.g. input normalization)
+ds_in = data_handler.prepare(
+    ds_in, batch_size, preprocess_fn, columns=["input", "label"]
+)
+ds_out = data_handler.prepare(
+    ds_out, batch_size, preprocess_fn, columns=["input", "label"]
+)
+```
+
+### For benchmarking with a classes subset as in-distribution and another classes subset as out-of-distribution
+
+Load a dataset and split it into an in-distribution dataset and ou-of-distribution dataset depending on its label values (a common practice of anomaly detection and open set recognition).
+
+```python
+from oodeel.datasets import load_data_handler
+
+data_handler = load_data_handler("torch") # use backend="tensorflow" if using tensorflow
+
+# Load dataset to split: CIFAR-10
+ds_test = data_handler.load_dataset(
+    "CIFAR10", load_kwargs={"root": data_path, "train": False, "download": True}
+)
+
+in_labels = [0, 1, 2, 3, 4]
+ds_in, ds_out = data_handler.split_by_class(ds_test, in_labels)
+
+# Prepare datasets for forward (requires appropriate preprocess_fn e.g. input normalization)
+ds_in = data_handler.prepare(
+    ds_in, batch_size, preprocess_fn, columns=["input", "label"]
+)
+ds_out = data_handler.prepare(
+    ds_out, batch_size, preprocess_fn, columns=["input", "label"]
+)
+```
+### Run an OOD method
+
+Load an OOD method and use it on an already-trained model
+
+```python
+from oodeel.methods import MLS
+
+mls = MLS()
+mls.fit(model) # Requires a pretrained model
+
+# info_X contains model predictions and labels if available
+scores_in, info_in = mls.score(ds_in)
+scores_out, info_out = mls.score(ds_out)
+```
+
+Evaluate the method
+
+```python
+from oodeel.eval.metrics import bench_metrics
+
+metrics = bench_metrics(
+    (scores_in, scores_out),
+    metrics = ["auroc", "fpr95tpr"],
+    )
+```
+
+### And visualize the results!
+
+2D t-SNE (3D is also available).
+
+```python
+plot_2D_features(
+    model=model,
+    in_dataset=ds_in,
+    out_dataset=ds_out,
+    output_layer_id=-2,
+)
+```
+<p align="center">
+  <img src="docs/assets/tsne.png" alt="TSNE" />
+</p>
+
+Classical histograms and AUROC curve.
+```python
+plot_ood_scores(scores_in, scores_out, log_scale=False)
+plot_roc_curve(scores_in, scores_out)
+```
+<p align="center">
+  <img src="docs/assets/auroc.png" alt="AUROC" />
+</p>
+
+# Tutorials
+
+We propose some tutorials to get familiar with the library and its API. See the Tutorial section of the [doc](https://deel-ai.github.io/oodeel/)
+
+
+# What's Included
+
+The library is based on a class, `OODBaseDetector`, that fits a model and then scores new samples. Some baselines use extra data, so `OODBaseDetector` can also fit additional data if needed. The library uses `OODDataset` to properly load data from different sources and prepare it for OOD detection. It can perform OOD-specific operations like adding extra OOD data for tuning with Outlier Exposure or filters according to label values for anomaly detection or open set recognition benchmarks.
+
+Currently, **oodeel** includes the following baselines:
+
+
+
+|  Name   |  Link   | Venue | Status |
+| --- | --- | --- | --- |
+| MLS | [Open-Set Recognition: a Good Closed-Set Classifier is All You Need?](http://arxiv.org/abs/2110.06207) | ICLR 2022 | avail [tensorflow & torch](docs/pages/getting_started.ipynb) |
+| MSP | [A Baseline for Detecting Misclassified and Out-of-Distribution Examples in Neural Networks](http://arxiv.org/abs/1610.02136) | ICLR 2017 | avail [tensorflow & torch](docs/pages/getting_started.ipynb)|
+| Mahalanobis | [A Simple Unified Framework for Detecting Out-of-Distribution Samples and Adversarial Attacks](http://arxiv.org/abs/1807.03888) | NeurIPS 2018 | avail [tensorflow](docs/notebooks/tensorflow/demo_mahalanobis_tf.ipynb) or  [torch](docs/notebooks/torch/demo_mahalanobis_torch.ipynb)|
+| Energy | [Energy-based Out-of-distribution Detection](http://arxiv.org/abs/2010.03759) | NeurIPS 2020 |avail [tensorflow](docs/notebooks/tensorflow/demo_energy_tf.ipynb) or  [torch](docs/notebooks/torch/demo_energy_torch.ipynb)  |
+| Odin | [Enhancing The Reliability of Out-of-distribution Image Detection in Neural Networks](http://arxiv.org/abs/1706.02690) | ICLR 2018 | avail [tensorflow](docs/notebooks/tensorflow/demo_odin_tf.ipynb) or  [torch](docs/notebooks/torch/demo_odin_torch.ipynb) |
+| DKNN | [Out-of-Distribution Detection with Deep Nearest Neighbors](http://arxiv.org/abs/2204.06507) | ICML 2022 | avail [tensorflow](docs/notebooks/tensorflow/demo_dknn_tf.ipynb) or  [torch](docs/notebooks/torch/demo_dknn_torch.ipynb) |
+| VIM | [ViM: Out-Of-Distribution with Virtual-logit Matching](http://arxiv.org/abs/2203.10807) | CVPR 2022 |avail [tensorflow](docs/notebooks/tensorflow/demo_vim_tf.ipynb) or  [torch](docs/notebooks/torch/demo_vim_torch.ipynb)  |
+| Entropy | [Likelihood Ratios for Out-of-Distribution Detection](https://proceedings.neurips.cc/paper/2019/hash/1e79596878b2320cac26dd792a6c51c9-Abstract.html) | NeurIPS 2019 |avail [tensorflow](docs/notebooks/tensorflow/demo_entropy_tf.ipynb) or  [torch](docs/notebooks/torch/demo_entropy_torch.ipynb)  |
+| ReAct | [ReAct: Out-of-distribution Detection With Rectified Activations](http://arxiv.org/abs/2111.12797) | NeurIPS 2021 | avail [tensorflow](docs/notebooks/tensorflow/demo_react_tf.ipynb) or  [torch](docs/notebooks/torch/demo_react_torch.ipynb) |
+| Gram | [Detecting Out-of-Distribution Examples with Gram Matrices](https://proceedings.mlr.press/v119/sastry20a.html) | ICML 2020 | avail [tensorflow](docs/notebooks/tensorflow/demo_gram_tf.ipynb) or  [torch](docs/notebooks/torch/demo_gram_torch.ipynb) |
+| GEN | [GEN: Pushing the Limits of Softmax-Based Out-of-Distribution Detection](https://openaccess.thecvf.com/content/CVPR2023/html/Liu_GEN_Pushing_the_Limits_of_Softmax-Based_Out-of-Distribution_Detection_CVPR_2023_paper.html) | CVPR 2023 | avail [tensorflow](docs/notebooks/tensorflow/demo_gen_tf.ipynb) or [torch](docs/notebooks/torch/demo_gen_torch.ipynb) |
+| RMDS | [A Simple Fix to Mahalanobis Distance for Improving Near-OOD Detection](https://arxiv.org/abs/2106.09022) | preprint | avail [tensorflow](docs/notebooks/tensorflow/demo_rmds_tf.ipynb) or [torch](docs/notebooks/torch/demo_rmds_torch.ipynb) |
+| SHE | [Out-of-Distribution Detection based on In-Distribution Data Patterns Memorization with Modern Hopfield Energy](https://openreview.net/forum?id=KkazG4lgKL) | ICLR 2023 | avail [tensorflow](docs/notebooks/tensorflow/demo_she_tf.ipynb) or [torch](docs/notebooks/torch/demo_she_torch.ipynb) |
+| ASH | [Extremely Simple Activation Shaping for Out-of-Distribution Detection](https://arxiv.org/abs/2209.09858) | ICLR 2023 | avail [tensorflow](docs/notebooks/tensorflow/demo_ash_tf.ipynb) or [torch](docs/notebooks/torch/demo_ash_torch.ipynb) |
+| SCALE | [Scaling for Training Time and Post-hoc Out-of-distribution Detection Enhancement](https://arxiv.org/abs/2310.00227) | ICLR 2024 | avail [tensorflow](docs/notebooks/tensorflow/demo_scale_tf.ipynb) or [torch](docs/notebooks/torch/demo_scale_torch.ipynb) |
+
+
+
+**Oodeel** also includes standard training functions with data augmentation and learning rate scheduler for toy convnet models or models from `keras.applications` in [tf_training_tools.py](https://github.com/deel-ai/oodeel/tree/master/oodeel/utils/tf_training_tools.py) and `torchvision.models` in [torch_training_tools.py](https://github.com/deel-ai/oodeel/tree/master/oodeel/utils/torch_training_tools.py) files. These functions come in handy for benchmarks like *leave-k-classes-out* that requires retraining models on a subset of dataset classes.
+# Development Roadmap
+
+- [ ] More baselines!
+- [x] A module for thorough visualizations (result plots and feature space visualizations)
+- [ ] Integrate model loading and uploading with [hugginface's transformers](https://huggingface.co/docs/transformers/index) library for pretraining
+- [ ] Extend the library to more diverse tasks like object detection, segmentation, NLP ...
+- [ ] Towards OOD Generalization?
+
+# Contributing
+
+Feel free to propose your ideas or come and contribute with us on the oodeel toolbox! We have a specific document where we describe in a simple way how to make your first pull request: [just here](CONTRIBUTING.md).
+
+# See Also
+
+Other great tools in the field of OOD:
+
+- [OpenOOD](https://github.com/Jingkang50/OpenOOD): Benchmarking Generalized Out-of-Distribution Detection
+- [Pytorch-OOD](https://github.com/kkirchheim/pytorch-ood): Out-of-Distribution (OOD) Detection with Deep Neural Networks based on PyTorch.
+- [ADBench](https://github.com/Minqi824/ADBench): Official Implement of "ADBench: Anomaly Detection Benchmark".
+- [PyOD](https://github.com/yzhao062/pyod): A Comprehensive and Scalable Python Library for Outlier Detection (Anomaly Detection)
+- [Anomalib](https://github.com/openvinotoolkit/anomalib): An anomaly detection library comprising state-of-the-art algorithms and features such as experiment management, hyper-parameter optimization, and edge inference.
+
+More from the DEEL project:
+
+- [Xplique](https://github.com/deel-ai/xplique) a Python library exclusively dedicated to explaining neural networks.
+- [deel-lip](https://github.com/deel-ai/deel-lip) a Python library for training k-Lipschitz neural networks on TF.
+- [Influenciae](https://github.com/deel-ai/influenciae) Python toolkit dedicated to computing influence values for the discovery of potentially problematic samples in a dataset.
+- [deel-torchlip](https://github.com/deel-ai/deel-torchlip) a Python library for training k-Lipschitz neural networks on PyTorch.
+- [DEEL White paper](https://arxiv.org/abs/2103.10529) a summary of the DEEL team on the challenges of certifiable AI and the role of data quality, representativity and explainability for this purpose.
+
+# Acknowledgments
+
+<div align="right">
+  <picture>
+    <source media="(prefers-color-scheme: dark)" srcset="docs/assets/deel_dark.png"  width="25%" align="right">
+    <source media="(prefers-color-scheme: light)" srcset="docs/assets/deel_light.png"  width="25%" align="right">
+    <img src="docs/assets/deel_dark.png" alt="DEEL Logo" width="25%" align="right">
+  </picture>
+</div>
+This project received funding from the French ”Investing for the Future – PIA3” program within the Artificial and Natural Intelligence Toulouse Institute (ANITI). The authors gratefully acknowledge the support of the <a href="https://www.deel.ai/"> DEEL </a>, a research project jointly conducted in France and Quebec.
+
+# Creators
+
+The library was created by Paul Novello to streamline DEEL research on post-hoc deep OOD methods and foster their adoption by DEEL industrial partners. He was soon joined by Yann Pequignot, Yannick Prudent, Corentin Friedrich and Matthieu Le Goff.
+
+# Citation
+
+If you use OODEEL for your research project, please consider citing:
+```
+@misc{oodeel,
+  author = {Novello, Paul and Prudent, Yannick and Friedrich, Corentin and Pequignot, Yann and Le Goff, Matthieu},
+  title = {OODEEL, a simple, compact, and hackable post-hoc deep OOD detection for already trained tensorflow or pytorch image classifiers.},
+  year = {2023},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  howpublished = {\url{https://github.com/deel-ai/oodeel}},
+}
+```
+# License
+
+The package is released under [MIT license](LICENSE).

oodeel-0.4.0.dist-info/RECORD

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+oodeel-0.4.0.dist-info/RECORD,,

oodeel-0.4.0.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: setuptools (80.9.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

oodeel-0.4.0.dist-info/licenses/LICENSE

@@ -0,0 +1,21 @@
+Copyright 2020 © IRT Antoine de Saint Exupéry et Université Paul Sabatier Toulouse III - All rights reserved. DEEL is a research program operated by IVADO, IRT Saint Exupéry, CRIAQ and ANITI - https://www.deel.ai/
+
+The MIT License (MIT)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

oodeel-0.4.0.dist-info/top_level.txt

@@ -0,0 +1,2 @@
+oodeel
+tests

tests/__init__.py

@@ -0,0 +1,22 @@
+# -*- coding: utf-8 -*-
+# Copyright IRT Antoine de Saint Exupéry et Université Paul Sabatier Toulouse III - All
+# rights reserved. DEEL is a research program operated by IVADO, IRT Saint Exupéry,
+# CRIAQ and ANITI - https://www.deel.ai/
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.

tests/tests_tensorflow/__init__.py

@@ -0,0 +1,37 @@
+# -*- coding: utf-8 -*-
+# Copyright IRT Antoine de Saint Exupéry et Université Paul Sabatier Toulouse III - All
+# rights reserved. DEEL is a research program operated by IVADO, IRT Saint Exupéry,
+# CRIAQ and ANITI - https://www.deel.ai/
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+from .tf_methods_utils import eval_detector_on_blobs
+from .tools_tf import almost_equal
+from .tools_tf import generate_data
+from .tools_tf import generate_data_tf
+from .tools_tf import generate_model
+from .tools_tf import generate_regression_model
+
+__all__ = [
+    "eval_detector_on_blobs",
+    "almost_equal",
+    "generate_data",
+    "generate_data_tf",
+    "generate_model",
+    "generate_regression_model",
+]