multipers 2.2.3__cp311-cp311-win_amd64.whl → 2.3.0__cp311-cp311-win_amd64.whl

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Files changed (182) hide show
  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/filtrations/filtrations.py +289 -0
  15. multipers/filtrations.pxd +224 -224
  16. multipers/function_rips.cp311-win_amd64.pyd +0 -0
  17. multipers/function_rips.pyx +105 -105
  18. multipers/grids.cp311-win_amd64.pyd +0 -0
  19. multipers/grids.pyx +350 -350
  20. multipers/gudhi/Persistence_slices_interface.h +132 -132
  21. multipers/gudhi/Simplex_tree_interface.h +239 -245
  22. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  23. multipers/gudhi/cubical_to_boundary.h +59 -59
  24. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  27. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  28. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  29. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  30. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  31. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  32. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  34. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  35. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  36. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  37. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  38. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  39. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  40. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  41. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  42. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  43. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  44. multipers/gudhi/gudhi/Off_reader.h +173 -173
  45. multipers/gudhi/gudhi/One_critical_filtration.h +1432 -1431
  46. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  48. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  49. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  50. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  51. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  52. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  53. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  54. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  55. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  56. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  61. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  75. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  77. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  80. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  81. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  82. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  83. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  84. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  85. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  86. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  90. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  91. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  92. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  93. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  94. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  95. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  96. multipers/gudhi/gudhi/distance_functions.h +62 -62
  97. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  98. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  99. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  100. multipers/gudhi/gudhi/reader_utils.h +367 -367
  101. multipers/gudhi/mma_interface_coh.h +256 -255
  102. multipers/gudhi/mma_interface_h0.h +223 -231
  103. multipers/gudhi/mma_interface_matrix.h +284 -282
  104. multipers/gudhi/naive_merge_tree.h +536 -575
  105. multipers/gudhi/scc_io.h +310 -289
  106. multipers/gudhi/truc.h +890 -888
  107. multipers/io.cp311-win_amd64.pyd +0 -0
  108. multipers/io.pyx +711 -711
  109. multipers/ml/accuracies.py +90 -90
  110. multipers/ml/convolutions.py +520 -520
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp311-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -4
  122. multipers/mma_structures.pyx.tp +1085 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2296 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp311-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +216 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp311-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp311-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +18 -15
  156. multipers/simplex_tree_multi.pyx.tp +1939 -1935
  157. multipers/slicer.cp311-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +81 -20
  159. multipers/slicer.pxd.tp +215 -214
  160. multipers/slicer.pyx +1091 -308
  161. multipers/slicer.pyx.tp +924 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/METADATA +21 -11
  170. multipers-2.3.0.dist-info/RECORD +182 -0
  171. multipers/tests/test_diff_helper.py +0 -73
  172. multipers/tests/test_hilbert_function.py +0 -82
  173. multipers/tests/test_mma.py +0 -83
  174. multipers/tests/test_point_clouds.py +0 -49
  175. multipers/tests/test_python-cpp_conversion.py +0 -82
  176. multipers/tests/test_signed_betti.py +0 -181
  177. multipers/tests/test_signed_measure.py +0 -89
  178. multipers/tests/test_simplextreemulti.py +0 -221
  179. multipers/tests/test_slicer.py +0 -221
  180. multipers-2.2.3.dist-info/RECORD +0 -189
  181. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/WHEEL +0 -0
  182. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/top_level.txt +0 -0
@@ -1,83 +1,83 @@
1
- /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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- * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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- * Author(s): Clément Maria
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- *
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- * Copyright (C) 2014 Inria
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- *
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- * Modification(s):
8
- * - YYYY/MM Author: Description of the modification
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- */
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-
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- #ifndef SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
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- #define SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
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-
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- // Empty base optimization for MSVC - https://learn.microsoft.com/en-us/cpp/cpp/empty-bases
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- #if _MSC_VER
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- #define GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION __declspec(empty_bases)
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- #else
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- #define GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION
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- #endif
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-
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- #include <boost/core/empty_value.hpp>
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-
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- namespace Gudhi {
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-
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- /** \addtogroup simplex_tree
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- * Represents a node of a Simplex_tree.
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- * @{
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- */
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-
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- /** \brief Node of a simplex tree with filtration value
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- * and simplex key.
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- *
33
- * It stores explicitly its own filtration value and its own Simplex_key.
34
- */
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- template <class SimplexTree>
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- struct GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION Simplex_tree_node_explicit_storage
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- : SimplexTree::Filtration_simplex_base,
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- SimplexTree::Key_simplex_base,
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- SimplexTree::Hooks_simplex_base,
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- boost::empty_value<typename SimplexTree::Simplex_data> {
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- typedef typename SimplexTree::Siblings Siblings;
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- typedef typename SimplexTree::Filtration_value Filtration_value;
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- typedef typename SimplexTree::Simplex_key Simplex_key;
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- typedef typename SimplexTree::Simplex_data Simplex_data;
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-
46
- // Simplex_tree_node_explicit_storage() : children_(nullptr) {}
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-
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- // Simplex_tree_node_explicit_storage(Siblings* sib, const Filtration_value& filtration) : children_(sib)
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- // {
50
- // this->assign_filtration(filtration);
51
- // }
52
- Simplex_tree_node_explicit_storage(Siblings* sib = nullptr, const Filtration_value& filtration = Filtration_value())
53
- : SimplexTree::Filtration_simplex_base(filtration), children_(sib)
54
- {}
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-
56
- //will fail to compile when called with SimplexTree::Options::store_key is false.
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- Simplex_tree_node_explicit_storage(Siblings* sib, Filtration_value filtration, Simplex_key key)
58
- : SimplexTree::Filtration_simplex_base(filtration), SimplexTree::Key_simplex_base(key), children_(sib)
59
- {}
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-
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- /*
62
- * Assign children to the node
63
- */
64
- void assign_children(Siblings * children) {
65
- children_ = children;
66
- }
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-
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- /* Careful -> children_ can be NULL*/
69
- Siblings * children() {
70
- return children_;
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- }
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-
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- Simplex_data& data() { return boost::empty_value<Simplex_data>::get(); }
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-
75
- private:
76
- Siblings * children_;
77
- };
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-
79
- /** @}*/ // end addtogroup simplex_tree
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-
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- } // namespace Gudhi
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-
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- #endif // SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
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+ /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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+ * Author(s): Clément Maria
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+ *
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+ * Copyright (C) 2014 Inria
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+ *
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+ * Modification(s):
8
+ * - YYYY/MM Author: Description of the modification
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+ */
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+
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+ #ifndef SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
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+ #define SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
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+
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+ // Empty base optimization for MSVC - https://learn.microsoft.com/en-us/cpp/cpp/empty-bases
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+ #if _MSC_VER
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+ #define GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION __declspec(empty_bases)
17
+ #else
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+ #define GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION
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+ #endif
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+
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+ #include <boost/core/empty_value.hpp>
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+
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+ namespace Gudhi {
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+
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+ /** \addtogroup simplex_tree
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+ * Represents a node of a Simplex_tree.
27
+ * @{
28
+ */
29
+
30
+ /** \brief Node of a simplex tree with filtration value
31
+ * and simplex key.
32
+ *
33
+ * It stores explicitly its own filtration value and its own Simplex_key.
34
+ */
35
+ template <class SimplexTree>
36
+ struct GUDHI_EMPTY_BASE_CLASS_OPTIMIZATION Simplex_tree_node_explicit_storage
37
+ : SimplexTree::Filtration_simplex_base,
38
+ SimplexTree::Key_simplex_base,
39
+ SimplexTree::Hooks_simplex_base,
40
+ boost::empty_value<typename SimplexTree::Simplex_data> {
41
+ typedef typename SimplexTree::Siblings Siblings;
42
+ typedef typename SimplexTree::Filtration_value Filtration_value;
43
+ typedef typename SimplexTree::Simplex_key Simplex_key;
44
+ typedef typename SimplexTree::Simplex_data Simplex_data;
45
+
46
+ // Simplex_tree_node_explicit_storage() : children_(nullptr) {}
47
+
48
+ // Simplex_tree_node_explicit_storage(Siblings* sib, const Filtration_value& filtration) : children_(sib)
49
+ // {
50
+ // this->assign_filtration(filtration);
51
+ // }
52
+ Simplex_tree_node_explicit_storage(Siblings* sib = nullptr, const Filtration_value& filtration = Filtration_value())
53
+ : SimplexTree::Filtration_simplex_base(filtration), children_(sib)
54
+ {}
55
+
56
+ //will fail to compile when called with SimplexTree::Options::store_key is false.
57
+ Simplex_tree_node_explicit_storage(Siblings* sib, Filtration_value filtration, Simplex_key key)
58
+ : SimplexTree::Filtration_simplex_base(filtration), SimplexTree::Key_simplex_base(key), children_(sib)
59
+ {}
60
+
61
+ /*
62
+ * Assign children to the node
63
+ */
64
+ void assign_children(Siblings * children) {
65
+ children_ = children;
66
+ }
67
+
68
+ /* Careful -> children_ can be NULL*/
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+ Siblings * children() {
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+ return children_;
71
+ }
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+
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+ Simplex_data& data() { return boost::empty_value<Simplex_data>::get(); }
74
+
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+ private:
76
+ Siblings * children_;
77
+ };
78
+
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+ /** @}*/ // end addtogroup simplex_tree
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+
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+ } // namespace Gudhi
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+
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+ #endif // SIMPLEX_TREE_SIMPLEX_TREE_NODE_EXPLICIT_STORAGE_H_
@@ -1,106 +1,106 @@
1
- /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
- * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
3
- * Author(s): Clément Maria
4
- *
5
- * Copyright (C) 2014 Inria
6
- *
7
- * Modification(s):
8
- * - YYYY/MM Author: Description of the modification
9
- */
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-
11
- #ifndef SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_
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- #define SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_
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-
14
- #include <gudhi/Simplex_tree/simplex_tree_options.h>
15
- #include <gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h>
16
-
17
- #include <boost/container/flat_map.hpp>
18
-
19
- namespace Gudhi {
20
-
21
- /** \addtogroup simplex_tree
22
- * Represents a set of node of a Simplex_tree that share the same parent.
23
- * @{
24
- */
25
-
26
- /** \brief Data structure to store a set of nodes in a SimplexTree sharing
27
- * the same parent node.*/
28
- template<class SimplexTree, class MapContainer>
29
- class Simplex_tree_siblings {
30
- // private:
31
- // friend SimplexTree;
32
- public:
33
- template<class T> friend class Simplex_tree_simplex_vertex_iterator;
34
- template<class T> friend class Simplex_tree_boundary_simplex_iterator;
35
- template<class T> friend class Simplex_tree_complex_simplex_iterator;
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- template<class T> friend class Simplex_tree_skeleton_simplex_iterator;
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- template<class T> friend class Simplex_tree_boundary_opposite_vertex_simplex_iterator;
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-
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- typedef typename SimplexTree::Vertex_handle Vertex_handle;
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- typedef typename SimplexTree::Filtration_value Filtration_value;
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- typedef typename SimplexTree::Node Node;
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- typedef MapContainer Dictionary;
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- typedef typename MapContainer::iterator Dictionary_it;
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-
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- /* Default constructor.*/
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- Simplex_tree_siblings()
47
- : oncles_(nullptr),
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- parent_(-1),
49
- members_() {
50
- }
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-
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- /* Constructor with values.*/
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- Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent)
54
- : oncles_(oncles),
55
- parent_(parent),
56
- members_() {
57
- }
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-
59
- /** \brief Constructor with initialized set of members.
60
- *
61
- * 'members' must be sorted and unique.*/
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- template<typename RandomAccessVertexRange>
63
- Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent, const RandomAccessVertexRange & members)
64
- : oncles_(oncles),
65
- parent_(parent),
66
- members_(boost::container::ordered_unique_range, members.begin(),
67
- members.end()) {
68
- for (auto& map_el : members_) {
69
- map_el.second.assign_children(this);
70
- }
71
- }
72
-
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- Dictionary_it find(Vertex_handle v) {
74
- return members_.find(v);
75
- }
76
-
77
- Simplex_tree_siblings * oncles() {
78
- return oncles_;
79
- }
80
-
81
- Vertex_handle parent() const {
82
- return parent_;
83
- }
84
-
85
- Dictionary & members() {
86
- return members_;
87
- }
88
-
89
- size_t size() const {
90
- return members_.size();
91
- }
92
-
93
- void erase(const Dictionary_it iterator) {
94
- members_.erase(iterator);
95
- }
96
-
97
- Simplex_tree_siblings * oncles_;
98
- Vertex_handle parent_;
99
- Dictionary members_;
100
- };
101
-
102
- /** @}*/ // end addtogroup simplex_tree
103
-
104
- } // namespace Gudhi
105
-
106
- #endif // SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_
1
+ /* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
2
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
3
+ * Author(s): Clément Maria
4
+ *
5
+ * Copyright (C) 2014 Inria
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+ *
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+ * Modification(s):
8
+ * - YYYY/MM Author: Description of the modification
9
+ */
10
+
11
+ #ifndef SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_
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+ #define SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_
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+
14
+ #include <gudhi/Simplex_tree/simplex_tree_options.h>
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+ #include <gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h>
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+
17
+ #include <boost/container/flat_map.hpp>
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+
19
+ namespace Gudhi {
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+
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+ /** \addtogroup simplex_tree
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+ * Represents a set of node of a Simplex_tree that share the same parent.
23
+ * @{
24
+ */
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+
26
+ /** \brief Data structure to store a set of nodes in a SimplexTree sharing
27
+ * the same parent node.*/
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+ template<class SimplexTree, class MapContainer>
29
+ class Simplex_tree_siblings {
30
+ // private:
31
+ // friend SimplexTree;
32
+ public:
33
+ template<class T> friend class Simplex_tree_simplex_vertex_iterator;
34
+ template<class T> friend class Simplex_tree_boundary_simplex_iterator;
35
+ template<class T> friend class Simplex_tree_complex_simplex_iterator;
36
+ template<class T> friend class Simplex_tree_skeleton_simplex_iterator;
37
+ template<class T> friend class Simplex_tree_boundary_opposite_vertex_simplex_iterator;
38
+
39
+ typedef typename SimplexTree::Vertex_handle Vertex_handle;
40
+ typedef typename SimplexTree::Filtration_value Filtration_value;
41
+ typedef typename SimplexTree::Node Node;
42
+ typedef MapContainer Dictionary;
43
+ typedef typename MapContainer::iterator Dictionary_it;
44
+
45
+ /* Default constructor.*/
46
+ Simplex_tree_siblings()
47
+ : oncles_(nullptr),
48
+ parent_(-1),
49
+ members_() {
50
+ }
51
+
52
+ /* Constructor with values.*/
53
+ Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent)
54
+ : oncles_(oncles),
55
+ parent_(parent),
56
+ members_() {
57
+ }
58
+
59
+ /** \brief Constructor with initialized set of members.
60
+ *
61
+ * 'members' must be sorted and unique.*/
62
+ template<typename RandomAccessVertexRange>
63
+ Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent, const RandomAccessVertexRange & members)
64
+ : oncles_(oncles),
65
+ parent_(parent),
66
+ members_(boost::container::ordered_unique_range, members.begin(),
67
+ members.end()) {
68
+ for (auto& map_el : members_) {
69
+ map_el.second.assign_children(this);
70
+ }
71
+ }
72
+
73
+ Dictionary_it find(Vertex_handle v) {
74
+ return members_.find(v);
75
+ }
76
+
77
+ Simplex_tree_siblings * oncles() {
78
+ return oncles_;
79
+ }
80
+
81
+ Vertex_handle parent() const {
82
+ return parent_;
83
+ }
84
+
85
+ Dictionary & members() {
86
+ return members_;
87
+ }
88
+
89
+ size_t size() const {
90
+ return members_.size();
91
+ }
92
+
93
+ void erase(const Dictionary_it iterator) {
94
+ members_.erase(iterator);
95
+ }
96
+
97
+ Simplex_tree_siblings * oncles_;
98
+ Vertex_handle parent_;
99
+ Dictionary members_;
100
+ };
101
+
102
+ /** @}*/ // end addtogroup simplex_tree
103
+
104
+ } // namespace Gudhi
105
+
106
+ #endif // SIMPLEX_TREE_SIMPLEX_TREE_SIBLINGS_H_