monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/handlers/__init__.py +1 -0
- monai/handlers/average_precision.py +53 -0
- monai/inferers/inferer.py +10 -7
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/metrics/__init__.py +1 -0
- monai/metrics/average_precision.py +187 -0
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utility/array.py +2 -12
- monai/transforms/utils.py +1 -2
- monai/transforms/utils_pytorch_numpy_unification.py +2 -4
- monai/utils/enums.py +3 -2
- monai/utils/module.py +6 -6
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
- monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_average_precision.py +79 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1388 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +884 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_average_precision.py +162 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
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- tests/utils/misc/test_monai_utils_misc.py +103 -0
- tests/utils/misc/test_str2bool.py +34 -0
- tests/utils/misc/test_str2list.py +33 -0
- tests/utils/test_alias.py +44 -0
- tests/utils/test_component_store.py +73 -0
- tests/utils/test_deprecated.py +455 -0
- tests/utils/test_enum_bound_interp.py +75 -0
- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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import torch
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from parameterized import parameterized
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import monai.transforms.intensity.array as ia
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import monai.transforms.spatial.array as sa
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import monai.transforms.spatial.dictionary as sd
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from monai.data import MetaTensor
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from monai.transforms import TraceableTransform, Transform
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from monai.transforms.compose import Compose, SomeOf
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from monai.utils import set_determinism
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from monai.utils.enums import TraceKeys
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from tests.integration.test_one_of import NonInv
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from tests.transforms.test_random_order import InvC, InvD
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class A(Transform):
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def __call__(self, x):
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return 2 * x
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class B(Transform):
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def __call__(self, x):
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return 3 * x
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class C(Transform):
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def __call__(self, x):
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return 5 * x
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class D(Transform):
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def __call__(self, x):
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return 7 * x
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KEYS = ["x", "y"]
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TEST_COMPOUND = [
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(SomeOf((A(), B(), C()), num_transforms=3), 2 * 3 * 5),
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(Compose((SomeOf((A(), B(), C()), num_transforms=3), D())), 2 * 3 * 5 * 7),
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(SomeOf((A(), B(), C(), Compose(D())), num_transforms=4), 2 * 3 * 5 * 7),
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(SomeOf(()), 1),
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(SomeOf(None), 1),
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]
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# Modified from RandomOrder
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TEST_INVERSES = [
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(SomeOf((InvC(KEYS), InvD(KEYS))), True, True),
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(Compose((SomeOf((InvC(KEYS), InvD(KEYS))), SomeOf((InvD(KEYS), InvC(KEYS))))), True, False),
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(SomeOf((SomeOf((InvC(KEYS), InvD(KEYS))), SomeOf((InvD(KEYS), InvC(KEYS))))), True, False),
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(SomeOf((Compose((InvC(KEYS), InvD(KEYS))), Compose((InvD(KEYS), InvC(KEYS))))), True, False),
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(SomeOf((NonInv(KEYS), NonInv(KEYS))), False, False),
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(SomeOf(()), False, False),
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]
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class TestSomeOf(unittest.TestCase):
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def setUp(self):
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set_determinism(seed=0)
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def tearDown(self):
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set_determinism(None)
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def update_transform_count(self, counts, output):
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op_count = 0
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if output % 2 == 0:
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counts[0] += 1
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op_count += 1
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if output % 3 == 0:
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counts[1] += 1
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op_count += 1
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if output % 5 == 0:
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counts[2] += 1
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op_count += 1
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return op_count
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def test_fixed(self):
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iterations = 10000
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num_transforms = 3
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transform_counts = 3 * [0]
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subset_size_counts = 4 * [0]
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s = SomeOf((A(), B(), C()), num_transforms=num_transforms)
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for _ in range(iterations):
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output = s(1)
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subset_size = self.update_transform_count(transform_counts, output)
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subset_size_counts[subset_size] += 1
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for i in range(3):
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self.assertEqual(transform_counts[i], iterations)
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for i in range(3):
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self.assertEqual(subset_size_counts[i], 0)
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self.assertEqual(subset_size_counts[3], iterations)
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def test_unfixed(self):
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iterations = 10000
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num_transforms = (0, 3)
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transform_counts = 3 * [0]
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subset_size_counts = 4 * [0]
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s = SomeOf((A(), B(), C()), num_transforms=num_transforms)
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for _ in range(iterations):
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output = s(1)
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subset_size = self.update_transform_count(transform_counts, output)
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subset_size_counts[subset_size] += 1
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for i in range(3):
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self.assertAlmostEqual(transform_counts[i] / iterations, 0.5, delta=0.01)
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for i in range(4):
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self.assertAlmostEqual(subset_size_counts[i] / iterations, 0.25, delta=0.01)
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def test_non_dict_metatensor(self):
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data = MetaTensor(1)
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s = SomeOf([A()], num_transforms=1)
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out = s(data)
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self.assertEqual(out, 2)
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inv = s.inverse(out) # A() is not invertible, nothing happens
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self.assertEqual(inv, 2)
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@parameterized.expand(TEST_COMPOUND)
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def test_compound_pipeline(self, transform, expected_value):
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output = transform(1)
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self.assertEqual(output, expected_value)
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# Modified from RandomOrder
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@parameterized.expand(TEST_INVERSES)
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def test_inverse(self, transform, invertible, use_metatensor):
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data = {k: (i + 1) * 10.0 if not use_metatensor else MetaTensor((i + 1) * 10.0) for i, k in enumerate(KEYS)}
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fwd_data1 = transform(data)
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# test call twice won't affect inverse
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fwd_data2 = transform(data)
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if invertible:
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for k in KEYS:
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t = (
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fwd_data1[TraceableTransform.trace_key(k)][-1]
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if not use_metatensor
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else fwd_data1[k].applied_operations[-1]
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)
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# make sure the SomeOf applied_order was stored
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self.assertEqual(t[TraceKeys.CLASS_NAME], SomeOf.__name__)
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# call the inverse
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fwd_inv_data1 = transform.inverse(fwd_data1)
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fwd_inv_data2 = transform.inverse(fwd_data2)
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fwd_data = [fwd_data1, fwd_data2]
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fwd_inv_data = [fwd_inv_data1, fwd_inv_data2]
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for i, _fwd_inv_data in enumerate(fwd_inv_data):
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if invertible:
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for k in KEYS:
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# check transform was removed
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if not use_metatensor:
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self.assertTrue(
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len(_fwd_inv_data[TraceableTransform.trace_key(k)])
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< len(fwd_data[i][TraceableTransform.trace_key(k)])
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)
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# check data is same as original (and different from forward)
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self.assertEqual(_fwd_inv_data[k], data[k])
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self.assertNotEqual(_fwd_inv_data[k], fwd_data[i][k])
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else:
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# if not invertible, should not change the data
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self.assertDictEqual(fwd_data[i], _fwd_inv_data)
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def test_bad_inverse_data(self):
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tr = SomeOf((A(), B(), C()), num_transforms=1, weights=(1, 2, 1))
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self.assertRaises(RuntimeError, tr.inverse, [])
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def test_normalize_weights(self):
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tr = SomeOf((A(), B(), C()), num_transforms=1, weights=(1, 2, 1))
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self.assertTupleEqual(tr.weights, (0.25, 0.5, 0.25))
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tr = SomeOf((), num_transforms=1, weights=(1, 2, 1))
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self.assertIsNone(tr.weights)
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def test_no_weights_arg(self):
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tr = SomeOf((A(), B(), C(), D()), num_transforms=1)
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self.assertIsNone(tr.weights)
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def test_bad_weights(self):
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=1, weights=(1, 2))
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=1, weights=(0, 0, 0))
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=1, weights=(-1, 1, 1))
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def test_bad_num_transforms(self):
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=(-1, 2))
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms="str")
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=(1, 2, 3))
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self.assertRaises(ValueError, SomeOf, (A(), B(), C()), num_transforms=("a", 1))
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TEST_SOMEOF_EXTENDED_TEST_CASES = [
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[None, tuple()],
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[None, (sa.Rotate(np.pi / 8),)],
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[None, (sa.Flip(0), sa.Flip(1), sa.Rotate90(1), sa.Zoom(0.8), ia.NormalizeIntensity())],
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[("a",), (sd.Rotated(("a",), np.pi / 8),)],
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]
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class TestSomeOfAPITests(unittest.TestCase):
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@staticmethod
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def data_from_keys(keys):
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if keys is None:
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data = torch.unsqueeze(torch.tensor(np.arange(12 * 16).reshape(12, 16)), dim=0)
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else:
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data = {}
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for i_k, k in enumerate(keys):
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data[k] = torch.unsqueeze(torch.tensor(np.arange(12 * 16)).reshape(12, 16) + i_k * 192, dim=0)
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return data
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@parameterized.expand(TEST_SOMEOF_EXTENDED_TEST_CASES)
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def test_execute_change_start_end(self, keys, pipeline):
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data = self.data_from_keys(keys)
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c = SomeOf(deepcopy(pipeline))
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with self.assertRaises(ValueError):
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c(data, start=1)
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with self.assertRaises(ValueError):
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c(data, start=1)
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c = SomeOf(deepcopy(pipeline))
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with self.assertRaises(ValueError):
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c(data, end=1)
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with self.assertRaises(ValueError):
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c(data, end=1)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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from parameterized.parameterized import parameterized
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms.croppad.array import RandWeightedCrop
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from monai.transforms.lazy.functional import apply_pending
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from tests.croppers import CropTest
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from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, NumpyImageTestCase3D, assert_allclose
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def get_data(ndim):
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im_gen = NumpyImageTestCase2D() if ndim == 2 else NumpyImageTestCase3D()
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im_gen.setUp()
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return im_gen.imt[0], im_gen.seg1[0], im_gen.segn[0]
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IMT_2D, SEG1_2D, SEGN_2D = get_data(ndim=2)
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IMT_3D, SEG1_3D, SEGN_3D = get_data(ndim=3)
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TESTS = []
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for p in TEST_NDARRAYS_ALL:
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for q in TEST_NDARRAYS_ALL:
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im = SEG1_2D
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weight = np.zeros_like(im)
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weight[0, 30, 17] = 1.1
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weight[0, 40, 31] = 1
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weight[0, 80, 21] = 1
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TESTS.append(
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[
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"small roi 2d",
|
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dict(spatial_size=(10, 12), num_samples=3),
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p(im),
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48
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q(weight),
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+
(1, 10, 12),
|
50
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[[80, 21], [30, 17], [40, 31]],
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]
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)
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im = IMT_2D
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TESTS.append(
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[
|
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"default roi 2d",
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dict(spatial_size=(10, -1), num_samples=3),
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p(im),
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q(weight),
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(1, 10, 64),
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[[14, 32], [105, 32], [20, 32]],
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]
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)
|
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im = SEGN_2D
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weight = np.zeros_like(im)
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weight[0, 30, 17] = 1.1
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weight[0, 10, 1] = 1
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TESTS.append(
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[
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"large roi 2d",
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dict(spatial_size=(10000, 400), num_samples=3),
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p(im),
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q(weight),
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(1, 128, 64),
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[[64, 32], [64, 32], [64, 32]],
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]
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)
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im = IMT_2D
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weight = np.zeros_like(im)
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weight[0, 30, 17] = np.inf
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weight[0, 10, 1] = -np.inf
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weight[0, 10, 20] = -np.nan
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TESTS.append(
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[
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"bad w 2d",
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dict(spatial_size=(20, 40), num_samples=3),
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p(im),
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+
q(weight),
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(1, 20, 40),
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[[63, 37], [31, 43], [66, 20]],
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]
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)
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im = SEG1_2D
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weight_map = np.zeros_like(im, dtype=np.int32)
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weight_map[0, 30, 20] = 3
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weight_map[0, 45, 44] = 1
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weight_map[0, 60, 50] = 2
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TESTS.append(
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[
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"int w 2d",
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dict(spatial_size=(10, 12), num_samples=3),
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p(im),
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q(weight_map),
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(1, 10, 12),
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[[60, 50], [30, 20], [45, 44]],
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]
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+
)
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im = SEG1_3D
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weight = np.zeros_like(im)
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weight[0, 5, 30, 17] = 1.1
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weight[0, 8, 40, 31] = 1
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weight[0, 11, 23, 21] = 1
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TESTS.append(
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[
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"small roi 3d",
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dict(spatial_size=(8, 10, 12), num_samples=3),
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p(im),
|
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+
q(weight),
|
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+
(1, 8, 10, 12),
|
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+
[[11, 23, 21], [5, 30, 17], [8, 40, 31]],
|
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+
]
|
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+
)
|
123
|
+
im = IMT_3D
|
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+
weight = np.zeros_like(im)
|
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|
+
weight[0, 7, 17] = 1.1
|
126
|
+
weight[0, 13, 31] = 1.1
|
127
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+
weight[0, 24, 21] = 1
|
128
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+
TESTS.append(
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[
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+
"default roi 3d",
|
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+
dict(spatial_size=(10, -1, -1), num_samples=3),
|
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+
p(im),
|
133
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+
q(weight),
|
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+
(1, 10, 48, 80),
|
135
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+
[[14, 24, 40], [41, 24, 40], [20, 24, 40]],
|
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+
]
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+
)
|
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im = SEGN_3D
|
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weight = np.zeros_like(im)
|
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+
weight[0, 30, 17, 20] = 1.1
|
141
|
+
weight[0, 10, 1, 17] = 1
|
142
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+
TESTS.append(
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[
|
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"large roi 3d",
|
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+
dict(spatial_size=(10000, 400, 80), num_samples=3),
|
146
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+
p(im),
|
147
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+
q(weight),
|
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+
(1, 64, 48, 80),
|
149
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+
[[32, 24, 40], [32, 24, 40], [32, 24, 40]],
|
150
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+
]
|
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+
)
|
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im = IMT_3D
|
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weight = np.zeros_like(im)
|
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+
weight[0, 30, 17] = np.inf
|
155
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+
weight[0, 10, 1] = -np.inf
|
156
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+
weight[0, 10, 20] = -np.nan
|
157
|
+
TESTS.append(
|
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+
[
|
159
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+
"bad w 3d",
|
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+
dict(spatial_size=(64, 48, 80), num_samples=3),
|
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+
p(im),
|
162
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+
q(weight),
|
163
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+
(1, 64, 48, 80),
|
164
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+
[[32, 24, 40], [32, 24, 40], [32, 24, 40]],
|
165
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+
]
|
166
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+
)
|
167
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+
im = SEG1_3D
|
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+
weight_map = np.zeros_like(im, dtype=np.int32)
|
169
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+
weight_map[0, 6, 22, 19] = 4
|
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+
weight_map[0, 8, 40, 31] = 2
|
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+
weight_map[0, 13, 20, 24] = 3
|
172
|
+
TESTS.append(
|
173
|
+
[
|
174
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+
"int w 3d",
|
175
|
+
dict(spatial_size=(8, 10, 12), num_samples=3),
|
176
|
+
p(im),
|
177
|
+
q(weight_map),
|
178
|
+
(1, 8, 10, 12),
|
179
|
+
[[13, 20, 24], [6, 22, 19], [8, 40, 31]],
|
180
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+
]
|
181
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+
)
|
182
|
+
|
183
|
+
|
184
|
+
class TestRandWeightedCrop(CropTest):
|
185
|
+
Cropper = RandWeightedCrop
|
186
|
+
|
187
|
+
@parameterized.expand(TESTS)
|
188
|
+
def test_rand_weighted_crop(self, _, input_params, img, weight, expected_shape, expected_vals):
|
189
|
+
crop = RandWeightedCrop(**input_params)
|
190
|
+
crop.set_random_state(10)
|
191
|
+
result = crop(img, weight)
|
192
|
+
self.assertTrue(len(result) == input_params["num_samples"])
|
193
|
+
assert_allclose(result[0].shape, expected_shape)
|
194
|
+
for c, e in zip(crop.centers, expected_vals):
|
195
|
+
assert_allclose(c, e, type_test=False)
|
196
|
+
# if desired ROI is larger than image, check image is unchanged
|
197
|
+
if all(s >= i for i, s in zip(img.shape[1:], input_params["spatial_size"])):
|
198
|
+
for res in result:
|
199
|
+
assert_allclose(res, img, type_test="tensor")
|
200
|
+
self.assertEqual(len(res.applied_operations), 1)
|
201
|
+
|
202
|
+
@parameterized.expand(TESTS)
|
203
|
+
def test_pending_ops(self, _, input_param, img, weight, expected_shape, expected_vals):
|
204
|
+
crop = RandWeightedCrop(**input_param)
|
205
|
+
# non-lazy
|
206
|
+
crop.set_random_state(10)
|
207
|
+
expected = crop(img, weight)
|
208
|
+
self.assertIsInstance(expected[0], MetaTensor)
|
209
|
+
# lazy
|
210
|
+
crop.set_random_state(10)
|
211
|
+
crop.lazy = True
|
212
|
+
pending_result = crop(img, weight)
|
213
|
+
for i, _pending_result in enumerate(pending_result):
|
214
|
+
self.assertIsInstance(_pending_result, MetaTensor)
|
215
|
+
assert_allclose(_pending_result.peek_pending_affine(), expected[i].affine)
|
216
|
+
assert_allclose(_pending_result.peek_pending_shape(), expected[i].shape[1:])
|
217
|
+
# only support nearest
|
218
|
+
result = apply_pending(_pending_result, overrides={"mode": "nearest", "align_corners": False})[0]
|
219
|
+
# compare
|
220
|
+
assert_allclose(result, expected[i], rtol=1e-5)
|
221
|
+
|
222
|
+
|
223
|
+
if __name__ == "__main__":
|
224
|
+
unittest.main()
|
@@ -0,0 +1,182 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.data.meta_tensor import MetaTensor
|
20
|
+
from monai.transforms.croppad.dictionary import RandWeightedCropd
|
21
|
+
from monai.transforms.lazy.functional import apply_pending
|
22
|
+
from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, NumpyImageTestCase3D, assert_allclose
|
23
|
+
|
24
|
+
|
25
|
+
def get_data(ndim):
|
26
|
+
im_gen = NumpyImageTestCase2D() if ndim == 2 else NumpyImageTestCase3D()
|
27
|
+
im_gen.setUp()
|
28
|
+
return im_gen.imt[0], im_gen.seg1[0], im_gen.segn[0]
|
29
|
+
|
30
|
+
|
31
|
+
IMT_2D, SEG1_2D, SEGN_2D = get_data(ndim=2)
|
32
|
+
IMT_3D, SEG1_3D, SEGN_3D = get_data(ndim=3)
|
33
|
+
|
34
|
+
TESTS = []
|
35
|
+
for p in TEST_NDARRAYS_ALL:
|
36
|
+
for q in TEST_NDARRAYS_ALL:
|
37
|
+
im = IMT_2D
|
38
|
+
weight = np.zeros_like(im)
|
39
|
+
weight[0, 30, 17] = 1.1
|
40
|
+
weight[0, 40, 31] = 1
|
41
|
+
weight[0, 80, 21] = 1
|
42
|
+
TESTS.append(
|
43
|
+
[
|
44
|
+
"small roi 2d",
|
45
|
+
dict(keys="img", w_key="w", spatial_size=(10, 12), num_samples=3),
|
46
|
+
{"img": p(im), "w": q(weight)},
|
47
|
+
(1, 10, 12),
|
48
|
+
[[80, 21], [30, 17], [40, 31]],
|
49
|
+
]
|
50
|
+
)
|
51
|
+
|
52
|
+
weight = np.zeros_like(im)
|
53
|
+
weight[0, 30, 17] = 1.1
|
54
|
+
weight[0, 40, 31] = 1
|
55
|
+
weight[0, 80, 21] = 1
|
56
|
+
TESTS.append(
|
57
|
+
[
|
58
|
+
"default roi 2d",
|
59
|
+
dict(keys="img", w_key="w", spatial_size=(10, -1), num_samples=3),
|
60
|
+
{"img": p(im), "w": q(weight), "others": np.nan},
|
61
|
+
(1, 10, 64),
|
62
|
+
[[14, 32], [105, 32], [20, 32]],
|
63
|
+
]
|
64
|
+
)
|
65
|
+
|
66
|
+
weight = np.zeros_like(im)
|
67
|
+
weight[0, 30, 17] = 1.1
|
68
|
+
weight[0, 10, 1] = 1
|
69
|
+
TESTS.append(
|
70
|
+
[
|
71
|
+
"large roi 2d",
|
72
|
+
dict(keys=("img", "seg"), w_key="weight", spatial_size=(10000, 400), num_samples=3),
|
73
|
+
{"img": p(im), "seg": p(SEGN_2D), "weight": q(weight)},
|
74
|
+
(1, 128, 64),
|
75
|
+
[[64, 32], [64, 32], [64, 32]],
|
76
|
+
]
|
77
|
+
)
|
78
|
+
|
79
|
+
weight = np.zeros_like(im)
|
80
|
+
weight[0, 30, 17] = np.inf
|
81
|
+
weight[0, 10, 1] = -np.inf
|
82
|
+
weight[0, 10, 20] = -np.nan
|
83
|
+
TESTS.append(
|
84
|
+
[
|
85
|
+
"bad w roi 2d",
|
86
|
+
dict(keys=("img", "seg"), w_key="w", spatial_size=(20, 40), num_samples=3),
|
87
|
+
{"img": p(im), "seg": p(SEGN_2D), "w": q(weight)},
|
88
|
+
(1, 20, 40),
|
89
|
+
[[63, 37], [31, 43], [66, 20]],
|
90
|
+
]
|
91
|
+
)
|
92
|
+
|
93
|
+
im = IMT_3D
|
94
|
+
weight = np.zeros_like(im)
|
95
|
+
weight[0, 5, 30, 17] = 1.1
|
96
|
+
weight[0, 8, 40, 31] = 1
|
97
|
+
weight[0, 11, 23, 21] = 1
|
98
|
+
TESTS.append(
|
99
|
+
[
|
100
|
+
"small roi 3d",
|
101
|
+
dict(keys="img", w_key="w", spatial_size=(8, 10, 12), num_samples=3),
|
102
|
+
{"img": p(im), "w": q(weight)},
|
103
|
+
(1, 8, 10, 12),
|
104
|
+
[[11, 23, 21], [5, 30, 17], [8, 40, 31]],
|
105
|
+
]
|
106
|
+
)
|
107
|
+
|
108
|
+
weight = np.zeros_like(im)
|
109
|
+
weight[0, 5, 30, 17] = 1.1
|
110
|
+
weight[0, 8, 40, 31] = 1
|
111
|
+
weight[0, 11, 23, 21] = 1
|
112
|
+
TESTS.append(
|
113
|
+
[
|
114
|
+
"default roi 3d",
|
115
|
+
dict(keys=("img", "seg"), w_key="w", spatial_size=(10, -1, -1), num_samples=3),
|
116
|
+
{"img": p(im), "seg": p(SEGN_3D), "w": q(weight)},
|
117
|
+
(1, 10, 64, 80),
|
118
|
+
[[14, 32, 40], [41, 32, 40], [20, 32, 40]],
|
119
|
+
]
|
120
|
+
)
|
121
|
+
|
122
|
+
weight = np.zeros_like(im)
|
123
|
+
weight[0, 30, 17, 20] = 1.1
|
124
|
+
weight[0, 10, 1, 17] = 1
|
125
|
+
TESTS.append(
|
126
|
+
[
|
127
|
+
"large roi 3d",
|
128
|
+
dict(keys="img", w_key="w", spatial_size=(10000, 400, 80), num_samples=3),
|
129
|
+
{"img": p(im), "w": q(weight)},
|
130
|
+
(1, 48, 64, 80),
|
131
|
+
[[24, 32, 40], [24, 32, 40], [24, 32, 40]],
|
132
|
+
]
|
133
|
+
)
|
134
|
+
|
135
|
+
weight = np.zeros_like(im)
|
136
|
+
weight[0, 30, 17] = np.inf
|
137
|
+
weight[0, 10, 1] = -np.inf
|
138
|
+
weight[0, 10, 20] = -np.nan
|
139
|
+
TESTS.append(
|
140
|
+
[
|
141
|
+
"bad w roi 3d",
|
142
|
+
dict(keys=("img", "seg"), w_key="w", spatial_size=(48, 64, 80), num_samples=3),
|
143
|
+
{"img": p(im), "seg": p(SEGN_3D), "w": q(weight)},
|
144
|
+
(1, 48, 64, 80),
|
145
|
+
[[24, 32, 40], [24, 32, 40], [24, 32, 40]],
|
146
|
+
]
|
147
|
+
)
|
148
|
+
|
149
|
+
|
150
|
+
class TestRandWeightedCrop(unittest.TestCase):
|
151
|
+
@parameterized.expand(TESTS)
|
152
|
+
def test_rand_weighted_cropd(self, _, init_params, input_data, expected_shape, expected_centers):
|
153
|
+
crop = RandWeightedCropd(**init_params)
|
154
|
+
crop.set_random_state(10)
|
155
|
+
result = crop(input_data)
|
156
|
+
self.assertEqual(len(result), init_params["num_samples"])
|
157
|
+
_len = len(tuple(input_data.keys()))
|
158
|
+
self.assertTupleEqual(tuple(result[0].keys())[:_len], tuple(input_data.keys()))
|
159
|
+
|
160
|
+
@parameterized.expand(TESTS)
|
161
|
+
def test_pending_ops(self, _, input_param, input_data, expected_shape, expected_centers):
|
162
|
+
crop = RandWeightedCropd(**input_param)
|
163
|
+
# non-lazy
|
164
|
+
crop.set_random_state(10)
|
165
|
+
expected = crop(input_data)
|
166
|
+
self.assertIsInstance(expected[0]["img"], MetaTensor)
|
167
|
+
# lazy
|
168
|
+
crop.set_random_state(10)
|
169
|
+
crop.lazy = True
|
170
|
+
pending_result = crop(input_data)
|
171
|
+
for i, _pending_result in enumerate(pending_result):
|
172
|
+
self.assertIsInstance(_pending_result["img"], MetaTensor)
|
173
|
+
assert_allclose(_pending_result["img"].peek_pending_affine(), expected[i]["img"].affine)
|
174
|
+
assert_allclose(_pending_result["img"].peek_pending_shape(), expected[i]["img"].shape[1:])
|
175
|
+
# only support nearest
|
176
|
+
result = apply_pending(_pending_result["img"], overrides={"mode": "nearest", "align_corners": False})[0]
|
177
|
+
# compare
|
178
|
+
assert_allclose(result, expected[i]["img"], rtol=1e-5)
|
179
|
+
|
180
|
+
|
181
|
+
if __name__ == "__main__":
|
182
|
+
unittest.main()
|
@@ -0,0 +1,10 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|