multipers 2.2.3__cp311-cp311-win_amd64.whl → 2.3.0__cp311-cp311-win_amd64.whl

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Files changed (182) hide show
  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/filtrations/filtrations.py +289 -0
  15. multipers/filtrations.pxd +224 -224
  16. multipers/function_rips.cp311-win_amd64.pyd +0 -0
  17. multipers/function_rips.pyx +105 -105
  18. multipers/grids.cp311-win_amd64.pyd +0 -0
  19. multipers/grids.pyx +350 -350
  20. multipers/gudhi/Persistence_slices_interface.h +132 -132
  21. multipers/gudhi/Simplex_tree_interface.h +239 -245
  22. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  23. multipers/gudhi/cubical_to_boundary.h +59 -59
  24. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  27. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  28. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  29. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  30. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  31. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  32. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  34. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  35. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  36. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  37. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  38. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  39. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  40. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  41. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  42. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  43. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  44. multipers/gudhi/gudhi/Off_reader.h +173 -173
  45. multipers/gudhi/gudhi/One_critical_filtration.h +1432 -1431
  46. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  48. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  49. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  50. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  51. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  52. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  53. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  54. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  55. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  56. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  61. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  75. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  77. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  80. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  81. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  82. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  83. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  84. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  85. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  86. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  90. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  91. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  92. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  93. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  94. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  95. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  96. multipers/gudhi/gudhi/distance_functions.h +62 -62
  97. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  98. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  99. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  100. multipers/gudhi/gudhi/reader_utils.h +367 -367
  101. multipers/gudhi/mma_interface_coh.h +256 -255
  102. multipers/gudhi/mma_interface_h0.h +223 -231
  103. multipers/gudhi/mma_interface_matrix.h +284 -282
  104. multipers/gudhi/naive_merge_tree.h +536 -575
  105. multipers/gudhi/scc_io.h +310 -289
  106. multipers/gudhi/truc.h +890 -888
  107. multipers/io.cp311-win_amd64.pyd +0 -0
  108. multipers/io.pyx +711 -711
  109. multipers/ml/accuracies.py +90 -90
  110. multipers/ml/convolutions.py +520 -520
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp311-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -4
  122. multipers/mma_structures.pyx.tp +1085 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2296 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp311-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +216 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp311-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp311-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +18 -15
  156. multipers/simplex_tree_multi.pyx.tp +1939 -1935
  157. multipers/slicer.cp311-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +81 -20
  159. multipers/slicer.pxd.tp +215 -214
  160. multipers/slicer.pyx +1091 -308
  161. multipers/slicer.pyx.tp +924 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/METADATA +21 -11
  170. multipers-2.3.0.dist-info/RECORD +182 -0
  171. multipers/tests/test_diff_helper.py +0 -73
  172. multipers/tests/test_hilbert_function.py +0 -82
  173. multipers/tests/test_mma.py +0 -83
  174. multipers/tests/test_point_clouds.py +0 -49
  175. multipers/tests/test_python-cpp_conversion.py +0 -82
  176. multipers/tests/test_signed_betti.py +0 -181
  177. multipers/tests/test_signed_measure.py +0 -89
  178. multipers/tests/test_simplextreemulti.py +0 -221
  179. multipers/tests/test_slicer.py +0 -221
  180. multipers-2.2.3.dist-info/RECORD +0 -189
  181. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/WHEEL +0 -0
  182. {multipers-2.2.3.dist-info → multipers-2.3.0.dist-info}/top_level.txt +0 -0
multipers/slicer.cp311-win_amd64.pyd CHANGED
Binary file
multipers/slicer.pxd CHANGED
@@ -58,6 +58,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[int32_t] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
@@ -96,6 +98,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[int32_t] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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100
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
@@ -134,6 +138,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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139
  void add_generator(const One_critical_filtration[int64_t] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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138
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
@@ -172,6 +178,8 @@ cdef extern from "Persistence_slices_interface.h":
172
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[int64_t] &) nogil
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181
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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176
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
@@ -210,6 +218,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[float] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
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  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
@@ -248,6 +258,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[float] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
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  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
@@ -286,6 +298,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[double] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
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  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
@@ -324,6 +338,8 @@ cdef extern from "Persistence_slices_interface.h":
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  vector[uint32_t] get_current_order() nogil
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  void add_generator(const One_critical_filtration[double] &) nogil
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+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
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  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
@@ -360,8 +376,9 @@ cdef extern from "Persistence_slices_interface.h":
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  void vineyard_update() nogil
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  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
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  vector[uint32_t] get_current_order() nogil
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- void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
@@ -399,8 +416,9 @@ cdef extern from "Persistence_slices_interface.h":
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  void vineyard_update() nogil
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  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
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  vector[uint32_t] get_current_order() nogil
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- void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
@@ -438,8 +456,9 @@ cdef extern from "Persistence_slices_interface.h":
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  void vineyard_update() nogil
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  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
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  vector[uint32_t] get_current_order() nogil
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- void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
@@ -477,8 +496,9 @@ cdef extern from "Persistence_slices_interface.h":
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  void vineyard_update() nogil
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  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
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  vector[uint32_t] get_current_order() nogil
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- void build_from_scc_file(const string&, bool, bool, int) except + nogil
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+
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  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
@@ -516,8 +536,9 @@ cdef extern from "Persistence_slices_interface.h":
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  void vineyard_update() nogil
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  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
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  vector[uint32_t] get_current_order() nogil
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- void build_from_scc_file(const string&, bool, bool, int) except + nogil
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  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
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544
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
@@ -555,8 +576,9 @@ cdef extern from "Persistence_slices_interface.h":
555
576
  void vineyard_update() nogil
556
577
  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
557
578
  vector[uint32_t] get_current_order() nogil
558
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
579
+
559
580
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
581
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
560
582
 
561
583
 
562
584
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
@@ -594,8 +616,9 @@ cdef extern from "Persistence_slices_interface.h":
594
616
  void vineyard_update() nogil
595
617
  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
596
618
  vector[uint32_t] get_current_order() nogil
597
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
619
+
598
620
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
621
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
599
622
 
600
623
 
601
624
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
@@ -633,8 +656,9 @@ cdef extern from "Persistence_slices_interface.h":
633
656
  void vineyard_update() nogil
634
657
  vector[vector[vector[vector[unsigned int]]]] get_representative_cycles(bool, bool) nogil
635
658
  vector[uint32_t] get_current_order() nogil
636
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
659
+
637
660
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
661
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
638
662
 
639
663
 
640
664
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
@@ -671,6 +695,8 @@ cdef extern from "Persistence_slices_interface.h":
671
695
  C_KSlicer_Matrix0_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
672
696
  void add_generator(const One_critical_filtration[int32_t] &) nogil
673
697
 
698
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
699
+
674
700
 
675
701
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
676
702
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
@@ -706,6 +732,8 @@ cdef extern from "Persistence_slices_interface.h":
706
732
  C_KSlicer_Matrix1_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
707
733
  void add_generator(const One_critical_filtration[int32_t] &) nogil
708
734
 
735
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
736
+
709
737
 
710
738
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
711
739
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
@@ -741,6 +769,8 @@ cdef extern from "Persistence_slices_interface.h":
741
769
  C_KSlicer_Matrix0_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
742
770
  void add_generator(const One_critical_filtration[int64_t] &) nogil
743
771
 
772
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
773
+
744
774
 
745
775
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
746
776
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
@@ -776,6 +806,8 @@ cdef extern from "Persistence_slices_interface.h":
776
806
  C_KSlicer_Matrix1_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
777
807
  void add_generator(const One_critical_filtration[int64_t] &) nogil
778
808
 
809
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
810
+
779
811
 
780
812
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
781
813
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
@@ -811,6 +843,8 @@ cdef extern from "Persistence_slices_interface.h":
811
843
  C_KSlicer_Matrix0_i32 coarsen_on_grid(vector[vector[float]]) nogil
812
844
  void add_generator(const One_critical_filtration[float] &) nogil
813
845
 
846
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
847
+
814
848
 
815
849
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
816
850
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
@@ -846,6 +880,8 @@ cdef extern from "Persistence_slices_interface.h":
846
880
  C_KSlicer_Matrix1_i32 coarsen_on_grid(vector[vector[float]]) nogil
847
881
  void add_generator(const One_critical_filtration[float] &) nogil
848
882
 
883
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
884
+
849
885
 
850
886
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
851
887
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
@@ -881,6 +917,8 @@ cdef extern from "Persistence_slices_interface.h":
881
917
  C_KSlicer_Matrix0_i32 coarsen_on_grid(vector[vector[double]]) nogil
882
918
  void add_generator(const One_critical_filtration[double] &) nogil
883
919
 
920
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
921
+
884
922
 
885
923
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
886
924
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
@@ -916,6 +954,8 @@ cdef extern from "Persistence_slices_interface.h":
916
954
  C_KSlicer_Matrix1_i32 coarsen_on_grid(vector[vector[double]]) nogil
917
955
  void add_generator(const One_critical_filtration[double] &) nogil
918
956
 
957
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
958
+
919
959
 
920
960
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
921
961
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
@@ -949,8 +989,9 @@ cdef extern from "Persistence_slices_interface.h":
949
989
  void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
950
990
  vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
951
991
  C_Slicer_Matrix0_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
952
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
992
+
953
993
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
994
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
954
995
 
955
996
 
956
997
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
@@ -985,8 +1026,9 @@ cdef extern from "Persistence_slices_interface.h":
985
1026
  void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
986
1027
  vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
987
1028
  C_Slicer_Matrix1_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
988
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1029
+
989
1030
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1031
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
990
1032
 
991
1033
 
992
1034
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
@@ -1021,8 +1063,9 @@ cdef extern from "Persistence_slices_interface.h":
1021
1063
  void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
1022
1064
  vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
1023
1065
  C_Slicer_Matrix0_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
1024
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1066
+
1025
1067
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1068
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1026
1069
 
1027
1070
 
1028
1071
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
@@ -1057,8 +1100,9 @@ cdef extern from "Persistence_slices_interface.h":
1057
1100
  void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
1058
1101
  vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
1059
1102
  C_Slicer_Matrix1_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
1060
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1103
+
1061
1104
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1105
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1062
1106
 
1063
1107
 
1064
1108
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
@@ -1093,8 +1137,9 @@ cdef extern from "Persistence_slices_interface.h":
1093
1137
  void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
1094
1138
  vector[One_critical_filtration[float]]& get_filtrations() nogil
1095
1139
  C_Slicer_Matrix0_i32 coarsen_on_grid(vector[vector[float]]) nogil
1096
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1140
+
1097
1141
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1142
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1098
1143
 
1099
1144
 
1100
1145
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
@@ -1129,8 +1174,9 @@ cdef extern from "Persistence_slices_interface.h":
1129
1174
  void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
1130
1175
  vector[One_critical_filtration[float]]& get_filtrations() nogil
1131
1176
  C_Slicer_Matrix1_i32 coarsen_on_grid(vector[vector[float]]) nogil
1132
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1177
+
1133
1178
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1179
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1134
1180
 
1135
1181
 
1136
1182
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
@@ -1165,8 +1211,9 @@ cdef extern from "Persistence_slices_interface.h":
1165
1211
  void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
1166
1212
  vector[One_critical_filtration[double]]& get_filtrations() nogil
1167
1213
  C_Slicer_Matrix0_i32 coarsen_on_grid(vector[vector[double]]) nogil
1168
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1214
+
1169
1215
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1216
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1170
1217
 
1171
1218
 
1172
1219
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
@@ -1201,8 +1248,9 @@ cdef extern from "Persistence_slices_interface.h":
1201
1248
  void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
1202
1249
  vector[One_critical_filtration[double]]& get_filtrations() nogil
1203
1250
  C_Slicer_Matrix1_i32 coarsen_on_grid(vector[vector[double]]) nogil
1204
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1251
+
1205
1252
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1253
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1206
1254
 
1207
1255
 
1208
1256
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
@@ -1239,6 +1287,8 @@ cdef extern from "Persistence_slices_interface.h":
1239
1287
  C_KSlicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
1240
1288
  void add_generator(const One_critical_filtration[int32_t] &) nogil
1241
1289
 
1290
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1291
+
1242
1292
 
1243
1293
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
1244
1294
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
@@ -1274,6 +1324,8 @@ cdef extern from "Persistence_slices_interface.h":
1274
1324
  C_KSlicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
1275
1325
  void add_generator(const One_critical_filtration[int64_t] &) nogil
1276
1326
 
1327
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1328
+
1277
1329
 
1278
1330
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
1279
1331
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
@@ -1309,6 +1361,8 @@ cdef extern from "Persistence_slices_interface.h":
1309
1361
  C_KSlicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[float]]) nogil
1310
1362
  void add_generator(const One_critical_filtration[float] &) nogil
1311
1363
 
1364
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1365
+
1312
1366
 
1313
1367
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
1314
1368
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
@@ -1344,6 +1398,8 @@ cdef extern from "Persistence_slices_interface.h":
1344
1398
  C_KSlicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[double]]) nogil
1345
1399
  void add_generator(const One_critical_filtration[double] &) nogil
1346
1400
 
1401
+ void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1402
+
1347
1403
 
1348
1404
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
1349
1405
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
@@ -1377,8 +1433,9 @@ cdef extern from "Persistence_slices_interface.h":
1377
1433
  void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
1378
1434
  vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
1379
1435
  C_Slicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[int32_t]]) nogil
1380
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1436
+
1381
1437
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1438
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1382
1439
 
1383
1440
 
1384
1441
  vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
@@ -1413,8 +1470,9 @@ cdef extern from "Persistence_slices_interface.h":
1413
1470
  void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
1414
1471
  vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
1415
1472
  C_Slicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[int64_t]]) nogil
1416
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1473
+
1417
1474
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1475
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1418
1476
 
1419
1477
 
1420
1478
  vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
@@ -1449,8 +1507,9 @@ cdef extern from "Persistence_slices_interface.h":
1449
1507
  void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
1450
1508
  vector[One_critical_filtration[float]]& get_filtrations() nogil
1451
1509
  C_Slicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[float]]) nogil
1452
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1510
+
1453
1511
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1512
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1454
1513
 
1455
1514
 
1456
1515
  vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
@@ -1485,8 +1544,9 @@ cdef extern from "Persistence_slices_interface.h":
1485
1544
  void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
1486
1545
  vector[One_critical_filtration[double]]& get_filtrations() nogil
1487
1546
  C_Slicer_GudhiCohomology0_i32 coarsen_on_grid(vector[vector[double]]) nogil
1488
- void build_from_scc_file(const string&, bool, bool, int) except + nogil
1547
+
1489
1548
  void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
1549
+ void build_from_scc_file(const string&, bool, bool, int) except + nogil
1490
1550
 
1491
1551
 
1492
1552
  vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
@@ -1506,6 +1566,7 @@ cdef extern from "multiparameter_module_approximation/approximation.h" namespace
1506
1566
  Module[float] multiparameter_module_approximation(C_Slicer_Matrix1_vine_f32&, One_critical_filtration[float]&, float, Box[float]&, bool, bool, bool) except + nogil
1507
1567
  Module[double] multiparameter_module_approximation(C_Slicer_Matrix0_vine_f64&, One_critical_filtration[double]&, double, Box[double]&, bool, bool, bool) except + nogil
1508
1568
  Module[double] multiparameter_module_approximation(C_Slicer_Matrix1_vine_f64&, One_critical_filtration[double]&, double, Box[double]&, bool, bool, bool) except + nogil
1569
+ pass
1509
1570
 
1510
1571
 
1511
1572