multipers 2.2.3__cp312-cp312-win_amd64.whl → 2.3.0__cp312-cp312-win_amd64.whl

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  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/filtrations/filtrations.py +289 -0
  15. multipers/filtrations.pxd +224 -224
  16. multipers/function_rips.cp312-win_amd64.pyd +0 -0
  17. multipers/function_rips.pyx +105 -105
  18. multipers/grids.cp312-win_amd64.pyd +0 -0
  19. multipers/grids.pyx +350 -350
  20. multipers/gudhi/Persistence_slices_interface.h +132 -132
  21. multipers/gudhi/Simplex_tree_interface.h +239 -245
  22. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  23. multipers/gudhi/cubical_to_boundary.h +59 -59
  24. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  27. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  28. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  29. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  30. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  31. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  32. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  34. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  35. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  36. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  37. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  38. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  39. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  40. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  41. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  42. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  43. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  44. multipers/gudhi/gudhi/Off_reader.h +173 -173
  45. multipers/gudhi/gudhi/One_critical_filtration.h +1432 -1431
  46. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  48. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  49. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  50. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  51. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  52. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  53. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  54. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  55. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  56. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  61. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  75. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  77. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  80. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  81. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  82. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  83. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  84. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  85. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  86. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  90. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  91. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  92. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  93. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  94. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  95. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  96. multipers/gudhi/gudhi/distance_functions.h +62 -62
  97. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  98. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  99. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  100. multipers/gudhi/gudhi/reader_utils.h +367 -367
  101. multipers/gudhi/mma_interface_coh.h +256 -255
  102. multipers/gudhi/mma_interface_h0.h +223 -231
  103. multipers/gudhi/mma_interface_matrix.h +284 -282
  104. multipers/gudhi/naive_merge_tree.h +536 -575
  105. multipers/gudhi/scc_io.h +310 -289
  106. multipers/gudhi/truc.h +890 -888
  107. multipers/io.cp312-win_amd64.pyd +0 -0
  108. multipers/io.pyx +711 -711
  109. multipers/ml/accuracies.py +90 -90
  110. multipers/ml/convolutions.py +520 -520
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp312-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -4
  122. multipers/mma_structures.pyx.tp +1085 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2296 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp312-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +216 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp312-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp312-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +18 -15
  156. multipers/simplex_tree_multi.pyx.tp +1939 -1935
  157. multipers/slicer.cp312-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +81 -20
  159. multipers/slicer.pxd.tp +215 -214
  160. multipers/slicer.pyx +1091 -308
  161. multipers/slicer.pyx.tp +924 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/METADATA +21 -11
  170. multipers-2.3.0.dist-info/RECORD +182 -0
  171. multipers/tests/test_diff_helper.py +0 -73
  172. multipers/tests/test_hilbert_function.py +0 -82
  173. multipers/tests/test_mma.py +0 -83
  174. multipers/tests/test_point_clouds.py +0 -49
  175. multipers/tests/test_python-cpp_conversion.py +0 -82
  176. multipers/tests/test_signed_betti.py +0 -181
  177. multipers/tests/test_signed_measure.py +0 -89
  178. multipers/tests/test_simplextreemulti.py +0 -221
  179. multipers/tests/test_slicer.py +0 -221
  180. multipers-2.2.3.dist-info/RECORD +0 -189
  181. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/WHEEL +0 -0
  182. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/top_level.txt +0 -0
@@ -1,463 +1,463 @@
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- /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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- * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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- * Author(s): Clément Maria
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- *
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- * Copyright (C) 2014 Inria
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- *
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- * Modification(s):
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- * - 2022/04 Vincent Rouvreau: Add Simplex_tree_boundary_opposite_vertex_simplex_iterator for alpha and cech purpose
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- * - YYYY/MM Author: Description of the modification
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- */
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-
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- #ifndef SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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- #define SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
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-
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- #include <gudhi/Debug_utils.h>
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-
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- #include <boost/iterator/iterator_facade.hpp>
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-
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- #include <vector>
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- #include <utility> // for std::pair
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-
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- namespace Gudhi {
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-
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- /** \addtogroup simplex_tree
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- * Iterators and range types for the Simplex_tree.
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- * @{
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- */
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-
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- /** \brief Iterator over the vertices of a simplex
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- * in a SimplexTree.
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- *
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- * Forward iterator, 'value_type' is SimplexTree::Vertex_handle.*/
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- template<class SimplexTree>
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- class Simplex_tree_simplex_vertex_iterator : public boost::iterator_facade<
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- Simplex_tree_simplex_vertex_iterator<SimplexTree>,
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- typename SimplexTree::Vertex_handle const, boost::forward_traversal_tag,
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- typename SimplexTree::Vertex_handle const> {
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- public:
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- typedef typename SimplexTree::Simplex_handle Simplex_handle;
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- typedef typename SimplexTree::Siblings Siblings;
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- typedef typename SimplexTree::Vertex_handle Vertex_handle;
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-
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- explicit Simplex_tree_simplex_vertex_iterator(SimplexTree const* st)
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- : // any end() iterator
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- sib_(nullptr),
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- v_(st->null_vertex()) {
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- }
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-
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- Simplex_tree_simplex_vertex_iterator(SimplexTree const* st, Simplex_handle sh)
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- : sib_(st->self_siblings(sh)),
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- v_(sh->first) {
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- }
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-
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- private:
55
- friend class boost::iterator_core_access;
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-
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- bool equal(Simplex_tree_simplex_vertex_iterator const &other) const {
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- return sib_ == other.sib_ && v_ == other.v_;
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- }
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-
61
- Vertex_handle const& dereference() const {
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- return v_;
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- }
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-
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- void increment() {
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- v_ = sib_->parent();
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- sib_ = sib_->oncles();
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- }
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-
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- Siblings * sib_;
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- Vertex_handle v_;
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- };
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-
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- /*---------------------------------------------------------------------------*/
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- /** \brief Iterator over the simplices of the boundary of a
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- * simplex.
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- *
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- * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
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- template<class SimplexTree>
80
- class Simplex_tree_boundary_simplex_iterator : public boost::iterator_facade<
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- Simplex_tree_boundary_simplex_iterator<SimplexTree>,
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- typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
83
- public:
84
- using Simplex_handle = typename SimplexTree::Simplex_handle;
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- using Vertex_handle = typename SimplexTree::Vertex_handle;
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- using Siblings = typename SimplexTree::Siblings;
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- using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
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-
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- // For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is overwritten.
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- Simplex_tree_boundary_simplex_iterator()
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- : sib_(nullptr),
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- st_(nullptr) {
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- }
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-
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- // any end() iterator
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- explicit Simplex_tree_boundary_simplex_iterator(SimplexTree * st)
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- : last_(st->null_vertex()),
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- next_(st->null_vertex()),
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- sib_(nullptr),
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- sh_(st->null_simplex()),
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- st_(st) {
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- }
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-
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- template<class SimplexHandle>
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- Simplex_tree_boundary_simplex_iterator(SimplexTree * st, SimplexHandle sh)
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- : last_(sh->first),
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- next_(st->null_vertex()),
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- sib_(nullptr),
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- sh_(st->null_simplex()),
110
- st_(st) {
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- // Only check once at the beginning instead of for every increment, as this is expensive.
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- if constexpr (SimplexTree::Options::contiguous_vertices)
113
- GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
114
- Siblings * sib = st->self_siblings(sh);
115
- next_ = sib->parent();
116
- sib_ = sib->oncles();
117
- if (sib_ != nullptr) {
118
- if constexpr (SimplexTree::Options::contiguous_vertices &&
119
- !SimplexTree::Options::stable_simplex_handles)
120
- {
121
- if (sib_->oncles() == nullptr) // Only relevant for edges
122
- sh_ = sib_->members_.begin() + next_;
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- else
124
- sh_ = sib_->find(next_);
125
- } else {
126
- sh_ = sib_->find(next_);
127
- }
128
- }
129
- }
130
-
131
- private:
132
- friend class boost::iterator_core_access;
133
- // valid when iterating along the SAME boundary.
134
- bool equal(Simplex_tree_boundary_simplex_iterator const& other) const {
135
- return sh_ == other.sh_;
136
- }
137
-
138
- Simplex_handle const& dereference() const {
139
- assert(sh_ != st_->null_simplex());
140
- return sh_;
141
- }
142
-
143
- void increment() {
144
- if (sib_ == nullptr) {
145
- sh_ = st_->null_simplex();
146
- return;
147
- }
148
-
149
- Siblings * for_sib = sib_;
150
- Siblings * new_sib = sib_->oncles();
151
- auto rit = suffix_.rbegin();
152
- if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
153
- if (new_sib == nullptr) {
154
- // We reached the root, use a short-cut to find a vertex.
155
- if (rit == suffix_.rend()) {
156
- // Segment, this vertex is the last boundary simplex
157
- sh_ = for_sib->members_.begin() + last_;
158
- sib_ = nullptr;
159
- return;
160
- } else {
161
- // Dim >= 2, initial step of the descent
162
- sh_ = for_sib->members_.begin() + *rit;
163
- for_sib = sh_->second.children();
164
- ++rit;
165
- }
166
- }
167
- }
168
-
169
- for (; rit != suffix_.rend(); ++rit) {
170
- sh_ = for_sib->find(*rit);
171
- for_sib = sh_->second.children();
172
- }
173
- sh_ = for_sib->find(last_); // sh_ points to the right simplex now
174
- suffix_.push_back(next_);
175
- next_ = sib_->parent();
176
- sib_ = new_sib;
177
- }
178
-
179
- // Most of the storage should be moved to the range, iterators should be light.
180
- Vertex_handle last_; // last vertex of the simplex
181
- Vertex_handle next_; // next vertex to push in suffix_
182
- Static_vertex_vector suffix_;
183
- Siblings * sib_; // where the next search will start from
184
- Simplex_handle sh_; // current Simplex_handle in the boundary
185
- SimplexTree * st_; // simplex containing the simplicial complex
186
- };
187
-
188
- /** \brief Iterator over the simplices of the boundary of a simplex and their opposite vertices.
189
- *
190
- * Forward iterator, value_type is std::pair<SimplexTree::Simplex_handle, SimplexTree::Vertex_handle>.*/
191
- template<class SimplexTree>
192
- class Simplex_tree_boundary_opposite_vertex_simplex_iterator : public boost::iterator_facade<
193
- Simplex_tree_boundary_opposite_vertex_simplex_iterator<SimplexTree>,
194
- std::pair<typename SimplexTree::Simplex_handle, typename SimplexTree::Vertex_handle> const, boost::forward_traversal_tag> {
195
- public:
196
- using Simplex_handle = typename SimplexTree::Simplex_handle;
197
- using Vertex_handle = typename SimplexTree::Vertex_handle;
198
- using Siblings = typename SimplexTree::Siblings;
199
- using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
200
-
201
- // For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is
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- // overwritten.
203
- Simplex_tree_boundary_opposite_vertex_simplex_iterator()
204
- : sib_(nullptr),
205
- st_(nullptr) {
206
- }
207
-
208
- // any end() iterator
209
- explicit Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st)
210
- : last_(st->null_vertex()),
211
- next_(st->null_vertex()),
212
- sib_(nullptr),
213
- baov_(st->null_simplex(), st->null_vertex()),
214
- st_(st) {
215
- }
216
-
217
- template<class SimplexHandle>
218
- Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st, SimplexHandle sh)
219
- : last_(sh->first),
220
- next_(st->null_vertex()),
221
- sib_(nullptr),
222
- baov_(st->null_simplex(), sh->first),
223
- st_(st) {
224
- // Only check once at the beginning instead of for every increment, as this is expensive.
225
- if constexpr (SimplexTree::Options::contiguous_vertices)
226
- GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
227
- Siblings * sib = st->self_siblings(sh);
228
- next_ = sib->parent();
229
- sib_ = sib->oncles();
230
- if (sib_ != nullptr) {
231
- if constexpr (SimplexTree::Options::contiguous_vertices &&
232
- !SimplexTree::Options::stable_simplex_handles) {
233
- if (sib_->oncles() == nullptr)
234
- // Only relevant for edges
235
- baov_.first = sib_->members_.begin() + next_;
236
- else
237
- baov_.first = sib_->find(next_);
238
- } else {
239
- baov_.first = sib_->find(next_);
240
- }
241
- }
242
- }
243
-
244
- private:
245
- friend class boost::iterator_core_access;
246
-
247
- // valid when iterating along the SAME boundary.
248
- bool equal(Simplex_tree_boundary_opposite_vertex_simplex_iterator const& other) const {
249
- return (baov_.first == other.baov_.first);
250
- }
251
-
252
- std::pair<Simplex_handle, Vertex_handle> const& dereference() const {
253
- return baov_;
254
- }
255
-
256
- void increment() {
257
- if (sib_ == nullptr) {
258
- baov_.first = st_->null_simplex();
259
- return; // ------>>
260
- }
261
- Siblings * for_sib = sib_;
262
- Siblings * new_sib = sib_->oncles();
263
- auto rit = suffix_.rbegin();
264
- if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
265
- if (new_sib == nullptr) {
266
- // We reached the root, use a short-cut to find a vertex.
267
- if (rit == suffix_.rend()) {
268
- baov_.second = baov_.first->first;
269
- // Segment, this vertex is the last boundary simplex
270
- baov_.first = for_sib->members_.begin() + last_;
271
- sib_ = nullptr;
272
- return;
273
- } else {
274
- // Dim >= 2, initial step of the descent
275
- baov_.first = for_sib->members_.begin() + *rit;
276
- for_sib = baov_.first->second.children();
277
- ++rit;
278
- }
279
- }
280
- }
281
-
282
- for (; rit != suffix_.rend(); ++rit) {
283
- baov_.first = for_sib->find(*rit);
284
- for_sib = baov_.first->second.children();
285
- }
286
- baov_.first = for_sib->find(last_); // baov_.first points to the right simplex now
287
- suffix_.push_back(next_);
288
- next_ = sib_->parent();
289
- sib_ = new_sib;
290
- baov_.second = suffix_.back();
291
- }
292
-
293
- // Most of the storage should be moved to the range, iterators should be light.
294
- Vertex_handle last_; // last vertex of the simplex
295
- Vertex_handle next_; // next vertex to push in suffix_
296
- Static_vertex_vector suffix_;
297
- Siblings * sib_; // where the next search will start from
298
- std::pair<Simplex_handle, Vertex_handle> baov_; // a pair containing the current Simplex_handle in the boundary and its opposite vertex
299
- SimplexTree * st_; // simplex containing the simplicial complex
300
- };
301
-
302
- /*---------------------------------------------------------------------------*/
303
- /** \brief Iterator over the simplices of a simplicial complex.
304
- *
305
- * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
306
- template<class SimplexTree>
307
- class Simplex_tree_complex_simplex_iterator : public boost::iterator_facade<
308
- Simplex_tree_complex_simplex_iterator<SimplexTree>,
309
- typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
310
- public:
311
- typedef typename SimplexTree::Simplex_handle Simplex_handle;
312
- typedef typename SimplexTree::Siblings Siblings;
313
- typedef typename SimplexTree::Vertex_handle Vertex_handle;
314
-
315
- // any end() iterator
316
- Simplex_tree_complex_simplex_iterator()
317
- : sib_(nullptr),
318
- st_(nullptr) {
319
- }
320
-
321
- explicit Simplex_tree_complex_simplex_iterator(SimplexTree * st)
322
- : sib_(nullptr),
323
- st_(st) {
324
- if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
325
- st_ = nullptr;
326
- } else {
327
- sh_ = st->root()->members().begin();
328
- sib_ = st->root();
329
- while (st->has_children(sh_)) {
330
- sib_ = sh_->second.children();
331
- sh_ = sib_->members().begin();
332
- }
333
- }
334
- }
335
- private:
336
- friend class boost::iterator_core_access;
337
-
338
- // valid when iterating along the SAME boundary.
339
- bool equal(Simplex_tree_complex_simplex_iterator const& other) const {
340
- if (other.st_ == nullptr) {
341
- return (st_ == nullptr);
342
- }
343
- if (st_ == nullptr) {
344
- return false;
345
- }
346
- return (&(sh_->second) == &(other.sh_->second));
347
- }
348
-
349
- Simplex_handle const& dereference() const {
350
- return sh_;
351
- }
352
-
353
- // Depth first traversal.
354
- void increment() {
355
- ++sh_;
356
- if (sh_ == sib_->members().end()) {
357
- if (sib_->oncles() == nullptr) {
358
- st_ = nullptr;
359
- return;
360
- } // reach the end
361
- sh_ = sib_->oncles()->members().find(sib_->parent());
362
- sib_ = sib_->oncles();
363
- return;
364
- }
365
- while (st_->has_children(sh_)) {
366
- sib_ = sh_->second.children();
367
- sh_ = sib_->members().begin();
368
- }
369
- }
370
-
371
- Simplex_handle sh_;
372
- Siblings * sib_;
373
- SimplexTree * st_;
374
- };
375
-
376
- /** \brief Iterator over the simplices of the skeleton of a given
377
- * dimension of the simplicial complex.
378
- *
379
- * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
380
- template<class SimplexTree>
381
- class Simplex_tree_skeleton_simplex_iterator : public boost::iterator_facade<
382
- Simplex_tree_skeleton_simplex_iterator<SimplexTree>,
383
- typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
384
- public:
385
- typedef typename SimplexTree::Simplex_handle Simplex_handle;
386
- typedef typename SimplexTree::Siblings Siblings;
387
- typedef typename SimplexTree::Vertex_handle Vertex_handle;
388
-
389
- // any end() iterator
390
- Simplex_tree_skeleton_simplex_iterator()
391
- : sib_(nullptr),
392
- st_(nullptr),
393
- dim_skel_(0),
394
- curr_dim_(0) {
395
- }
396
-
397
- Simplex_tree_skeleton_simplex_iterator(SimplexTree * st, int dim_skel)
398
- : sib_(nullptr),
399
- st_(st),
400
- dim_skel_(dim_skel),
401
- curr_dim_(0) {
402
- if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
403
- st_ = nullptr;
404
- } else {
405
- sh_ = st->root()->members().begin();
406
- sib_ = st->root();
407
- while (st->has_children(sh_) && curr_dim_ < dim_skel_) {
408
- sib_ = sh_->second.children();
409
- sh_ = sib_->members().begin();
410
- ++curr_dim_;
411
- }
412
- }
413
- }
414
- private:
415
- friend class boost::iterator_core_access;
416
-
417
- // valid when iterating along the SAME boundary.
418
- bool equal(Simplex_tree_skeleton_simplex_iterator const& other) const {
419
- if (other.st_ == nullptr) {
420
- return (st_ == nullptr);
421
- }
422
- if (st_ == nullptr) {
423
- return false;
424
- }
425
- return (&(sh_->second) == &(other.sh_->second));
426
- }
427
-
428
- Simplex_handle const& dereference() const {
429
- return sh_;
430
- }
431
-
432
- // Depth first traversal of the skeleton.
433
- void increment() {
434
- ++sh_;
435
- if (sh_ == sib_->members().end()) {
436
- if (sib_->oncles() == nullptr) {
437
- st_ = nullptr;
438
- return;
439
- } // reach the end
440
- sh_ = sib_->oncles()->members().find(sib_->parent());
441
- sib_ = sib_->oncles();
442
- --curr_dim_;
443
- return;
444
- }
445
- while (st_->has_children(sh_) && curr_dim_ < dim_skel_) {
446
- sib_ = sh_->second.children();
447
- sh_ = sib_->members().begin();
448
- ++curr_dim_;
449
- }
450
- }
451
-
452
- Simplex_handle sh_;
453
- Siblings * sib_;
454
- SimplexTree * st_;
455
- int dim_skel_;
456
- int curr_dim_;
457
- };
458
-
459
- /** @}*/ // end addtogroup simplex_tree
460
-
461
- } // namespace Gudhi
462
-
463
- #endif // SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
1
+ /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
3
+ * Author(s): Clément Maria
4
+ *
5
+ * Copyright (C) 2014 Inria
6
+ *
7
+ * Modification(s):
8
+ * - 2022/04 Vincent Rouvreau: Add Simplex_tree_boundary_opposite_vertex_simplex_iterator for alpha and cech purpose
9
+ * - YYYY/MM Author: Description of the modification
10
+ */
11
+
12
+ #ifndef SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
13
+ #define SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_
14
+
15
+ #include <gudhi/Debug_utils.h>
16
+
17
+ #include <boost/iterator/iterator_facade.hpp>
18
+
19
+ #include <vector>
20
+ #include <utility> // for std::pair
21
+
22
+ namespace Gudhi {
23
+
24
+ /** \addtogroup simplex_tree
25
+ * Iterators and range types for the Simplex_tree.
26
+ * @{
27
+ */
28
+
29
+ /** \brief Iterator over the vertices of a simplex
30
+ * in a SimplexTree.
31
+ *
32
+ * Forward iterator, 'value_type' is SimplexTree::Vertex_handle.*/
33
+ template<class SimplexTree>
34
+ class Simplex_tree_simplex_vertex_iterator : public boost::iterator_facade<
35
+ Simplex_tree_simplex_vertex_iterator<SimplexTree>,
36
+ typename SimplexTree::Vertex_handle const, boost::forward_traversal_tag,
37
+ typename SimplexTree::Vertex_handle const> {
38
+ public:
39
+ typedef typename SimplexTree::Simplex_handle Simplex_handle;
40
+ typedef typename SimplexTree::Siblings Siblings;
41
+ typedef typename SimplexTree::Vertex_handle Vertex_handle;
42
+
43
+ explicit Simplex_tree_simplex_vertex_iterator(SimplexTree const* st)
44
+ : // any end() iterator
45
+ sib_(nullptr),
46
+ v_(st->null_vertex()) {
47
+ }
48
+
49
+ Simplex_tree_simplex_vertex_iterator(SimplexTree const* st, Simplex_handle sh)
50
+ : sib_(st->self_siblings(sh)),
51
+ v_(sh->first) {
52
+ }
53
+
54
+ private:
55
+ friend class boost::iterator_core_access;
56
+
57
+ bool equal(Simplex_tree_simplex_vertex_iterator const &other) const {
58
+ return sib_ == other.sib_ && v_ == other.v_;
59
+ }
60
+
61
+ Vertex_handle const& dereference() const {
62
+ return v_;
63
+ }
64
+
65
+ void increment() {
66
+ v_ = sib_->parent();
67
+ sib_ = sib_->oncles();
68
+ }
69
+
70
+ Siblings * sib_;
71
+ Vertex_handle v_;
72
+ };
73
+
74
+ /*---------------------------------------------------------------------------*/
75
+ /** \brief Iterator over the simplices of the boundary of a
76
+ * simplex.
77
+ *
78
+ * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
79
+ template<class SimplexTree>
80
+ class Simplex_tree_boundary_simplex_iterator : public boost::iterator_facade<
81
+ Simplex_tree_boundary_simplex_iterator<SimplexTree>,
82
+ typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
83
+ public:
84
+ using Simplex_handle = typename SimplexTree::Simplex_handle;
85
+ using Vertex_handle = typename SimplexTree::Vertex_handle;
86
+ using Siblings = typename SimplexTree::Siblings;
87
+ using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
88
+
89
+ // For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is overwritten.
90
+ Simplex_tree_boundary_simplex_iterator()
91
+ : sib_(nullptr),
92
+ st_(nullptr) {
93
+ }
94
+
95
+ // any end() iterator
96
+ explicit Simplex_tree_boundary_simplex_iterator(SimplexTree * st)
97
+ : last_(st->null_vertex()),
98
+ next_(st->null_vertex()),
99
+ sib_(nullptr),
100
+ sh_(st->null_simplex()),
101
+ st_(st) {
102
+ }
103
+
104
+ template<class SimplexHandle>
105
+ Simplex_tree_boundary_simplex_iterator(SimplexTree * st, SimplexHandle sh)
106
+ : last_(sh->first),
107
+ next_(st->null_vertex()),
108
+ sib_(nullptr),
109
+ sh_(st->null_simplex()),
110
+ st_(st) {
111
+ // Only check once at the beginning instead of for every increment, as this is expensive.
112
+ if constexpr (SimplexTree::Options::contiguous_vertices)
113
+ GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
114
+ Siblings * sib = st->self_siblings(sh);
115
+ next_ = sib->parent();
116
+ sib_ = sib->oncles();
117
+ if (sib_ != nullptr) {
118
+ if constexpr (SimplexTree::Options::contiguous_vertices &&
119
+ !SimplexTree::Options::stable_simplex_handles)
120
+ {
121
+ if (sib_->oncles() == nullptr) // Only relevant for edges
122
+ sh_ = sib_->members_.begin() + next_;
123
+ else
124
+ sh_ = sib_->find(next_);
125
+ } else {
126
+ sh_ = sib_->find(next_);
127
+ }
128
+ }
129
+ }
130
+
131
+ private:
132
+ friend class boost::iterator_core_access;
133
+ // valid when iterating along the SAME boundary.
134
+ bool equal(Simplex_tree_boundary_simplex_iterator const& other) const {
135
+ return sh_ == other.sh_;
136
+ }
137
+
138
+ Simplex_handle const& dereference() const {
139
+ assert(sh_ != st_->null_simplex());
140
+ return sh_;
141
+ }
142
+
143
+ void increment() {
144
+ if (sib_ == nullptr) {
145
+ sh_ = st_->null_simplex();
146
+ return;
147
+ }
148
+
149
+ Siblings * for_sib = sib_;
150
+ Siblings * new_sib = sib_->oncles();
151
+ auto rit = suffix_.rbegin();
152
+ if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
153
+ if (new_sib == nullptr) {
154
+ // We reached the root, use a short-cut to find a vertex.
155
+ if (rit == suffix_.rend()) {
156
+ // Segment, this vertex is the last boundary simplex
157
+ sh_ = for_sib->members_.begin() + last_;
158
+ sib_ = nullptr;
159
+ return;
160
+ } else {
161
+ // Dim >= 2, initial step of the descent
162
+ sh_ = for_sib->members_.begin() + *rit;
163
+ for_sib = sh_->second.children();
164
+ ++rit;
165
+ }
166
+ }
167
+ }
168
+
169
+ for (; rit != suffix_.rend(); ++rit) {
170
+ sh_ = for_sib->find(*rit);
171
+ for_sib = sh_->second.children();
172
+ }
173
+ sh_ = for_sib->find(last_); // sh_ points to the right simplex now
174
+ suffix_.push_back(next_);
175
+ next_ = sib_->parent();
176
+ sib_ = new_sib;
177
+ }
178
+
179
+ // Most of the storage should be moved to the range, iterators should be light.
180
+ Vertex_handle last_; // last vertex of the simplex
181
+ Vertex_handle next_; // next vertex to push in suffix_
182
+ Static_vertex_vector suffix_;
183
+ Siblings * sib_; // where the next search will start from
184
+ Simplex_handle sh_; // current Simplex_handle in the boundary
185
+ SimplexTree * st_; // simplex containing the simplicial complex
186
+ };
187
+
188
+ /** \brief Iterator over the simplices of the boundary of a simplex and their opposite vertices.
189
+ *
190
+ * Forward iterator, value_type is std::pair<SimplexTree::Simplex_handle, SimplexTree::Vertex_handle>.*/
191
+ template<class SimplexTree>
192
+ class Simplex_tree_boundary_opposite_vertex_simplex_iterator : public boost::iterator_facade<
193
+ Simplex_tree_boundary_opposite_vertex_simplex_iterator<SimplexTree>,
194
+ std::pair<typename SimplexTree::Simplex_handle, typename SimplexTree::Vertex_handle> const, boost::forward_traversal_tag> {
195
+ public:
196
+ using Simplex_handle = typename SimplexTree::Simplex_handle;
197
+ using Vertex_handle = typename SimplexTree::Vertex_handle;
198
+ using Siblings = typename SimplexTree::Siblings;
199
+ using Static_vertex_vector = typename SimplexTree::Static_vertex_vector;
200
+
201
+ // For cython purpose only. The object it initializes should be overwritten ASAP and never used before it is
202
+ // overwritten.
203
+ Simplex_tree_boundary_opposite_vertex_simplex_iterator()
204
+ : sib_(nullptr),
205
+ st_(nullptr) {
206
+ }
207
+
208
+ // any end() iterator
209
+ explicit Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st)
210
+ : last_(st->null_vertex()),
211
+ next_(st->null_vertex()),
212
+ sib_(nullptr),
213
+ baov_(st->null_simplex(), st->null_vertex()),
214
+ st_(st) {
215
+ }
216
+
217
+ template<class SimplexHandle>
218
+ Simplex_tree_boundary_opposite_vertex_simplex_iterator(SimplexTree * st, SimplexHandle sh)
219
+ : last_(sh->first),
220
+ next_(st->null_vertex()),
221
+ sib_(nullptr),
222
+ baov_(st->null_simplex(), sh->first),
223
+ st_(st) {
224
+ // Only check once at the beginning instead of for every increment, as this is expensive.
225
+ if constexpr (SimplexTree::Options::contiguous_vertices)
226
+ GUDHI_CHECK(st_->contiguous_vertices(), "The set of vertices is not { 0, ..., n } without holes");
227
+ Siblings * sib = st->self_siblings(sh);
228
+ next_ = sib->parent();
229
+ sib_ = sib->oncles();
230
+ if (sib_ != nullptr) {
231
+ if constexpr (SimplexTree::Options::contiguous_vertices &&
232
+ !SimplexTree::Options::stable_simplex_handles) {
233
+ if (sib_->oncles() == nullptr)
234
+ // Only relevant for edges
235
+ baov_.first = sib_->members_.begin() + next_;
236
+ else
237
+ baov_.first = sib_->find(next_);
238
+ } else {
239
+ baov_.first = sib_->find(next_);
240
+ }
241
+ }
242
+ }
243
+
244
+ private:
245
+ friend class boost::iterator_core_access;
246
+
247
+ // valid when iterating along the SAME boundary.
248
+ bool equal(Simplex_tree_boundary_opposite_vertex_simplex_iterator const& other) const {
249
+ return (baov_.first == other.baov_.first);
250
+ }
251
+
252
+ std::pair<Simplex_handle, Vertex_handle> const& dereference() const {
253
+ return baov_;
254
+ }
255
+
256
+ void increment() {
257
+ if (sib_ == nullptr) {
258
+ baov_.first = st_->null_simplex();
259
+ return; // ------>>
260
+ }
261
+ Siblings * for_sib = sib_;
262
+ Siblings * new_sib = sib_->oncles();
263
+ auto rit = suffix_.rbegin();
264
+ if constexpr (SimplexTree::Options::contiguous_vertices && !SimplexTree::Options::stable_simplex_handles) {
265
+ if (new_sib == nullptr) {
266
+ // We reached the root, use a short-cut to find a vertex.
267
+ if (rit == suffix_.rend()) {
268
+ baov_.second = baov_.first->first;
269
+ // Segment, this vertex is the last boundary simplex
270
+ baov_.first = for_sib->members_.begin() + last_;
271
+ sib_ = nullptr;
272
+ return;
273
+ } else {
274
+ // Dim >= 2, initial step of the descent
275
+ baov_.first = for_sib->members_.begin() + *rit;
276
+ for_sib = baov_.first->second.children();
277
+ ++rit;
278
+ }
279
+ }
280
+ }
281
+
282
+ for (; rit != suffix_.rend(); ++rit) {
283
+ baov_.first = for_sib->find(*rit);
284
+ for_sib = baov_.first->second.children();
285
+ }
286
+ baov_.first = for_sib->find(last_); // baov_.first points to the right simplex now
287
+ suffix_.push_back(next_);
288
+ next_ = sib_->parent();
289
+ sib_ = new_sib;
290
+ baov_.second = suffix_.back();
291
+ }
292
+
293
+ // Most of the storage should be moved to the range, iterators should be light.
294
+ Vertex_handle last_; // last vertex of the simplex
295
+ Vertex_handle next_; // next vertex to push in suffix_
296
+ Static_vertex_vector suffix_;
297
+ Siblings * sib_; // where the next search will start from
298
+ std::pair<Simplex_handle, Vertex_handle> baov_; // a pair containing the current Simplex_handle in the boundary and its opposite vertex
299
+ SimplexTree * st_; // simplex containing the simplicial complex
300
+ };
301
+
302
+ /*---------------------------------------------------------------------------*/
303
+ /** \brief Iterator over the simplices of a simplicial complex.
304
+ *
305
+ * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
306
+ template<class SimplexTree>
307
+ class Simplex_tree_complex_simplex_iterator : public boost::iterator_facade<
308
+ Simplex_tree_complex_simplex_iterator<SimplexTree>,
309
+ typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
310
+ public:
311
+ typedef typename SimplexTree::Simplex_handle Simplex_handle;
312
+ typedef typename SimplexTree::Siblings Siblings;
313
+ typedef typename SimplexTree::Vertex_handle Vertex_handle;
314
+
315
+ // any end() iterator
316
+ Simplex_tree_complex_simplex_iterator()
317
+ : sib_(nullptr),
318
+ st_(nullptr) {
319
+ }
320
+
321
+ explicit Simplex_tree_complex_simplex_iterator(SimplexTree * st)
322
+ : sib_(nullptr),
323
+ st_(st) {
324
+ if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
325
+ st_ = nullptr;
326
+ } else {
327
+ sh_ = st->root()->members().begin();
328
+ sib_ = st->root();
329
+ while (st->has_children(sh_)) {
330
+ sib_ = sh_->second.children();
331
+ sh_ = sib_->members().begin();
332
+ }
333
+ }
334
+ }
335
+ private:
336
+ friend class boost::iterator_core_access;
337
+
338
+ // valid when iterating along the SAME boundary.
339
+ bool equal(Simplex_tree_complex_simplex_iterator const& other) const {
340
+ if (other.st_ == nullptr) {
341
+ return (st_ == nullptr);
342
+ }
343
+ if (st_ == nullptr) {
344
+ return false;
345
+ }
346
+ return (&(sh_->second) == &(other.sh_->second));
347
+ }
348
+
349
+ Simplex_handle const& dereference() const {
350
+ return sh_;
351
+ }
352
+
353
+ // Depth first traversal.
354
+ void increment() {
355
+ ++sh_;
356
+ if (sh_ == sib_->members().end()) {
357
+ if (sib_->oncles() == nullptr) {
358
+ st_ = nullptr;
359
+ return;
360
+ } // reach the end
361
+ sh_ = sib_->oncles()->members().find(sib_->parent());
362
+ sib_ = sib_->oncles();
363
+ return;
364
+ }
365
+ while (st_->has_children(sh_)) {
366
+ sib_ = sh_->second.children();
367
+ sh_ = sib_->members().begin();
368
+ }
369
+ }
370
+
371
+ Simplex_handle sh_;
372
+ Siblings * sib_;
373
+ SimplexTree * st_;
374
+ };
375
+
376
+ /** \brief Iterator over the simplices of the skeleton of a given
377
+ * dimension of the simplicial complex.
378
+ *
379
+ * Forward iterator, value_type is SimplexTree::Simplex_handle.*/
380
+ template<class SimplexTree>
381
+ class Simplex_tree_skeleton_simplex_iterator : public boost::iterator_facade<
382
+ Simplex_tree_skeleton_simplex_iterator<SimplexTree>,
383
+ typename SimplexTree::Simplex_handle const, boost::forward_traversal_tag> {
384
+ public:
385
+ typedef typename SimplexTree::Simplex_handle Simplex_handle;
386
+ typedef typename SimplexTree::Siblings Siblings;
387
+ typedef typename SimplexTree::Vertex_handle Vertex_handle;
388
+
389
+ // any end() iterator
390
+ Simplex_tree_skeleton_simplex_iterator()
391
+ : sib_(nullptr),
392
+ st_(nullptr),
393
+ dim_skel_(0),
394
+ curr_dim_(0) {
395
+ }
396
+
397
+ Simplex_tree_skeleton_simplex_iterator(SimplexTree * st, int dim_skel)
398
+ : sib_(nullptr),
399
+ st_(st),
400
+ dim_skel_(dim_skel),
401
+ curr_dim_(0) {
402
+ if (st == nullptr || st->root() == nullptr || st->root()->members().empty()) {
403
+ st_ = nullptr;
404
+ } else {
405
+ sh_ = st->root()->members().begin();
406
+ sib_ = st->root();
407
+ while (st->has_children(sh_) && curr_dim_ < dim_skel_) {
408
+ sib_ = sh_->second.children();
409
+ sh_ = sib_->members().begin();
410
+ ++curr_dim_;
411
+ }
412
+ }
413
+ }
414
+ private:
415
+ friend class boost::iterator_core_access;
416
+
417
+ // valid when iterating along the SAME boundary.
418
+ bool equal(Simplex_tree_skeleton_simplex_iterator const& other) const {
419
+ if (other.st_ == nullptr) {
420
+ return (st_ == nullptr);
421
+ }
422
+ if (st_ == nullptr) {
423
+ return false;
424
+ }
425
+ return (&(sh_->second) == &(other.sh_->second));
426
+ }
427
+
428
+ Simplex_handle const& dereference() const {
429
+ return sh_;
430
+ }
431
+
432
+ // Depth first traversal of the skeleton.
433
+ void increment() {
434
+ ++sh_;
435
+ if (sh_ == sib_->members().end()) {
436
+ if (sib_->oncles() == nullptr) {
437
+ st_ = nullptr;
438
+ return;
439
+ } // reach the end
440
+ sh_ = sib_->oncles()->members().find(sib_->parent());
441
+ sib_ = sib_->oncles();
442
+ --curr_dim_;
443
+ return;
444
+ }
445
+ while (st_->has_children(sh_) && curr_dim_ < dim_skel_) {
446
+ sib_ = sh_->second.children();
447
+ sh_ = sib_->members().begin();
448
+ ++curr_dim_;
449
+ }
450
+ }
451
+
452
+ Simplex_handle sh_;
453
+ Siblings * sib_;
454
+ SimplexTree * st_;
455
+ int dim_skel_;
456
+ int curr_dim_;
457
+ };
458
+
459
+ /** @}*/ // end addtogroup simplex_tree
460
+
461
+ } // namespace Gudhi
462
+
463
+ #endif // SIMPLEX_TREE_SIMPLEX_TREE_ITERATORS_H_